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This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027289735.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027289735", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289735" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GKM0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKM0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100760433", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKM0", "locus": {} } ], "crossref": [ { "id": "A0A9J7GKM0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GKM0", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100760433", "url": "https://www.ncbi.nlm.nih.gov/gene/100760433", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100760433", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760433", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GKM0", "url": "https://www.orthodb.org/?gene=A0A9J7GKM0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24390", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24390", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24390:SF159", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24390:SF159", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027289735", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289735", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GKM0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKM0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GKM0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKM0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSRRVPIFVHETKTQRRATGKMPASRINALQDLLIFKDVAVDLSQEEWECLDCAQKELYMDVMLENYTNLVFVENHFMCDKYEKVSDQDMKNVLYELVNIQEKSYKCNVFGQVIHESSQCVLYNTSDTAENCNQDRFANHRNAYTESLNVNRHKSGKKREEPCKYKDGINSLNLSSIISQHGKIHTAKKKHKNTECDKSFKSKHQNKLKETNSGRECHQCRKCGKCFSLVSSLSRHKRSHTETPYKCTECDKSFTLGSSFKIHQRIHTGEKPYKCSECDKSFMNTKYLKIHQRIHTGKKPYKCSDCDKSFTQKCHLRSHQKIHTGEKPYKCCECDRSFADKGHLRRHQRIHTGTKSYK", "length": 358, "header": "tr|A0A9J7GKM0-1|A0A9J7GKM0_CRIGR Isoform 1 of Zinc finger protein 525 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100760433 PE=3 SV=1 CANONICAL=A0A9J7GKM0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GKM0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKM0/entry", "sequence": { "sequence": "MSRRVPIFVHETKTQRRATGKMPASRINALQDLLIFKDVAVDLSQEEWECLDCAQKELYMDVMLENYTNLVFVENHFMCDKYEKVSDQDMKNVLYELVNIQEKSYKCNVFGQVIHESSQCVLYNTSDTAENCNQDRFANHRNAYTESLNVNRHKSGKKREEPCKYKDGINSLNLSSIISQHGKIHTAKKKHKNTECDKSFKSKHQNKLKETNSGRECHQCRKCGKCFSLVSSLSRHKRSHTETPYKCTECDKSFTLGSSFKIHQRIHTGEKPYKCSECDKSFMNTKYLKIHQRIHTGKKPYKCSDCDKSFTQKCHLRSHQKIHTGEKPYKCCECDRSFADKGHLRRHQRIHTGTKSYK", "length": 358, "header": "tr|A0A9J7GKM0-1|A0A9J7GKM0_CRIGR Isoform 1 of Zinc finger protein 525 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100760433 PE=3 SV=1 CANONICAL=A0A9J7GKM0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GKM0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKM0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"id": "A0A9J7GKM0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKM0" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GKM0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKM0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GKM0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKM0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GKM0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKM0" } ], "pmid": "" }, { 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"sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7GKN3-1", "uniprot_ac": "A0A9J7GKN3", "uniprot_id": "A0A9J7GKN3_CRIGR", "mass": { "chemical_mass": 120693.0, "monoisotopic_mass": 120693.0 }, "refseq": { "ac": "XP_027289755", "name": "vomeronasal type-2 receptor 116 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289755" }, "gene_names": [ { "name": "LOC100754253", "type": "recommended", "evidence": [ { "id": "A0A9J7GKN3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKN3" } ] }, { "name": "LOC100754253", "type": "synonym", "evidence": [ { "id": "XP_027289755", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289755" } ] } ], "protein_names": [ { "name": "Vomeronasal type-2 receptor 116 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7GKN3", "database": "UniProtKB", "url": 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This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027289755", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289755" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GKN3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKN3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100754253", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKN3", "locus": {} } ], "crossref": [ { "id": "A0A9J7GKN3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GKN3", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd06365", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06365", "database": "CDD", "categories": [ "Protein 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"MGIRNDRGCSLEAFILMGQDSGNQRMAKGLHRQFTQAGPRPRPTRLAPRPGAGAERGEDAPPPPRPPPDGGPPSQEGHCQASLAVDAMLNGFRLFSGHWGFSGQNEVMYPSTETPMLRNGTGEGLVITCPCGGEVEAPMVADASLDVLGLSPGLWVFSGPETMMCLCQGPPKLEKVDLGLSWKTQDFKNARVLGYLLGKAANRKWKLPNRENCAALKNGERIFHNLCHVCAYNSTECFFKIKEDFHHKGDVDIGVFFPIHTYFTGDKVSHSHVLSYFNKFYLRYNLKNYEFILALVFAIEKINRNSDLLPNISLGFDFYNTPYGEKNILGSALFWFTGMHDPLSNYNCVKERKSAAALTGPSWAKSAHIATLLQLYKFPQLTIGPFDPILSDQSQFNSLYQMAPKGTSLSLAIVSLMVHFSWNWVGLLLPDDHRGTEFLSDFRKNMEKNTVCIAFVEMISSTWTSFSYKFWANLGKIQESLANVIIIYGDSDSLQGLMLNLGKHFLTWKVWVMNSQWDVTNHADYFLVDSFHGSLIFSLQHEQMAEFPNFIKTVNPFNYPEDIYLPKLWALFFQCSFSELDCQLVERCQPNASLELLPRHIIGMTMREESYNVYKAVYIVAHSLHEMSLQQVQMQPFESENKMVFFPWQLHHFLRNNHVRDKLALYWKQELDDKYDILNFWNFPKGLGLKVKVGTFIPNAPQGQQLSLSEKLIQWPKIYSKIPQSVCSKSCEPGFRKVSLEGKAVCCYGCIPCPDNAISNETDMDQCMKCPESHYANTEKMQCLQKVVSFLDYKGPLGMSLTTIALCLSVVTAVVLGLFVKQRNTPIVKANNRTLSYTLLITLNICFLCTFLFIGSLNTTTCILQQIIFGGAFTVALATVLAKAITVVIAFKVTFPSRVVRWLIITKAPNFIIPICTMMYLVLCAIWLGSSPPFLDQDAHAEHGHIIIMCNKGSAFAFHGVLGYLCSLALGSYTMAFLSRNLPDTFNEAKFLSFSMLVFFCVWLTFLPVYHSTKGKVMVAMEVFSILASSAALLGFIFVPKCYIILIRPDKNSLHHIRNRPHSSRNILLRT", "length": 1071, "header": "tr|A0A9J7GKN3-1|A0A9J7GKN3_CRIGR Isoform 1 of Vomeronasal type-2 receptor 116 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100754253 PE=3 SV=1 CANONICAL=A0A9J7GKN3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GKN3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKN3/entry", "sequence": { "sequence": "MGIRNDRGCSLEAFILMGQDSGNQRMAKGLHRQFTQAGPRPRPTRLAPRPGAGAERGEDAPPPPRPPPDGGPPSQEGHCQASLAVDAMLNGFRLFSGHWGFSGQNEVMYPSTETPMLRNGTGEGLVITCPCGGEVEAPMVADASLDVLGLSPGLWVFSGPETMMCLCQGPPKLEKVDLGLSWKTQDFKNARVLGYLLGKAANRKWKLPNRENCAALKNGERIFHNLCHVCAYNSTECFFKIKEDFHHKGDVDIGVFFPIHTYFTGDKVSHSHVLSYFNKFYLRYNLKNYEFILALVFAIEKINRNSDLLPNISLGFDFYNTPYGEKNILGSALFWFTGMHDPLSNYNCVKERKSAAALTGPSWAKSAHIATLLQLYKFPQLTIGPFDPILSDQSQFNSLYQMAPKGTSLSLAIVSLMVHFSWNWVGLLLPDDHRGTEFLSDFRKNMEKNTVCIAFVEMISSTWTSFSYKFWANLGKIQESLANVIIIYGDSDSLQGLMLNLGKHFLTWKVWVMNSQWDVTNHADYFLVDSFHGSLIFSLQHEQMAEFPNFIKTVNPFNYPEDIYLPKLWALFFQCSFSELDCQLVERCQPNASLELLPRHIIGMTMREESYNVYKAVYIVAHSLHEMSLQQVQMQPFESENKMVFFPWQLHHFLRNNHVRDKLALYWKQELDDKYDILNFWNFPKGLGLKVKVGTFIPNAPQGQQLSLSEKLIQWPKIYSKIPQSVCSKSCEPGFRKVSLEGKAVCCYGCIPCPDNAISNETDMDQCMKCPESHYANTEKMQCLQKVVSFLDYKGPLGMSLTTIALCLSVVTAVVLGLFVKQRNTPIVKANNRTLSYTLLITLNICFLCTFLFIGSLNTTTCILQQIIFGGAFTVALATVLAKAITVVIAFKVTFPSRVVRWLIITKAPNFIIPICTMMYLVLCAIWLGSSPPFLDQDAHAEHGHIIIMCNKGSAFAFHGVLGYLCSLALGSYTMAFLSRNLPDTFNEAKFLSFSMLVFFCVWLTFLPVYHSTKGKVMVAMEVFSILASSAALLGFIFVPKCYIILIRPDKNSLHHIRNRPHSSRNILLRT", "length": 1071, "header": "tr|A0A9J7GKN3-1|A0A9J7GKN3_CRIGR Isoform 1 of Vomeronasal type-2 receptor 116 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100754253 PE=3 SV=1 CANONICAL=A0A9J7GKN3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GKN3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKN3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GKN3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKN3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754253", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754253", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GKN3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKN3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GKN3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKN3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 119, "end_pos": 121, "annotation": "n_glycosylation_sequon" }, { "start_pos": 233, "end_pos": 235, "annotation": "n_glycosylation_sequon" }, { "start_pos": 311, "end_pos": 313, "annotation": "n_glycosylation_sequon" }, { "start_pos": 591, "end_pos": 593, "annotation": "n_glycosylation_sequon" }, { "start_pos": 760, "end_pos": 762, "annotation": "n_glycosylation_sequon" }, { "start_pos": 832, "end_pos": 834, "annotation": "n_glycosylation_sequon" }, { "start_pos": 858, "end_pos": 860, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GKN3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKN3" }, { "id": "PS50259", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50259" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 3 profile", "eco_id": "ECO_0000259", "start_pos": 797, "end_pos": 1061, "start_aa": "Leu", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 119, "end_pos": 121 }, { "start_pos": 233, "end_pos": 235 }, { "start_pos": 311, "end_pos": 313 }, { "start_pos": 591, "end_pos": 593 }, { "start_pos": 760, "end_pos": 762 }, { "start_pos": 832, "end_pos": 834 }, { "start_pos": 858, "end_pos": 860 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": 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"sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7GKP3-1", "uniprot_ac": "A0A9J7GKP3", "uniprot_id": "A0A9J7GKP3_CRIGR", "mass": { "chemical_mass": 60079.0, "monoisotopic_mass": 60079.0 }, "refseq": { "ac": "XP_027289782", "name": "endogenous retrovirus group K member 113 Gag polyprotein-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289782" }, "gene_names": [ { "name": "LOC113838162", "type": "recommended", "evidence": [ { "id": "A0A9J7GKP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKP3" } ] }, { "name": "LOC113838162", "type": "synonym", "evidence": [ { "id": "XP_027289782", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289782" } ] } ], "protein_names": [ { "name": "Endogenous retrovirus group K member 113 Gag polyprotein-like", "type": "synonym", "evidence": [ { "id": "A0A9J7GKP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKP3/entry#names_and_taxonomy" } ] }, { "name": "endogenous retrovirus group K member 113 Gag polyprotein-like", "type": "synonym", "evidence": [ { "id": "XP_027289782", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289782" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023277363.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027289782", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289782" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GKP3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKP3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113838162", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKP3", "locus": {} } ], "crossref": [ { "id": "A0A9J7GKP3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GKP3", "database": "AlphaFoldDB", "categories": [] }, { "id": "113838162", "url": "https://www.ncbi.nlm.nih.gov/gene/113838162", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001878", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001878", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008916", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008916", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008919", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008919", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010999", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010999", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036875", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036875", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038124", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038124", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050195", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050195", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113838162", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113838162", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GKP3", "url": "https://www.orthodb.org/?gene=A0A9J7GKP3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR40389", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR40389", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR40389:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR40389:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00607", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00607", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02337", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02337", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14787", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14787", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027289782", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289782", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GKP3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKP3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GKP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKP3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGNSTSHPIFWALNELLRSKDLKLKKSTLERFLEECDANAPWFGHSGNLTISSWDKLGRDLDFAAQEGTLKGGVRPIWKLVRSCLEDQRCTDAVKNGQAALEMLQEERSVCSHSERGSAKEKGIYPSLKGTGTSSSEEDSEPEEVQLASRLEKIKLGEKGKNHKESQFKGAAVPSVPPPYHAMTEDPGRGQGASCCSLIWWQVLSEMQLAFPVFTDAQGQRYYEALDFKMIKALAESVRMYGVSASFTLTLVESLIRLCVTPTDWTNLASACLSPGQYLEWKAFLSEFTEEQAAINQAIGGPERRDWNKEMLLGLGPYSNQQTGYPVQLFDQINQIAIRAWKSIPNKGEVSGNLTKIVQGPMEPFSDFVTRVLEAAEIETWTKIYRELGGPLTNAGLAAAVVQLTRGAKGNLGAYFRCGKAGHIKRNCPERKTEGDTGGSSFSRRQPGLCPKCKKGKQWANECRSVKDINGRPLEAEVNSTLPKNAQRAPCPQGPQIYGAMETRERRWEQGEWPTLQHQRSRGEPLQAQQDWTSAPPPDSY", "length": 541, "header": "tr|A0A9J7GKP3-1|A0A9J7GKP3_CRIGR Isoform 1 of Endogenous retrovirus group K member 113 Gag polyprotein-like OS=Cricetulus griseus OX=10029 GN=LOC113838162 PE=4 SV=1 CANONICAL=A0A9J7GKP3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GKP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKP3/entry", "sequence": { "sequence": 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This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027260470", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260470" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JIY3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JIY3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Atxn2l", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JIY3", "locus": {} } ], "crossref": [ { "id": "100765372", "url": "https://www.ncbi.nlm.nih.gov/gene/100765372", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR009604", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009604", "database": "InterPro", "categories": [ "Protein Classification" ] 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This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. 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{ "database": "UniProtKB", "id": "A0A9J7JJ06", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJ06" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 15, "end_pos": 17, "annotation": "n_glycosylation_sequon" }, { "start_pos": 202, "end_pos": 204, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 15, "end_pos": 17 }, { "start_pos": 202, "end_pos": 204 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", 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"type": "synonym", "evidence": [ { "id": "XP_027262215", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262215" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027262215", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262215" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JJ37", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJ37" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cstf2t", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJ37", "locus": {} } ], "crossref": [ { "id": "A0A9J7JJ37", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JJ37", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd12671", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12671", "database": "CDD", "categories": [ "Protein Classification" ] 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"MSSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAAPIIDSPYGDPIDPEDAPESITRAVASLPPEQMFELMKQMKLCVQNSHQEARNMLLQNPQLAYALLQAQVVMRIMDPEIALKILHRKIHVTPLIPGKSQPGPGPGPGGPGPGPGSGPGPATAPGLCPGPNVMLNQQNPPAPQPQHLPRRPVKDIPPLMQTSIQGGIPAPGPIPAAVPGPGPGSLTPAGAMQPQVGMPVPLERGQMQMSDPRPPMPRGPMPSGGIPPRGLLGDAPNDPRGGTLLSVTGEVEPRGYMGPPHQGPPMHHGHDSRGPSSHDMRGGPLAADPRMLIGEPRGPMIDQRGLPMDGRGGRESRGMETRPMETEVLEPRGMERRMETCAMETRGMEARGLEMRGPGPSSRGPMTGGIQGPGPINMGAGGPQGPRQVPNIAGVGNPGGGMQGAGIQGAGMQGAGIQGGGMQGASMQGAGMQAGMQGAGMQAGMQGAGMQAGMQGAGMQAGMQGAGMQAGMQGAGMQAGIQGSSKQGGGQPSSFSPGQSQVTPQDQEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKSTGAS", "length": 654, "header": "tr|A0A9J7JJ37-1|A0A9J7JJ37_CRIGR Isoform 1 of Cleavage stimulation factor subunit 2 tau variant OS=Cricetulus griseus OX=10029 GN=Cstf2t PE=4 SV=1 CANONICAL=A0A9J7JJ37-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JJ37-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJ37/entry", "sequence": { "sequence": 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027263325", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263325" } ] }, { "annotation": "Odorant receptor.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JJD1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJD1#function" }, { "database": "UniProtKB", "id": "ARBA00002936", "url": "https://www.uniprot.org/uniprotkb/ARBA00002936#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JJD1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJD1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100774136", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJD1", "locus": {} } ], "crossref": [ { "id": "cd15953", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15953", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100774136", "url": "https://www.ncbi.nlm.nih.gov/gene/100774136", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050402", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050402", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100774136", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774136", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JJD1", "url": "https://www.orthodb.org/?gene=A0A9J7JJD1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR26450", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26450", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR26450:SF132", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26450:SF132", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027263325", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263325", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JJD1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJD1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JJD1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJD1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDLQVLRGKAQVVSLLLPSGTXPGSTMMPCNSTGHPSFFILQGIPGMEDKHRWISIPFSSMYFITVMGNCTILLTISTERSLHKPMFLLLFLLALTDLGMSTTTIPKVLCIFWFGQTEISYEGCLVQLFFIHSISAMQSSVLMTMAFDRYVAICKPLRYSTILSNSRIGLIGLVSLVRAILFILPMPILLQRMPFHANQVIPTTYCEHMAVVKMVCVDTTVNRIYGLVVALLVVGIDISAIASSYVLIIRAIMHLSSKEAHHKAVNTCTTHICVMLVSYTPCLFSFLTHRFGRGIPPHVHTILGNLYFLVPPMLNPIIYGVKTKEFRDKVTKYLFRMKEPILLSHSHKVV", "length": 350, "header": "tr|A0A9J7JJD1-1|A0A9J7JJD1_CRIGR Isoform 1 of LOW QUALITY PROTEIN: olfactory receptor 52D1 OS=Cricetulus griseus OX=10029 GN=LOC100774136 PE=3 SV=1 CANONICAL=A0A9J7JJD1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JJD1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJD1/entry", "sequence": { "sequence": "MDLQVLRGKAQVVSLLLPSGTXPGSTMMPCNSTGHPSFFILQGIPGMEDKHRWISIPFSSMYFITVMGNCTILLTISTERSLHKPMFLLLFLLALTDLGMSTTTIPKVLCIFWFGQTEISYEGCLVQLFFIHSISAMQSSVLMTMAFDRYVAICKPLRYSTILSNSRIGLIGLVSLVRAILFILPMPILLQRMPFHANQVIPTTYCEHMAVVKMVCVDTTVNRIYGLVVALLVVGIDISAIASSYVLIIRAIMHLSSKEAHHKAVNTCTTHICVMLVSYTPCLFSFLTHRFGRGIPPHVHTILGNLYFLVPPMLNPIIYGVKTKEFRDKVTKYLFRMKEPILLSHSHKVV", "length": 350, "header": "tr|A0A9J7JJD1-1|A0A9J7JJD1_CRIGR Isoform 1 of LOW QUALITY PROTEIN: olfactory receptor 52D1 OS=Cricetulus griseus OX=10029 GN=LOC100774136 PE=3 SV=1 CANONICAL=A0A9J7JJD1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027273992", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273992" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JJH8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJH8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Abhd12b", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJH8", "locus": {} } ], "crossref": [ { "id": "A0A9J7JJH8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JJH8", "database": "AlphaFoldDB", "categories": [] }, { "id": "100752990", "url": "https://www.ncbi.nlm.nih.gov/gene/100752990", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR022742", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022742", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752990", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752990", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JJH8", "url": "https://www.orthodb.org/?gene=A0A9J7JJH8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12277", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12277", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12277:SF69", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12277:SF69", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12146", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12146", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027273992", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273992", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JJH8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJH8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JJH8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJH8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JSL2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSL2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JSL2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSL2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDAMDCEAASGPGPPACACVASWWDMVLRNLRLFPHACSALVRKIAAEFQSFTSKSLKEHILPPLMNMLIYFNFYKTPLLVDLKRPESKIAHTVNFYLRPEPGVLLGIWHTVPSCRGEDAKGKCRCWYEAALHDGNPIIVYLHGSAQHRAAPHRIKLAKVLSDGGFHVLSVDYRGFGDSTGTPTEEGLTRDAICVYEWTKARSGRTPVCLWGHSLGTGVATNAARALEAKGCPVDAIVLKAPFTNMWVASINYPLLKIYKKLPRCLRMLMDALKEDKIVFPSDENVKFLSSPLLILHGEDDRTVPLECGKQLYEIARKAYRNKDRVKMVVFPPGFHHNLLCKSPLLLRSVRDFLSQQWA", "length": 359, "header": "tr|A0A9J7JJH8-1|A0A9J7JJH8_CRIGR Isoform 1 of Protein ABHD12B isoform X2 OS=Cricetulus griseus OX=10029 GN=Abhd12b PE=4 SV=1 CANONICAL=A0A9J7JJH8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JJH8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJH8/entry", "sequence": { "sequence": "MDAMDCEAASGPGPPACACVASWWDMVLRNLRLFPHACSALVRKIAAEFQSFTSKSLKEHILPPLMNMLIYFNFYKTPLLVDLKRPESKIAHTVNFYLRPEPGVLLGIWHTVPSCRGEDAKGKCRCWYEAALHDGNPIIVYLHGSAQHRAAPHRIKLAKVLSDGGFHVLSVDYRGFGDSTGTPTEEGLTRDAICVYEWTKARSGRTPVCLWGHSLGTGVATNAARALEAKGCPVDAIVLKAPFTNMWVASINYPLLKIYKKLPRCLRMLMDALKEDKIVFPSDENVKFLSSPLLILHGEDDRTVPLECGKQLYEIARKAYRNKDRVKMVVFPPGFHHNLLCKSPLLLRSVRDFLSQQWA", "length": 359, "header": "tr|A0A9J7JJH8-1|A0A9J7JJH8_CRIGR Isoform 1 of Protein ABHD12B isoform X2 OS=Cricetulus griseus OX=10029 GN=Abhd12b PE=4 SV=1 CANONICAL=A0A9J7JJH8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JSL2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSL2/entry", "sequence": { "sequence": "MDAMDCEAASGPGPPACACVASWWDMVLRNLRHTVPSCRGEDAKGKCRCWYEAALHDGNPIIVYLHGSAQHRAAPHRIKLAKVLSDGGFHVLSVDYRGFGDSTGTPTEEGLTRDAICVYEWTKARSGRTPVCLWGHSLGTGVATNAARALEAKGCPVDAIVLKAPFTNMWVASINYPLLKIYKKLPRCLRMLMDALKEDKIVFPSDENVKFLSSPLLILHGEDDRTVPLECGKQLYEIARKAYRNKDRVKMVVFPPGFHHNLLCKSPLLLRSVRDFLSQQWA", "length": 282, "header": "tr|A0A9J7JSL2-1|A0A9J7JSL2_CRIGR Computationally mapped isoform of Protein ABHD12B isoform X3 OS=Cricetulus griseus OX=10029 GN=Abhd12b PE=4 SV=1 CANONICAL=A0A9J7JJH8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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isoform of Guided entry of tail-anchored proteins factor 1 isoform X9 OS=Cricetulus griseus OX=10029 GN=Get1 PE=3 SV=1 CANONICAL=A0A9J7JPT2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JPT2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPT2/entry", "sequence": { "sequence": "MTSVEAAWLQGGQAAALTAPTPPHPPDVPRRRRAAGSHFGLPGLHVRLASLELDACAQAVVWTESRFKIRKKQQEVVGFLEANKIDFKELDIAGDEDNRKWMRENVPGEKKPQNGIPLPPQIFNEEQYCGSEKMMEPVVRRSSRFGDFDSFFSAKEENIIYSFLGLAPPPGSKVTKSEEASSLPNGDVAGEAEGAAEGTEQAEGSGENKSHKEDDVSQEKNTLFLCGPKEEEGEEGERTTEETEEAAEEAAEGEAEEEEAEEEAGQGEDS", "length": 270, "header": "tr|A0A9J7JPT2-1|A0A9J7JPT2_CRIGR Isoform 1 of Guided entry of tail-anchored proteins factor 1 isoform X7 OS=Cricetulus griseus OX=10029 GN=Get1 PE=3 SV=1 CANONICAL=A0A9J7JPT2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JQW0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQW0/entry", "sequence": { "sequence": "MCQEVTLSTKIRKKQQEVVGFLEANKIDFKELDIAGDEDNRKWMRENVPGEKKPQNGIPLPPQIFNEEQYCGSEKMMEPVVRRSSRFGDFDSFFSAKEENIIYSFLGLAPPPGSKVTKSEEASSLPNGDVAGEAEGAAEGTEQAEGSGENKSHKEDDVSQEKNTLFLCGPKEEEGEEGERTTEETEEAAEEAAEGEAEEEEAEEEAGQGEDS", "length": 212, "header": "tr|A0A9J7JQW0-1|A0A9J7JQW0_CRIGR Computationally mapped isoform of Guided entry of tail-anchored proteins factor 1 isoform X6 OS=Cricetulus griseus OX=10029 GN=Get1 PE=3 SV=1 CANONICAL=A0A9J7JPT2-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 21, "start_aa": "Thr", "end_pos": 21, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr21", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JKP2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKP2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JKP2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKP2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDPAEAVLQEKALKFMAAVPAGGYWRNNKKCSMPRSLWLGCSSLADSMPSLRCLYNPGTGALTAFQNSSEREDCNNGEPPRKIIPEKNSLRQTYNSCARLCINQETVCLTSTAMKTENCVAKTKLANGTSSMIVPKQRKLSASYEKEKELCVKYFEQWSESDQVEFVEHLISQMCHYQHGHINSYLKPMLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKPPDENAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNAGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLMAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPAAHAEPPRSPSRTYTYISR", "length": 619, "header": "tr|A0A9J7JKP2-1|A0A9J7JKP2_CRIGR Isoform 1 of F-box/WD repeat-containing protein 1A isoform X1 OS=Cricetulus griseus OX=10029 GN=Btrc PE=4 SV=1 CANONICAL=A0A9J7JKP2-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M8L4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8L4/entry", "sequence": { "sequence": "MDPAEAVLQEKALKFMCSMPRSLWLGCSSLADSMPSLRCLYNPGTGALTAFQNSSEREDCNNGEPPRKIIPEKNSLRQTYNSCARLCINQETVCLTSTAMKTENCVAKTKLANGTSSMIVPKQRKLSASYEKEKELCVKYFEQWSESDQVEFVEHLISQMCHYQHGHINSYLKPMLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKPPDENAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNAGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLMAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPAAHAEPPRSPSRTYTYISR", "length": 605, "header": "tr|A0A8C2M8L4-1|A0A9J7JKP2_CRIGR Computationally mapped isoform of F-box/WD repeat-containing protein 1A isoform X1 OS=Cricetulus griseus OX=10029 GN=Btrc PE=4 SV=1 CANONICAL=A0A9J7JKP2-1" }, "locus": {} }, { "isoform_ac": "A0A8C2QIG5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QIG5/entry", "sequence": { "sequence": "MDPAEAVLQEKALKFMNSSEREDCNNGEPPRKIIPEKNSLRQTYNSCARLCINQETVCLTSTAMKTENCVAKTKLANGTSSMIVPKQRKLSASYEKEKELCVKYFEQWSESDQVEFVEHLISQMCHYQHGHINSYLKPMLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKPPDENAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNAGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLMAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPAAHAEPPRSPSRTYTYISR", "length": 569, "header": "tr|A0A8C2QIG5-1|A0A9J7JKP2_CRIGR Computationally mapped isoform of F-box/WD repeat-containing protein 1A isoform X1 OS=Cricetulus griseus OX=10029 GN=Btrc PE=4 SV=1 CANONICAL=A0A9J7JKP2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FLH7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLH7/entry", "sequence": { "sequence": "MDPAEAVLQEKALKFMAAVPAGGYWRNNKKNSSEREDCNNGEPPRKIIPEKNSLRQTYNSCARLCINQETVCLTSTAMKTENCVAKTKLANGTSSMIVPKQRKLSASYEKEKELCVKYFEQWSESDQVEFVEHLISQMCHYQHGHINSYLKPMLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKPPDENAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNAGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLMAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPAAHAEPPRSPSRTYTYISR", "length": 583, "header": "tr|A0A9J7FLH7-1|A0A9J7JKP2_CRIGR Computationally mapped isoform of F-box/WD repeat-containing protein 1A isoform X1 OS=Cricetulus griseus OX=10029 GN=Btrc PE=4 SV=1 CANONICAL=A0A9J7JKP2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FLX5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLX5/entry", "sequence": { "sequence": "MDGCFLGRSVGYPLQNSSEREDCNNGEPPRKIIPEKNSLRQTYNSCARLCINQETVCLTSTAMKTENCVAKTKLANGTSSMIVPKQRKLSASYEKEKELCVKYFEQWSESDQVEFVEHLISQMCHYQHGHINSYLKPMLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKPPDENAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNAGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLMAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPAAHAEPPRSPSRTYTYISR", "length": 568, "header": "tr|A0A9J7FLX5-1|A0A9J7JKP2_CRIGR Computationally mapped isoform of F-box/WD repeat-containing protein 1A isoform X1 OS=Cricetulus griseus OX=10029 GN=Btrc PE=4 SV=1 CANONICAL=A0A9J7JKP2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FMI6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMI6/entry", "sequence": { "sequence": "MPRSLWLGCSSLADSMPSLRCLYNPGTGALTAFQNSSEREDCNNGEPPRKIIPEKNSLRQTYNSCARLCINQETVCLTSTAMKTENCVAKTKLANGTSSMIVPKQRKLSASYEKEKELCVKYFEQWSESDQVEFVEHLISQMCHYQHGHINSYLKPMLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKPPDENAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNAGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLMAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPAAHAEPPRSPSRTYTYISR", "length": 587, "header": "tr|A0A9J7FMI6-1|A0A9J7JKP2_CRIGR Computationally mapped isoform of F-box/WD repeat-containing protein 1A isoform X1 OS=Cricetulus griseus OX=10029 GN=Btrc PE=4 SV=1 CANONICAL=A0A9J7JKP2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FPG3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPG3/entry", "sequence": { "sequence": "MDPAEAVLQEKALKFMAAVPAGGYWRNNKKCSMPRSLWLGCSSLADSMPSLRCLYNPGTGALTAFQTYNSCARLCINQETVCLTSTAMKTENCVAKTKLANGTSSMIVPKQRKLSASYEKEKELCVKYFEQWSESDQVEFVEHLISQMCHYQHGHINSYLKPMLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKPPDENAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNAGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLMAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPAAHAEPPRSPSRTYTYISR", "length": 593, "header": "tr|A0A9J7FPG3-1|A0A9J7JKP2_CRIGR Computationally mapped isoform of F-box/WD repeat-containing protein 1A isoform X1 OS=Cricetulus griseus OX=10029 GN=Btrc PE=4 SV=1 CANONICAL=A0A9J7JKP2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GSX6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GSX6/entry", "sequence": { "sequence": "MPRSLWLGCSSLADSMPSLRCLYNPGTGALTAFQTYNSCARLCINQETVCLTSTAMKTENCVAKTKLANGTSSMIVPKQRKLSASYEKEKELCVKYFEQWSESDQVEFVEHLISQMCHYQHGHINSYLKPMLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKPPDENAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNAGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLMAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPAAHAEPPRSPSRTYTYISR", "length": 561, "header": "tr|A0A9J7GSX6-1|A0A9J7GSX6_CRIGR Computationally mapped isoform of F-box/WD repeat-containing protein 1A isoform X9 OS=Cricetulus griseus OX=10029 GN=Btrc PE=4 SV=1 CANONICAL=A0A9J7JKP2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GTT5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GTT5/entry", "sequence": { "sequence": "MKTENCVAKTKLANGTSSMIVPKQRKLSASYEKEKELCVKYFEQWSESDQVEFVEHLISQMCHYQHGHINSYLKPMLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKPPDENAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNAGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLMAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPAAHAEPPRSPSRTYTYISR", "length": 506, "header": "tr|A0A9J7GTT5-1|A0A9J7GTT5_CRIGR Computationally mapped isoform of F-box/WD repeat-containing protein 1A isoform X12 OS=Cricetulus griseus OX=10029 GN=Btrc PE=4 SV=1 CANONICAL=A0A9J7JKP2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GV42-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GV42/entry", "sequence": { "sequence": "MDPAEAVLQEKALKFMCSMPRSLWLGCSSLADSMPSLRCLYNPGTGALTAFQTYNSCARLCINQETVCLTSTAMKTENCVAKTKLANGTSSMIVPKQRKLSASYEKEKELCVKYFEQWSESDQVEFVEHLISQMCHYQHGHINSYLKPMLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKPPDENAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNAGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLMAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPAAHAEPPRSPSRTYTYISR", "length": 579, "header": "tr|A0A9J7GV42-1|A0A9J7GV42_CRIGR Computationally mapped isoform of F-box/WD repeat-containing protein 1A isoform X6 OS=Cricetulus griseus OX=10029 GN=Btrc PE=4 SV=1 CANONICAL=A0A9J7JKP2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JJ59-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJ59/entry", "sequence": { "sequence": "MDPAEAVLQEKALKFMTYNSCARLCINQETVCLTSTAMKTENCVAKTKLANGTSSMIVPKQRKLSASYEKEKELCVKYFEQWSESDQVEFVEHLISQMCHYQHGHINSYLKPMLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKPPDENAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNAGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLMAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPAAHAEPPRSPSRTYTYISR", "length": 543, "header": "tr|A0A9J7JJ59-1|A0A9J7JKP2_CRIGR Computationally mapped isoform of F-box/WD repeat-containing protein 1A isoform X1 OS=Cricetulus griseus OX=10029 GN=Btrc PE=4 SV=1 CANONICAL=A0A9J7JKP2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JJQ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJQ3/entry", "sequence": { "sequence": "MDPAEAVLQEKALKFMAAVPAGGYWRNNKKTYNSCARLCINQETVCLTSTAMKTENCVAKTKLANGTSSMIVPKQRKLSASYEKEKELCVKYFEQWSESDQVEFVEHLISQMCHYQHGHINSYLKPMLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKPPDENAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNAGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLMAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPAAHAEPPRSPSRTYTYISR", "length": 557, "header": "tr|A0A9J7JJQ3-1|A0A9J7JKP2_CRIGR Computationally mapped isoform of F-box/WD repeat-containing protein 1A isoform X1 OS=Cricetulus griseus OX=10029 GN=Btrc PE=4 SV=1 CANONICAL=A0A9J7JKP2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JKP2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKP2/entry", "sequence": { "sequence": "MDPAEAVLQEKALKFMAAVPAGGYWRNNKKCSMPRSLWLGCSSLADSMPSLRCLYNPGTGALTAFQNSSEREDCNNGEPPRKIIPEKNSLRQTYNSCARLCINQETVCLTSTAMKTENCVAKTKLANGTSSMIVPKQRKLSASYEKEKELCVKYFEQWSESDQVEFVEHLISQMCHYQHGHINSYLKPMLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKPPDENAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNAGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLMAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPAAHAEPPRSPSRTYTYISR", "length": 619, "header": "tr|A0A9J7JKP2-1|A0A9J7JKP2_CRIGR Isoform 1 of F-box/WD repeat-containing protein 1A isoform X1 OS=Cricetulus griseus OX=10029 GN=Btrc PE=4 SV=1 CANONICAL=A0A9J7JKP2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M8L4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8L4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M8L4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8L4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100750426", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750426", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0B4KHK1-1", "protein_name": "Supernumerary limbs, isoform B", "gene_name": "slmb", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MMKMETDKIMDETNSNAQAFTTTMLYDPVRKKDSSPTYQTERELCFQYFTQWSESGQVDFVEHLLSRMCHYQHGQINAYLKPMLQRDFITLLPIKGLDHIAENILSYLDAESLKSSELVCKEWLRVISEGMLWKKLIERKVRTDSLWRGLAERRNWMQYLFKPRPGQTQRPHSFHRELFPKIMNDIDSIENNWRTGRHMLRRINCRSENSKGVYCLQYDDGKIVSGLRDNTIKIWDRTDLQCVKTLMGHTGSVLCLQYDDKVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMTSPSEITLRRVLVGHRAAVNVVDFDEKYIVSASGDRTIKVWSTSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNSIRLWDIECGACLRVLEGHEELVRCIRFDTKRIVSGAYDGKIKVWDLVAALDPRAASNTLCLNTLVEHTGRVFRLQFDEFQIVSSSHDDTILIWDFLNFTPNENKTGRTPSPALMEHXHFVQRQLRELHLQSSSEGEEDDDADEDDEDDFEEEDSRNDAGAFMGGYVRHRDAGGSGSVTGSGSDPESDDLDFDIDVENINDYDE", "length": 597 }, "evidence": [ { "id": "A0A9J7JKP2", "url": "https://omabrowser.org/oma/group/A0A9J7JKP2/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "A0A8I6G2R1-1", "protein_name": "Beta-transducin repeat containing E3 ubiquitin protein ligase", "gene_name": "Btrc", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDPAEAVLQEKALKFMVRRWCGQGTSGGGSVGASLSLGLGHPLTAGGGSGTWGQGRWRGGGRDWTGAWGRGQEGAEGTLRWGQQLRHLVEDKPSDSGSSFEAAVPAGGYWRNNKKCSMPRSLWLGCSSLADSMPSLRCLYNPGTGALTAFQNSSEREDCNNGEPPRKIIPEKNSLRQTYNSCARLCINQETVCLTSTAMKTENCVAKTKLANGTSSMIVPKQRKLSASYEKEKELCVKYFEQWSESDQVEFVEHLISQMCHYQHGHINSYLKPMLQRDFITALPARGLDHIAENILSYLDARSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKPPDENAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNAGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLMAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPATHAEPPRSPSRTYTYISR", "length": 704 }, "evidence": [ { "id": "A0A9J7JKP2", "url": "https://omabrowser.org/oma/group/A0A9J7JKP2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8W4FCR2-1", "protein_name": "Beta-transducin repeat containing E3 ubiquitin protein ligase", "gene_name": "BTRC", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDPAEAVLQEKALKFMCSMPRSLWLGCSSLADSMPSLRCLYNPGTGALTAFQNSSEREDCNNGEPPRKIIPEKNSLRQVYLNKANPITYIPAVTGTRILLLKALFYLTYNSCARLCLNQETVCLASTAMKTENCVAKTKLANGTSSMIVPKQRKLSASYEKEKELCVKYFEQWSESDQVEFVEHLISQMCHYQHGHINSYLKPMLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKPPDGNAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLIAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRTYTYISR", "length": 634 }, "evidence": [ { "id": "A0A9J7JKP2", "url": "https://omabrowser.org/oma/group/A0A9J7JKP2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q3ULA2-1", "protein_name": "F-box/WD 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protein 1A", "gene_name": "BTRC", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDPAEAVLQEKALKFMCSMPRSLWLGCSSLADSMPSLRCLYNPGTGALTAFQNSSEREDCNNGEPPRKIIPEKNSLRQTYNSCARLCLNQETVCLASTAMKTENCVAKTKLANGTSSMIVPKQRKLSASYEKEKELCVKYFEQWSESDQVEFVEHLISQMCHYQHGHINSYLKPMLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKPPDGNAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRTYTYISR", "length": 605 }, "evidence": [ { "id": "A0A9J7JKP2", "url": "https://omabrowser.org/oma/group/A0A9J7JKP2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKP2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKP2" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKP2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKP2" } ], "pmid": "" }, { "name": "SCF ubiquitin ligase complex", "id": "GO:0019005", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019005", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKP2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKP2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 7, "go_terms": [ { "name": "protein dimerization activity", "id": "GO:0046983", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046983", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKP2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKP2" } ], "pmid": "" }, { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKP2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKP2" } ], "pmid": "" }, { "name": "beta-catenin binding", "id": "GO:0008013", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008013", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKP2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKP2" } ], "pmid": "" }, { "name": "protein phosphorylated amino acid binding", "id": "GO:0045309", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045309", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKP2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKP2" } ], "pmid": "" }, { "name": "ubiquitin-like ligase-substrate adaptor activity", "id": "GO:1990756", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990756", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKP2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKP2" } ], "pmid": "" }, { "name": "ubiquitin ligase activator activity", "id": "GO:1990757", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990757", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKP2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKP2" } ], "pmid": "" }, { "name": "ubiquitin-protein transferase activity", "id": "GO:0004842", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004842", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKP2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKP2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 9, "go_terms": [ { "name": "positive regulation of DNA-templated transcription", "id": "GO:0045893", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045893", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKP2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKP2" } ], "pmid": "" }, { "name": "Wnt signaling pathway", "id": "GO:0016055", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016055", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKP2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKP2" } ], "pmid": "" }, { "name": "regulation of canonical Wnt signaling pathway", "id": "GO:0060828", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060828", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKP2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKP2" } ], "pmid": "" }, { "name": "protein K48-linked ubiquitination", "id": "GO:0070936", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070936", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKP2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKP2" } ], "pmid": "" }, { "name": "non-canonical NF-kappaB signal transduction", "id": "GO:0038061", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0038061", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKP2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKP2" } ], "pmid": "" }, { "name": "negative regulation of T cell receptor signaling pathway", "id": "GO:0050860", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050860", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKP2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKP2" } ], "pmid": "" }, { "name": "positive regulation of circadian rhythm", "id": "GO:0042753", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042753", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKP2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKP2" } ], "pmid": "" }, { "name": "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process", "id": "GO:0031146", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031146", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKP2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKP2" } ], "pmid": "" }, { "name": "protein polyubiquitination", "id": "GO:0000209", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000209", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKP2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKP2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 127, "end_pos": 129, "annotation": "n_glycosylation_sequon" }, { "start_pos": 466, "end_pos": 468, "annotation": "n_glycosylation_sequon" }, { "start_pos": 67, "end_pos": 69, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JKP2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKP2" }, { "id": "PS50181", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50181" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F-box", "eco_id": "ECO_0000259", "start_pos": 204, "end_pos": 242, "start_aa": "Asp", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 127, "end_pos": 129 }, { "start_pos": 466, "end_pos": 468 }, { "start_pos": 67, "end_pos": 69 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", 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{ "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JLC6-1", "uniprot_ac": "A0A9J7JLC6", "uniprot_id": "A0A9J7JLC6_CRIGR", "mass": { "chemical_mass": 261492.0, "monoisotopic_mass": 261492.0 }, "refseq": { "ac": "XP_007641074", "name": "neuron navigator 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641074" }, "gene_names": [ { "name": "Nav2", "type": "recommended", "evidence": [ { "id": "A0A9J7JLC6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLC6" } ] }, { "name": "Nav2", "type": "synonym", "evidence": [ { "id": "XP_007641074", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641074" } ] } ], "protein_names": [ { "name": "Neuron navigator 2", "type": "recommended", "evidence": [ { "id": "A0A9J7JLC6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLC6/entry#names_and_taxonomy" } ] }, { "name": "3.6.4.12", "type": "synonym", "evidence": [ { "id": "A0A9J7JLC6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLC6/entry#names_and_taxonomy" } ] }, { "name": "neuron navigator 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007641074", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641074" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 354 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613888.1) and transcript sequence (IACG01052524.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007641074", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641074" } ] }, { "annotation": "Possesses 3' to 5' helicase activity and exonuclease activity. Involved in cytoskeleton organization. Required for neurite outgrowth in response to stimulation by all-trans retinoic acid (atRA). Involved in neuronal development, specifically in the development of different sensory organs. Important for brain and cerebellar development. Involved in the differentiation, migration and axonal extension of granule cells in the developing cerebellum. Involved in the development of the glossopharyngeal cranial nerve IX and the vagus cranial nerve X, possibly by influencing neuronal cell elongation or survival; influencing the efficiency of the baroreceptor reflex response to changes in blood pressure.", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MA12", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MA12#function" }, { "database": "UniProtKB", "id": "ARBA00094132", "url": "https://www.uniprot.org/uniprotkb/ARBA00094132#function" }, { "database": "UniProtKB", "id": "A0A8C2MAM6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MAM6#function" }, { "database": "UniProtKB", "id": "A0A9J7GU01", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GU01#function" }, { "database": "UniProtKB", "id": "A0A9J7GV04", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GV04#function" }, { "database": "UniProtKB", "id": "A0A9J7GW93", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GW93#function" }, { "database": "UniProtKB", "id": "A0A9J7GWM4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GWM4#function" }, { "database": "UniProtKB", "id": "A0A9J7GY02", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GY02#function" }, { "database": "UniProtKB", "id": "A0A9J7JLC6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLC6#function" }, { "database": "UniProtKB", "id": "A0A9J7JWK3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWK3#function" }, { "database": "UniProtKB", "id": "A0A9J7K3P5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3P5#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JLC6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLC6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Nav2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLC6", "locus": {} } ], "crossref": [ { "id": "cd21285", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21285", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100760394", "url": "https://www.ncbi.nlm.nih.gov/gene/100760394", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001715", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001715", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003593", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003593", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036872", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036872", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039041", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039041", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057126", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057126", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057568", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057568", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100760394", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760394", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MA12", "url": "https://www.orthodb.org/?gene=A0A8C2MA12", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MAM6", "url": "https://www.orthodb.org/?gene=A0A8C2MAM6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GV58", "url": "https://www.orthodb.org/?gene=A0A9J7GV58", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JLC6", "url": "https://www.orthodb.org/?gene=A0A9J7JLC6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12784", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12784", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12784:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12784:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00307", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00307", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23092", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23092", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25408", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25408", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007641074", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641074", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "13065", "url": "https://www.rhea-db.org/rhea/13065", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MA12", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MA12", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MA12-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MA12-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MAM6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MAM6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MAM6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MAM6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GU01", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GU01", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GU01-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GU01-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GV04", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GV04", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GV04-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GV04-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GV58", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GV58", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GV58-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GV58-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GW93", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GW93", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GW93-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GW93-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GWM4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GWM4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GWM4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GWM4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GY02", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GY02", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GY02-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GY02-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JLC6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLC6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JLC6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLC6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JWK3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWK3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JWK3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWK3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K3P5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3P5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K3P5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3P5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPAILVASKMKSGLPKPVHSAAPILHVPPARTGPQPCYLKLGSKVEVSKTAYTSQIPLKSQGLQEPTGEGLPLRKSSSLENGFDTQIYTDWANHYLAKSGHKRLIKDLQQDVTDGVLLAQIIQVVANDKIEDINGCPKNRSQMIENIDACLNFLAAKGINTQGLSAEEIRNGNLKAILGLFFSLSRYKQQQQQQPQKQHLSSSPLPPAGSQVAGAPSQCQAGIPQQQGLAAPQAPCQPLQPASHQQAKTQAEMQSRLPGPTARVAAAGSEAKTRAGSAAANNRRSQSFNNYDKSKPVTSPPPPLPPSNHEKEPLASSASSHPGMSENVSASLENSPAIPVNCSSAIPQPSMTSKPWRSKSLSVKHSATASMLSVKPTGPEVSRPTPEAMKPAPNNQKSMLEKLKLFNSKGGSKAGEGSTSRDTSCERLEILPSFEESEELEAASRALSTSSPASSSPKIALKGIAQRTFSRALTNKKSSPKGNEKEKEKQQREKEKEKEKGKDLTKRVSVTDRPDLKEDPKEELSGVSVTEMPKKSSKIASFIPKGGKLNSTKKEATAPSHSGIPKPGMKNMPGKSPSAATPPKEGERSRGKLSSGLPPQKPQLDSRHSSSSSSLASSEGKGPTGTTLNHSISSQTVSGSVGTTQTTGSNTVSVQLPQPQQQYNHPNTATVAPFLYRSQTDTEGNVTAESSSAGVSMEPSHYTKSGQPALEELTAEDPEARRLRTVKNIADLRQNLEETMSSLRGTQVTHSTLETTFDTNVTTEISGRSILSLTGRPTPLSWRLGQSSPRLQAGDAPSMGNGYPPRANASRFISAEAGRYVYSAPLRRQLASRGSSICHVDVSDKAGDDVDLEGISMDAPGYMSDGDVLSKNIRTDDITSGYMTDGGLGLYTRRLNRLPDGMAVVRETLQRNTSLGLGDADSWDDSSSVSSGISDTIDNLSTDDINTSSSISSYANTPASSRRNLDVQTDAEKHSQVERNSLWSGDDIKKSDGGSDSGVKMEPGSKWRRNPSDMSDESDKSVSGKKNPVISQTGSWRRGMTAEVGITMPRTKPSAPTGTLKTPGSGKTDDAKVSEKGRLSPKASQVKRSPSDAGRSSGDEAKKTLPSSSRMPTANSNSFGFKKQSGSAAGLAMITASGATITSRSATLGKIPKSSALVGRSTGRKTSMDGAPNQDDGYLSLSSRTNLQYRSLPRPSKSNSRNGAGNRCSTSSIDSNMSSKSAGLPVPKLREPSKTSLGSSLPGLVNQTDKEKGISSDNESVASCNSVKANPATQQVCGSAQATLQPGTKYSDVASPTLRRLFGGKPTKQVPIATAETMKSAVVISNPHATMTQQGNLESPSGSGVLSSGSSSPLYSKNVDLNQSPLASSPSSAHSGPSNSLTWGTSSSAVSKDGLGFQSVSSLHTSCESIDISLGSGGGLSHNSSPGPVTSTKEDSLLPFVRTSSVKTTLSESPLSSPAASPKFCRSTLPRKQDSDPHLDRNTLPKKGLRYTPTSQLRTQEDAKEWLRSHSAGGLQDTAANSPFSSGSSVTSPSGTRFNFSQLASPTTVTQMSLSNPTMLRTHSLSNADGQYDPYTDSRFRNSSMSLDEKSRTMSRSGSFRDGFEEVHGSSLSLVSSTSSIYSTPEEKCQSEIRKLRRELDASQEKVSALTTQLTANAHLVAAFEQSLGNMTIRLQSLTMTAEQKDSELNELRKTIELLKKQNAAAQAAINGVINTPELNCKGNGSSQTADLRIRRQHSSDSVSSINSATSHSSVGSNIESDSKKKKRKNWVNELRSSFKQAFGKKKSPKSASSHSDIEEMTDSSLPSSPKLPHNGSTGSTPLLRNAHSNSLISECMDSEAETVMQLRNELRDKEMKLTDIRLEALSSAHQLDQLREAMNRMQSEIEKLKAENDRLKSESQGSGCSRAPSQVSISASPRQSLGLSQHSLNLPESTSLDMLLDDTGECSARKEGGRHVKIVVSFQEAMKWKEDSRPHLFLIGCIGVSGKTKWDVLDGVVRRLFKEYIVHVDPVSQLGLNSDSVLGYSIGEIKRSNTSETPELLPCGYLVGENTTILVTVKGLTENSLDSLVFESLIPKPILQRYVSLLTEHRRIILSGPSGTGKTYLANRLSEYVVLREGRELTDGVIATFNVDHKSSKELRQYLSNLADQCNSENNAVDMPLVIILDNLHHVSSLGEIFNGLLNCKYHKCPYIIGTMNQATSSTPNLQLHHNFRWVLCANHTEPVKGFLGRFLRRKLMETEISGRVRNMELVKIINWIPKVWHHLNRFLEAHSSSDVTIGPRLFLSCPIDVDGSRVWFTDLWNYSIIPYLLEAVREGLQLYGRRAPWEDPAKWVMDTYPWAASPQQHEWPPLLQLRPEDVGFDGYSLPREGSTSKQVPPSDAEGDPLMNMLMRLQEAANYSSPQSYDSDSNSNSHHDDILDSSLESTL", "length": 2428, "header": "tr|A0A9J7JLC6-1|A0A9J7JLC6_CRIGR Isoform 1 of Neuron navigator 2 OS=Cricetulus griseus OX=10029 GN=Nav2 PE=3 SV=1 CANONICAL=A0A9J7JLC6-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MA12-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MA12/entry", "sequence": { "sequence": "MPAILVASKMKSGLPKPVHSAAPILHVPPARTGPQPCYLKLGSKVEVSKTAYTSQIPLKSQGLQEPTGEGLPLRKSSSLENGFDTQIYTDWANHYLAKSGHKRLIKDLQQDVTDGVLLAQIIQVVANDKIEDINGCPKNRSQMIENIDACLNFLAAKGINTQGLSAEEIRNGNLKAILGLFFSLSRYKQQQQQQPQKQHLSSSPLPPAGSQVAGAPSQCQAGIPQQQGLAAPQAPCQPLQPASHQQAKTQAEMQSRLPGPTARVAAAGSEAKTRAGSAAANNRRSQSFNNYDKSKPVTSPPPPLPPSNHEKEPLASSASSHPGMSENVSASLENSPAIPVNCSSAIPQPSMTSKPWRSKSLSVKHSATASMLSVKPTGPEVSRPTPEAMKPAPNNQKSMLEKLKLFNSKGGSKAGEGSTSRDTSCERLEILPSFEESEELEAASRALSTSSPASSSPKIALKGIAQRTFSRALTNKKSSPKGNEKEKEKQQREKEKEKEKGKDLTKRVSVTDRPDLKEDPKEELSGVSVTEMPKKSSKIASFIPKGGKLNSTKKEATAPSHSGIPKPGMKNMPGKSPSAATPPKEGERSRGKLSSGLPPQKPQLDSRHSSSSSSLASSEGKGPTGTTLNHSISSQTVSGSVGTTQTTGSNTVSVQLPQPQQQYNHPNTATVAPFLYRSQTDTEGNVTAESSSAGVSMEPSHYTKSGQPALEELTEDPEARRLRTVKNIADLRQNLEETMSSLRGTQVTHSTLETTFDTNVTTEISGRSILSLTGRPTPLSWRLGQSSPRLQAGDAPSMGNGYPPRANASRFISAEAGRYVYSAPLRRQLASRGSSICHVDVSDKAGDDVDLEGISMDAPGYMSDGDVLSKNIRTDDITSGYMTDGGLGLYTRRLNRLPDGMAVVRETLQRNTSLGLGDADSWDDSSSVSSGISDTIDNLSTDDINTSSSISSYANTPASSRRNLDVQTDAEKHSQVERNSLWSGDDIKKSDGGSDSGVKMEPGSKWRRNPSDMSDESDKSVSGKKNPVISQTGSWRRGMTAEVGITMPRTKPSAPTGTLKTPGSGKTDDAKVSEKGRLSPKASQVKRSPSDAGRSSGDEAKKTLPSSSRMPTANSNSFGFKKQSGSAAGLAMITASGATITSRSATLGKIPKSSALVGRSTGRKTSMDGAPNQDDGYLSLSSRTNLQYRSLPRPSKSNSRNGAGNRCSTSSIDSNMSSKSAGLPVPKLREPSKTSLGSSLPGLVNQTDKEKGISSDNESVASCNSVKANPATQQVCGSAQATLQPGTKYSDVASPTLRRLFGGKPTKQVPIATAETMKSAVVISNPHATMTQQGNLESPSGSGVLSSGSSSPLYSKNVDLNQSPLASSPSSAHSGPSNSLTWGTSSSAVSKDGLGFQSVSSLHTSCESIDISLGSGGGLSHNSSPGPVTSTKEDSLLPFVRTSSVKTTLSESPLSSPAASPKFCRSTLPRKQDSDPHLDRNTLPKKGLRYTPTSQLRTQEDAKEWLRSHSAGGLQDTAANSPFSSGSSVTSPSGTRFNFSQLASPTTVTQMSLSNPTMLRTHSLSNADGQYDPYTDSRFRNSSMSLDEKSRTMSRSGSFRDGFEEVHGSSLSLVSSTSSIYSTPEEKCQSEIRKLRRELDASQEKVSALTTQLTANAHLVAAFEQSLGNMTIRLQSLTMTAEQKDSELNELRKTIELLKKQNAAAQAAINGVINTPELNCKGNGSSQTADLRIRRQHSSDSVSSINSATSHSSVGSNIESDSKKKKRKNWVNELRSSFKQAFGKKKSPKSASSHSDIEEMTDSSLPSSPKLPHNGSTGSTPLLRNAHSNSLISECMDSEAETVMQLRNELRDKEMKLTDIRLEALSSAHQLDQLREAMNRMQSEIEKLKAENDRLKSESQGSGCSRAPSQVSISASPRQSLGLSQHSLNLPESTSLDMLLDDTGECSARKEGGRHVKIVVSFQEAMKWKEDSRPHLFLIGCIGVSGKTKWDVLDGVVRRLFKEYIVHVDPVSQLGLNSDSVLGYSIGEIKRSNTSETPELLPCGYLVGENTTILVTVKGLTENSLDSLVFESLIPKPILQRYVSLLTEHRRIILSGPSGTGKTYLANRLSEYVVLREGRELTDGVIATFNVDHKSSKELRQYLSNLADQCNSENNAVDMPLVIILDNLHHVSSLGEIFNGLLNCKYHKCPYIIGTMNQATSSTPNLQLHHNFRWVLCANHTEPVKGFLGRFLRRKLMETEISGRVRNMELVKIINWIPKVWHHLNRFLEAHSSSDVTIGPRLFLSCPIDVDGSRVWFTDLWNYSIIPYLLEAVREGLQLYGRRAPWEDPAKWVMDTYPWAASPQQHEWPPLLQLRPEDVGFDGYSLPREGSTSKQVPPSDAEGDPLMNMLMRLQEAANYSSPQSYDSDSNSNSHHDDILDSSLESTL", "length": 2427, "header": "tr|A0A8C2MA12-1|A0A9J7JLC6_CRIGR Computationally mapped isoform of Neuron navigator 2 OS=Cricetulus griseus OX=10029 GN=Nav2 PE=3 SV=1 CANONICAL=A0A9J7JLC6-1" }, "locus": {} }, { "isoform_ac": "A0A8C2MAM6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MAM6/entry", "sequence": { "sequence": "MPAILVASKMKSGLPKPVHSAAPILHVPPARTGPQPCYLKLGSKVEVSKTAYTSQIPLKSQGLQEPTGEGLPLRKSSSLENGFDTQIYTDWANHYLAKSGHKRLIKDLQQDVTDGVLLAQIIQVVANDKIEDINGCPKNRSQMIENIDACLNFLAAKGINTQGLSAEEIRNGNLKAILGLFFSLSRYKQQQQQQPQKQHLSSSPLPPAGSQVAGAPSQCQAGIPQQQGLAAPQAPCQPLQPASHQQAKTQAEMQSRLPGPTARVAAAGSEAKTRAGSAAANNRRSQSFNNYDKSKPVTSPPPPLPPSNHEKEPLASSASSHPGMSENVSASLENSPAIPVNCSSAIPQPSMTSKPWRSKSLSVKHSATASMLSVKPTGPEVSRPTPEAMKPAPNNQKSMLEKLKLFNSKGGSKAGEGSTSRDTSCERLEILPSFEESEELEAASRALSTSSPASSSPKIALKGIAQRTFSRALTNKKSSPKGNEKEKEKQQREKEKEKEKGKDLTKRVSVTDRPDLKEDPKEELSGVSVTEMPKKSSKIASFIPKGGKLNSTKKEATAPSHSGIPKPGMKNMPGKSPSAATPPKEGERSRGKLSSGLPPQKPQLDSRHSSSSSSLASSEGKGPTGTTLNHSISSQTVSGSVGTTQTTGSNTVSVQLPQPQQQYNHPNTATVAPFLYRSQTDTEGNVTAESSSAGVSMEPSHYTKSGQPALEELTAEDPEARRLRTVKNIADLRQNLEETMSSLRGTQVTHSTLETTFDTNVTTEISGRSILSLTGRPTPLSWRLGQSSPRLQAGDAPSMGNGYPPRANASRFISAEAGRYVYSAPLRRQLASRGSSICHVDVSDKAGDDVDLEGISMDAPGYMSDGDVLSKNIRTDDITSGYMTDGGLGLYTRRLNRLPDGMAVVRETLQRNTSLGLGDADSWDDSSSVSSGISDTIDNLSTDDINTSSSISSYANTPASSRRNLDVQTDAEKHSQVERNSLWSGDDIKKSDGGSDSGVKMEPGSKWRRNPSDMSDESDKSVSGKKNPVISQTGSWRRGMTAEVGITMPRTKPSAPTGTLKTPGSGKTDDAKVSEKGRLSPKASQVKRSPSDAGRSSGDEAKKTLPSSSRMPTANSNSFGFKKQSGSAAGLAMITASGATITSRSATLGKIPKSSALVGRSTGRKTSMDGAPNQDDGYLSLSSRTNLQYRSLPRPSKSNSRNGAGNRCSTSSIDSNMSSKSAGLPVPKLREPSKTSLGSSLPGLVNQTDKEKGISSDNESVASCNSVKANPATQQVCGSAQATLQPGTKYSDVASPTLRRLFGGKPTKQVPIATAETMKSAVVISNPHATMTQQGNLESPSGSGVLSSGSSSPLYSKNVDLNQSPLASSPSSAHSGPSNSLTWGTSSSAVSKDGLGFQSVSSLHTSCESIDISLGSGGGLSHNSSPGPVTSTKEDSLLPFVRTSSVKTTLSESPLSSPAASPKFCRSTLPRKQDSDPHLDRNTLPKKGLRYTPTSQLRTQEDAKEWLRSHSAGGLQDTAANSPFSSGSSVTSPSGTRFNFSQLASPTTVTQMSLSNPTMLRTHSLSNADGQYDPYTDSRFRNSSMSLDEKSRTMSRSGSFRDGFEEVHGSSLSLVSSTSSIYSTPEEKCQSEIRKLRRELDASQEKVSALTTQLTANAHLVAAFEQSLGNMTIRLQSLTMTAEQKDSELNELRKTIELLKKQNAAAQAAINGVINTPELNCKGNGSSQTADLRIRRQHSSDSVSSINSATSHSSVGSNIESDSKKKKRKNWLRSSFKQAFGKKKSPKSASSHSDIEEMTDSSLPSSPKLPHNGSTGSTPLLRNAHSNSLISECMDSEAETVMQLRNELRDKEMKLTDIRLEALSSAHQLDQLREAMNRMQSEIEKLKAENDRLKSESQGSGCSRAPSQVSISASPRQSLGLSQHSLNLPESTSLDMLLDDTGECSARKEGGRHVKIVVSFQEAMKWKEDSRPHLFLIGCIGVSGKTKWDVLDGVVRRLFKEYIVHVDPVSQLGLNSDSVLGYSIGEIKRSNTSETPELLPCGYLVGENTTILVTVKGLTENSLDSLVFESLIPKPILQRYVSLLTEHRRIILSGPSGTGKTYLANRLSEYVVLREGRELTDGVIATFNVDHKSSKELRQYLSNLADQCNSENNAVDMPLVIILDNLHHVSSLGEIFNGLLNCKYHKCPYIIGTMNQATSSTPNLQLHHNFRWVLCANHTEPVKGFLGRFLRRKLMETEISGRVRNMELVKIINWIPKVWHHLNRFLEAHSSSDVTIGPRLFLSCPIDVDGSRVWFTDLWNYSIIPYLLEAVREGLQLYGRRAPWEDPAKWVMDTYPWAASPQQHEWPPLLQLRPEDVGFDGYSLPREGSTSKQVPPSDAEGDPLMNMLMRLQEAANYSSPQSYDSDSNSNSHHDDILDSSLESTL", "length": 2425, "header": "tr|A0A8C2MAM6-1|A0A9J7JLC6_CRIGR Computationally mapped isoform of Neuron navigator 2 OS=Cricetulus griseus OX=10029 GN=Nav2 PE=3 SV=1 CANONICAL=A0A9J7JLC6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GU01-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GU01/entry", "sequence": { "sequence": "MPAILVASKMKSGLPKPVHSAAPILHVPPARTGPQPCYLKLGSKVEVSKTAYTSQIPLKSQGLQEPTGEGLPLRKSSSLENGFDTQIYTDWANHYLAKSGHKRLIKDLQQDVTDGVLLAQIIQVVANDKIEDINGCPKNRSQMIENIDACLNFLAAKGINTQGLSAEEIRNGNLKAILGLFFSLSRYKQQQQQQPQKQHLSSSPLPPAGSQVAGAPSQCQAGIPQQQGLAAPQAPCQPLQPASHQQAKTQAEMQSRLPGPTARVAAAGSEAKTRAGSAAANNRRSQSFNNYDKSKPVTSPPPPLPPSNHEKEPLASSASSHPGMSENVSASLENSPAIPVNCSSAIPQPSMTSKPWRSKSLSVKHSATASMLSVKPTGPEVSRPTPEAMKPAPNNQKSMLEKLKLFNSKGGSKAGEGSTSRDTSCERLEILPSFEESEELEAASRALSTSSPASSSPKIALKGIAQRTFSRALTNKKSSPKGNEKEKEKQQREKEKEKEKGKDLTKRVSVTDRPDLKEDPKEELSGVSVTEMPKKSSKIASFIPKGGKLNSTKKEATAPSHSGIPKPGMKNMPGKSPSAATPPKEGERSRGKLSSGLPPQKPQLDSRHSSSSSSLASSEGKGPTGTTLNHSISSQTVSGSVGTTQTTGSNTVSVQLPQPQQQYNHPNTATVAPFLYRSQTDTEGNVTAESSSAGVSMEPSHYTKSGQPALEELTAEDPEARRLRTVKNIADLRQNLEETMSSLRGTQVTHSTLETTFDTNVTTEISGRSILSLTGRPTPLSWRLGQSSPRLQAGDAPSMGNGYPPRANASRFISAEAGRYVYSAPLRRQLASRGSSICHVDVSDKAGDDVDLEGISMDAPGYMSDGDVLSKNIRTDDITSGYMTDGGLGLYTRRLNRLPDGMAVVRETLQRNTSLGLGDADSWDDSSSVSSGISDTIDNLSTDDINTSSSISSYANTPASSRRNLDVQTDAEKHSQVERNSLWSGDDIKKSDGGSDSGVKMEPGSKWRRNPSDMSDESDKSVSGKKNPVISQTGSWRRGMTAEVGITMPRTKPSAPTGTLKTPGSGKTDDAKVSEKGRLSPKASQVKRSPSDAGRSSGDEAKKTLPSSSRMPTANSNSFGFKKQSGSAAGLAMITASGATITSRSATLGKIPKSSALVGRSTGRKTSMDGAPNQDDGYLSLSSRTNLQYRSLPRPSKSNSRNGAGNRCSTSSIDSNMSSKSAGLPVPKLREPSKTSLGSSLPGLVNQTDKEKGISSDNESVASCNSVKANPATQQVCGSAQATLQPGTKYSDVASPTLRRLFGGKPTKQVPIATAETMKSAVVISNPHATMTQQGNLESPSGSGVLSSGSSSPLYSKNVDLNQSPLASSPSSAHSGPSNSLTWGTSSSAVSKDGLGFQSVSSLHTSCESIDISLGSGGGLSHNSSPGPVTSTKEDSLLPFVRTSSVKTTLSESPLSSPAASPKFCRSTLPRKQDRYTPTSQLRTQEDAKEWLRSHSAGGLQDTAANSPFSSGSSVTSPSGTRFNFSQLASPTTVTQMSLSNPTMLRTHSLSNADGQYDPYTDSRFRNSSMSLDEKSRTMSRSGSFRDGFEEVHGSSLSLVSSTSSIYSTPEEKCQSEIRKLRRELDASQEKVSALTTQLTANAHLVAAFEQSLGNMTIRLQSLTMTAEQKDSELNELRKTIELLKKQNAAAQAAINGVINTPELNCKGNGSSQTADLRIRRQHSSDSVSSINSATSHSSVGSNIESDSKKKKRKNWVNELRSSFKQAFGKKKSPKSASSHSDIEEMTDSSLPSSPKLPHNGSTGSTPLLRNAHSNSLISECMDSEAETVMQLRNELRDKEMKLTDIRLEALSSAHQLDQLREAMNRMQSEIEKLKAENDRLKSESQGSGCSRAPSQVSISASPRQSLGLSQHSLNLPESTSLDMLLDDTGECSARKEGGRHVKIVVSFQEAMKWKEDSRPHLFLIGCIGVSGKTKWDVLDGVVRRLFKEYIVHVDPVSQLGLNSDSVLGYSIGEIKRSNTSETPELLPCGYLVGENTTILVTVKGLTENSLDSLVFESLIPKPILQRYVSLLTEHRRIILSGPSGTGKTYLANRLSEYVVLREGRELTDGVIATFNVDHKSSKELRQYLSNLADQCNSENNAVDMPLVIILDNLHHVSSLGEIFNGLLNCKYHKCPYIIGTMNQATSSTPNLQLHHNFRWVLCANHTEPVKGFLGRFLRRKLMETEISGRVRNMELVKIINWIPKVWHHLNRFLEAHSSSDVTIGPRLFLSCPIDVDGSRVWFTDLWNYSIIPYLLEAVREGLQLYGRRAPWEDPAKWVMDTYPWAASPQQHEWPPLLQLRPEDVGFDGYSLPREGSTSKQVPPSDAEGDPLMNMLMRLQEAANYSSPQSYDSDSNSNSHHDDILDSSLESTL", "length": 2413, "header": "tr|A0A9J7GU01-1|A0A9J7GU01_CRIGR Computationally mapped isoform of Neuron navigator 2 OS=Cricetulus griseus OX=10029 GN=Nav2 PE=3 SV=1 CANONICAL=A0A9J7JLC6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GV04-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GV04/entry", "sequence": { "sequence": "MPAILVASKMKSGLPKPVHSAAPILHVPPARTGPQPCYLKLGSKVEVSKTAYTSQIPLKSQGLQEPTGEGLPLRKSSSLENGFDTQIYTDWANHYLAKSGHKRLIKDLQQDVTDGVLLAQIIQVVANDKIEDINGCPKNRSQMIENIDACLNFLAAKGINTQGLSAEEIRNGNLKAILGLFFSLSRYKQQQQQQPQKQHLSSSPLPPAGSQVAGAPSQCQAGIPQQQGLAAPQAPCQPLQPASHQQAKTQAEMQSRLPGPTARVAAAGSEAKTRAGSAAANNRRSQSFNNYDKSKPVTSPPPPLPPSNHEKEPLASSASSHPGMSENVSASLENSPAIPVNCSSAIPQPSMTSKPWRSKSLSVKHSATASMLSVKPTGPEVSRPTPEAMKPAPNNQKSMLEKLKLFNSKGGSKAGEGSTSRDTSCERLEILPSFEESEELEAASRALSTSSPASSSPKIALKGIAQRTFSRALTNKKSSPKGNEKEKEKQQREKEKEKEKGKDLTKRVSVTDRPDLKEDPKEELSGVSVTEMPKKSSKIASFIPKGGKLNSTKKEATAPSHSGIPKPGMKNMPGKSPSAATPPKEGERSRGKLSSGLPPQKPQLDSRHSSSSSSLASSEGKGPTGTTLNHSISSQTVSGSVGTTQTTGSNTVSVQLPQPQQQYNHPNTATVAPFLYRSQTDTEGNVTAESSSAGVSMEPSHYTKSGQPALEELTAEDPEARRLRTVKNIADLRQNLEETMSSLRGTQVTHSTLETTFDTNVTTEISGRSILSLTGRPTPLSWRLGQSSPRLQAGDAPSMGNGYPPRANASRFISAEAGRYVYSAPLRRQLASRGSSICHVDVSDKAGDDVDLEGISMDAPGYMSDGDVLSKNIRTDDITSGYMTDGGLGLYTRRLNRLPDGMAVVRETLQRNTSLGLGDADSWDDSSSVSSGISDTIDNLSTDDINTSSSISSYANTPASSRRNLDVQTDAEKHSQVERNSLWSGDDIKKSDGGSDSGVKMEPGSKWRRNPSDMSDESDKSVSGKKNPVISQTGSWRRGMTAEVGITMPRTKPSAPTGTLKTPGSGKTDDAKVSEKGRLSPKASQVKRSPSDAGRSSGDEAKKTLPSSSRMPTANSNSFGFKKQSGSAAGLAMITASGATITSRSATLGKIPKSSALVGRSTGRKTSMDGAPNQDDGYLSLSSRTNLQYRSLPRPSKSNSRNGAGNRCSTSSIDSNMSSKSAGLPVPKLREPSKTSLGSSLPGLVNQTDKEKGISSDNESVASCNSVKANPATQQVCGSAQATLQPGTKYSDVASPTLRRLFGGKPTKQVPIATAETMKSAVVISNPHATMTQQGNLESPSGSGVLSSGSSSPLYSKNVDLNQSPLASSPSSAHSGPSNSLTWGTSSSAVSKDGLGFQSVSSLHTSCESIDISLGSGGGLSHNSSPGPVTSTKEDSLLPFVRTSSVKTTLSESDPHLDRNTLPKKGLRYTPTSQLRTQEDAKEWLRSHSAGGLQDTAANSPFSSGSSVTSPSGTRFNFSQLASPTTVTQMSLSNPTMLRTHSLSNADGQYDPYTDSRFRNSSMSLDEKSRTMSRSGSFRDGFEEVHGSSLSLVSSTSSIYSTPEEKCQSEIRKLRRELDASQEKVSALTTQLTANAHLVAAFEQSLGNMTIRLQSLTMTAEQKDSELNELRKTIELLKKQNAAAQAAINGVINTPELNCKGNGSSQTADLRIRRQHSSDSVSSINSATSHSSVGSNIESDSKKKKRKNWLRSSFKQAFGKKKSPKSASSHSDIEEMTDSSLPSSPKLPHNGSTGSTPLLRNAHSNSLISECMDSEAETVMQLRNELRDKEMKLTDIRLEALSSAHQLDQLREAMNRMQSEIEKLKAENDRLKSESQGSGCSRAPSQVSISASPRQSLGLSQHSLNLPESTSLDMLLDDTGECSARKEGGRHVKIVVSFQEAMKWKEDSRPHLFLIGCIGVSGKTKWDVLDGVVRRLFKEYIVHVDPVSQLGLNSDSVLGYSIGEIKRSNTSETPELLPCGYLVGENTTILVTVKGLTENSLDSLVFESLIPKPILQRYVSLLTEHRRIILSGPSGTGKTYLANRLSEYVVLREGRELTDGVIATFNVDHKSSKELRQYLSNLADQCNSENNAVDMPLVIILDNLHHVSSLGEIFNGLLNCKYHKCPYIIGTMNQATSSTPNLQLHHNFRWVLCANHTEPVKGFLGRFLRRKLMETEISGRVRNMELVKIINWIPKVWHHLNRFLEAHSSSDVTIGPRLFLSCPIDVDGSRVWFTDLWNYSIIPYLLEAVREGLQLYGRRAPWEDPAKWVMDTYPWAASPQQHEWPPLLQLRPEDVGFDGYSLPREGSTSKQVPPSDAEGDPLMNMLMRLQEAANYSSPQSYDSDSNSNSHHDDILDSSLESTL", "length": 2403, "header": "tr|A0A9J7GV04-1|A0A9J7GV04_CRIGR Computationally mapped isoform of Neuron navigator 2 OS=Cricetulus griseus OX=10029 GN=Nav2 PE=3 SV=1 CANONICAL=A0A9J7JLC6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GV58-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GV58/entry", "sequence": { "sequence": "MIENIDACLNFLAAKGINTQGLSAEEIRNGNLKAILGLFFSLSRYKQQQQQQPQKQHLSSSPLPPAGSQVAGAPSQCQAGIPQQQGLAAPQAPCQPLQPASHQQAKTQAEMQSRLPGPTARVAAAGSEAKTRAGSAAANNRRSQSFNNYDKSKPVTSPPPPLPPSNHEKEPLASSASSHPGMSENVSASLENSPAIPVNCSSAIPQPSMTSKPWRSKSLSVKHSATASMLSVKPTGPEVSRPTPEAMKPAPNNQKSMLEKLKLFNSKGGSKAGEGSTSRDTSCERLEILPSFEESEELEAASRALSTSSPASSSPKIALKGIAQRTFSRALTNKKSSPKGNEKEKEKQQREKEKEKEKGKDLTKRVSVTDRPDLKEDPKEELSGVSVTEMPKKSSKIASFIPKGGKLNSTKKEATAPSHSGIPKPGMKNMPGKSPSAATPPKEGERSRGKLSSGLPPQKPQLDSRHSSSSSSLASSEGKGPTGTTLNHSISSQTVSGSVGTTQTTGSNTVSVQLPQPQQQYNHPNTATVAPFLYRSQTDTEGNVTAESSSAGVSMEPSHYTKSGQPALEELTAEDPEARRLRTVKNIADLRQNLEETMSSLRGTQVTHSTLETTFDTNVTTEISGRSILSLTGRPTPLSWRLGQSSPRLQAGDAPSMGNGYPPRANASRFISAEAGRYVYSAPLRRQLASRGSSICHVDVSDKAGDDVDLEGISMDAPGYMSDGDVLSKNIRTDDITSGYMTDGGLGLYTRRLNRLPDGMAVVRETLQRNTSLGLGDADSWDDSSSVSSGISDTIDNLSTDDINTSSSISSYANTPASSRRNLDVQTDAEKHSQVERNSLWSGDDIKKSDGGSDSGVKMEPGSKWRRNPSDMSDESDKSVSGKKNPVISQTGSWRRGMTAEVGITMPRTKPSAPTGTLKTPGSGKTDDAKVSEKGRLSPKASQVKRSPSDAGRSSGDEAKKTLPSSSRMPTANSNSFGFKKQSGSAAGLAMITASGATITSRSATLGKIPKSSALVGRSTGRKTSMDGAPNQDDGYLSLSSRTNLQYRSLPRPSKSNSRNGAGNRCSTSSIDSNMSSKSAGLPVPKLREPSKTSLGSSLPGLVNQTDKEKGISSDNESVASCNSVKANPATQQVCGSAQATLQPGTKYSDVASPTLRRLFGGKPTKQVPIATAETMKSAVVISNPHATMTQQGNLESPSGSGVLSSGSSSPLYSKNVDLNQSPLASSPSSAHSGPSNSLTWGTSSSAVSKDGLGFQSVSSLHTSCESIDISLGSGGGLSHNSSPGPVTSTKEDSLLPFVRTSSVKTTLSESPLSSPAASPKFCRSTLPRKQDSDPHLDRNTLPKKGLRYTPTSQLRTQEDAKEWLRSHSAGGLQDTAANSPFSSGSSVTSPSGTRFNFSQLASPTTVTQMSLSNPTMLRTHSLSNADGQYDPYTDSRFRNSSMSLDEKSRTMSRSGSFRDGFEEVHGSSLSLVSSTSSIYSTPEEKCQSEIRKLRRELDASQEKVSALTTQLTANAHLVAAFEQSLGNMTIRLQSLTMTAEQKDSELNELRKTIELLKKQNAAAQAAINGVINTPELNCKGNGSSQTADLRIRRQHSSDSVSSINSATSHSSVGSNIESDSKKKKRKNWVNELRSSFKQAFGKKKSPKSASSHSDIEEMTDSSLPSSPKLPHNGSTGSTPLLRNAHSNSLISECMDSEAETVMQLRNELRDKEMKLTDIRLEALSSAHQLDQLREAMNRMQSEIEKLKAENDRLKSESQGSGCSRAPSQVSISASPRQSLGLSQHSLNLPESTSLDMLLDDTGECSARKEGGRHVKIVVSFQEAMKWKEDSRPHLFLIGCIGVSGKTKWDVLDGVVRRLFKEYIVHVDPVSQLGLNSDSVLGYSIGEIKRSNTSETPELLPCGYLVGENTTILVTVKGLTENSLDSLVFESLIPKPILQRYVSLLTEHRRIILSGPSGTGKTYLANRLSEYVVLREGRELTDGVIATFNVDHKSSKELRQYLSNLADQCNSENNAVDMPLVIILDNLHHVSSLGEIFNGLLNCKYHKCPYIIGTMNQATSSTPNLQLHHNFRWVLCANHTEPVKGFLGRFLRRKLMETEISGRVRNMELVKIINWIPKVWHHLNRFLEAHSSSDVTIGPRLFLSCPIDVDGSRVWFTDLWNYSIIPYLLEAVREGLQLYGRRAPWEDPAKWVMDTYPWAASPQQHEWPPLLQLRPEDVGFDGYSLPREGSTSKQVPPSDAEGDPLMNMLMRLQEAANYSSPQSYDSDSNSNSHHDDILDSSLESTL", "length": 2286, "header": "tr|A0A9J7GV58-1|A0A9J7GV58_CRIGR Computationally mapped isoform of Neuron navigator 2 isoform X11 OS=Cricetulus griseus OX=10029 GN=Nav2 PE=3 SV=1 CANONICAL=A0A9J7JLC6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GW93-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GW93/entry", "sequence": { "sequence": "MPAILVASKMKSGLPKPVHSAAPILHVPPARTGPQPCYLKLGSKVEVSKTAYTSQIPLKSQGLQEPTGEGLPLRKSSSLENGFDTQIYTDWANHYLAKSGHKRLIKDLQQDVTDGVLLAQIIQVVANDKIEDINGCPKNRSQMIENIDACLNFLAAKGINTQGLSAEEIRNGNLKAILGLFFSLSRYKQQQQQQPQKQHLSSSPLPPAGSQVAGAPSQCQAGIPQQQGLAAPQAPCQPLQPASHQQAKTQAEMQSRLPGPTARVAAAGSEAKTRAGSAAANNRRSQSFNNYDKSKPVTSPPPPLPPSNHEKEPLASSASSHPGMSENVSASLENSPAIPVNCSSAIPQPSMTSKPWRSKSLSVKHSATASMLSVKPTGPEVSRPTPEAMKPAPNNQKSMLEKLKLFNSKGGSKAGEGSTSRDTSCERLEILPSFEESEELEAASRALSTSSPASSSPKIALKGIAQRTFSRALTNKKSSPKGNEKEKEKQQREKEKEKEKGKDLTKRVSVTDRPDLKEDPKEELSGVSVTEMPKKSSKIASFIPKGGKLNSTKKEATAPSHSGIPKPGMKNMPGKSPSAATPPKEGERSRGKLSSGLPPQKPQLDSRHSSSSSSLASSEGKGPTGTTLNHSISSQTVSGSVGTTQTTGSNTVSVQLPQPQQQYNHPNTATVAPFLYRSQTDTEGNVTAESSSAGVSMEPSHYTKSGQPALEELTAEDPEARRLRTVKNIADLRQNLEETMSSLRGTQVTHSTLETTFDTNVTTEISGRSILSLTGRPTPLSWRLGQSSPRLQAGDAPSMGNGYPPRANASRFISAEAGRYVYSAPLRRQLASRGSSICHVDVSDKAGDDVDLEGISMDAPGYMSDGDVLSKNIRTDDITSGYMTDGGLGLYTRRLNRLPDGMAVVRETLQRNTSLGLGDADSWDDSSSVSSGISDTIDNLSTDDINTSSSISSYANTPASSRRNLDVQVERNSLWSGDDIKKSDGGSDSGVKMEPGSKWRRNPSDMSDESDKSVSGKKNPVISQTGSWRRGMTAEVGITMPRTKPSAPTGTLKTPGSGKTDDAKVSEKGRLSPKASQVKRSPSDAGRSSGDEAKKTLPSSSRMPTANSNSFGFKKQSGSAAGLAMITASGATITSRSATLGKIPKSSALVGRSTGRKTSMDGAPNQDDGYLSLSSRTNLQYRSLPRPSKSNSRNGAGNRCSTSSIDSNMSSKSAGLPVPKLREPSKTSLGSSLPGLVNQTDKEKGISSDNESVASCNSVKANPATQQVCGSAQATLQPGTKYSDVASPTLRRLFGGKPTKQVPIATAETMKSAVVISNPHATMTQQGNLESPSGSGVLSSGSSSPLYSKNVDLNQSPLASSPSSAHSGPSNSLTWGTSSSAVSKDGLGFQSVSSLHTSCESIDISLGSGGGLSHNSSPGPVTSTKEDSLLPFVRTSSVKTTLSESPLSSPAASPKFCRSTLPRKQDSDPHLDRNTLPKKGLRYTPTSQLRTQEDAKEWLRSHSAGGLQDTAANSPFSSGSSVTSPSGTRFNFSQLASPTTVTQMSLSNPTMLRTHSLSNADGQYDPYTDSRFRNSSMSLDEKSRTMSRSGSFRDGFEEVHGSSLSLVSSTSSIYSTPEEKCQSEIRKLRRELDASQEKVSALTTQLTANAHLVAAFEQSLGNMTIRLQSLTMTAEQKDSELNELRKTIELLKKQNAAAQAAINGVINTPELNCKGNGSSQTADLRIRRQHSSDSVSSINSATSHSSVGSNIESDSKKKKRKNWVNELRSSFKQAFGKKKSPKSASSHSDIEEMTDSSLPSSPKLPHNGSTGSTPLLRNAHSNSLISECMDSEAETVMQLRNELRDKEMKLTDIRLEALSSAHQLDQLREAMNRMQSEIEKLKAENDRLKSESQGSGCSRAPSQVSISASPRQSLGLSQHSLNLPESTSLDMLLDDTGECSARKEGGRHVKIVVSFQEAMKWKEDSRPHLFLIGCIGVSGKTKWDVLDGVVRRLFKEYIVHVDPVSQLGLNSDSVLGYSIGEIKRSNTSETPELLPCGYLVGENTTILVTVKGLTENSLDSLVFESLIPKPILQRYVSLLTEHRRIILSGPSGTGKTYLANRLSEYVVLREGRELTDGVIATFNVDHKSSKELRQYLSNLADQCNSENNAVDMPLVIILDNLHHVSSLGEIFNGLLNCKYHKCPYIIGTMNQATSSTPNLQLHHNFRWVLCANHTEPVKGFLGRFLRRKLMETEISGRVRNMELVKIINWIPKVWHHLNRFLEAHSSSDVTIGPRLFLSCPIDVDGSRVWFTDLWNYSIIPYLLEAVREGLQLYGRRAPWEDPAKWVMDTYPWAASPQQHEWPPLLQLRPEDVGFDGYSLPREGSTSKQVPPSDAEGDPLMNMLMRLQEAANYSSPQSYDSDSNSNSHHDDILDSSLESTL", "length": 2420, "header": "tr|A0A9J7GW93-1|A0A9J7GW93_CRIGR Computationally mapped isoform of Neuron navigator 2 OS=Cricetulus griseus OX=10029 GN=Nav2 PE=3 SV=1 CANONICAL=A0A9J7JLC6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GWM4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GWM4/entry", "sequence": { "sequence": "MPAILVASKMKSGLPKPVHSAAPILHVPPARTGPQPCYLKLGSKVEVSKTAYTSQIPLKSQGLQEPTGEGLPLRKSSSLENGFDTQIYTDWANHYLAKSGHKRLIKDLQQDVTDGVLLAQIIQVVANDKIEDINGCPKNRSQMIENIDACLNFLAAKGINTQGLSAEEIRNGNLKAILGLFFSLSRYKQQQQQQPQKQHLSSSPLPPAGSQVAGAPSQCQAGIPQQQGLAAPQAPCQPLQPASHQQAKTQAEMQSRLPGPTARVAAAGSEAKTRAGSAAANNRRSQSFNNYDKSKPVTSPPPPLPPSNHEKEPLASSASSHPGMSENVSASLENSPAIPVNCSSAIPQPSMTSKPWRSKSLSVKHSATASMLSVKPTGPEVSRPTPEAMKPAPNNQKSMLEKLKLFNSKGGSKAGEGSTSRDTSCERLEILPSFEESEELEAASRALSTSSPASSSPKIALKGIAQRTFSRALTNKKSSPKGNEKEKEKQQREKEKEKEKGKDLTKRVSVTDRPDLKEDPKEELSGVSVTEMPKKSSKIASFIPKGGKLNSTKKEATAPSHSGIPKPGMKNMPGKSPSAATPPKEGERSRGKLSSGLPPQKPQLDSRHSSSSSSLASSEGKGPTGTTLNHSISSQTVSGSVGTTQTTGSNTVSVQLPQPQQQYNHPNTATVAPFLYRSQTDTEGNVTAESSSAGVSMEPSHYTKSGQPALEELTAEDPEARRLRTVKNIADLRQNLEETMSSLRGTQVTHSTLETTFDTNVTTEISGRSILSLTGRPTPLSWRLGQSSPRLQAGDAPSMGNGYPPRANASRFISAEAGRYVYSAPLRRQLASRGSSICHVDVSDKAGDDVDLEGISMDAPGYMSDGDVLSKNIRTDDITSGYMTDGGLGLYTRRLNRLPDGMAVVRETLQRNTSLGLGDADSWDDSSSVSSGISDTIDNLSTDDINTSSSISSYANTPASSRRNLDVQTDAEKHSQVERNSLWSGDDIKKSDGGSDSGVKMEPGSKWRRNPSDMSDESDKSVSGKKNPVISQTGSWRRGMTAEVGITMPRTKPSAPTGTLKTPGSGKTDDAKVSEKGRLSPKASQVKRSPSDAGRSSGDEAKKTLPSSSRMPTANSNSFGFKKQSGSAAGLAMITASGATITSRSATLGKIPKSSALVGRSTGRKTSMDGAPNQDDGYLSLSSRTNLQYRSLPRPSKSNSRNGAGNRCSTSSIDSNMSSKSAGLPVPKLREPSKTSLGSSLPGLVNQTDKEKGISSDNESVASCNSVKANPATQQVCGSAQATLQPGTKYSDVASPTLRRLFGGKPTKQVPIATAETMKSAVVISNPHATMTQQGNLESPSGSGVLSSGSSSPLYSKNVDLNQSPLASSPSSAHSGPSNSLTWGTSSSAVSKDGLGFQSVSSLHTSCESIDISLGSGGGLSHNSSPGPVTSTKEDSLLPFVRTSSVKTTLSESPLSSPAASPKFCRSTLPRKQDSDPHLDRNTLPKKGLRYTPTSQLRTQEDAKEWLRSHSAGGLQDTAANSPFSSGSSVTSPSGTRFNFSQLASPTTVTQMSLSNPTMLRTHSLSNADGQYDPYTDSRFRNSSMSLDEKSRTMSRSGSFRDGFEEVHGSSLSLVSSTSSIYSTPEEKCQSEIRKLRRELDASQEKVSALTTQLTANAHLVAAFEQSLGNMTIRLQSLTMTAEQKDSELNELRKTIELLKKQNAAAQAAINGVINTPELNCKGNGSSQTADLRIRRQHSSDSVSSINSATSHSSVGSNIESDSKKKKRKNWVNELRSSFKQAFGKKKSPKSASSHSDIEEMTDSSLPSSPKLPHNGSTGSTPLLRNAHSNSLISECMDSEAETVMQLRNELRDKEMKLTDIRLEALSSAHQLDQLREAMNRMQSEIEKLKAENDRLKSESQGSGCSRAPSQVSISASPRQSLGLSQHSLNLPESTSLDMLLDDTGECSARKEGGRHVKIVVSFQEAMKWKEDSRPHLFLIGCIGVSGKTKWDVLDGVVRRLFKEYIVHVDPVSQLGLNSDSVLGYSIGEIKRSNTSETPELLPCGYLVGENTTILVTVKGLTENSLDSLVFESLIPKPILQRYVSLLTEHRRIILSGPSGTGKTYLANRLSEYVVLREGRELTDGVIATFNVDHKSSKELRQYLSNLADQCNSENNAVDMPLVIILDNLHHVSSLGEIFNGLLNCKYHKCPYIIGTMNQATSSTPNLQLHHNFRWVLCANHTEPVKGFLGRFLRRKLMETEISGRVRNMELVKIINWIPKVWHHLNRFLEAHSSSDVTIGPRLFLSCPIDVDGSRVWFTDLWNYSIIPYLLEAVREGLQLYGRRAPWEDPAKWVMDTYPWAASPQQHEWPPLLQLRPEDVGFDGYSLPREGSTSKQVPPSDAEGDPLANDEPAQSPAPASVAATTEVQQRALLHYSMEESTLKKGQQ", "length": 2427, "header": "tr|A0A9J7GWM4-1|A0A9J7GWM4_CRIGR Computationally mapped isoform of Neuron navigator 2 OS=Cricetulus griseus OX=10029 GN=Nav2 PE=3 SV=1 CANONICAL=A0A9J7JLC6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GY02-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GY02/entry", "sequence": { "sequence": "MPAILVASKMKSGLPKPVHSAAPILHVPPARTGPQPCYLKLGSKVEVSKTAYTSQIPLKSQGLQEPTGEGLPLRKSSSLENGFDTQIYTDWANHYLAKSGHKRLIKDLQQDVTDGVLLAQIIQVVANDKIEDINGCPKNRSQMIENIDACLNFLAAKGINTQGLSAEEIRNGNLKAILGLFFSLSRYKQQQQQQPQKQHLSSSPLPPAGSQVAGAPSQCQAGIPQQQGLAAPQAPCQPLQPASHQQAKTQAEMQSRLPGPTARVAAAGSEAKTRAGSAAANNRRSQSFNNYDKSKPVTSPPPPLPPSNHEKEPLASSASSHPGMSENVSASLENSPAIPVNCSSAIPQPSMTSKPWRSKSLSVKHSATASMLSVKPTGPEVSRPTPEAMKPAPNNQKSMLEKLKLFNSKGGSKAGEGSTSRDTSCERLEILPSFEESEELEAASRALSTSSPASSSPKIALKGIAQRTFSRALTNKKSSPKGNEKEKEKQQREKEKEKEKGKDLTKRVSVTDRPDLKEDPKEELSGVSVTEMPKKSSKIASFIPKGGKLNSTKKEATAPSHSGIPKPGMKNMPGKSPSAATPPKEGERSRGKLSSGLPPQKPQLDSRHSSSSSSLASSEGKGPTGTTLNHSISSQTVSGSVGTTQTTGSNTVSVQLPQPQQQYNHPNTATVAPFLYRSQTDTEGNVTAESSSAGVSMEPSHYTKSGQPALEELTAEDPEARRLRTVKNIADLRQNLEETMSSLRGTQVTHSTLETTFDTNVTTEISGRSILSLTGRPTPLSWRLGQSSPRLQAGDAPSMGNGYPPRANASRFISAEAGRYVYSAPLRRQLASRGSSICHVDVSDKAGDDVDLEGISMDAPGYMSDGDVLSKNIRTDDITSGYMTDGGLGLYTRRLNRLPDGMAVVRETLQRNTSLGLGDADSWDDSSSVSSGISDTIDNLSTDDINTSSSISSYANTPASSRRNLDVQTDAEKHSQVERNSLWSGDDIKKSDGGSDSGVKMEPGSKWRRNPSDMSDESDKSVSGKKNPVISQTGSWRRGMTAEVGITMPRTKPSAPTGTLKTPGSGKTDDAKVSEKGRLSPKASQVKRSPSDAGRSSGDEAKKTLPSSSRMPTANSNSFGFKKQSGSAAGLAMITASGATITSRSATLGKIPKSSALVGRSTGRKTSMDGAPNQDDGYLSLSSRTNLQYRSLPRPSKSNSRNGAGNRCSTSSIDSNMSSKSAGLPVPKLREPSKTSLGSSLPGLVNQTDKEKGISSDNESVASCNSVKANPATQQVCGSAQATLQPGTKYSDVASPTLRRLFGGKPTKQVPIATAETMKSAVVISNPHATMTQQGNLESPSGSGVLSSGSSSPLYSKNVDLNQSPLASSPSSAHSGPSNSLTWGTSSSAVSKDGLGFQSVSSLHTSCESIDISLGSGGGLSHNSSPGPVTSTKEDSLLPFVRTSSVKTTLSESDPHLDRNTLPKKGLRYTPTSQLRTQEDAKEWLRSHSAGGLQDTAANSPFSSGSSVTSPSGTRFNFSQLASPTTVTQMSLSNPTMLRTHSLSNADGQYDPYTDSRFRNSSMSLDEKSRTMSRSGSFRDGFEEVHGSSLSLVSSTSSIYSTPEEKCQSEIRKLRRELDASQEKVSALTTQLTANAHLVAAFEQSLGNMTIRLQSLTMTAEQKDSELNELRKTIELLKKQNAAAQAAINGVINTPELNCKGNGSSQTADLRIRRQHSSDSVSSINSATSHSSVGSNIESDSKKKKRKNWVNELRSSFKQAFGKKKSPKSASSHSDIEEMTDSSLPSSPKLPHNGSTGSTPLLRNAHSNSLISECMDSEAETVMQLRNELRDKEMKLTDIRLEALSSAHQLDQLREAMNRMQSEIEKLKAENDRLKSESQGSGCSRAPSQVSISASPRQSLGLSQHSLNLPESTSLDMLLDDTGECSARKEGGRHVKIVVSFQEAMKWKEDSRPHLFLIGCIGVSGKTKWDVLDGVVRRLFKEYIVHVDPVSQLGLNSDSVLGYSIGEIKRSNTSETPELLPCGYLVGENTTILVTVKGLTENSLDSLVFESLIPKPILQRYVSLLTEHRRIILSGPSGTGKTYLANRLSEYVVLREGRELTDGVIATFNVDHKSSKELRQYLSNLADQCNSENNAVDMPLVIILDNLHHVSSLGEIFNGLLNCKYHKCPYIIGTMNQATSSTPNLQLHHNFRWVLCANHTEPVKGFLGRFLRRKLMETEISGRVRNMELVKIINWIPKVWHHLNRFLEAHSSSDVTIGPRLFLSCPIDVDGSRVWFTDLWNYSIIPYLLEAVREGLQLYGRRAPWEDPAKWVMDTYPWAASPQQHEWPPLLQLRPEDVGFDGYSLPREGSTSKQVPPSDAEGDPLMNMLMRLQEAANYSSPQSYDSDSNSNSHHDDILDSSLESTL", "length": 2406, "header": "tr|A0A9J7GY02-1|A0A9J7GY02_CRIGR Computationally mapped isoform of Neuron navigator 2 OS=Cricetulus griseus OX=10029 GN=Nav2 PE=3 SV=1 CANONICAL=A0A9J7JLC6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JLC6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLC6/entry", "sequence": { "sequence": "MPAILVASKMKSGLPKPVHSAAPILHVPPARTGPQPCYLKLGSKVEVSKTAYTSQIPLKSQGLQEPTGEGLPLRKSSSLENGFDTQIYTDWANHYLAKSGHKRLIKDLQQDVTDGVLLAQIIQVVANDKIEDINGCPKNRSQMIENIDACLNFLAAKGINTQGLSAEEIRNGNLKAILGLFFSLSRYKQQQQQQPQKQHLSSSPLPPAGSQVAGAPSQCQAGIPQQQGLAAPQAPCQPLQPASHQQAKTQAEMQSRLPGPTARVAAAGSEAKTRAGSAAANNRRSQSFNNYDKSKPVTSPPPPLPPSNHEKEPLASSASSHPGMSENVSASLENSPAIPVNCSSAIPQPSMTSKPWRSKSLSVKHSATASMLSVKPTGPEVSRPTPEAMKPAPNNQKSMLEKLKLFNSKGGSKAGEGSTSRDTSCERLEILPSFEESEELEAASRALSTSSPASSSPKIALKGIAQRTFSRALTNKKSSPKGNEKEKEKQQREKEKEKEKGKDLTKRVSVTDRPDLKEDPKEELSGVSVTEMPKKSSKIASFIPKGGKLNSTKKEATAPSHSGIPKPGMKNMPGKSPSAATPPKEGERSRGKLSSGLPPQKPQLDSRHSSSSSSLASSEGKGPTGTTLNHSISSQTVSGSVGTTQTTGSNTVSVQLPQPQQQYNHPNTATVAPFLYRSQTDTEGNVTAESSSAGVSMEPSHYTKSGQPALEELTAEDPEARRLRTVKNIADLRQNLEETMSSLRGTQVTHSTLETTFDTNVTTEISGRSILSLTGRPTPLSWRLGQSSPRLQAGDAPSMGNGYPPRANASRFISAEAGRYVYSAPLRRQLASRGSSICHVDVSDKAGDDVDLEGISMDAPGYMSDGDVLSKNIRTDDITSGYMTDGGLGLYTRRLNRLPDGMAVVRETLQRNTSLGLGDADSWDDSSSVSSGISDTIDNLSTDDINTSSSISSYANTPASSRRNLDVQTDAEKHSQVERNSLWSGDDIKKSDGGSDSGVKMEPGSKWRRNPSDMSDESDKSVSGKKNPVISQTGSWRRGMTAEVGITMPRTKPSAPTGTLKTPGSGKTDDAKVSEKGRLSPKASQVKRSPSDAGRSSGDEAKKTLPSSSRMPTANSNSFGFKKQSGSAAGLAMITASGATITSRSATLGKIPKSSALVGRSTGRKTSMDGAPNQDDGYLSLSSRTNLQYRSLPRPSKSNSRNGAGNRCSTSSIDSNMSSKSAGLPVPKLREPSKTSLGSSLPGLVNQTDKEKGISSDNESVASCNSVKANPATQQVCGSAQATLQPGTKYSDVASPTLRRLFGGKPTKQVPIATAETMKSAVVISNPHATMTQQGNLESPSGSGVLSSGSSSPLYSKNVDLNQSPLASSPSSAHSGPSNSLTWGTSSSAVSKDGLGFQSVSSLHTSCESIDISLGSGGGLSHNSSPGPVTSTKEDSLLPFVRTSSVKTTLSESPLSSPAASPKFCRSTLPRKQDSDPHLDRNTLPKKGLRYTPTSQLRTQEDAKEWLRSHSAGGLQDTAANSPFSSGSSVTSPSGTRFNFSQLASPTTVTQMSLSNPTMLRTHSLSNADGQYDPYTDSRFRNSSMSLDEKSRTMSRSGSFRDGFEEVHGSSLSLVSSTSSIYSTPEEKCQSEIRKLRRELDASQEKVSALTTQLTANAHLVAAFEQSLGNMTIRLQSLTMTAEQKDSELNELRKTIELLKKQNAAAQAAINGVINTPELNCKGNGSSQTADLRIRRQHSSDSVSSINSATSHSSVGSNIESDSKKKKRKNWVNELRSSFKQAFGKKKSPKSASSHSDIEEMTDSSLPSSPKLPHNGSTGSTPLLRNAHSNSLISECMDSEAETVMQLRNELRDKEMKLTDIRLEALSSAHQLDQLREAMNRMQSEIEKLKAENDRLKSESQGSGCSRAPSQVSISASPRQSLGLSQHSLNLPESTSLDMLLDDTGECSARKEGGRHVKIVVSFQEAMKWKEDSRPHLFLIGCIGVSGKTKWDVLDGVVRRLFKEYIVHVDPVSQLGLNSDSVLGYSIGEIKRSNTSETPELLPCGYLVGENTTILVTVKGLTENSLDSLVFESLIPKPILQRYVSLLTEHRRIILSGPSGTGKTYLANRLSEYVVLREGRELTDGVIATFNVDHKSSKELRQYLSNLADQCNSENNAVDMPLVIILDNLHHVSSLGEIFNGLLNCKYHKCPYIIGTMNQATSSTPNLQLHHNFRWVLCANHTEPVKGFLGRFLRRKLMETEISGRVRNMELVKIINWIPKVWHHLNRFLEAHSSSDVTIGPRLFLSCPIDVDGSRVWFTDLWNYSIIPYLLEAVREGLQLYGRRAPWEDPAKWVMDTYPWAASPQQHEWPPLLQLRPEDVGFDGYSLPREGSTSKQVPPSDAEGDPLMNMLMRLQEAANYSSPQSYDSDSNSNSHHDDILDSSLESTL", "length": 2428, "header": "tr|A0A9J7JLC6-1|A0A9J7JLC6_CRIGR Isoform 1 of Neuron navigator 2 OS=Cricetulus griseus OX=10029 GN=Nav2 PE=3 SV=1 CANONICAL=A0A9J7JLC6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JWK3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWK3/entry", "sequence": { "sequence": "MPAILVASKMKSGLPKPVHSAAPILHVPPARTGPQPCYLKLGSKVEVSKTAYTSQIPLKSQGLQEPTGEGLPLRKSSSLENGFDTQIYTDWANHYLAKSGHKRLIKDLQQDVTDGVLLAQIIQVVANDKIEDINGCPKNRSQMIENIDACLNFLAAKGINTQGLSAEEIRNGNLKAILGLFFSLSRYKQQQQQQPQKQHLSSSPLPPAGSQVAGAPSQCQAGIPQQQGLAAPQAPCQPLQPASHQQAKTQAEMQSRLPGPTARVAAAGSEAKTRAGSAAANNRRSQSFNNYDKSKPVTSPPPPLPPSNHEKEPLASSASSHPGMSENVSASLENSPAIPVNCSSAIPQPSMTSKPWRSKSLSVKHSATASMLSVKPTGPEVSRPTPEAMKPAPNNQKSMLEKLKLFNSKGGSKAGEGSTSRDTSCERLEILPSFEESEELEAASRALSTSSPASSSPKIALKGIAQRTFSRALTNKKSSPKGNEKEKEKQQREKEKEKEKGKDLTKRVSVTDRPDLKEDPKEELSGVSVTEMPKKSSKIASFIPKGGKLNSTKKEATAPSHSGIPKPGMKNMPGKSPSAATPPKEGERSRGKLSSGLPPQKPQLDSRHSSSSSSLASSEGKGPTGTTLNHSISSQTVSGSVGTTQTTGSNTVSVQLPQPQQQYNHPNTATVAPFLYRSQTDTEGNVTAESSSAGVSMEPSHYTKSGQPALEELTAEDPEARRLRTVKNIADLRQNLEETMSSLRGTQVTHSTLETTFDTNVTTEISGRSILSLTGRPTPLSWRLGQSSPRLQAGDAPSMGNGYPPRANASRFISAEAGRYVYSAPLRRQLASRGSSICHVDVSDKAGDDVDLEGISMDAPGYMSDGDVLSKNIRTDDITSGYMTDGGLGLYTRRLNRLPDGMAVVRETLQRNTSLGLGDADSWDDSSSVSSGISDTIDNLSTDDINTSSSISSYANTPASSRRNLDVQTDAEKHSQVERNSLWSGDDIKKSDGGSDSGVKMEPGSKWRRNPSDMSDESDKSVSGKKNPVISQTGSWRRGMTAEVGITMPRTKPSAPTGTLKTPGSGKTDDAKVSEKGRLSPKASQVKRSPSDAGRSSGDEAKKTLPSSSRMPTANSNSFGFKKQSGSAAGLAMITASGATITSRSATLGKIPKSSALVGRSTGRKTSMDGAPNQDDGYLSLSSRTNLQYRSLPRPSKSNSRNGAGNRCSTSSIDSNMSSKSAGLPVPKLREPSKTSLGSSLPGLVNQTDKEKGISSDNESVASCNSVKANPATQQVCGSAQATLQPGTKYSDVASPTLRRYTPTSQLRTQEDAKEWLRSHSAGGLQDTAANSPFSSGSSVTSPSGTRFNFSQLASPTTVTQMSLSNPTMLRTHSLSNADGQYDPYTDSRFRNSSMSLDEKSRTMSRSGSFRDGFEEVHGSSLSLVSSTSSIYSTPEEKCQSEIRKLRRELDASQEKVSALTTQLTANAHLVAAFEQSLGNMTIRLQSLTMTAEQKDSELNELRKTIELLKKQNAAAQAAINGVINTPELNCKGNGSSQTADLRIRRQHSSDSVSSINSATSHSSVGSNIESDSKKKKRKNWVNELRSSFKQAFGKKKSPKSASSHSDIEEMTDSSLPSSPKLPHNGSTGSTPLLRNAHSNSLISECMDSEAETVMQLRNELRDKEMKLTDIRLEALSSAHQLDQLREAMNRMQSEIEKLKAENDRLKSESQGSGCSRAPSQVSISASPRQSLGLSQHSLNLPESTSLDMLLDDTGECSARKEGGRHVKIVVSFQEAMKWKEDSRPHLFLIGCIGVSGKTKWDVLDGVVRRLFKEYIVHVDPVSQLGLNSDSVLGYSIGEIKRSNTSETPELLPCGYLVGENTTILVTVKGLTENSLDSLVFESLIPKPILQRYVSLLTEHRRIILSGPSGTGKTYLANRLSEYVVLREGRELTDGVIATFNVDHKSSKELRQYLSNLADQCNSENNAVDMPLVIILDNLHHVSSLGEIFNGLLNCKYHKCPYIIGTMNQATSSTPNLQLHHNFRWVLCANHTEPVKGFLGRFLRRKLMETEISGRVRNMELVKIINWIPKVWHHLNRFLEAHSSSDVTIGPRLFLSCPIDVDGSRVWFTDLWNYSIIPYLLEAVREGLQLYGRRAPWEDPAKWVMDTYPWAASPQQHEWPPLLQLRPEDVGFDGYSLPREGSTSKQVPPSDAEGDPLMNMLMRLQEAANYSSPQSYDSDSNSNSHHDDILDSSLESTL", "length": 2238, "header": "tr|A0A9J7JWK3-1|A0A9J7JWK3_CRIGR Computationally mapped isoform of Neuron navigator 2 OS=Cricetulus griseus OX=10029 GN=Nav2 PE=3 SV=1 CANONICAL=A0A9J7JLC6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K3P5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3P5/entry", "sequence": { "sequence": "MPAILVASKMKSGLPKPVHSAAPILHVPPARTGPQPCYLKLGSKVEVSKTAYTSQIPLKSQGLQEPTGEGLPLRKSSSLENGFDTQIYTDWANHYLAKSGHKRLIKDLQQDVTDGVLLAQIIQVVANDKIEDINGCPKNRSQMIENIDACLNFLAAKGINTQGLSAEEIRNGNLKAILGLFFSLSRYKQQQQQQPQKQHLSSSPLPPAGSQVAGAPSQCQAGIPQQQGLAAPQAPCQPLQPASHQQAKTQAEMQSRLPGPTARVAAAGSEAKTRAGSAAANNRRSQSFNNYDKSKPVTSPPPPLPPSNHEKEPLASSASSHPGMSENVSASLENSPAIPVNCSSAIPQPSMTSKPWRSKSLSVKHSATASMLSVKPTGPEVSRPTPEAMKPAPNNQKSMLEKLKLFNSKGGSKAGEGSTSRDTSCERLEILPSFEESEELEAASRALSTSSPASSSPKIALKGIAQRTFSRALTNKKSSPKGNEKEKEKQQREKEKEKEKGKDLTKRVSVTDRPDLKEDPKEELSGVSVTEMPKKSSKIASFIPKGGKLNSTKKEATAPSHSGIPKPGMKNMPGKSPSAATPPKEGERSRGKLSSGLPPQKPQLDSRHSSSSSSLASSEGKGPTGTTLNHSISSQTVSGSVGTTQTTGSNTVSVQLPQPQQQYNHPNTATVAPFLYRSQTDTEGNVTAESSSAGVSMEPSHYTKSGQPALEELTAEDPEARRLRTVKNIADLRQNLEETMSSLRGTQVTHSTLETTFDTNVTTEISGRSILSLTGRPTPLSWRLGQSSPRLQAGDAPSMGNGYPPRANASRFISAEAGRYVYSAPLRRQLASRGSSICHVDVSDKAGDDVDLEGISMDAPGYMSDGDVLSKNIRTDDITSGYMTDGGLGLYTRRLNRLPDGMAVVRETLQRNTSLGLGDADSWDDSSSVSSGISDTIDNLSTDDINTSSSISSYANTPASSRRNLDVQTDAEKHSQVERNSLWSGDDIKKSDGGSDSGVKMEPGSKWRRNPSDMSDESDKSVSGKKNPVISQTGSWRRGMTAEVGITMPRTKPSAPTGTLKTPGSGKTDDAKVSEKGRLSPKASQVKRSPSDAGRSSGDEAKKTLPSSSRMPTANSNSFGFKKQSGSAAGLAMITASGATITSRSATLGKIPKSSALVGRSTGRKTSMDGAPNQDDGYLSLSSRTNLQYRSLPRPSKSNSRNGAGNRCSTSSIDSNMSSKSAGLPVPKLREPSKTSLGSSLPGLVNQTDKEKGISSDNESVASCNSVKANPATQQVCGSAQATLQPGTKYSDVASPTLRRLFGGKPTKQVPIATAETMKSAVVISNPHATMTQQGNLESPSGSGVLSSGSSSPLYSKNVDLNQSPLASSPSSAHSGPSNSLTWGTSSSAVSKDGLGFQSVSSLHTSCESIDISLGSGGGLSHNSSPGPVTSTKEDSLLPFVRTSSVKTTLSERYTPTSQLRTQEDAKEWLRSHSAGGLQDTAANSPFSSGSSVTSPSGTRFNFSQLASPTTVTQMSLSNPTMLRTHSLSNADGQYDPYTDSRFRNSSMSLDEKSRTMSRSGSFRDGFEEVHGSSLSLVSSTSSIYSTPEEKCQSEIRKLRRELDASQEKVSALTTQLTANAHLVAAFEQSLGNMTIRLQSLTMTAEQKDSELNELRKTIELLKKQNAAAQAAINGVINTPELNCKGNGSSQTADLRIRRQHSSDSVSSINSATSHSSVGSNIESDSKKKKRKNWVNELRSSFKQAFGKKKSPKSASSHSDIEEMTDSSLPSSPKLPHNGSTGSTPLLRNAHSNSLISECMDSEAETVMQLRNELRDKEMKLTDIRLEALSSAHQLDQLREAMNRMQSEIEKLKAENDRLKSESQGSGCSRAPSQVSISASPRQSLGLSQHSLNLPESTSLDMLLDDTGECSARKEGGRHVKIVVSFQEAMKWKEDSRPHLFLIGCIGVSGKTKWDVLDGVVRRLFKEYIVHVDPVSQLGLNSDSVLGYSIGEIKRSNTSETPELLPCGYLVGENTTILVTVKGLTENSLDSLVFESLIPKPILQRYVSLLTEHRRIILSGPSGTGKTYLANRLSEYVVLREGRELTDGVIATFNVDHKSSKELRQYLSNLADQCNSENNAVDMPLVIILDNLHHVSSLGEIFNGLLNCKYHKCPYIIGTMNQATSSTPNLQLHHNFRWVLCANHTEPVKGFLGRFLRRKLMETEISGRVRNMELVKIINWIPKVWHHLNRFLEAHSSSDVTIGPRLFLSCPIDVDGSRVWFTDLWNYSIIPYLLEAVREGLQLYGRRAPWEDPAKWVMDTYPWAASPQQHEWPPLLQLRPEDVGFDGYSLPREGSTSKQVPPSDAEGDPLMNMLMRLQEAANYSSPQSYDSDSNSNSHHDDILDSSLESTL", "length": 2391, "header": "tr|A0A9J7K3P5-1|A0A9J7K3P5_CRIGR Computationally mapped isoform of Neuron navigator 2 OS=Cricetulus griseus OX=10029 GN=Nav2 PE=3 SV=1 CANONICAL=A0A9J7JLC6-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 581, "start_aa": "Thr", "end_pos": 581, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr581", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 624, "start_aa": "Thr", "end_pos": 624, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr624", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "enzyme", "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MA12", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MA12" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MA12", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MA12" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100760394", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760394", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "3'-5' DNA helicase activity", "id": "GO:0043138", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043138", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JLC6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLC6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JLC6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLC6" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JLC6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLC6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "cerebellar cortex development", "id": "GO:0021695", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0021695", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JLC6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLC6" } ], "pmid": "" }, { "name": "neurogenesis", "id": "GO:0022008", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022008", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JLC6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLC6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1216, "end_pos": 1218, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1246, "end_pos": 1248, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1258, "end_pos": 1260, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1362, "end_pos": 1364, "annotation": "n_glycosylation_sequon" }, { "start_pos": 139, "end_pos": 141, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1423, "end_pos": 1425, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1539, "end_pos": 1541, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1582, "end_pos": 1584, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1670, "end_pos": 1672, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1724, "end_pos": 1726, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1815, "end_pos": 1817, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2034, "end_pos": 2036, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2051, "end_pos": 2053, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2220, "end_pos": 2222, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2303, "end_pos": 2305, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2399, "end_pos": 2401, "annotation": "n_glycosylation_sequon" }, { "start_pos": 327, "end_pos": 329, "annotation": "n_glycosylation_sequon" }, { "start_pos": 341, "end_pos": 343, "annotation": "n_glycosylation_sequon" }, { "start_pos": 550, "end_pos": 552, "annotation": "n_glycosylation_sequon" }, { "start_pos": 629, "end_pos": 631, "annotation": "n_glycosylation_sequon" }, { "start_pos": 685, "end_pos": 687, "annotation": "n_glycosylation_sequon" }, { "start_pos": 760, "end_pos": 762, "annotation": "n_glycosylation_sequon" }, { "start_pos": 808, "end_pos": 810, "annotation": "n_glycosylation_sequon" }, { "start_pos": 912, "end_pos": 914, "annotation": "n_glycosylation_sequon" }, { "start_pos": 939, "end_pos": 941, "annotation": "n_glycosylation_sequon" }, { "start_pos": 946, "end_pos": 948, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "13065", "name": "", "equation": "ATP + H2O = ADP + phosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [ "G3H6T7-1", "G3H7V9-1", "G3HCT4-1", "G3HIC5-1", "G3HIL5-1", "A0A061IR73-1", "G3GXG9-1", "G3I8R9-1", "G3HH18-1", "A0A9J7FU33-1", "G3I2I1-1", "A0A9J7FTT2-1", "G3IEZ7-1", "G3HKQ8-1", "G3HMB1-1", "G3HCV0-1", "G3HX41-1", "G3I6K0-1", "G3HTL1-1", "G3HU77-1", "G3HAH5-1", "G3HJ88-1", "G3GSH5-1", "G3GY12-1", "G3I5T3-1", "G3I6L7-1", "G3H484-1", "G3IJD1-1", "G3I008-1", "A0A8C2M596-1", "G3IG24-1", "A0A9J7F876-1", "A0A9J7FI42-1", "A0A9J7G1N4-1", "A0A061IJA4-1", "A0A9J7FPD0-1", "A0A9J7G7V8-1", "A0A9J7JQY5-1", "A0A8C2MCA5-1", "A0A9J7H2D3-1", "A0A9J7G2T1-1", "G3HBU1-1", "G3HUZ6-1", "G3HWS4-1", "A0A9J7HCU3-1", "A0A3L7HMZ7-1", "A0A9J7K3T5-1", "A0A8C2MMI4-1", "A0A9J7GRQ0-1", "A0A8C2N055-1", "A0A8C2QHV1-1", "A0A8C2QM19-1", "A0A8C2M4F5-1", "A0A9J7FJ23-1", "A0A9J7FUH6-1", "A0A9J7G659-1", "A0A9J7K2R5-1", "A0A8C2MB35-1", "G3I478-1", "A0A9J7H1K5-1", "A0A8C2QH91-1", "A0A9J7JQ85-1", "A0A9J7K381-1", "A0A061HU45-1", "A0A061I456-1", "A0A061ICN7-1", "A0A061IKS3-1", "A0A3L7H9D4-1", "A0A9J7H2L4-1", "A0A8C2LZL3-1", "A0A8C2M796-1", "A0A8C2MCS3-1", "A0A8C2MPK3-1", "A0A8C2MQ86-1", "A0A3L7ILF9-1", "A0A3L7INC4-1", "A0A8C2LCW6-1", "A0A8C2LRD7-1", "A0A8C2LSK1-1", "A0A9J7JSD0-1", "P18279-1", "P48975-1", "A0A8C2MVH8-1", "A0A8C2MWE0-1", "A0A8C2MYM8-1", "A0A8C2N236-1", "A0A9J7FYM8-1", "A0A8C2QLX9-1", "A0A8C2QNE7-1", "A0A9J7F9W3-1", "A0A9J7JR19-1", "A0A9J7FPK3-1", "A0A9J7JMF4-1", "A0A9J7FV95-1", "A0A9J7FXI2-1", "A0A9J7G412-1", "A0A9J7G5W9-1", "A0A9J7GCV1-1", "A0A9J7H3Y2-1", "A0A9J7GF88-1", "A0A9J7GHR4-1", "A0A9J7GID0-1", "A0A9J7JVX0-1", "A0A9J7KF39-1", "A0A9J7H4G1-1", "A0A9J7H9J6-1", "A0A9J7JEW1-1", "A0A9J7JIL5-1", "A0A9J7FCH5-1", "A0A8C2MFM1-1", "A0A8C2MWH4-1", "A0A8C2LG83-1", "A0A9J7GDX9-1", "A0A9J7H2C5-1", "A0A9J7GN75-1", "A0A9J7JT79-1", "A0A9J7K1D9-1", "A0A061IIX2-1", "A0A8C2M474-1", "A0A8C2N386-1", "A0A9J7GR00-1", "O35501-1", "P18708-1", "P19378-1", "P46633-1", "Q60452-1", "A0A8C2LBG1-1", "A0A8C2LR22-1", "A0A8C2M4G0-1", "A0A8C2M6G7-1", "G3HCS2-1", "P70099-1", "A0A9J7FI19-1", "A0A9J7G6M1-1", "A0A9J7FJ37-1", "A0A9J7G7R5-1", "A0A8C2MAV3-1", "A0A8C2N184-1", "A0A9J7F1E5-1", "A0A8C2MBY6-1", "A0A9J7JLC6-1" ], "evidence": [ { "id": "13065", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/13065" } ] } ], "reaction_participants": [], "reaction_enzymes": [ { "uniprot_ac": "A0A061HU45", "gene_name": "Ercc6l", "activity": [ { "ec_number": "3.6.4.12", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A061HU45", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061HU45" } ] }, { "ec_number": "3.6.4.12", "activity": "", "evidence": [ { "id": "A0A061HU45", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061HU45" } ] } ] }, { 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phosphate + H(+).", "evidence": [ { "id": "A0A061IIX2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061IIX2" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A061IIX2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061IIX2" } ] } ] }, { "uniprot_ac": "A0A061IJA4", "gene_name": "Dhx29", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A061IJA4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061IJA4" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A061IJA4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061IJA4" } ] } ] }, { "uniprot_ac": "A0A061IKS3", "gene_name": "Helq", "activity": [ { "ec_number": "5.6.2.4", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A061IKS3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061IKS3" } ] }, { "ec_number": "5.6.2.4", "activity": "", "evidence": [ { "id": "A0A061IKS3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061IKS3" } ] } ] }, { "uniprot_ac": "A0A061IR73", "gene_name": "PEX6", "activity": [ { "ec_number": "3.6.4.-", "activity": "", "evidence": [ { "id": "A0A061IR73", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061IR73" } ] } ] }, { "uniprot_ac": "A0A3L7H9D4", "gene_name": "Dhx58", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A3L7H9D4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7H9D4" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A3L7H9D4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7H9D4" } ] } ] }, { "uniprot_ac": "A0A3L7HMZ7", "gene_name": "Ddx51", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A3L7HMZ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HMZ7" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A3L7HMZ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HMZ7" } ] } ] }, { "uniprot_ac": "A0A3L7ILF9", "gene_name": "Skiv2l", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A3L7ILF9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7ILF9" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A3L7ILF9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7ILF9" } ] } ] }, { "uniprot_ac": "A0A3L7INC4", "gene_name": "Dhx15", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A3L7INC4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7INC4" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A3L7INC4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7INC4" } ] } ] }, { "uniprot_ac": "A0A8C2LBG1", "gene_name": "Dna2", "activity": [ { "ec_number": "3.1.-.-", "activity": "", "evidence": [ { "id": "A0A8C2LBG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LBG1" } ] }, { "ec_number": "3.6.4.12", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2LBG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LBG1" } ] }, { "ec_number": "3.6.4.12", "activity": "", "evidence": [ { "id": "A0A8C2LBG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LBG1" } ] } ] }, { "uniprot_ac": "A0A8C2LCW6", "gene_name": "Ascc3", "activity": [ { "ec_number": "5.6.2.4", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2LCW6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LCW6" } ] }, { "ec_number": "5.6.2.4", "activity": "", "evidence": [ { "id": "A0A8C2LCW6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LCW6" } ] } ] }, { "uniprot_ac": "A0A8C2LG83", "gene_name": "Ddx43", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2LG83", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LG83" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A8C2LG83", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LG83" } ] } ] }, { "uniprot_ac": "A0A8C2LR22", "gene_name": "Dhx16", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2LR22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LR22" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A8C2LR22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LR22" } ] } ] }, { "uniprot_ac": "A0A8C2LRD7", "gene_name": "Mcm3", "activity": [ { "ec_number": "3.6.4.12", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2LRD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LRD7" } ] }, { "ec_number": "3.6.4.12", "activity": "", "evidence": [ { "id": "A0A8C2LRD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LRD7" } ] } ] }, { "uniprot_ac": "A0A8C2LSK1", "gene_name": "Eif4a1", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2LSK1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LSK1" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A8C2LSK1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LSK1" } ] } ] }, { "uniprot_ac": "A0A8C2LZL3", "gene_name": "Mov10", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2LZL3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LZL3" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A8C2LZL3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LZL3" } ] } ] }, { "uniprot_ac": "A0A8C2M474", "gene_name": "Dhx36", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2M474", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M474" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A8C2M474", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M474" } ] } ] }, { "uniprot_ac": "A0A8C2M4F5", "gene_name": "Chd8", "activity": [ { "ec_number": "3.6.4.-", "activity": "", "evidence": [ { "id": "A0A8C2M4F5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4F5" } ] } ] }, { "uniprot_ac": "A0A8C2M4G0", "gene_name": "Helz", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2M4G0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4G0" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A8C2M4G0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4G0" } ] } ] }, { "uniprot_ac": "A0A8C2M596", "gene_name": "Dhx30", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2M596", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M596" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A8C2M596", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M596" } ] } ] }, { "uniprot_ac": "A0A8C2M6G7", "gene_name": "Ddx1", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2M6G7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M6G7" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A8C2M6G7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M6G7" } ] } ] }, { "uniprot_ac": "A0A8C2M796", "gene_name": "Ddx27", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2M796", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M796" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A8C2M796", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M796" } ] } ] }, { "uniprot_ac": "A0A8C2MAV3", "gene_name": "Entpd2", "activity": [ { "ec_number": "3.6.1.5", "activity": "a 2'-deoxyribonucleoside 5'-triphosphate + 2 H2O = a 2'-deoxyribonucleoside 5'-phosphate + 2 phosphate + 2 H(+).", "evidence": [ { "id": "A0A8C2MAV3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MAV3" } ] }, { "ec_number": "3.6.1.5", "activity": "", "evidence": [ { "id": "A0A8C2MAV3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MAV3" } ] } ] }, { "uniprot_ac": "A0A8C2MB35", "gene_name": "Ddx21", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2MB35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MB35" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A8C2MB35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MB35" } ] } ] }, { "uniprot_ac": "A0A8C2MBY6", "gene_name": "Entpd3", "activity": [ { "ec_number": "3.6.1.5", "activity": "a 2'-deoxyribonucleoside 5'-triphosphate + 2 H2O = a 2'-deoxyribonucleoside 5'-phosphate + 2 phosphate + 2 H(+).", "evidence": [ { "id": "A0A8C2MBY6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBY6" } ] }, { "ec_number": "3.6.1.5", "activity": "", "evidence": [ { "id": "A0A8C2MBY6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBY6" } ] } ] }, { "uniprot_ac": "A0A8C2MCA5", "gene_name": "Ddx41", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2MCA5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCA5" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A8C2MCA5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCA5" } ] } ] }, { "uniprot_ac": "A0A8C2MCS3", "gene_name": "Ddx47", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2MCS3", "database": "UniProtKB", "url": 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"evidence": [ { "id": "A0A8C2MMI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMI4" } ] } ] }, { "uniprot_ac": "A0A8C2MPK3", "gene_name": "Mcm6", "activity": [ { "ec_number": "3.6.4.12", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2MPK3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPK3" } ] }, { "ec_number": "3.6.4.12", "activity": "", "evidence": [ { "id": "A0A8C2MPK3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MPK3" } ] } ] }, { "uniprot_ac": "A0A8C2MQ86", "gene_name": "Ddx50", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2MQ86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQ86" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A8C2MQ86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQ86" } ] } ] }, { "uniprot_ac": "A0A8C2MVH8", "gene_name": "Mcm7", "activity": [ { "ec_number": "3.6.4.12", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2MVH8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MVH8" } ] }, { "ec_number": "3.6.4.12", "activity": "", "evidence": [ { "id": "A0A8C2MVH8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MVH8" } ] } ] }, { "uniprot_ac": "A0A8C2MWE0", "gene_name": "Snrnp200", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2MWE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MWE0" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A8C2MWE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MWE0" } ] } ] }, { "uniprot_ac": "A0A8C2MWH4", "gene_name": "Ddx25", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2MWH4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MWH4" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A8C2MWH4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MWH4" } ] } ] }, { "uniprot_ac": "A0A8C2MYM8", "gene_name": "Tdrd9", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2MYM8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYM8" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A8C2MYM8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MYM8" } ] } ] }, { "uniprot_ac": "A0A8C2N055", "gene_name": "Ythdc2", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2N055", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N055" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A8C2N055", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N055" } ] } ] }, { "uniprot_ac": "A0A8C2N184", "gene_name": "Entpd8", "activity": [ { "ec_number": "3.6.1.5", "activity": "a 2'-deoxyribonucleoside 5'-triphosphate + 2 H2O = a 2'-deoxyribonucleoside 5'-phosphate + 2 phosphate + 2 H(+).", "evidence": [ { "id": "A0A8C2N184", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N184" } ] }, { "ec_number": "3.6.1.5", "activity": "", "evidence": [ { "id": "A0A8C2N184", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N184" } ] } ] }, { "uniprot_ac": "A0A8C2N236", "gene_name": "Atp13a4", "activity": [ { "ec_number": "7.2.2.-", "activity": "", "evidence": [ { "id": "A0A8C2N236", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N236" } ] } ] }, { "uniprot_ac": "A0A8C2N386", "gene_name": "Vcp", "activity": [ { "ec_number": "3.6.4.6", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2N386", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N386" } ] }, { "ec_number": "3.6.4.6", "activity": "", "evidence": [ { "id": "A0A8C2N386", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N386" } ] } ] }, { "uniprot_ac": "A0A8C2QH91", "gene_name": "Ino80", "activity": [ { "ec_number": "3.6.4.-", "activity": "", "evidence": [ { "id": "A0A8C2QH91", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QH91" } ] } ] }, { "uniprot_ac": "A0A8C2QHV1", "gene_name": "Ddx20", "activity": [ { "ec_number": "3.6.1.15", "activity": "a ribonucleoside 5'-triphosphate + H2O = a ribonucleoside 5'-diphosphate + phosphate + H(+).", "evidence": [ { "id": "A0A8C2QHV1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QHV1" } ] }, { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2QHV1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QHV1" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A8C2QHV1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QHV1" } ] }, { "ec_number": "3.6.1.15", "activity": "", "evidence": [ { "id": "A0A8C2QHV1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QHV1" } ] } ] }, { "uniprot_ac": "A0A8C2QLX9", "gene_name": "Ddx52", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2QLX9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QLX9" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A8C2QLX9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QLX9" } ] } ] }, { "uniprot_ac": "A0A8C2QM19", "gene_name": "Clpx", "activity": [ { "ec_number": "3.6.4.10", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2QM19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QM19" } ] }, { "ec_number": "3.6.4.10", "activity": "", "evidence": [ { "id": "A0A8C2QM19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QM19" } ] } ] }, { "uniprot_ac": "A0A8C2QNE7", "gene_name": "Eif4a3", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A8C2QNE7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QNE7" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A8C2QNE7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QNE7" } ] } ] }, { "uniprot_ac": "A0A9J7F1E5", "gene_name": "Hltf", "activity": [ { "ec_number": "2.3.2.27", "activity": "S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.", "evidence": [ { "id": "A0A9J7F1E5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1E5" } ] }, { "ec_number": "2.3.2.27", "activity": "", "evidence": [ { "id": "A0A9J7F1E5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1E5" } ] } ] }, { "uniprot_ac": "A0A9J7F876", "gene_name": "Ddx11", "activity": [ { "ec_number": "5.6.2.3", "activity": "Couples ATP hydrolysis with the unwinding of duplex DNA at the replication fork by translocating in the 5'-3' direction.", "evidence": [ { "id": "A0A9J7F876", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F876" } ] }, { "ec_number": "5.6.2.3", "activity": "", "evidence": [ { "id": "A0A9J7F876", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F876" } ] } ] }, { "uniprot_ac": "A0A9J7F9W3", "gene_name": "Zgrf1", "activity": [ { "ec_number": "5.6.2.3", "activity": "Couples ATP hydrolysis with the unwinding of duplex DNA at the replication fork by translocating in the 5'-3' direction.", "evidence": [ { "id": "A0A9J7F9W3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9W3" } ] }, { "ec_number": "5.6.2.3", "activity": "", "evidence": [ { "id": "A0A9J7F9W3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9W3" } ] } ] }, { "uniprot_ac": "A0A9J7FCH5", "gene_name": "Mov10l1", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A9J7FCH5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCH5" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A9J7FCH5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCH5" } ] } ] }, { "uniprot_ac": "A0A9J7FI19", "gene_name": "Xrcc6", "activity": [ { "ec_number": "4.2.99.18", "activity": "2'-deoxyribonucleotide-(2'-deoxyribose 5'-phosphate)-2'-deoxyribonucleotide-DNA = a 3'-end 2'-deoxyribonucleotide-(2,3-dehydro-2,3-deoxyribose 5'-phosphate)-DNA + a 5'-end 5'-phospho-2'-deoxyribonucleoside-DNA + H(+).", "evidence": [ { "id": "A0A9J7FI19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FI19" } ] }, { "ec_number": "5.6.2.4", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A9J7FI19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FI19" } ] }, { "ec_number": "4.2.99.18", "activity": "", "evidence": [ { "id": "A0A9J7FI19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FI19" } ] }, { "ec_number": "5.6.2.4", "activity": "", "evidence": [ { "id": "A0A9J7FI19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FI19" } ] } ] }, { "uniprot_ac": "A0A9J7FI42", "gene_name": "Fbh1", "activity": [ { "ec_number": "5.6.2.4", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A9J7FI42", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FI42" } ] }, { "ec_number": "5.6.2.4", "activity": "", "evidence": [ { "id": "A0A9J7FI42", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FI42" } ] } ] }, { "uniprot_ac": "A0A9J7FJ23", "gene_name": "LOC100757928", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7FJ23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ23" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7FJ23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ23" } ] } ] }, { "uniprot_ac": "A0A9J7FJ37", "gene_name": "Mcm9", "activity": [ { "ec_number": "5.6.2.4", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A9J7FJ37", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ37" } ] }, { "ec_number": "5.6.2.4", "activity": "", "evidence": [ { "id": "A0A9J7FJ37", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ37" } ] } ] }, { "uniprot_ac": "A0A9J7FPD0", "gene_name": "Dhx32", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A9J7FPD0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPD0" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A9J7FPD0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPD0" } ] } ] }, { "uniprot_ac": "A0A9J7FPK3", "gene_name": "Twnk", "activity": [ { "ec_number": "5.6.2.3", "activity": "Couples ATP hydrolysis with the unwinding of duplex DNA at the replication fork by translocating in the 5'-3' direction.", "evidence": [ { "id": "A0A9J7FPK3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPK3" } ] }, { "ec_number": "5.6.2.3", "activity": "", "evidence": [ { "id": "A0A9J7FPK3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPK3" } ] } ] }, { "uniprot_ac": "A0A9J7FTT2", "gene_name": "Mcm5", "activity": [ { "ec_number": "3.6.4.12", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A9J7FTT2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTT2" } ] }, { "ec_number": "3.6.4.12", "activity": "", "evidence": [ { "id": "A0A9J7FTT2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTT2" } ] } ] }, { "uniprot_ac": "A0A9J7FU33", "gene_name": "Eif4a2", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A9J7FU33", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU33" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A9J7FU33", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU33" } ] } ] }, { "uniprot_ac": "A0A9J7FUH6", "gene_name": "Polq", "activity": [ { "ec_number": "2.7.7.7", "activity": "DNA(n) + a 2'-deoxyribonucleoside 5'-triphosphate = DNA(n+1) + diphosphate.", "evidence": [ { "id": "A0A9J7FUH6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUH6" } ] }, { "ec_number": "2.7.7.7", "activity": "", "evidence": [ { "id": "A0A9J7FUH6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUH6" } ] }, { "ec_number": "2.7.7.49", "activity": "DNA(n) + a 2'-deoxyribonucleoside 5'-triphosphate = DNA(n+1) + diphosphate.", "evidence": [ { "id": "A0A9J7FUH6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUH6" } ] }, { "ec_number": "3.6.4.12", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A9J7FUH6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUH6" } ] }, { "ec_number": "2.7.7.49", "activity": "", "evidence": [ { "id": "A0A9J7FUH6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUH6" } ] }, { "ec_number": "3.6.4.12", "activity": "", "evidence": [ { "id": "A0A9J7FUH6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUH6" } ] } ] }, { "uniprot_ac": "A0A9J7FV95", "gene_name": "LOC100751095", "activity": [ { "ec_number": "7.2.2.-", "activity": "", "evidence": [ { "id": "A0A9J7FV95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV95" } ] } ] }, { "uniprot_ac": "A0A9J7FXI2", "gene_name": "Ddx10", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A9J7FXI2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXI2" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A9J7FXI2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXI2" } ] } ] }, { "uniprot_ac": "A0A9J7FYM8", "gene_name": "Ddx54", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A9J7FYM8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYM8" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A9J7FYM8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYM8" } ] } ] }, { "uniprot_ac": "A0A9J7G1N4", "gene_name": "Fancm", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A9J7G1N4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1N4" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A9J7G1N4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1N4" } ] } ] }, { "uniprot_ac": "A0A9J7G2T1", "gene_name": "Dhx9", "activity": [ { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A9J7G2T1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2T1" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A9J7G2T1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2T1" } ] } ] }, { "uniprot_ac": "A0A9J7G412", "gene_name": "Helz2", "activity": [ { "ec_number": "3.1.13.1", "activity": "Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates.", "evidence": [ { "id": "A0A9J7G412", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G412" } ] }, { "ec_number": "3.6.4.13", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A9J7G412", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G412" } ] }, { "ec_number": "3.1.13.1", "activity": "", "evidence": [ { "id": "A0A9J7G412", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G412" } ] }, { "ec_number": "3.6.4.13", "activity": "", "evidence": [ { "id": "A0A9J7G412", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G412" } ] } ] }, { "uniprot_ac": "A0A9J7G5W9", "gene_name": "Spata5l1", "activity": [ { "ec_number": "3.6.4.10", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A9J7G5W9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5W9" } ] }, { "ec_number": "3.6.4.10", "activity": "", "evidence": [ { "id": "A0A9J7G5W9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5W9" } ] } ] }, { "uniprot_ac": "A0A9J7G659", "gene_name": "Rtel1", "activity": [ { "ec_number": "5.6.2.-", "activity": "", "evidence": [ { "id": "A0A9J7G659", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G659" } ] } ] }, { "uniprot_ac": "A0A9J7G6M1", "gene_name": "Mcm8", "activity": [ { "ec_number": "2.7.8.41", "activity": "a CDP-1,2-diacyl-sn-glycerol + a 1,2-diacyl-sn-glycero-3-phospho-(1'-sn-glycerol) = a cardiolipin + CMP + H(+).", "evidence": [ { "id": "A0A9J7G6M1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6M1" } ] }, { "ec_number": "5.6.2.4", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A9J7G6M1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6M1" } ] }, { "ec_number": "2.7.8.41", "activity": "", "evidence": [ { "id": "A0A9J7G6M1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6M1" } ] }, { "ec_number": "5.6.2.4", "activity": "", "evidence": [ { "id": "A0A9J7G6M1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6M1" } ] } ] }, { "uniprot_ac": "A0A9J7G7R5", "gene_name": "Setx", "activity": [ { "ec_number": "3.6.4.12", "activity": "ATP + H2O = ADP + phosphate + H(+).", "evidence": [ { "id": "A0A9J7G7R5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7R5" } ] }, { "ec_number": "3.6.4.13", "activity": "ATP + H2O 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} ] }, { "ec_number": "3.6.4.10", "activity": "", "evidence": [ { "id": "P46633", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P46633" } ] } ] }, { "uniprot_ac": "P48975", "gene_name": "ACTB", "activity": [ { "ec_number": "3.6.4.-", "activity": "", "evidence": [ { "id": "P48975", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P48975" } ] } ] }, { "uniprot_ac": "P70099", "gene_name": "RAD51", "activity": [ { "ec_number": "3.6.4.-", "activity": "", "evidence": [ { "id": "P70099", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P70099" } ] } ] }, { "uniprot_ac": "Q60452", "gene_name": "ERCC2", "activity": [ { "ec_number": "5.6.2.3", "activity": "Couples ATP hydrolysis with the unwinding of duplex DNA at the replication fork by translocating in the 5'-3' direction.", "evidence": [ { "id": "Q60452", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q60452" } ] }, { "ec_number": "5.6.2.3", "activity": "", 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}, "refseq": { "ac": "XP_027239906", "name": "ubiquitin-related modifier 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027239906" }, "gene_names": [ { "name": "Urm1", "type": "recommended", "evidence": [ { "id": "A0A9J7JWA6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWA6" } ] }, { "name": "URM1", "type": "synonym", "evidence": [ { "id": "A0A9J7JWA6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWA6" } ] }, { "name": "Urm1", "type": "synonym", "evidence": [ { "id": "XP_027239906", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027239906" } ] } ], "protein_names": [ { "name": "Ubiquitin-related modifier 1", "type": "recommended", "evidence": [ { "id": "A0A9J7JWA6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWA6/entry#names_and_taxonomy" } ] }, { "name": "ubiquitin-related modifier 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027239906", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027239906" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003615231.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027239906", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027239906" } ] }, { "annotation": "Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by being thiocarboxylated (-COSH) at its C-terminus by MOCS3. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. Also acts as a ubiquitin-like protein (UBL) that is covalently conjugated via an isopeptide bond to lysine residues of target proteins such as MOCS3, ATPBD3, CTU2, USP15 and CAS. The thiocarboxylated form serves as substrate for conjugation and oxidative stress specifically induces the formation of UBL-protein conjugates.", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QP34", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP34#function" }, { "database": "HAMAP", "id": "MF_03048", "url": "https://hamap.expasy.org/signature/MF_03048" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JWA6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWA6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Urm1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWA6", "locus": {} } ], "crossref": [ { "id": "A0A9J7JWA6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JWA6", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd01764", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01764", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100765578", "url": "https://www.ncbi.nlm.nih.gov/gene/100765578", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR012675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015221", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015221", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016155", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016155", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100765578", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765578", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DYELQPN", "url": "https://omabrowser.org/oma/group/DYELQPN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QP34", "url": "https://www.orthodb.org/?gene=A0A8C2QP34", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JWA6", "url": "https://www.orthodb.org/?gene=A0A9J7JWA6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14986", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14986", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09138", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09138", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027239906", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027239906", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QP34", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP34", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QP34-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP34-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JWA6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWA6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JWA6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWA6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAPLCVEVQFGGGAELLFDGVKKHQVTLPGQEGPWDIRNLLVWIKKNLLKERPELFIQGESVESWTTSCRTRTASSSSPHCTAAEGSSVSPSTFARGAWDQPHLSLDTASRSLVPFGCLLLCYTHELP", "length": 129, "header": "tr|A0A9J7JWA6-1|A0A9J7JWA6_CRIGR Isoform 1 of Ubiquitin-related modifier 1 OS=Cricetulus griseus OX=10029 GN=Urm1 PE=3 SV=1 CANONICAL=A0A9J7JWA6-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QP34-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP34/entry", "sequence": { "sequence": "MAAPLCVEVQFGGGAELLFDGVKKHQVTLPGQEGPWDIRNLLVWIKKNLLKERPELFIQGESVRPGILVLINDADWELLGELDYQLQDQDSILFISTLHGG", "length": 101, "header": "tr|A0A8C2QP34-1|A0A9J7JWA6_CRIGR Computationally mapped isoform of Ubiquitin-related modifier 1 OS=Cricetulus griseus OX=10029 GN=Urm1 PE=3 SV=1 CANONICAL=A0A9J7JWA6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JWA6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWA6/entry", "sequence": { "sequence": "MAAPLCVEVQFGGGAELLFDGVKKHQVTLPGQEGPWDIRNLLVWIKKNLLKERPELFIQGESVESWTTSCRTRTASSSSPHCTAAEGSSVSPSTFARGAWDQPHLSLDTASRSLVPFGCLLLCYTHELP", "length": 129, "header": "tr|A0A9J7JWA6-1|A0A9J7JWA6_CRIGR Isoform 1 of Ubiquitin-related modifier 1 OS=Cricetulus griseus OX=10029 GN=Urm1 PE=3 SV=1 CANONICAL=A0A9J7JWA6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QP34", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP34" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QP34", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QP34" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100765578", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765578", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "B3H7G2-1", "protein_name": "Ubiquitin-related modifier 1 homolog 2", "gene_name": "URM1-2", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MQFTLEFGGGLELLCDSVKIHKVNINLLNDSDILTMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEDKDVIVFISTLHGG", "length": 99 }, "evidence": [ { "id": "A0A9J7JWA6", "url": "https://omabrowser.org/oma/group/A0A9J7JWA6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F2Z4T6-1", "protein_name": "Ubiquitin-related modifier 1", "gene_name": "urm1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAAPLGLHLEFGGGAELLFDGVKNHHVTLPDQSNPWDMKQLLAWIRGNMLKERPELFMQGDTVRPGILVLINDADWELMGELDYQLQDKDNVVFISTLHGG", "length": 101 }, "evidence": [ { "id": "A0A9J7JWA6", "url": "https://omabrowser.org/oma/group/A0A9J7JWA6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "P40554-1", "protein_name": "Ubiquitin-related modifier 1", "gene_name": "URM1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MVNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGEKDYILEDGDIISFTSTLHGG", "length": 99 }, "evidence": [ { "id": "A0A9J7JWA6", "url": "https://omabrowser.org/oma/group/A0A9J7JWA6/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q148F0-1", "protein_name": "Ubiquitin-related modifier 1", "gene_name": "URM1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAAPLSVEVEFGGGAELLFDGVKKHQVTLPGQEEPWDIRSLLVWIKKNLLKERPELFIQGDSVRPGILVLVNDADWELLGELDYQLQDQDSVLFISTLHGG", "length": 101 }, "evidence": [ { "id": "A0A9J7JWA6", "url": "https://omabrowser.org/oma/group/A0A9J7JWA6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q54QN0-1", "protein_name": "Ubiquitin-related modifier 1 homolog", "gene_name": "urm1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKVKIELSGGLELLFDKKKVHEIEFSDKNEIPLKDLILYMRDNLLKERSELFVVDDTVRPGILVLINDADWELFGGISYNVEDKDTIIFISTLHGG", "length": 96 }, "evidence": [ { "id": "A0A9J7JWA6", "url": "https://omabrowser.org/oma/group/A0A9J7JWA6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q5ZJU4-1", "protein_name": "Ubiquitin-related 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"protein_names": [ { "name": "Protein FRA10AC1 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7JKU2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKU2/entry#names_and_taxonomy" } ] }, { "name": "protein FRA10AC1 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003500758", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500758" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 117 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613805.1) and transcript sequence (IACG01091342.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003500758", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500758" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKU2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKU2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100753320", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKU2", "locus": {} } ], "crossref": [ { "id": "100753320", "url": "https://www.ncbi.nlm.nih.gov/gene/100753320", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019129", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019129", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050645", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050645", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100753320", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753320", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FHSLDQY", "url": "https://omabrowser.org/oma/group/FHSLDQY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FPR2", "url": "https://www.orthodb.org/?gene=A0A9J7FPR2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JKU2", "url": "https://www.orthodb.org/?gene=A0A9J7JKU2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3H9B7", "url": "https://www.orthodb.org/?gene=G3H9B7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11567", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11567", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11567:SF25", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11567:SF25", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09725", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09725", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003500758", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500758", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FPR2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPR2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FPR2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPR2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JKU2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKU2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JKU2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKU2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3H9B7", "url": "https://www.uniprot.org/uniprotkb/G3H9B7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3H9B7-1", "url": "https://www.uniprot.org/uniprotkb/G3H9B7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLGHGGYDSDFSDDEQGGESSIKKKKKTVEDELLLTKPFQKEKHGKVVHKQVAADLLDREEARNRRFHLIAMDAYQRHTKFVNDYILYYGGKREDFRRLGENDKTDLDVIRENHRFLWNEEDEADMTWEKRLAKKYYDKLFKEYCIADLSRYKENKFGFRWRIEKEVISGKGQFFCGNKRCDEKEGLKSWEVNFGYIEHGEKRNALVKLRLCQECSFKLNFHHRRKEVKSKKRKAKTKIEYDDSPHKKSKSSSEAAKGKDEGHSSSKRSEDSRNTGDTDEEDDASESELWKGPLPETDEKSQEEEFDDYFQDLFL", "length": 315, "header": "tr|A0A9J7JKU2-1|A0A9J7JKU2_CRIGR Isoform 1 of Protein FRA10AC1 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100753320 PE=4 SV=1 CANONICAL=A0A9J7JKU2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FPR2-1", "url": 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"tr|G3H9B7-1|A0A9J7JKU2_CRIGR Computationally mapped isoform of Protein FRA10AC1 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100753320 PE=4 SV=1 CANONICAL=A0A9J7JKU2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H9B7", "url": "https://www.uniprot.org/uniprotkb/G3H9B7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_003614797.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016834947", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016834947" } ] }, { "annotation": "Involved in normal synaptic function through regulation of Ca(2+) influx and neurotransmitter release in photoreceptor synaptic terminals and in auditory transmission. 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Calcium-binding protein 4 isoform X1 OS=Cricetulus griseus OX=10029 GN=Cabp4 PE=4 SV=1 CANONICAL=A0A9J7JK67-1" }, "locus": {} }, { "isoform_ac": "G3I3Z3-1", "url": "https://www.uniprot.org/uniprotkb/G3I3Z3/entry", "sequence": { "sequence": "MATEQGSQLLPGPQKTPEGAVSPGSTAEGSTLARRRSKKEKELPRSQKASSGKQSSGRCSEASGSSKNPPKTRAGQDEPSSAPSSQASHRQSHRHRPDPQQDAAQRTYGPLLNRIFGKDRELGPEELEELQTAFEEFDTDRDGYIGYRELGDCMRTLGYMPTEMELLEVSQHVKMRMGGFVDFEEFVELISPKLREETAHMLGVRELRIAFREFDKDRDGRITVAELRQAAPALLGEPLEGTELDEMLRDMDLNGDGTIDFDEFVKMLSTG", "length": 271, "header": "tr|G3I3Z3-1|A0A9J7JK67_CRIGR Computationally mapped isoform of Calcium-binding protein 4 isoform X1 OS=Cricetulus griseus OX=10029 GN=Cabp4 PE=4 SV=1 CANONICAL=A0A9J7JK67-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3I3Z3", "url": "https://www.uniprot.org/uniprotkb/G3I3Z3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3I3Z3", "url": "https://www.uniprot.org/uniprotkb/G3I3Z3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100759357", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759357", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A5G2QL39-1", "protein_name": "Calcium-binding protein 4", "gene_name": "CABP4", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MATEQRGEQHGAPQQPPGGVEASGRGAEGLPLTRRRSSKKKGLRGSRKDSGSSGEQPPPQGPEAPESSKNPSRTREGQEGPGPVAPALASRRQSHRHRPASQHDAAQRTYGPLLNRIFGKDRELGPEELDELRAAFEEFDTDHDGHIGYRELGECMRTLGYMPTEMELIEVSQHVKMRMGGRVDFEEFVEMMGPKLREETAHMLGVRELRIAFREFDRDRDGRITVAELRQAAPALLGEPLAGSELDEMLREVDLNGDGTVDFDGEFPILPATPPHSSGSQAEPSASGAAGGGVSLTWTCPSPAPSLPQSL", "length": 311 }, "evidence": [ { "id": "A0A9J7JK67", "url": "https://omabrowser.org/oma/group/A0A9J7JK67/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8V0Z718-1", "protein_name": "Calcium binding protein 4", "gene_name": "CABP4", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPRSRGDKGAPKNTEASGKGKRGEVGESAPKAPEAGGPPGSPDAESRHGGHGRKNSKKGAGDPHAASTKAYSPFLNTVFGKERELSPEELDELLDAFKEFDTDQDGFISYKDLGACMRTLGYMPTEMELIEISQHIKMRMGGRVDFEDFVQMMGPKLREETAHMVGVRELKIAFREFDVNGDGEISSAEMRQAIAALLGEQLKAQEVDEILQDVDLNGDGRVDFDEFVMMLSSR", "length": 234 }, "evidence": [ { "id": "A0A9J7JK67", "url": "https://omabrowser.org/oma/group/A0A9J7JK67/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZY59-1", "protein_name": "Calcium-binding protein 4", "gene_name": "Cabp4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": 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], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JK67", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK67" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "calcium channel regulator activity", "id": "GO:0005246", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005246", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JK67", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK67" } ], "pmid": "" }, { "name": "transmembrane transporter binding", "id": "GO:0044325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044325", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JK67", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK67" } ], "pmid": "" }, { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JK67", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK67" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "visual perception", "id": "GO:0007601", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007601", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JK67", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK67" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JK67", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK67" }, { "id": "PS50222", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50222" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EF-hand", "eco_id": "ECO_0000259", "start_pos": 125, "end_pos": 160, "start_aa": "Glu", "end_aa": "Met", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JKW5-1", "uniprot_ac": "A0A9J7JKW5", "uniprot_id": "A0A9J7JKW5_CRIGR", "mass": { "chemical_mass": 99663.0, "monoisotopic_mass": 99663.0 }, "refseq": { "ac": "XP_007649185", "name": "serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007649185" }, "gene_names": [ { "name": "Ppp6r3", "type": "recommended", "evidence": [ { "id": "A0A9J7JKW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKW5" } ] }, { "name": "Ppp6r3", "type": "synonym", "evidence": [ { "id": "XP_007649185", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007649185" } ] } ], "protein_names": [ { "name": "Serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7JKW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKW5/entry#names_and_taxonomy" } ] }, { "name": "serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007649185", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007649185" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614870.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007649185", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007649185" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKW5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKW5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ppp6r3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKW5", "locus": {} } ], "crossref": [ { "id": "100761104", "url": "https://www.ncbi.nlm.nih.gov/gene/100761104", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007587", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007587", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100761104", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761104", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NEMRHAD", "url": "https://omabrowser.org/oma/group/NEMRHAD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QF59", "url": "https://www.orthodb.org/?gene=A0A8C2QF59", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FNX7", "url": "https://www.orthodb.org/?gene=A0A9J7FNX7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FP46", "url": "https://www.orthodb.org/?gene=A0A9J7FP46", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FPP0", "url": "https://www.orthodb.org/?gene=A0A9J7FPP0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FR88", "url": "https://www.orthodb.org/?gene=A0A9J7FR88", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FRN0", "url": "https://www.orthodb.org/?gene=A0A9J7FRN0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FSS3", "url": "https://www.orthodb.org/?gene=A0A9J7FSS3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JI92", "url": "https://www.orthodb.org/?gene=A0A9J7JI92", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JKW5", "url": "https://www.orthodb.org/?gene=A0A9J7JKW5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JLS9", "url": "https://www.orthodb.org/?gene=A0A9J7JLS9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3I5B3", "url": "https://www.orthodb.org/?gene=G3I5B3", "database": "OrthoDB", "categories": [ "Protein 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"database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FNX7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNX7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FP46", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP46", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FP46-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP46-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FPP0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPP0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FPP0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPP0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FR88", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FR88", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FR88-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FR88-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FRN0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRN0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FRN0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRN0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FRP7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRP7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FRP7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRP7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FSS3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSS3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FSS3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSS3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JI92", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JI92", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JI92-1", "url": 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"MFWKFDLHSSSHIDTLLEREDVTLKELMDEEDVLQECKAQNRKLIEFLLKAECLEDLVSFIIEEPPQDMDEKIRYKYPNISCELLTSDVSQMNDRLGEDESLLLKLYSFLLNESPLNPLLASFFSKVLSILISRKPEQIVDFLKKKRDFVDLIIKHIGTSAIMDLLLRLLTCIEPPQPRQDVLNWLNEERIIQRLVEIVHPSQEEDRHSNASQSLCEIVRLSRDQMLQVQNSTEPDPLLATLEKQEIIEQLLSNIFHKEKNESAIVSAIQILLTLLETRRPTFEGHIEICPPGMGHSACSVNKSVLEAIRGRLGSFHELLLEPPKKSVMKTTWGILDPPVGNTRLNVIRLISSLLQTNTSSINGDLMELNSIGVILDMFFKYTWNNFLHTQVEICIALILASPFENAENGTITDQDSAGDNLLLKHLFQKCQLIERILEAWDTNEKKQAEGGRRHGYMGHLTRIANCIVHSTDKGPNSVLVQQLIKDLPDEVRERWETFCTSSLGETNKRNTVDLVTTCHIHSSSDDEIDFKDTGFSQDSSLQQAFSDYQMQQMTSNFIDQFGFNDEKFADQDDIGNVSFDRVSDINFTLNTNESGNIALFEACCKERIQQFDDGGSDEEDIWEEKHIAFTPESQRRSSSGSTDSEESTDSEEEDGAKQDLFESSSANTEDKMEVDLNEPPTWSANFDVPMETTHGAPLDSVGSDVWSTEEPMPAKETGWASFSEFTSSLSTKESLRSNSPVEMETSTEPVDPLTPGAAALAPQPEAPGSVAMEASSDGEEDAESTDKVTETVMNGGMKETLSLTVDAKTETAVFKSEEEKLSTSQDAACKDVEESPEPAEAKCAAPRTPSSSPEQSHLLLRLSQWSEGIGQAKASAAEGPRPYTRPRR", "length": 889, "header": "tr|A0A9J7JKW5-1|A0A9J7JKW5_CRIGR Isoform 1 of Serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ppp6r3 PE=3 SV=1 CANONICAL=A0A9J7JKW5-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QF59-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QF59/entry", "sequence": { "sequence": "MFWKFDLHSSSHIDTLLEREDVTLKELMDEEDVLQECKAQNRKLIEFLLKAECLEDLVSFIIEEPPQDMDEKIRYKYPNISCELLTSDVSQMNDRLGEDESLLLKLYSFLLNESPLNPLLASFFSKVLSILISRKPEQIVDFLKKKRDFVDLIIKHIGTSAIMDLLLRLLTCIEPPQPRQDVLNWLNEERIIQRLVEIVHPSQEEDRHSNASQSLCEIVRLSRDQMLQVQNSTEPDPLLATLEKQEIIEQLLSNIFHKEKNESAIVSAIQILLTLLETRRPTFEGHIEICPPGMGHSACSVNKSVLEAIRGRLGSFHELLLEPPKKSVMKTTWGILDPPVGNTRLNVIRLISSLLQTNTSSINGDLMELNSIGVILDMFFKYTWNNFLHTQVEICIALILASPFENAENGTITDQDSAGDNLLLKHLFQKCQLIERILEAWDTNEKKQAEGGRRHGYMGHLTRIANCIVHSTDKGPNSVLVQQLIKDLPDEVRERWETFCTSSLGETNKRNTVDLAFSDYQMQQMTSNFIDQFGFNDEKFADQDDIGNVSFDRVSDINFTLNTNESGNIALFEACCKERIQQFDDGGSDEEDIWEEKHIAFTPESQRRSSSGSTDSEESTDSEEEDGAKQDLFESSSANTEDKMEVDLNEPPTWSANFDVPMETTHGAPLDSVGSDVWSTEEPMPAKETGWASFSEFTSSLSTKESLRSNSPVEMETSTEPVDPLTPGAAALAPQPEAPGSVAMEASSDGEEDAESTDKVTETVMNGGMKETLSLTVDAKTETAVFKSEEEKLSTSQDAACKDVEESPEPAEAKCAAPRTPSSSPEQRTDQPSMPSDTSVNGPV", "length": 844, "header": "tr|A0A8C2QF59-1|A0A9J7JKW5_CRIGR Computationally mapped isoform of Serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ppp6r3 PE=3 SV=1 CANONICAL=A0A9J7JKW5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FNX7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNX7/entry", "sequence": { "sequence": "MFWKFDLHSSSHIDTLLEREDVTLKELMDEEDVLQECKAQNRKLIEFLLKAECLEDLVSFIIEEPPQDMDEKIRYKYPNISCELLTSDVSQMNDRLGEDESLLLKLYSFLLNESPLNPLLASFFSKVLSILISRKPEQIVDFLKKKRDFVDLIIKHIGTSAIMDLLLRLLTCIEPPQPRQDVLNWLNEERIIQRLVEIVHPSQEEDRHSNASQSLCEIVRLSRDQMLQVQNSTEPDPLLATLEKQEIIEQLLSNIFHKEKNESAIVSAIQILLTLLETRRPTFEGHIEICPPGMGHSACSVNKSVLEAIRGRLGSFHELLLEPPKKSVMKTTWGILDPPVGNTRLNVIRLISSLLQTNTSSINGDLMELNSIGVILDMFFKYTWNNFLHTQVEICIALILASPFENAENGTITDQDSAGDNLLLKHLFQKCQLIERILEAWDTNEKKQAEGGRRHGYMGHLTRIANCIVHSTDKGPNSVLVQQLIKDLPDEVRERWETFCTSSLGETNKRNTVDLFGFNDEKFADQDDIGNVSFDRVSDINFTLNTNESGNIALFEACCKERIQQFDDGGSDEEDIWEEKHIAFTPESQRRSSSGSTDSEESTDSEEEDGAKQDLFESSSANTEDKMEVDLNEPPTWSANFDVPMETTHGAPLDSVGSDVWSTEEPMPAKETGWASFSEFTSSLSTKESLRSNSPVEMETSTEPVDPLTPGAAALAPQPEAPGSVAMEASSDGEEDAESTDKVTETVMNGGMKETLSLTVDAKTETAVFKSEEEKLSTSQDAACKDVEESPEPAEAKCAAPRTPSSSPEQSHLLLRLSQWSEGIGQAKASAAEGPRPYTRPRR", "length": 843, "header": "tr|A0A9J7FNX7-1|A0A9J7JKW5_CRIGR Computationally mapped isoform of Serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ppp6r3 PE=3 SV=1 CANONICAL=A0A9J7JKW5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FP46-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP46/entry", "sequence": { "sequence": "MFWKFDLHSSSHIDTLLEREDVTLKELMDEEDVLQECKAQNRKLIEFLLKAECLEDLVSFIIEEPPQDMDEKIRYKYPNISCELLTSDVSQMNDRLGEDESLLLKLYSFLLNESPLNPLLASFFSKVLSILISRKPEQIVDFLKKKRDFVDLIIKHIGTSAIMDLLLRLLTCIEPPQPRQDVLNWLNEERIIQRLVEIVHPSQEEDRHSNASQSLCEIVRLSRDQMLQVQNSTEPDPLLATLEKQEIIEQLLSNIFHKEKNESAIVSAIQILLTLLETRRPTFEGHIEICPPGMGHSACSVNKSVLEAIRGRLGSFHELLLEPPKKSVMKTTWGILDPPVGNTRLNVIRLISSLLQTNTSSINGDLMELNSIGVILDMFFKYTWNNFLHTQVEICIALILASPFENAENGTITDQDSAGDNLLLKHLFQKCQLIERILEAWDTNEKKQAEGGRRHGYMGHLTRIANCIVHSTDKGPNSVLVQQLIKDLPDEVRERWETFCTSSLGETNKRNTVDLFGFNDEKFADQDDIGNVSFDRVSDINFTLNTNESGNIALFEACCKERIQQFDDGGSDEEDIWEEKHIAFTPESQRRSSSGSTDSEESTDSEEEDGAKQDLFESSSANTEDKMEVDLNEPPTWSANFDVPMETTHGAPLDSVGSDVWSTEEPMPAKETGWASFSEFTSSLSTKESLRSNSPVEMETSTEPVDPLTPGAAALAPQPEAPGSVAMEASSDGEEDAESTDKVTETVMNGGMKETLSLTVDAKTETAVFKSEEEKLSTSQDAACKDVEESPEPAEAKCAAPRTPSSSPEQRTDQPSMPSDTSVNGPV", "length": 827, "header": "tr|A0A9J7FP46-1|A0A9J7JKW5_CRIGR Computationally mapped isoform of Serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ppp6r3 PE=3 SV=1 CANONICAL=A0A9J7JKW5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FPP0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPP0/entry", "sequence": { "sequence": "MFWKFDLHSSSHIDTLLEREDVTLKELMDEEDVLQECKAQNRKLIEFLLKAECLEDLVSFIIEEPPQDMDEKIRYKYPNISCELLTSDVSQMNDRLGEDESLLLKLYSFLLNESPLNPLLASFFSKVLSILISRKPEQIVDFLKKKRDFVDLIIKHIGTSAIMDLLLRLLTCIEPPQPRQDVLNWLNEERIIQRLVEIVHPSQEEDRHSNASQSLCEIVRLSRDQMLQVQNSTEPDPLLATLEKQEIIEQLLSNIFHKEKNESAIVSAIQILLTLLETRRPTFEGHIEICPPGMGHSACSVNKSVLEAIRGRLGSFHELLLEPPKKSVMKTTWGILDPPVGNTRLNVIRLISSLLQTNTSSINGDLMELNSIGVILDMFFKYTWNNFLHTQVEICIALILASPFENAENGTITDQDSAGDNLLLKHLFQKCQLIERILEAWDTNEKKQAEGGRRHGYMGHLTRIANCIVHSTDKGPNSVLVQQLIKDLPDEVRERWETFCTSSLGETNKRNTVDLMQQMTSNFIDQFGFNDEKFADQDDIGNVSFDRVSDINFTLNTNESGNIALFEACCKERIQQFDDGGSDEEDIWEEKHIAFTPESQRRSSSGSTDSEESTDSEEEDGAKQDLFESSSANTEDKMEVDLNEPPTWSANFDVPMETTHGAPLDSVGSDVWSTEEPMPAKETGWASFSEFTSSLSTKESLRSNSPVEMETSTEPVDPLTPGAAALAPQPEAPGSVAMEASSDGEEDAESTDKVTETVMNGGMKETLSLTVDAKTETAVFKSEEEKLSTSQDAACKDVEESPEPAEAKCAAPRTPSSSPEQSHLLLRLSQWSEGIGQAKASAAEGPRPYTRPRR", "length": 854, "header": "tr|A0A9J7FPP0-1|A0A9J7JKW5_CRIGR Computationally mapped isoform of Serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ppp6r3 PE=3 SV=1 CANONICAL=A0A9J7JKW5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FR88-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FR88/entry", "sequence": { "sequence": "MFWKFDLHSSSHIDTLLEREDVTLKELMDEEDVLQECKAQNRKLIEFLLKAECLEDLVSFIIEEPPQDMDEKIRYKYPNISCELLTSDVSQMNDRLGEDESLLLKLYSFLLNESPLNPLLASFFSKVLSILISRKPEQIVDFLKKKRDFVDLIIKHIGTSAIMDLLLRLLTCIEPPQPRQDVLNWLNEERIIQRLVEIVHPSQEEDRHSNASQSLCEIVRLSRDQMLQVQNSTEPDPLLATLEKQEIIEQLLSNIFHKEKNESAIVSAIQILLTLLETRRPTFEGHIEICPPGMGHSACSVNKSVLEAIRGRLGSFHELLLEPPKKSVMKTTWGILDPPVGNTRLNVIRLISSLLQTNTSSINGDLMELNSIGVILDMFFKYTWNNFLHTQVEICIALILASPFENAENGTITDQDSAGDNLLLKHLFQKCQLIERILEAWDTNEKKQAEGGRRHGYMGHLTRIANCIVHSTDKGPNSVLVQQLIKDLPDEVRERWETFCTSSLGETNKRNTVDLVTTCHIHSSSDDEIDFKDTGFSQDSSLQQMQQMTSNFIDQFGFNDEKFADQDDIGNVSFDRVSDINFTLNTNESGNIALFEACCKERIQQFDDGGSDEEDIWEEKHIAFTPESQRRSSSGSTDSEESTDSEEEDGAKQDLFESSSANTEDKMEVDLNEPPTWSANFDVPMETTHGAPLDSVGSDVWSTEEPMPAKETGWASFSEFTSSLSTKESLRSNSPVEMETSTEPVDPLTPGAAALAPQPEAPGSVAMEASSDGEEDAESTDKVTETVMNGGMKETLSLTVDAKTETAVFKSEEEKLSTSQDAACKDVEESPEPAEAKCAAPRTPSSSPEQSHLLLRLSQWSEGIGQAKASAAEGPRPYTRPRR", "length": 883, "header": "tr|A0A9J7FR88-1|A0A9J7JKW5_CRIGR Computationally mapped isoform of Serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ppp6r3 PE=3 SV=1 CANONICAL=A0A9J7JKW5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FRN0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRN0/entry", "sequence": { "sequence": "MFWKFDLHSSSHIDTLLEREDVTLKELMDEEDVLQECKAQNRKLIEFLLKAECLEDLVSFIIEEPPQDMDEKIRYKYPNISCELLTSDVSQMNDRLGEDESLLLKLYSFLLNESPLNPLLASFFSKVLSILISRKPEQIVDFLKKKRDFVDLIIKHIGTSAIMDLLLRLLTCIEPPQPRQDVLNWLNEERIIQRLVEIVHPSQEEDRHSNASQSLCEIVRLSRDQMLQVQNSTEPDPLLATLEKQEIIEQLLSNIFHKEKNESAIVSAIQILLTLLETRRPTFEGHIEICPPGMGHSACSVNKSVLEAIRGRLGSFHELLLEPPKKSVMKTTWGILDPPVGNTRLNVIRLISSLLQTNTSSINGDLMELNSIGVILDMFFKYTWNNFLHTQVEICIALILASPFENAENGTITDQDSAGDNLLLKHLFQKCQLIERILEAWDTNEKKQAEGGRRHGYMGHLTRIANCIVHSTDKGPNSVLVQQLIKDLPDEVRERWETFCTSSLGETNKRNTVDLAFSDYQMQQMTSNFIDQFGFNDEKFADQDDIGNVSFDRVSDINFTLNTNESGNIALFEACCKERIQQFDDGGSDEEDIWEEKHIAFTPESQRRSSSGSTDSEESTDSEEEDGAKQDLFESSSANTEDKMEVDLNEPPTWSANFDVPMETTHGAPLDSVGSDVWSTEEPMPAKETGWASFSEFTSSLSTKESLRSNSPVEMETSTEPVDPLTPGAAALAPQPEAPGSVAMEASSDGEEDAESTDKVTETVMNGGMKETLSLTVDAKTETAVFKSEEEKLSTSQDAACKDVEESPEPAEAKCAAPRTPSSSPEQSHLLLRLSQWSEGIGQAKASAAEGPRPYTRPRR", "length": 860, "header": "tr|A0A9J7FRN0-1|A0A9J7JKW5_CRIGR Computationally mapped isoform of Serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ppp6r3 PE=3 SV=1 CANONICAL=A0A9J7JKW5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FRP7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRP7/entry", "sequence": { "sequence": "MFWKFDLHSSSHIDTLLEREDVTLKELMDEEDVLQECKAQNRKLIEFLLKAECLEDLVSFIIEEPPQDMDEKIRYKYPNISCELLTSDVSQMNDRLGEDESLLLKLYSFLLNESPLNPLLASFFSKVLSILISRKPEQIVDFLKKKRDFVDLIIKHIGTSAIMDLLLRLLTCIEPPQPRQDVLNWLNEERIIQRLVEIVHPSQEEDRHSNASQSLCEIVRLSRDQMLQVQNSTEPDPLLATLEKQEIIEQLLSNIFHKEKNESAIVSAIQILLTLLETRRPTFEGHIEICPPGMGHSACSVNKSVLEAIRGRLGSFHELLLEPPKKSVMKTTWGILDPPVGNTRLNVIRLISSLLQTNTSSINGDLMELNSIGVILDMFFKYTWNNFLHTQVEICIALILASPFENAENGTITDQDSAGDNLLLKHLFQKCQLIERILEAWDTNEKKQAEGGRRHGYMGHLTRIANCIVHSTDKGPNSVLVQQLIKDLPDEVRERWETFCTSSLGETNKRNTVDLVTTCHIHSSSDDEIDFKDTGFSQDSSLQQFGFNDEKFADQDDIGNVSFDRVSDINFTLNTNESGNIALFEACCKERIQQFDDGGSDEEDIWEEKHIAFTPESQRRSSSGSTDSEESTDSEEEDGAKQDLFESSSANTEDKMEVDLNEPPTWSANFDVPMETTHGAPLDSVGSDVWSTEEPMPAKETGWASFSEFTSSLSTKESLRSNSPVEMETSTEPVDPLTPGAAALAPQPEAPGSVAMEASSDGEEDAESTDKVTETVMNGGMKETLSLTVDAKTETAVFKSEEEKLSTSQDAACKDVEESPEPAEAKCAAPRTPSSSPEQRTDQPSMPSDTSVNGPV", "length": 856, "header": "tr|A0A9J7FRP7-1|A0A9J7JKW5_CRIGR Computationally mapped isoform of Serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ppp6r3 PE=3 SV=1 CANONICAL=A0A9J7JKW5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FSS3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSS3/entry", "sequence": { "sequence": "MFWKFDLHSSSHIDTLLEREDVTLKELMDEEDVLQECKAQNRKLIEFLLKAECLEDLVSFIIEEPPQDMDEKIRYKYPNISCELLTSDVSQMNDRLGEDESLLLKLYSFLLNESPLNPLLASFFSKVLSILISRKPEQIVDFLKKKRDFVDLIIKHIGTSAIMDLLLRLLTCIEPPQPRQDVLNWLNEERIIQRLVEIVHPSQEEDRHSNASQSLCEIVRLSRDQMLQVQNSTEPDPLLATLEKQEIIEQLLSNIFHKEKNESAIVSAIQILLTLLETRRPTFEGHIEICPPGMGHSACSVNKSVLEAIRGRLGSFHELLLEPPKKSVMKTTWGILDPPVGNTRLNVIRLISSLLQTNTSSINGDLMELNSIGVILDMFFKYTWNNFLHTQVEICIALILASPFENAENGTITDQDSAGDNLLLKHLFQKCQLIERILEAWDTNEKKQAEGGRRHGYMGHLTRIANCIVHSTDKGPNSVLVQQLIKDLPDEVRERWETFCTSSLGETNKRNTVDLVTTCHIHSSSDDEIDFKDTGFSQDSSLQQFGFNDEKFADQDDIGNVSFDRVSDINFTLNTNESGNIALFEACCKERIQQFDDGGSDEEDIWEEKHIAFTPESQRRSSSGSTDSEESTDSEEEDGAKQDLFESSSANTEDKMEVDLNEPPTWSANFDVPMETTHGAPLDSVGSDVWSTEEPMPAKETGWASFSEFTSSLSTKESLRSNSPVEMETSTEPVDPLTPGAAALAPQPEAPGSVAMEASSDGEEDAESTDKVTETVMNGGMKETLSLTVDAKTETAVFKSEEEKLSTSQDAACKDVEESPEPAEAKCAAPRTPSSSPEQSHLLLRLSQWSEGIGQAKASAAEGPRPYTRPRR", "length": 872, "header": "tr|A0A9J7FSS3-1|A0A9J7JKW5_CRIGR Computationally mapped isoform of Serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ppp6r3 PE=3 SV=1 CANONICAL=A0A9J7JKW5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JI92-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JI92/entry", "sequence": { "sequence": "MFWKFDLHSSSHIDTLLEREDVTLKELMDEEDVLQECKAQNRKLIEFLLKAECLEDLVSFIIEEPPQDMDEKIRYKYPNISCELLTSDVSQMNDRLGEDESLLLKLYSFLLNESPLNPLLASFFSKVLSILISRKPEQIVDFLKKKRDFVDLIIKHIGTSAIMDLLLRLLTCIEPPQPRQDVLNWLNEERIIQRLVEIVHPSQEEDRHSNASQSLCEIVRLSRDQMLQVQNSTEPDPLLATLEKQEIIEQLLSNIFHKEKNESAIVSAIQILLTLLETRRPTFEGHIEICPPGMGHSACSVNKSVLEAIRGRLGSFHELLLEPPKKSVMKTTWGILDPPVGNTRLNVIRLISSLLQTNTSSINGDLMELNSIGVILDMFFKYTWNNFLHTQVEICIALILASPFENAENGTITDQDSAGDNLLLKHLFQKCQLIERILEAWDTNEKKQAEGGRRHGYMGHLTRIANCIVHSTDKGPNSVLVQQLIKDLPDEVRERWETFCTSSLGETNKRNTVDLMQQMTSNFIDQFGFNDEKFADQDDIGNVSFDRVSDINFTLNTNESGNIALFEACCKERIQQFDDGGSDEEDIWEEKHIAFTPESQRRSSSGSTDSEESTDSEEEDGAKQDLFESSSANTEDKMEVDLNEPPTWSANFDVPMETTHGAPLDSVGSDVWSTEEPMPAKETGWASFSEFTSSLSTKESLRSNSPVEMETSTEPVDPLTPGAAALAPQPEAPGSVAMEASSDGEEDAESTDKVTETVMNGGMKETLSLTVDAKTETAVFKSEEEKLSTSQDAACKDVEESPEPAEAKCAAPRTPSSSPEQRTDQPSMPSDTSVNGPV", "length": 838, "header": "tr|A0A9J7JI92-1|A0A9J7JI92_CRIGR Computationally mapped isoform of Serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform X11 OS=Cricetulus griseus OX=10029 GN=Ppp6r3 PE=3 SV=1 CANONICAL=A0A9J7JKW5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JKW5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKW5/entry", "sequence": { "sequence": "MFWKFDLHSSSHIDTLLEREDVTLKELMDEEDVLQECKAQNRKLIEFLLKAECLEDLVSFIIEEPPQDMDEKIRYKYPNISCELLTSDVSQMNDRLGEDESLLLKLYSFLLNESPLNPLLASFFSKVLSILISRKPEQIVDFLKKKRDFVDLIIKHIGTSAIMDLLLRLLTCIEPPQPRQDVLNWLNEERIIQRLVEIVHPSQEEDRHSNASQSLCEIVRLSRDQMLQVQNSTEPDPLLATLEKQEIIEQLLSNIFHKEKNESAIVSAIQILLTLLETRRPTFEGHIEICPPGMGHSACSVNKSVLEAIRGRLGSFHELLLEPPKKSVMKTTWGILDPPVGNTRLNVIRLISSLLQTNTSSINGDLMELNSIGVILDMFFKYTWNNFLHTQVEICIALILASPFENAENGTITDQDSAGDNLLLKHLFQKCQLIERILEAWDTNEKKQAEGGRRHGYMGHLTRIANCIVHSTDKGPNSVLVQQLIKDLPDEVRERWETFCTSSLGETNKRNTVDLVTTCHIHSSSDDEIDFKDTGFSQDSSLQQAFSDYQMQQMTSNFIDQFGFNDEKFADQDDIGNVSFDRVSDINFTLNTNESGNIALFEACCKERIQQFDDGGSDEEDIWEEKHIAFTPESQRRSSSGSTDSEESTDSEEEDGAKQDLFESSSANTEDKMEVDLNEPPTWSANFDVPMETTHGAPLDSVGSDVWSTEEPMPAKETGWASFSEFTSSLSTKESLRSNSPVEMETSTEPVDPLTPGAAALAPQPEAPGSVAMEASSDGEEDAESTDKVTETVMNGGMKETLSLTVDAKTETAVFKSEEEKLSTSQDAACKDVEESPEPAEAKCAAPRTPSSSPEQSHLLLRLSQWSEGIGQAKASAAEGPRPYTRPRR", "length": 889, "header": "tr|A0A9J7JKW5-1|A0A9J7JKW5_CRIGR Isoform 1 of Serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ppp6r3 PE=3 SV=1 CANONICAL=A0A9J7JKW5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JLS9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLS9/entry", "sequence": { "sequence": "MFWKFDLHSSSHIDTLLEREDVTLKELMDEEDVLQECKAQNRKLIEFLLKAECLEDLVSFIIEEPPQDMDEKIRYKYPNISCELLTSDVSQMNDRLGEDESLLLKLYSFLLNESPLNPLLASFFSKVLSILISRKPEQIVDFLKKKRDFVDLIIKHIGTSAIMDLLLRLLTCIEPPQPRQDVLNWLNEERIIQRLVEIVHPSQEEDRHSNASQSLCEIVRLSRDQMLQVQNSTEPDPLLATLEKQEIIEQLLSNIFHKEKNESAIVSAIQILLTLLETRRPTFEGHIEICPPGMGHSACSVNKSVLEAIRGRLGSFHELLLEPPKKSVMKTTWGILDPPVGNTRLNVIRLISSLLQTNTSSINGDLMELNSIGVILDMFFKYTWNNFLHTQVEICIALILASPFENAENGTITDQDSAGDNLLLKHLFQKCQLIERILEAWDTNEKKQAEGGRRHGYMGHLTRIANCIVHSTDKGPNSVLVQQLIKDLPDEVRERWETFCTSSLGETNKRNTVDLVTTCHIHSSSDDEIDFKDTGFSQDSSLQQMQQMTSNFIDQFGFNDEKFADQDDIGNVSFDRVSDINFTLNTNESGNIALFEACCKERIQQFDDGGSDEEDIWEEKHIAFTPESQRRSSSGSTDSEESTDSEEEDGAKQDLFESSSANTEDKMEVDLNEPPTWSANFDVPMETTHGAPLDSVGSDVWSTEEPMPAKETGWASFSEFTSSLSTKESLRSNSPVEMETSTEPVDPLTPGAAALAPQPEAPGSVAMEASSDGEEDAESTDKVTETVMNGGMKETLSLTVDAKTETAVFKSEEEKLSTSQDAACKDVEESPEPAEAKCAAPRTPSSSPEQRTDQPSMPSDTSVNGPV", "length": 867, "header": "tr|A0A9J7JLS9-1|A0A9J7JLS9_CRIGR Computationally mapped isoform of Serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform X5 OS=Cricetulus griseus OX=10029 GN=Ppp6r3 PE=3 SV=1 CANONICAL=A0A9J7JKW5-1" }, "locus": {} }, { "isoform_ac": "G3I5B3-1", "url": "https://www.uniprot.org/uniprotkb/G3I5B3/entry", "sequence": { "sequence": "MFWKFDLHSSSHIDTLLEREDVTLKELMDEEDVLQECKAQNRKLIEFLLKAECLEDLVSFIIEEPPQDMDEKIRYKYPNISCELLTSDVSQMNDRLGEDESLLLKLYSFLLNESPLNPLLASFFSKVLSILISRKPEQIVDFLKKKRDFVDLIIKHIGTSAIMDLLLRLLTCIEPPQPRQDVLNWLNEERIIQRLVEIVHPSQEEDRHSNASQSLCEIVRLSRDQMLQVQNSTEPDPLLATLEKQEIIEQLLSNIFHKEKNESAIVSAIQILLTLLETRRPTFEGHIEICPPGMGHSACSVNKSVLEAIRGRLGSFHELLLEPPKKSVMKTTWGILDPPVGNTRLNVIRLISSLLQTNTSSINGDLMELNSIGVILDMFFKYTWNNFLHTQVEICIALILASPFENAENGTITDQDSAGDNLLLKHLFQKCQLIERILEAWDTNEKKQAEGGRRHGYMGHLTRIANCIVHSTDKGPNSVLVQQLIKDLPDEVRERWETFCTSSLGETNKRNTVDLVTTCHIHSSSDDEIDFKDTGFSQDSSLQQAFSDYQMQQMTSNFIDQFGFNDEKFADQDDIGNVSFDRVSDINFTLNTNESGNIALFEACCKERIQQFDDGGSDEEDIWEEKHIAFTPESQRRSSSGSTDSEESTDSEEEDGAKQDLFESSSANTEDKMEVDLNEPPTWSANFDVPMETTHGAPLDSVGSDVWSTEEPMPAKETGWASFSEFTSSLSTKESLRSNSPVEMETSTEPVDPLTPGAAALAPQPEAPGSVAMEASSDGEEDAESTDKVTETVMNGGMKETLSLTVDAKTETAVFKSEEEKLSTSQDAACKDVEESPEPAEAKCAAPRTPSSSPEQRTDQPSMPSDTSVNGPV", "length": 873, "header": "tr|G3I5B3-1|A0A9J7JKW5_CRIGR Computationally mapped isoform of Serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ppp6r3 PE=3 SV=1 CANONICAL=A0A9J7JKW5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3I5B3", "url": "https://www.uniprot.org/uniprotkb/G3I5B3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3I5B3", "url": "https://www.uniprot.org/uniprotkb/G3I5B3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100761104", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761104", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A287AJG5-1", "protein_name": "Protein phosphatase 6 regulatory subunit 3", "gene_name": "PPP6R3", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MFWKFDLHSSSHIDTLLEREDVTLKELMDEEDVLQECKAQNRKLIEFLLKAECLEDLVSFIIEEPPQDMDEKIRYKYPNISCELLTSDVSQMNDRLGEDESLLMKLYSFLLNDPPLNPLLASFFSKVLSILISRKPEQIVDFLKKKRDFVDLIIKHIGTSAIMDLLLRLLTCIEPPQPRQDVLNWLNEEKIIQRLVEIVHPSQEEDRHSNASQSLCEIVRLSRDQMLQIQNSTEPDPLLATLEKQEIIEQLLSNIFHKEKNEPAIVSAIQVLLTLLETRRPTFEGHIEICPPGMSPSACSVNKSVLEAIRGRLGSFHELLLEPPKKSVMKTTWGVLDPPVGNTRLNVIRLISSLLQTNTSSINGDLMELNSIGVILDMFFKYTWNNFLHTQVEICIALILASPFETTENSTITDQDATGDSLLLKHLFQKCQLIERILDAWEMNEKKQAEGGRRHGYMGHLTRIANCIVHSAEKGPRSASVQQLIRDLPEEVRERWEAFCASSLGETNKRNTVDLVTTCHIHSSSDDEIDFKETGFSQDSSLQQAFSDYQMQQMTSNFIDQFGFNDEKFADQDDIGNVSFDRVSDINFTLNTNESGNIALFEACCKERIQQFDDGGSDEEDIWEEKHVAFTPESQRRSSSGSTDSEESTDSEEEDGAKPDLFEPSGANAEDKMEVDLNEPPSWSANFDVPMETAHGAALDSVGSDVWSTEESVPTKETGWASFSEFTSSLSTKDSLRSNSPVEMETSTEPMDPLTPSVAALAVQPEVPGSVAMEASSDGEEDAESTDKVTETVMNGGMKETLSLTVDAKTETAVFKSEEGRLSTSQDAACKDAEESPEPPEGKSAAPRPPSRSPEQRTEQPSVPGDAAVNGPV", "length": 873 }, "evidence": [ { "id": "A0A9J7JKW5", "url": "https://omabrowser.org/oma/group/A0A9J7JKW5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8M3AWD3-1", "protein_name": "Serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform X1", "gene_name": "ppp6r3", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MFWKFDLHSTSHIDTLLEKDDVTLTEVMDEEDVLQECKAQNHKLVDFLVRPQCMEDLVVYITQEPNDDVEEKIKYKYPNISCELLTSDVGQINDRLGEDESLLMKLYSFLQNEPPLNPLLASFFSKVLSILIGRKPEQIVEFLRKREDFVDLMIKHIGTSAIMDLLLRMLTCIEPQQLRQDVLNWLNEEKVIQRLVDMVQPSQDEDRHSNASQSLCEIIRLSRDQMFQVQGSSEPDPLLATLEKQETVEQLLSNIFDKEKNESAIVSVIQILLTLFETRRPAFEGHLEICPPGMNHPSFSVNQSILDAVRPRLKDFHQLLLEPPKKTVLNTTWGVLDPPVGNTRLNVVRLVTSLLQTNTHIINQELIALNTLGVILDMYFKYLWNNFLHTQVEICTAMVLAMPSTQSESPEINRENDQEPIRENILIKHLFQKCQLIQRILDAWGSNDKEQTEGGRRRGYMGHLTRIANSIVHNSDKGPNGSQIQQLISGLSIELPEEDRERWEAFTSGQLADTNKKNTVDLVNTHHIHSSSDDEVDFKDSGFHQDSSLQQAFSDYQMQQMTSNFIEQFGFNDEEFADQDDVGDIPFDRISDINFSLNTNESANVALFEACCKEKIQQFEDAGSDEEDIWDEKDVTFAPEAPRRPRSSGSTDSEESTDSEEEDGKRDPFESTNATSDDRMEVDSGDGTVWTANFDDIPMDTGSSTAPSAPVSNSTASVPESTGWSSPNASGDGETGWADFSSFTPVSPKDPLRCNSPVAMETSIETVDPLGVNAPMQQENTDQWLPNETTPTSPRGKTGDASDPEEEPVSDRITETVTNGSMKETVSLTVDAKTETAVFKRVLKSYREEEKQSTSEDASAKLFVAESGDAEKSNCPSSNCQKPGLKHLEKAKSPCEALNGPLEDAADMDEAKSEQCTANPEAAVNGPA", "length": 928 }, "evidence": [ { "id": "A0A9J7JKW5", "url": 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"OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5H9R7-1", "protein_name": "Serine/threonine-protein phosphatase 6 regulatory subunit 3", "gene_name": "PPP6R3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFWKFDLHSSSHIDTLLEREDVTLKELMDEEDVLQECKAQNRKLIEFLLKAECLEDLVSFIIEEPPQDMDEKIRYKYPNISCELLTSDVSQMNDRLGEDESLLMKLYSFLLNDSPLNPLLASFFSKVLSILISRKPEQIVDFLKKKHDFVDLIIKHIGTSAIMDLLLRLLTCIEPPQPRQDVLNWLNEEKIIQRLVEIVHPSQEEDRHSNASQSLCEIVRLSRDQMLQIQNSTEPDPLLATLEKQEIIEQLLSNIFHKEKNESAIVSAIQILLTLLETRRPTFEGHIEICPPGMSHSACSVNKSVLEAIRGRLGSFHELLLEPPKKSVMKTTWGVLDPPVGNTRLNVIRLISSLLQTNTSSINGDLMELNSIGVILNMFFKYTWNNFLHTQVEICIALILASPFENTENATITDQDSTGDNLLLKHLFQKCQLIERILEAWEMNEKKQAEGGRRHGYMGHLTRIANCIVHSTDKGPNSALVQQLIKDLPDEVRERWETFCTSSLGETNKRNTVDLVTTCHIHSSSDDEIDFKETGFSQDSSLQQAFSDYQMQQMTSNFIDQFGFNDEKFADQDDIGNVSFDRVSDINFTLNTNESGNIALFEACCKERIQQFDDGGSDEEDIWEEKHIAFTPESQRRSSSGSTDSEESTDSEEEDGAKQDLFEPSSANTEDKMEVDLSEPPNWSANFDVPMETTHGAPLDSVGSDVWSTEEPMPTKETGWASFSEFTSSLSTKDSLRSNSPVEMETSTEPMDPLTPSAAALAVQPEAAGSVAMEASSDGEEDAESTDKVTETVMNGGMKETLSLTVDAKTETAVFKSEEGKLSTSQDAACKDAEECPETAEAKCAAPRPPSSSPEQRTGQPSAPGDTSVNGPV", "length": 873 }, "evidence": [ { "id": "A0A9J7JKW5", "url": "https://omabrowser.org/oma/group/A0A9J7JKW5/", "database": 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"MFWKFDLHSSSHIDTLLEREDVTLKELMDEEDVLQECKAQNRKLIEFLLKAECLEDLVSFIIEEPPQDMDEKIRYKYPNISCELLTSDVSQMNDRLGEDESLLMKLYSFLLNESPLNPLLASFFSKVLSILISRKPEQIVDFLKKKRDFVDLIIKHIGTSAIMDLLLRLLTCIEPPQPRQDVLNWLNEERIIQRLVEIVHPSQEEDRHSNASQSLCEIVRLSRDQMLQVQNSTEPDPLLATLEKQEIIEQLLSNIFHKEKNESAIVSAIQILLTLLETRRPTFEGHIEICPPGMSHSACSVNKSVLEAIRGRLGSFHELLLEPPKKSVMKTTWGILDPPVGNTRLNVIRLISSLLQTNTSSINGDLMELNSIGVILDMFFKYTWNNFLHTQVEICIALILASPFENAENGTITDQDSTGDNLLLKHLFQKCQLIERILEAWDTNEKKQAEGGRRHGYMGHLTRIANCIVHSTDKGPNSALVQQLIKDLPDEVRERWETFCTNSLGETNKRNTVDLAFSDYQMQQMTSNFIDQFGFNDEKFADQDDIGNVSFDRVSDINFTLNTNESGNIALFEACCKERIQQFDDGGSDEEDIWEEKHIAFTPESQRRSSSGSTDSEESTDSEEEDGAKQDLFESSSANTEDKMEVDLNEPPTWSANFDVPMETTHGAPLDSVGSDVWSTEEPMPTKETGWASFSEFTSSLSTKESLRSNSPVEMETSTESVDPLTPGAAALATQPEAPGSMAMEASSDGEEDAESTDKVTETVMNGGMKETLSLTVDAKTETAVFKSEEEKLSTSQDAACKDAEETPEPAEAKCTAPLTPSSSPEQRTDQPSMPSDPSVNGPV", "length": 844 }, "evidence": [ { "id": "A0A9J7JKW5", "url": "https://omabrowser.org/oma/group/A0A9J7JKW5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKW5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKW5" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKW5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKW5" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKW5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKW5" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKW5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKW5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protein phosphatase regulator activity", "id": "GO:0019888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019888", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKW5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKW5" } ], "pmid": "" }, { "name": "protein phosphatase binding", "id": "GO:0019903", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019903", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKW5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKW5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 112, "end_pos": 114, "annotation": "n_glycosylation_sequon" }, { "start_pos": 210, "end_pos": 212, "annotation": "n_glycosylation_sequon" }, { "start_pos": 231, "end_pos": 233, "annotation": "n_glycosylation_sequon" }, { "start_pos": 261, "end_pos": 263, "annotation": "n_glycosylation_sequon" 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"o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 112, "end_pos": 114 }, { "start_pos": 210, "end_pos": 212 }, { "start_pos": 231, "end_pos": 233 }, { "start_pos": 261, "end_pos": 263 }, { "start_pos": 302, "end_pos": 304 }, { "start_pos": 358, "end_pos": 360 }, { "start_pos": 409, "end_pos": 411 }, { "start_pos": 577, "end_pos": 579 }, { "start_pos": 587, "end_pos": 589 }, { "start_pos": 593, "end_pos": 595 }, { "start_pos": 79, "end_pos": 81 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", 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:: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614874.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007649206", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007649206" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKZ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKZ7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Kctd21", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKZ7", "locus": {} } ], "crossref": [ { "id": "cd18395", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18395", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100765855", "url": "https://www.ncbi.nlm.nih.gov/gene/100765855", "database": "GeneID", "categories": [ "Genome 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"categories": [ "Protein Classification" ] }, { "id": "PTHR14499", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14499", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14499:SF57", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14499:SF57", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02214", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02214", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF19329", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19329", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007649206", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007649206", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JKZ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKZ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JKZ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKZ7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3I5C8", "url": "https://www.uniprot.org/uniprotkb/G3I5C8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3I5C8-1", "url": "https://www.uniprot.org/uniprotkb/G3I5C8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPELFPDTQPPAMSDPITLNVGGKLYTTSLATLTSFPDSMLGAMFSGKMPTKRDSQGNCFIDRDGKVFRYILNFLRTSHLDLPEDFQEMGLLRREADFYQVQPLIEALQEKEIELSKAEKNAMLNITLKQRVQTVHFTVREAPQIYSLSSSSMEVFNANIFSTSCLFLKLLGSKLFYCSNGNLSSITSHLQDPNHLTLDWVANVEGLPEEEYTKQNLKRLWVVPANKQINSFQVFVEEVLKIALSDGFCIDSSHPHALDFMNNKIIRLIRYR", "length": 272, "header": "tr|A0A9J7JKZ7-1|A0A9J7JKZ7_CRIGR Isoform 1 of BTB/POZ domain-containing protein KCTD21 isoform X1 OS=Cricetulus griseus OX=10029 GN=Kctd21 PE=4 SV=1 CANONICAL=A0A9J7JKZ7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JKZ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKZ7/entry", "sequence": { "sequence": "MPELFPDTQPPAMSDPITLNVGGKLYTTSLATLTSFPDSMLGAMFSGKMPTKRDSQGNCFIDRDGKVFRYILNFLRTSHLDLPEDFQEMGLLRREADFYQVQPLIEALQEKEIELSKAEKNAMLNITLKQRVQTVHFTVREAPQIYSLSSSSMEVFNANIFSTSCLFLKLLGSKLFYCSNGNLSSITSHLQDPNHLTLDWVANVEGLPEEEYTKQNLKRLWVVPANKQINSFQVFVEEVLKIALSDGFCIDSSHPHALDFMNNKIIRLIRYR", "length": 272, "header": "tr|A0A9J7JKZ7-1|A0A9J7JKZ7_CRIGR Isoform 1 of BTB/POZ domain-containing protein KCTD21 isoform X1 OS=Cricetulus griseus OX=10029 GN=Kctd21 PE=4 SV=1 CANONICAL=A0A9J7JKZ7-1" }, "locus": {} }, { "isoform_ac": "G3I5C8-1", "url": "https://www.uniprot.org/uniprotkb/G3I5C8/entry", "sequence": { "sequence": "MSDPITLNVGGKLYTTSLATLTSFPDSMLGAMFSGKMPTKRDSQGNCFIDRDGKVFRYILNFLRTSHLDLPEDFQEMGLLRREADFYQVQPLIEALQEKEIELSKAEKNAMLNITLKQRVQTVHFTVREAPQIYSLSSSSMEVFNANIFSTSCLFLKLLGSKLFYCSNGNLSSITSHLQDPNHLTLDWVANVEGLPEEEYTKQNLKRLWVVPANKQINSFQVFVEEVLKIALSDGFCIDSSHPHALDFMNNKIIRLIRYR", "length": 260, "header": "tr|G3I5C8-1|A0A9J7JKZ7_CRIGR Computationally mapped isoform of BTB/POZ domain-containing protein KCTD21 isoform X1 OS=Cricetulus griseus OX=10029 GN=Kctd21 PE=4 SV=1 CANONICAL=A0A9J7JKZ7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3I5C8", "url": "https://www.uniprot.org/uniprotkb/G3I5C8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3I5C8", "url": "https://www.uniprot.org/uniprotkb/G3I5C8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100765855", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765855", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0X454-1", "protein_name": "Potassium channel tetramerization domain containing 21", "gene_name": "KCTD21", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSEPITLNVGGKLYTTSLSTLTSFPDSMLGAMFSGKMPTKKDSQGNCFIDRDGKIFRYILNFLRTSHLDLPEDFQEMGLLRREADFYQIQPLIEALQEKEVELSKAEKNAMLNISLDQKTQTVHFTVREAPQIYSLSSSNMEVFSAHIFSTSCLFLKLLGSKLYYCFNGNLSSISSYLQDPNHLTLDWVASVEGLPEEEYTKQNLKRLWVVPDNKQINSFQVFVEEMLKIAVSDGFCIDSSHPHTSDFMNNKIIRLIRYK", "length": 260 }, "evidence": [ { "id": "A0A9J7JKZ7", "url": "https://omabrowser.org/oma/group/A0A9J7JKZ7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0AAA9T364-1", "protein_name": "Potassium channel tetramerization domain containing 21", "gene_name": "KCTD21", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSDPITLNVGGKLYTTSLATLTSFPDSMLGAMFSGKMPTKRDSQGNCFIDRDGKVFRYILNFLRTSHLDLPEDFQEMGLLRREADFYQVQPLIEALQEKEVELSKAEKNAMLNITLNQRVQTVHFTVREAPQIYSLSSSSMEVFNANIFSTSCLFLKLLGSKLFYCSNGNLSSITSHLQDPNHLTLDWVANVEGLPEEEYTKQNLKRLWVVPANKQINSFQVFVEEVLKIALSDGFCIDSSHPHAVDFMNNKIIRLIRYR", "length": 260 }, "evidence": [ { "id": "A0A9J7JKZ7", "url": "https://omabrowser.org/oma/group/A0A9J7JKZ7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D4ADH5-1", "protein_name": "Potassium channel tetramerization domain containing 21", "gene_name": "Kctd21", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSDPITLNVGGKLYTTSLATLTSFPDSMLGAMFSGKMPTKRDSQGNCFIDRDGKVFRYILNFLRTSHLDLPEDFQEMGLLRREADFYQVQPLIEALQEKEIELSKAEKNAMLNITLKQHVQTVHFTVREAPQIYSLSSSSMEVFNANIFSTSCLFLKLLGSKLFYCSNGNLSSITSHLQDPNHLTLDWVANVEGLPEEEYTKQNLKRLWVVPANKQINSFQAFVEEVLKIALSDGFCIDSSHPHALDFMNNKIIRLIRYR", "length": 260 }, "evidence": [ { "id": "A0A9J7JKZ7", "url": "https://omabrowser.org/oma/group/A0A9J7JKZ7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q4G0X4-1", "protein_name": "BTB/POZ domain-containing protein KCTD21", "gene_name": "KCTD21", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSDPITLNVGGKLYTTSLATLTSFPDSMLGAMFSGKMPTKRDSQGNCFIDRDGKVFRYILNFLRTSHLDLPEDFQEMGLLRREADFYQVQPLIEALQEKEVELSKAEKNAMLNITLNQRVQTVHFTVREAPQIYSLSSSSMEVFNANIFSTSCLFLKLLGSKLFYCSNGNLSSITSHLQDPNHLTLDWVANVEGLPEEEYTKQNLKRLWVVPANKQINSFQVFVEEVLKIALSDGFCIDSSHPHALDFMNNKIIRLIRYR", "length": 260 }, "evidence": [ { "id": "A0A9J7JKZ7", "url": "https://omabrowser.org/oma/group/A0A9J7JKZ7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKZ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKZ7" } ], "pmid": "" }, { "name": "histone deacetylase binding", "id": "GO:0042826", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042826", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKZ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKZ7" } ], "pmid": "" }, { "name": "cullin family protein binding", "id": "GO:0097602", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097602", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKZ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKZ7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "protein homooligomerization", "id": "GO:0051260", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051260", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKZ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKZ7" } ], "pmid": "" }, { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKZ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKZ7" } ], "pmid": "" }, { "name": "ubiquitin-dependent protein catabolic process", "id": "GO:0006511", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006511", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKZ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKZ7" } ], "pmid": "" }, { "name": "negative regulation of smoothened signaling pathway", "id": "GO:0045879", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045879", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKZ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKZ7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 125, "end_pos": 127, "annotation": "n_glycosylation_sequon" }, { "start_pos": 182, "end_pos": 184, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JKZ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKZ7" }, { "id": "PS50097", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50097" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BTB", "eco_id": "ECO_0000259", "start_pos": 15, "end_pos": 84, "start_aa": "Asp", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 125, "end_pos": 127 }, { "start_pos": 182, "end_pos": 184 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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"sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JMF5-1", "uniprot_ac": "A0A9J7JMF5", "uniprot_id": "A0A9J7JMF5_CRIGR", "mass": { "chemical_mass": 62317.0, "monoisotopic_mass": 62317.0 }, "refseq": { "ac": "XP_007652781", "name": "general transcription factor 3C polypeptide 5 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652781" }, "gene_names": [ { "name": "Gtf3c5", "type": "recommended", "evidence": [ { "id": "A0A9J7JMF5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMF5" } ] }, { "name": "Gtf3c5", "type": "synonym", "evidence": [ { "id": "XP_007652781", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652781" } ] } ], "protein_names": [ { "name": "General transcription factor 3C polypeptide 5 isoform X5", "type": "synonym", "evidence": [ { "id": "A0A9J7JMF5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMF5/entry#names_and_taxonomy" } ] }, { "name": "general transcription factor 3C polypeptide 5 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007652781", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652781" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003616640.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 27, 2016 this sequence version replaced XP_007652781.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007652781", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652781" } ] }, { "annotation": "Involved in RNA polymerase III-mediated transcription. Integral, tightly associated component of the DNA-binding TFIIIC2 subcomplex that directly binds tRNA and virus-associated RNA promoters.", "evidence": [ { "database": "UniProtKB", "id": "G3IIM7", "url": "https://www.uniprot.org/uniprotkb/G3IIM7#function" }, { "database": "UniProtKB", "id": "ARBA00057927", "url": "https://www.uniprot.org/uniprotkb/ARBA00057927#function" }, { "database": "UniProtKB", "id": "A0A9J7G851", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G851#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JMF5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMF5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Gtf3c5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMF5", "locus": {} } ], "crossref": [ { "id": "A0A9J7JMF5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JMF5", "database": "AlphaFoldDB", "categories": [] }, { "id": "100770779", "url": "https://www.ncbi.nlm.nih.gov/gene/100770779", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019136", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019136", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040454", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040454", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041499", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041499", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042536", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042536", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100770779", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770779", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PPEYFVR", "url": "https://omabrowser.org/oma/group/PPEYFVR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G851", "url": "https://www.orthodb.org/?gene=A0A9J7G851", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JMF5", "url": "https://www.orthodb.org/?gene=A0A9J7JMF5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JW43", "url": "https://www.orthodb.org/?gene=A0A9J7JW43", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3IIM7", "url": "https://www.orthodb.org/?gene=G3IIM7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13230", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13230", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13230:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13230:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09734", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09734", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17682", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17682", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007652781", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652781", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G851", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G851", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G851-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G851-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JMF5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMF5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JMF5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMF5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JW43", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JW43", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JW43-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JW43-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3IIM7", "url": "https://www.uniprot.org/uniprotkb/G3IIM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3IIM7-1", "url": "https://www.uniprot.org/uniprotkb/G3IIM7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAVEPDAEPKAAIPVDLRRERRLVCVEYPGVVRNEDKMLQTLGGEEGVSRVRSWENSGTAGKEPGERAVSLIYTDPTKRLELYFRPKDPYCHPVCANRFSTSSMLLRIRKRTRRQRGALGAETHPQVTFDLEILGIISTIYKFQGMSDFQYLAVHTEAGGKHVSMYDRVLMRKPEKEEFFHQELPLYIPPPIFSRLDTPVDYFYRPETQHREGYHNPSISGENLIGLSRARRPHNAIFVNFEDPEVPLQPLEAAVTTWKKACTNPIDQKVEEELRKLFDVRPIWSRNAVKSNVSVHPDKLKILLPYMAYYMITGPWRSLWIRFGYDPRKHPDAKIYQVLDFRIRCGMKYGYGSRDMPVKAKRSTYNYSLPITVKKTSNQLVTMHDLKQGLGPSGTDGPRKLTYNKYKLKDSVYIFREGALPPYRQMFYQLCDLNVEELQKIVHRNDGTESVCTERDGWCLPKTTDHLRDTMSLMILQTIRSERPALFSDTGKTDRGKGQLMFESGEEGEEEEEEEDEEDFKPSDGSENEMETEILDYV", "length": 539, "header": "tr|A0A9J7JMF5-1|A0A9J7JMF5_CRIGR Isoform 1 of General transcription factor 3C polypeptide 5 isoform X5 OS=Cricetulus griseus OX=10029 GN=Gtf3c5 PE=4 SV=1 CANONICAL=A0A9J7JMF5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G851-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G851/entry", "sequence": { "sequence": "MAAVEPDAEPKAAIPVDLRRERRLVCVEYPGVVRNEDKMLQTLGGEEGVSRIYTDPTKRLELYFRPKDPYCHPVCANRFSTSSMLLRIRKRTRRQRGALGAETHPQVTFDLEILGIISTIYKFQGMSDFQYLAVHTEAGGKHVSMYDRVLMRKPEKEEFFHQELPLYIPPPIFSRLDTPVDYFYRPETQHREGYHNPSISGENLIGLSRARRPHNAIFVNFEDPEVPLQPLEAAVTTWKKACTNPIDQKVEEELRKLFDVRPIWSRNAVKSNVSVHPDKLKILLPYMAYYMITGPWRSLWIRFGYDPRKHPDAKIYQVLDFRIRCGMKYGYGSRDMPVKAKRSTYNYSLPITVKKTSNQLVTMHDLKQGLGPSGTDGPRKLTYNKYKLKDSVYIFREGALPPYRQMFYQLCDLNVEELQKIVHRNDGTESVCTERDGWCLPKTTDHLRDTMSLMILQTIRSERPGKTDRGKGQLMFESGEEGEEEEEEEDEEDFKPSDGSENEMETEILDYV", "length": 512, "header": "tr|A0A9J7G851-1|A0A9J7JMF5_CRIGR Computationally mapped isoform of General transcription factor 3C polypeptide 5 isoform X5 OS=Cricetulus griseus OX=10029 GN=Gtf3c5 PE=4 SV=1 CANONICAL=A0A9J7JMF5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JMF5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMF5/entry", "sequence": { "sequence": "MAAVEPDAEPKAAIPVDLRRERRLVCVEYPGVVRNEDKMLQTLGGEEGVSRVRSWENSGTAGKEPGERAVSLIYTDPTKRLELYFRPKDPYCHPVCANRFSTSSMLLRIRKRTRRQRGALGAETHPQVTFDLEILGIISTIYKFQGMSDFQYLAVHTEAGGKHVSMYDRVLMRKPEKEEFFHQELPLYIPPPIFSRLDTPVDYFYRPETQHREGYHNPSISGENLIGLSRARRPHNAIFVNFEDPEVPLQPLEAAVTTWKKACTNPIDQKVEEELRKLFDVRPIWSRNAVKSNVSVHPDKLKILLPYMAYYMITGPWRSLWIRFGYDPRKHPDAKIYQVLDFRIRCGMKYGYGSRDMPVKAKRSTYNYSLPITVKKTSNQLVTMHDLKQGLGPSGTDGPRKLTYNKYKLKDSVYIFREGALPPYRQMFYQLCDLNVEELQKIVHRNDGTESVCTERDGWCLPKTTDHLRDTMSLMILQTIRSERPALFSDTGKTDRGKGQLMFESGEEGEEEEEEEDEEDFKPSDGSENEMETEILDYV", "length": 539, "header": "tr|A0A9J7JMF5-1|A0A9J7JMF5_CRIGR Isoform 1 of General transcription factor 3C polypeptide 5 isoform X5 OS=Cricetulus griseus OX=10029 GN=Gtf3c5 PE=4 SV=1 CANONICAL=A0A9J7JMF5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JW43-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JW43/entry", "sequence": { "sequence": "MAAVEPDAEPKAAIPVDLRRERRLVCVEYPGVVRNEDKMLQTLGGEEGVSRVRSWENSGTAGKEPGERAVSLIYTDPTKRLELYFRPKDPYCHPVCANRFSTSSMLLRIRKRTRRQRGALGAETHPQVTFDLEILGIISTIYKFQGMSDFQYLAVHTEAGGKHVSMYDRVLMRKPEKEEFFHQELPLYIPPPIFSRLDTPVDYFYRPETQHREGYHNPSISGENLIGLSRARRPHNAIFVNFEDPEVPLQPLEAAVTTWKKACTNPIDQKVEEELRKLFDVRPIWSRNAVKSNVSVHPDKLKILLPYMAYYMITGPWRSLWIRFGYDPRKHPDAKIYQVLDFRIRCGMKYGYGSRDMPVKAKRSTYNYSLPITVKKTSNQLVTMHDLKQGLGPSGTDGPRKLTYNKYKLKDSVYIFREGALPPYRQMFYQLCDLNVEELQKIVHRNDGTESVCTERDGWCLPKTTDHLRDTMSLMILQTIRSERPGKTDRGKGQLMFESGEEGEEEEEEEDEEDFKPSDGSENEMETEILDYV", "length": 533, "header": "tr|A0A9J7JW43-1|A0A9J7JW43_CRIGR Computationally mapped isoform of General transcription factor 3C polypeptide 5 isoform X6 OS=Cricetulus griseus OX=10029 GN=Gtf3c5 PE=4 SV=1 CANONICAL=A0A9J7JMF5-1" }, "locus": {} }, { "isoform_ac": "G3IIM7-1", "url": "https://www.uniprot.org/uniprotkb/G3IIM7/entry", "sequence": { "sequence": "MAAVEPDAEPKAAIPVDLRRERRLVCVEYPGVVRNEDKMLQTLGGEEGVSRIYTDPTKRLELYFRPKDPYCHPVCANRFSTSSMLLRIRKRTRRQRGALGAETHPQVTFDLEILGIISTIYKFQGMSDFQYLAVHTEAGGKHVSMYDRVLMRKPEKEEFFHQELPLYIPPPIFSRLDTPVDYFYRPETQHREGYHNPSISGENLIGLSRARRPHNAIFVNFEDPEVPLQPLEAAVTTWKKACTNPIDQKVEEELRKLFDVRPIWSRNAVKSNVSVHPDKLKILLPYMAYYMITGPWRSLWIRFGYDPRKHPDAKIYQVLDFRIRCGMKYGYGSRDMPVKAKRSTYNYSLPITVKKTSNQLVTMHDLKQGLGPSGTDGPRKLTYNKYKLKDSVYIFREGALPPYRQMFYQLCDLNVEELQKIVHRNDGTESVCTERDGWCLPKTTDHLRDTMSLMILQTIRSERPALFSDTGKTDRGKGQLMFESGEEGEEEEEEEDEEDFKPSDGSENEMETEILDYV", "length": 518, "header": "tr|G3IIM7-1|A0A9J7JMF5_CRIGR Computationally mapped isoform of General transcription factor 3C polypeptide 5 isoform X5 OS=Cricetulus griseus OX=10029 GN=Gtf3c5 PE=4 SV=1 CANONICAL=A0A9J7JMF5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3IIM7", "url": "https://www.uniprot.org/uniprotkb/G3IIM7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3IIM7", "url": "https://www.uniprot.org/uniprotkb/G3IIM7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100770779", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770779", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1AFN2-1", "protein_name": "General transcription factor 3C polypeptide 5", "gene_name": "GTF3C5", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAADGPRTERGSGVLELPSTPRLVCVEYPGLVRDVSAMLRTLGGEEGVSRIYADPGKRLELYFRPKDPYCHPVCANRFPASAMLLRVKRRSRRKRLGEQDVQFEMEIMGIVTTVYKFQGMSDFQYLAMHSGPDGKQTSMYDKVLMLKPEKEEFFNRELPLYIPPPIFSRLDTPVDYYYRPDVQHREGYNNPQVSAENLIGLSRARRPNNAIFVNFDDEVPTKPLDAAAQAWKKVCTNPVDRKVEEELRKLFEVRPVWSRNAVKANISVHPDKLKLLLPCLAYYMITGPWRSLWVRFGYDPRKHPEAKIYQVLDFRIRCGMKYGYTPNDMPVKAKRSTYNYSLPITVKKPVSHTVSVHDLKQGLGTPGASGAKKPASSRYKLKESVYIFREGALPPYRQMFYQLCDLNVESLQKIIHRNDGTESECTERDGWCLPKTSDDLRDSMSLMIKQIIRSTRPALFSSTTSSEDGKEQLAYESGEDEDDEEEEEEEFKPSDGSENEMETEILDYV", "length": 509 }, "evidence": [ { "id": "A0A9J7JMF5", "url": "https://omabrowser.org/oma/group/A0A9J7JMF5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E7EZ29-1", "protein_name": "General transcription factor 3C polypeptide 5", "gene_name": "gtf3c5", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MHKRQTKMDSVITSEAVSSDTEARNTGESRDEAVVLGNTATLALSDTNLVCVEYPAVVNNVNRMLDSIGGEQGVSKTYADSTKRIELRFRPGDPFCHPAYGNRYSSTNLLLRVRRRTRKGNNAETQISMEIVGLIGTTYKFQGMADFQYLASHNNPEGNQVSLYDKIILRKPEKKEFYDNPVPLFIPPPIFSRLDMPVDYFYRPDVMHNKDTAFQSALMKDHIIAPNRARRPNNAIFVNFDDKTIPSEPLEAAVTTWRKLCVHPNDLKAEKKIKQLFEKRPIWSRNAVKANIDIHPEKMKHLLPFVAYYALTGPWRSLWVRFGYDPRKIPGAKIYQVLDFRIRYGMKHGFGVNDMPVKSKRSAYHYSRPTTFNRAVPLPASVTDIPQESTSSSGPVTAKYMLKESIYIFREGMLPPYRQMFYQLCDLDVEKIQNLIHKNDGKEEVCDERDGWCVPHTADELRNIISGMIQQYVKANRPGPSTQKPVKRRAKDVGSGEEDDEDEDDDDDEEYKPSDGSDNEMETEIADYM", "length": 529 }, "evidence": [ { "id": "A0A9J7JMF5", "url": "https://omabrowser.org/oma/group/A0A9J7JMF5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8R2T8-1", "protein_name": "General transcription factor 3C polypeptide 5", "gene_name": "Gtf3c5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAEPDADPKAAIPVDLRRERRLVCVEYPGVVRNEAKMLQTLGGEESVSRIYTDPTKRLELYFRPKDPYCHPVCANRFSTSSLLLRIRKRTRRRRGVLGDEAHPQVTFNLEIIGIISTIYKFQGMSDFQYLAVHTEAGGKHVSMYDRVLMRKPEKEEFFHQELPLYIPPPIFSRLDTPVDYFYRPETQHREGYHNPTISGENLIGLSRARRPHNAIFVNFEDTEVPEQPLEAAVQTWKKACTNPIDQKVEEELRKLFDIRPVWSRNAVKSNVSVHPDKLKILLPYMAYYMITGPWRSLWIRFGYDPRKHPDAKIYQVLDFRIRCGMKYGYGSRDMPVKAKRSTYNYSLPITVKKTSNQPGTMHDLKQGLGPSGTDGPRKLTYNKYKLKDSVYIFREGALPPYRQMFYQLCDLNVEELQKIVHRNDGTETVCTERDGWCLPKTTDHLRDTMSLMILQTIRSERPALFSNTGKADRGKEQLMFESGEEEEEEEEEEEEEEEDFKPSDGSENEMETEILDYV", "length": 520 }, "evidence": [ { "id": "A0A9J7JMF5", "url": "https://omabrowser.org/oma/group/A0A9J7JMF5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VIZ2-1", "protein_name": "Lethal (2) 37Cd", "gene_name": "l(2)37Cd", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSRQLSFNPQKEYELIEYPGRVVNPDRMIATLGGIINVSKVLGDEVKRLALHFHPENPYNKPTFGDCTDKTGVLLSITVRRHKKDKQRPPEYFVRVLGHCSRSFTFETLCDFQYLPLWSTPKSDNANAAQELTYALDQLKPKNTTDLDYFKRRHSQLLALPELFTHVDTVYAGTYRIDPSEDGQHEVLGVQSKSSYDNQGVVSFNMVDSFPTQADSQNLKRLKVKYVSDEQLALVKKLFDDCPIWTRIALQYESGLTNDKLKCITPSLAFYFSNGPWRTLYVRFGYDPRKDFNSRYYQTFDFRLRFSTGLSEFVYAKKFVKQRRAANAPFAPIEDRVSDLVQDIDYPYFDEHKLPRSRQCMLRYCDVRMTRIQEMLEKIPTPLTGAVCNERTGWLPPGFDAQVRQIVCASISELLRNHYRKENLTAEVEAVTQADEEDEDEAEDEETQEEDMELDETQAMGNSEQFVDNDIEQLFDNITS", "length": 480 }, "evidence": [ { "id": "A0A9J7JMF5", "url": "https://omabrowser.org/oma/group/A0A9J7JMF5/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9Y5Q8-1", "protein_name": "General transcription factor 3C polypeptide 5", "gene_name": "GTF3C5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAEAADLGLGAAVPVELRRERRMVCVEYPGVVRDVAKMLPTLGGEEGVSRIYADPTKRLELYFRPKDPYCHPVCANRFSTSSLLLRIRKRTRRQKGVLGTEAHSEVTFDMEILGIISTIYKFQGMSDFQYLAVHTEAGGKHTSMYDKVLMLRPEKEAFFHQELPLYIPPPIFSRLDAPVDYFYRPETQHREGYNNPPISGENLIGLSRARRPHNAIFVNFEDEEVPKQPLEAAAQTWRRVCTNPVDRKVEEELRKLFDIRPIWSRNAVKANISVHPDKLKVLLPFIAYYMITGPWRSLWIRFGYDPRKNPDAKIYQVLDFRIRCGMKHGYAPSDLPVKAKRSTYNYSLPITVKKTSSQLVTMHDLKQGLGPSGTSGARKPASSKYKLKDSVYIFREGALPPYRQMFYQLCDLNVEELQKIIHRNDGAENSCTERDGWCLPKTSDELRDTMSLMIRQTIRSKRPALFSSSAKADGGKEQLTYESGEDEEDEEEEEEEEEDFKPSDGSENEMETEILDYV", "length": 519 }, "evidence": [ { "id": "A0A9J7JMF5", "url": "https://omabrowser.org/oma/group/A0A9J7JMF5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "transcription factor TFIIIC complex", "id": "GO:0000127", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000127", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JMF5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMF5" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JMF5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMF5" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JMF5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMF5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "RNA polymerase III type 1 promoter sequence-specific DNA binding", "id": "GO:0001002", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001002", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JMF5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMF5" } ], "pmid": "" }, { "name": "RNA polymerase III type 2 promoter sequence-specific DNA binding", "id": "GO:0001003", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001003", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JMF5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMF5" } ], "pmid": "" }, { "name": "RNA polymerase III general transcription initiation factor activity", "id": "GO:0000995", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000995", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JMF5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMF5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "transcription initiation at RNA polymerase III promoter", "id": "GO:0006384", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006384", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JMF5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMF5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 293, "end_pos": 295, "annotation": "n_glycosylation_sequon" }, { "start_pos": 367, "end_pos": 369, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JMF5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMF5" }, { "id": "PF09734", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09734" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Transcription factor IIIC subunit 5 HTH", "eco_id": "ECO_0000259", "start_pos": 189, "end_pos": 343, "start_aa": "Ile", "end_aa": "Arg", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7JMF5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMF5" }, { "id": "PF17682", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17682" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Transcription factor IIIC subunit Tfc1/Sfc1 triple barrel", "eco_id": "ECO_0000259", "start_pos": 25, "end_pos": 153, "start_aa": "Val", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 293, "end_pos": 295 }, { "start_pos": 367, "end_pos": 369 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JQM9-1", "uniprot_ac": "A0A9J7JQM9", "uniprot_id": "A0A9J7JQM9_CRIGR", "mass": { "chemical_mass": 83801.0, "monoisotopic_mass": 83801.0 }, "refseq": { "ac": "XP_007645611", "name": "olfactomedin-like protein 2B isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007645611" }, "gene_names": [ { "name": "Olfml2b", "type": "recommended", "evidence": [ { "id": "A0A9J7JQM9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQM9" } ] }, { "name": "Olfml2b", "type": "synonym", "evidence": [ { "id": "XP_007645611", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007645611" } ] } ], "protein_names": [ { "name": "Olfactomedin-like protein 2B isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7JQM9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQM9/entry#names_and_taxonomy" } ] }, { "name": "olfactomedin-like protein 2B isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007645611", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007645611" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614301.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007645611", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007645611" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JQM9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQM9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Olfml2b", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQM9", "locus": {} } ], "crossref": [ { "id": "A0A9J7JQM9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JQM9", "database": "AlphaFoldDB", "categories": [] }, { "id": "100772466", "url": "https://www.ncbi.nlm.nih.gov/gene/100772466", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003112", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003112", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050605", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050605", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772466", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772466", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GHCFVIC", "url": "https://omabrowser.org/oma/group/GHCFVIC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JQM9", "url": "https://www.orthodb.org/?gene=A0A9J7JQM9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3HU02", "url": "https://www.orthodb.org/?gene=G3HU02", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23192", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23192", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23192:SF37", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23192:SF37", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02191", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02191", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007645611", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007645611", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JQM9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQM9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JQM9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQM9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HU02", "url": "https://www.uniprot.org/uniprotkb/G3HU02", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HU02-1", "url": "https://www.uniprot.org/uniprotkb/G3HU02-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASPLKLVLCFALVVARVWGTSIPPTGTSEPPDVQTVAPTEEDDTLQNEADNQENVLSQLLGDYDKVKAVSEGSDCQCKCVVRPLGRDACQRINSGASRKEDVYTVETITSGSSCKCACVAPPSAVNPCEGDFRLQKLREADSRDLKLSTIIDMLEGAFYGLDLLKLHSVTTKLVGRVDKLEEEVSKNLTKENEQIKEDVQEIRTEMSKRGKENCSDTILDSMPDIRSALQRDAAAAYAHPEEQYEERFLQEETVSQQINSIELLRTQPLVPPAAMKPQQPLQRRVYLRGRVASKPTVIRGITYYKAKISEEENDIEEQHDELFSGDNGVDLLIEDQLLRHEDLLTSATRRPATTRHGAAVTTDASVQAISLSSAQASTSTASIVGPDSQASTGQLLATTQSTTEFPEPTGAMPSTQVPPTTVAHTAIQPPPASVAPAIVPEDIFVEAPHLVPVLPDTAGTDMPEEEGTAGQEATSAGPILSPEEEDDIRNVIGRCKDTLSTITGPTTQNTYGRNEGAWMKDPLAKDDRIYVTNYYYGNTLVEFRNLENFKQGRWSNSYKLPYSWIGTGHVVYNGAFYYNRAFTRNIIKYDLKQRYVAAWAMLHDVAYEEATPWRWQGHSDVDFAVDENGLWLIYPALDDEGFSQEVIVLSKLNAVDLSTQKETTWRTGLRRNFYGNCFVICGVLYAVDSYNQRNANISYAFDTHTNTQIVPRLLFENEYSYTTQIDYNPKDRLLYAWDNGHQVTYHVIFAY", "length": 752, "header": "tr|A0A9J7JQM9-1|A0A9J7JQM9_CRIGR Isoform 1 of Olfactomedin-like protein 2B isoform X1 OS=Cricetulus griseus OX=10029 GN=Olfml2b PE=4 SV=1 CANONICAL=A0A9J7JQM9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JQM9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQM9/entry", "sequence": { "sequence": "MASPLKLVLCFALVVARVWGTSIPPTGTSEPPDVQTVAPTEEDDTLQNEADNQENVLSQLLGDYDKVKAVSEGSDCQCKCVVRPLGRDACQRINSGASRKEDVYTVETITSGSSCKCACVAPPSAVNPCEGDFRLQKLREADSRDLKLSTIIDMLEGAFYGLDLLKLHSVTTKLVGRVDKLEEEVSKNLTKENEQIKEDVQEIRTEMSKRGKENCSDTILDSMPDIRSALQRDAAAAYAHPEEQYEERFLQEETVSQQINSIELLRTQPLVPPAAMKPQQPLQRRVYLRGRVASKPTVIRGITYYKAKISEEENDIEEQHDELFSGDNGVDLLIEDQLLRHEDLLTSATRRPATTRHGAAVTTDASVQAISLSSAQASTSTASIVGPDSQASTGQLLATTQSTTEFPEPTGAMPSTQVPPTTVAHTAIQPPPASVAPAIVPEDIFVEAPHLVPVLPDTAGTDMPEEEGTAGQEATSAGPILSPEEEDDIRNVIGRCKDTLSTITGPTTQNTYGRNEGAWMKDPLAKDDRIYVTNYYYGNTLVEFRNLENFKQGRWSNSYKLPYSWIGTGHVVYNGAFYYNRAFTRNIIKYDLKQRYVAAWAMLHDVAYEEATPWRWQGHSDVDFAVDENGLWLIYPALDDEGFSQEVIVLSKLNAVDLSTQKETTWRTGLRRNFYGNCFVICGVLYAVDSYNQRNANISYAFDTHTNTQIVPRLLFENEYSYTTQIDYNPKDRLLYAWDNGHQVTYHVIFAY", "length": 752, "header": "tr|A0A9J7JQM9-1|A0A9J7JQM9_CRIGR Isoform 1 of Olfactomedin-like protein 2B isoform X1 OS=Cricetulus griseus OX=10029 GN=Olfml2b PE=4 SV=1 CANONICAL=A0A9J7JQM9-1" }, "locus": {} }, { "isoform_ac": "G3HU02-1", "url": "https://www.uniprot.org/uniprotkb/G3HU02/entry", "sequence": { "sequence": "MASPLKLVLCFALVVARVWGTSIPPTGTSEPPDVQTVAPTEEDDTLQNEADNQENVLSQLLGDYDKVKAVSEGSDCQCKCVVRPLGRDACQRINSGASRKEDVYTVETITSGSSCKCACVAPPSAVNPCEGDFRLQKLREADSRDLKLSTIIDMLEGAFYGLDLLKLHSVTTKLVGRVDKLEEEVSKNLTKENEQIKEDVQEIRTEMSKRGKENCSDTILDSMPDIRSALQRDAAAAYAHPEYEERFLQEETVSQQINSIELLRTQPLVPPAAMKPQQPLQRRVYLRGRVASKPTVIRGITYYKAKISEEENDIEEQHDELFSGDNGVDLLIEDQLLRHEDLLTSATRRPATTRHGAAVTTDASVQAISLSSAQASTSTASIVGPDSQASTGQLLATTQSTTEFPEPTGAMPSTQVPPTTVAHTAIQPPPASVAPAIVPEDIFVEAPHLVPVLPDTAGTDMPEEEGTAGQEATSAGPILSPEEEDDIRNVIGRCKDTLSTITGPTTQNTYGRNEGAWMKDPLAKDDRIYVTNYYYGNTLVEFRNLENFKQGRWSNSYKLPYSWIGTGHVVYNGAFYYNRAFTRNIIKYDLKQRYVAAWAMLHDVAYEEATPWRWQGHSDVDFAVDENGLWLIYPALDDEGFSQEVIVLSKLNAVDLSTQKETTWRTGLRRNFYGNCFVICGVLYAVDSYNQRNANISYAFDTHTNTQIVPRLLFENEYSYTTQIDYNPKDRLLYAWDNGHQVTYHVIFAY", "length": 750, "header": "tr|G3HU02-1|A0A9J7JQM9_CRIGR Computationally mapped isoform of Olfactomedin-like protein 2B isoform X1 OS=Cricetulus griseus OX=10029 GN=Olfml2b PE=4 SV=1 CANONICAL=A0A9J7JQM9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HU02", "url": "https://www.uniprot.org/uniprotkb/G3HU02" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HU02", "url": "https://www.uniprot.org/uniprotkb/G3HU02" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100772466", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772466", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A6QLD2-1", "protein_name": "Olfactomedin-like protein 2B", "gene_name": "OLFML2B", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAKSLLLVLCFALVTTLGWGYSAPPTGTTEPPDVQTVAPTEDETLQNEADNQENVLSQLLGDYDKVKAVSEGSDCQCKCVVRPLGRDACQRVNAGTSRKEDFYTVETITSGPSCKCACVAPPSALNPCEGDFRLQKLREADSRDLKLSTIIDMLEGAFYGLDLLKLHSVTTKLVGRVDKLEEEISKNLTKENEQIREDVEEIRTEMNKRGKENCSNNILDSIPDIRSALQRDAAAAYTHPEYEERFLQEETVSQQIKSIKLLQTRPLAPPEVVKPQRPLQRQVHLRGRPASRPTVIRGITYYKAKDPEEENDIEEHQDEFFSGEHGMDLLIEDQLLRHNQLLTSATRRPAATGRSAAVTADAGTTSAGTPTTALPSARLPASTAAPSTPDPAVSASVEQFSTPLPTTSVSPDPTEEAVPTPFTQVPATTVAHTATQQPPASAPPSAAPEDAFVEATHTAPVPPPPVRTDSPGKDSTARQGTVPPGPTLSPEEEDDIRNVIGRCKDTLSTITGPITQNTYGRNEGAWMKDPLAKDERIYVTNYYYGNTLVEFRNLENFKQGRWSNSYKLPYSWIGTGHVVYNGAFYYNRAFTRNIIKYDLKQRYVAAWAMLHDVAYEEATPWRWQGHSDVDFAVDENGLWLIYPALDDEGFSQEVIVLSKLNAVDLSTQKETTWRTGLRRNLYGNCFVICGVLYAVDSHNQRNANISYAFDTHTNTQIVPRLLFENEYSYTTQIDYNPKDRLLYAWDNGHQVTYHVIFAY", "length": 759 }, "evidence": [ { "id": "A0A9J7JQM9", "url": "https://omabrowser.org/oma/group/A0A9J7JQM9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D4A0J7-1", "protein_name": "Olfactomedin-like 2B", "gene_name": "Olfml2b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAYPLPLVLCFALVVARVWGSSTPPTGTSEPPDVQTVAPTEDDVLQNEADNQENVLSQLLGDYDKVKAVSEGSDCQCKCVVRPLGRDACQRINEGASRKEDFYTVETITSGSSCKCACVAPPSAVNPCEGDFRLQKLREADSRDLKLSTIIDMLEGAFYGLDLLKLHSVTTKLVGRVDKLEEEVSKNLTKENEQIKEDVEEIRTELNKRGKENCSDNILGNMPDIRSALQRDAAAAYAHPEEQYEERFLQEETVSQQINSIELLRTQPLAPPTVMKPRQPSQRQVHLRGRLASKPTVIRGITYYKAKVSEEENDIEDQHDELFSGDSGVDLLIEDQLLRQEDLLMSATRRPATTRHAAAVSTDASVQATALSSEPAQASASAPSLVDPASQAPDRQLLASPQTTTVSPETMGVMPSTQVSPTTVAHTAIQPPPAMIPGDIFVEALHLVPMSPDTVGTDMAEEEGTARQEATSASPILSPEEEDDIRNVIGRCKDTLSTITGPTTQNTYGRNEGAWMKDPLAKDDRIYVTNYYYGNTLVEFRNLENFKQGRWSNSYKLPYSWIGTGHVVYNGAFYYNRAFTRNIIKYDLKQRYVAAWAMLHDVAYEETTPWRWQGHSDVDFAVDENGLWLIYPALDDEGFSQEVIVLSKLNAVDLSTQKETTWRTGLRRNFYGNCFVICGVLYAVDSYNQRNANISYAFDTHTNTQIVPRLLFENEYSYTTQIDYNPKDRLLYAWDNGHQVTYHVIFAY", "length": 748 }, "evidence": [ { "id": "A0A9J7JQM9", "url": "https://omabrowser.org/oma/group/A0A9J7JQM9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5RH76-1", "protein_name": "Olfactomedin-like 2Ba precursor", "gene_name": "olfml2ba", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTEMKIWCVLLMAFALTSAAPKSHLRLEEKTKDNNDTLQVEIDNQEHILSQLLGDYDKVKALSEGSDCGCKCVVRPLSASACQRIREGHATPQDFYTVETITSGPHCKCACIAPPSALNPCEGDFRLKKLRQAGKDNIKLSTILELLEGSFYGMDLLKLHSVTTKILDRMDTIEKMVLNNQTEEKLNTISTSPNPQLSTSSPTTLPSVIQEKRTSLREQNDEAAAFQHMEYYSVLKCTQQSKYEEKFVGDILNSGSDLNKATTALQEQEQQGRKKQPKITVRGITYYRSDPVDEMDSEKNLDDNLSGDSPIDLFADEQLLRHKARHFRPVIKAWSVRPKTKSEISKGGDAPKKHQNPLMGLLDSTALPIKTPTEPITVQTQTSHSTTDSSTGDERTTTTPAAMDNLKVTKSSIKRMEANKVEPPTPSVQQAQNMLVRSSNLGHIKTNESVAAAVKVEATEPTMTNQTNGTAVKETSASSVTQTGALIKEHLKASTQSTLNTLTPSPTSHSNALTVTESSVGINAHKGEVTTIVMTASVTGSKTDSVTDLTQLSPRVRETLTTTRTTTKTATTSQPVKRKYSISWDEEEEAVVPEQVEEEKAVKPVVEDKVGEEPQRKPGMCKDTLATISEPITHNTYGRNEGAWMKDPLDQDDKIYVTNYYYGNNLLEFRNIDVFKQGRFTNSYKLPYNWIGTGHVVYKGAFYYNRAFSRDIIKFDLRLRYVAAWTMLHDAVFENDDVSSWRWRGNSDMDLAIDESGLWVIYPALDDEGFLQEVIVLSRLNPTDLSMKRETTWRTGLRRNRYGNCFIVCGVLYATDSYNQQDTNLSYAFDTHTNTQVIPHLPFSNNYTYVTQIDYNPKERVLYAWDNGHQVTYNVQFAYVDPL", "length": 883 }, "evidence": [ { "id": "A0A9J7JQM9", "url": "https://omabrowser.org/oma/group/A0A9J7JQM9/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q68BL8-1", "protein_name": "Olfactomedin-like protein 2B", "gene_name": "OLFML2B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAKPRLLVLYFALIVVPAWVSSIVLTGTSEPPDAQTVAPAEDETLQNEADNQENVLSQLLGDYDKVKAMSEGSDCQCKCVVRPLGRDACQRINAGASRKEDFYTVETITSGSSCKCACVAPPSALNPCEGDFRLQKLREADSQDLKLSTIIDMLEGAFYGLDLLKLHSVTTKLVGRVDKLEEEVSKNLTKENEQIKEDMEEIRTEMNKRGKENCSENILDSMPDIRSALQRDAAAAYAHPEYEERFLQEETVSQQINSIELLQTRPLALPEVVKSQRPLQRQVHLRGRPASQPTVIRGITYYKAKVSEEENDIEEQQDEFFSGDNGVDLLIEDQLLRHNGLMTSVTRRPAATRQGHSTAVTSDLNARTAPWSSALPQPSTSDPSIANHASVGPTLQTTSVSPDPTRESVLQPSPQVPATTVAHTATQQPAAPAPPAVSPREALMEAMHTVPVPPTTVRTDSLGKDAPAGWGTTPASPTLSPEEEDDIRNVIGRCKDTLSTITGPTTQNTYGRNEGAWMKDPLAKDERIYVTNYYYGNTLVEFRNLENFKQGRWSNSYKLPYSWIGTGHVVYNGAFYYNRAFTRNIIKYDLKQRYVAAWAMLHDVAYEEATPWRWQGHSDVDFAVDENGLWLIYPALDDEGFSQEVIVLSKLNAADLSTQKETTWRTGLRRNFYGNCFVICGVLYAVDSYNQRNANISYAFDTHTNTQIVPRLLFENEYSYTTQIDYNPKDRLLYAWDNGHQVTYHVIFAY", "length": 750 }, "evidence": [ { "id": "A0A9J7JQM9", "url": "https://omabrowser.org/oma/group/A0A9J7JQM9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JQM9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQM9" } ], "pmid": "" }, { "name": "extracellular matrix", "id": "GO:0031012", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031012", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JQM9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQM9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JQM9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQM9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JQM9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQM9" } ], "pmid": "" }, { "name": "extracellular matrix binding", "id": "GO:0050840", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050840", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JQM9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQM9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 188, "end_pos": 190, "annotation": "n_glycosylation_sequon" }, { "start_pos": 214, "end_pos": 216, "annotation": "n_glycosylation_sequon" }, { "start_pos": 697, "end_pos": 699, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JQM9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQM9" }, { "id": "PS51132", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51132" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Olfactomedin-like", "eco_id": "ECO_0000259", "start_pos": 495, "end_pos": 752, "start_aa": "Arg", "end_aa": "Tyr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 188, "end_pos": 190 }, { "start_pos": 214, "end_pos": 216 }, { "start_pos": 697, "end_pos": 699 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JQY6-1", "uniprot_ac": "A0A9J7JQY6", "uniprot_id": "A0A9J7JQY6_CRIGR", "mass": { "chemical_mass": 67918.0, "monoisotopic_mass": 67918.0 }, "refseq": { "ac": "XP_027271596", "name": "syntaxin-binding protein 2 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271596" }, "gene_names": [ { "name": "Stxbp2", "type": "recommended", "evidence": [ { "id": "A0A9J7JQY6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQY6" } ] }, { "name": "Stxbp2", "type": "synonym", "evidence": [ { "id": "XP_027271596", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271596" } ] } ], "protein_names": [ { "name": "Syntaxin-binding protein 2 isoform X3", "type": "synonym", "evidence": [ { "id": "A0A9J7JQY6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQY6/entry#names_and_taxonomy" } ] }, { "name": "syntaxin-binding protein 2 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_027271596", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271596" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027271596", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271596" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JQY6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQY6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Stxbp2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQY6", "locus": {} } ], "crossref": [ { "id": "A0A9J7JQY6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JQY6", "database": "AlphaFoldDB", "categories": [] }, { "id": "100768736", "url": "https://www.ncbi.nlm.nih.gov/gene/100768736", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001619", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001619", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027482", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027482", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036045", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036045", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043127", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043127", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043154", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043154", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768736", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768736", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A061I754", "url": "https://www.orthodb.org/?gene=A0A061I754", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JQY6", "url": "https://www.orthodb.org/?gene=A0A9J7JQY6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3HWW8", "url": "https://www.orthodb.org/?gene=G3HWW8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11679", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11679", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00995", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00995", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027271596", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271596", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A061I754", "url": "https://www.uniprot.org/uniprotkb/A0A061I754", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A061I754-1", "url": "https://www.uniprot.org/uniprotkb/A0A061I754-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JQY6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQY6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JQY6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQY6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HWW8", "url": "https://www.uniprot.org/uniprotkb/G3HWW8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HWW8-1", "url": "https://www.uniprot.org/uniprotkb/G3HWW8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPSGLKAVVGEKILSGVIRSVKKDGEWKVLIMDHPSMRILSSCCKMSDILAEGITIVEDINKRREPIPSLEAIYLLSPTEKGLIPTVICTPTPQSVQALIADFRGTPTFTYKAAHVFFTDTCPEPLFSELGRSRLAKVVKTLKEIHLAFLPYEAQVFSLDAPHSTYNLYCPFRAGERTRQLDALAQQIATLCATLQEYPSIRYRKGPEDTAQLAHAVLAKLNAFKADTPSLGEGPEKTRSQLLIMDRAADPVSPLLHELTFQAMAYDLLDIEQDTYRYETTGLSESREKAVLLDEDDDLWVELRHMHIADVSKKVTELLKTFCESKRLTTDKANIKDLSHILKKMPQYQKELNKYSTHLHLADDCMKRFKGSVEKLCGVEQDLAMGSDAEGEKIKDAMKLIVPVLLDASVPPYDKIRVLLLYILLRNGVSEENLAKLIQHANVQAYSSLIRNLEQLGGTVTNSAGSATFSRLERRERMEPTYQLSRWTPIIKDVMEDVVEDRLDRKLWPFVSDPAPVPSSQAAVSARFGHWHKNKAGIEARAGPRLIVYIVGGVAMSEMRAAYEVTRATEGKWEVLIGSSHILTPTRFLDDLKTLDQKLEDMALP", "length": 606, "header": "tr|A0A9J7JQY6-1|A0A9J7JQY6_CRIGR Isoform 1 of Syntaxin-binding protein 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Stxbp2 PE=3 SV=1 CANONICAL=A0A9J7JQY6-1" }, "isoforms": [ { "isoform_ac": "A0A061I754-1", "url": "https://www.uniprot.org/uniprotkb/A0A061I754/entry", "sequence": { "sequence": "MAPSGLKAVVGEKILSGVIRSVKKDGEWKVLIMDHPSMRILSSCCKMSDILAEGITIVEDINKRREPIPSLEAIYLLSPTEKSVQALIADFRGTPTFTYKAAHVFFTDTCPEPLFSELGRSRLAKVVKTLKEIHLAFLPYEAQVFSLDAPHSTYNLYCPFRAGERTRQLDALAQQIATLCATLQEYPSIRYRKGPEDTAQLAHAVLAKLNAFKADTPSLGEGPEKTRSQLLIMDRAADPVSPLLHELTFQAMAYDLLDIEQDTYRYETTGLSESREKAVLLDEDDDLWVELRHMHIADVSKKVTELLKTFCESKRLTTDKANIKDLSHILKKMPQYQKELNKYSTHLHLADDCMKRFKGSVEKLCGVEQDLAMGSDAEGEKIKDAMKLIVPVLLDASVPPYDKIRVLLLYILLRNGVSEENLAKLIQHANVQAYSSLIRNLEQLGGTVTNSAGSATFSRLERRERMEPTYQLSRWTPIIKDVMEDVVEDRLDRKLWPFVSDPAPVPSSQAAVSARFGHWHKNKAGIEARAGPRLIVYIVGGVAMSEMRAAYEVTRATEGKWEVLIGSSHILTPTRFLDDLKTLDQKLEDMALP", "length": 593, "header": "tr|A0A061I754-1|A0A061I754_CRIGR Computationally mapped isoform of Syntaxin-binding protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Stxbp2 PE=3 SV=1 CANONICAL=A0A9J7JQY6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JQY6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQY6/entry", "sequence": { "sequence": "MAPSGLKAVVGEKILSGVIRSVKKDGEWKVLIMDHPSMRILSSCCKMSDILAEGITIVEDINKRREPIPSLEAIYLLSPTEKGLIPTVICTPTPQSVQALIADFRGTPTFTYKAAHVFFTDTCPEPLFSELGRSRLAKVVKTLKEIHLAFLPYEAQVFSLDAPHSTYNLYCPFRAGERTRQLDALAQQIATLCATLQEYPSIRYRKGPEDTAQLAHAVLAKLNAFKADTPSLGEGPEKTRSQLLIMDRAADPVSPLLHELTFQAMAYDLLDIEQDTYRYETTGLSESREKAVLLDEDDDLWVELRHMHIADVSKKVTELLKTFCESKRLTTDKANIKDLSHILKKMPQYQKELNKYSTHLHLADDCMKRFKGSVEKLCGVEQDLAMGSDAEGEKIKDAMKLIVPVLLDASVPPYDKIRVLLLYILLRNGVSEENLAKLIQHANVQAYSSLIRNLEQLGGTVTNSAGSATFSRLERRERMEPTYQLSRWTPIIKDVMEDVVEDRLDRKLWPFVSDPAPVPSSQAAVSARFGHWHKNKAGIEARAGPRLIVYIVGGVAMSEMRAAYEVTRATEGKWEVLIGSSHILTPTRFLDDLKTLDQKLEDMALP", "length": 606, "header": "tr|A0A9J7JQY6-1|A0A9J7JQY6_CRIGR Isoform 1 of Syntaxin-binding protein 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Stxbp2 PE=3 SV=1 CANONICAL=A0A9J7JQY6-1" }, "locus": {} }, { "isoform_ac": "G3HWW8-1", "url": "https://www.uniprot.org/uniprotkb/G3HWW8/entry", "sequence": { "sequence": "MAPSGLKAVVGEKILSGVIRSVKKDGEWKVLIMDHPSMRILSSCCKMSDILAEGITIVEDINKRREPIPSLEAIYLLSPTEKSVQALIADFRGTPTFTYKAAHVFFTDTCPEPLFSELGRSRLAKVVKTLKEIHLAFLPYEAQVFSLDAPHSTYNLYCPFRAGERTRQLDALAQQIATLCATLQEYPSIRYRKGPEDTAQLAHAVLAKLNAFKADTPSLGEGPEKTRSQLLIMDRAADPVSPLLHELTFQAMAYDLLDIEQDTYRYETTGLSESREKAVLLDEDDDLWVELRHMHIADVSKKVTELLKTFCESKRLTTDKANIKDLSHILKKMPQYQKELNKYSTHLHLADDCMKRFKGSVEKLCGVEQDLAMGSDAEGEKIKDAMKLIVPVLLDASVPPYDKIRVLLLYILLRNGVSEENLAKLIQHANVQAYSSLIRNLEQLGGTVTNSAGSATFSRLERRERMEPTYQLSRWTPIIKDVMEDVVEDRLDRKLWPFVSDPAPVPSSQAAVSSARFGHWHKNKAGIEARAGPRLIVYIVGGVAMSEMRAAYEVTRATEGKWEVLIGSSHILTPTRFLDDLKTLDQKLEDMALP", "length": 594, "header": "tr|G3HWW8-1|A0A9J7JQY6_CRIGR Computationally mapped isoform of Syntaxin-binding protein 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Stxbp2 PE=3 SV=1 CANONICAL=A0A9J7JQY6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HWW8", "url": "https://www.uniprot.org/uniprotkb/G3HWW8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HWW8", "url": "https://www.uniprot.org/uniprotkb/G3HWW8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100768736", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768736", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JQY6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQY6" } ], "pmid": "" }, { "name": "vesicle-mediated transport", "id": "GO:0016192", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016192", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JQY6", 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"MESTLEECSSRLRPVSVEMDSSSFIQFDVPEHSSTVLSQLNELRLQGKLCDIIVHIQGQPFRAHKAVLAASSPYFRDHSALSTMSGLSISVIKNPSVFEQLLSFCYTGRMSLQLKDVVSFLTAASFLQMQCVIDKCTQILESIHSKISVGDVDSVTIGAEENPESQNGVKDGSFFASPVEISPPYCSQVRQPPVSSDLRMETTPNKALRSRLQEEGHSDRGSSGSVSEYEIQIEGDHEQGDLLVRESQITEVKVKMEKSDRPSCSDSSSLGDDGYHTEMVDGEQVVAVNVGAYGSVLQHTYPYFQAASQPSSGPEAFGGQSNSSPSRSMLSCFRGRGARQKRAMSVHLHSDLQGVVQGSDSEAMMNNPSYESSPRERSARGYWYPYNERLICIYCGKSFNQKGSLDRHMRLHMGITPFVCKFCGKKYTRKDQLEYHIRGHTDDKPFRCEVCGKCFPFQGTLNQHLRKNHPGVTEVRNRMESPERTDVYVEQKLERDVSASEMALDSRMEIHTVSDAPD", "length": 518, "header": "tr|A0A9J7JV42-1|A0A9J7JV42_CRIGR Isoform 1 of Zinc finger and BTB domain-containing protein 34 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100764833 PE=4 SV=1 CANONICAL=A0A9J7JV42-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JV42-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JV42/entry", "sequence": { "sequence": 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"title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JJT2-1", "uniprot_ac": "A0A9J7JJT2", "uniprot_id": "A0A9J7JJT2_CRIGR", "mass": { "chemical_mass": 186840.0, "monoisotopic_mass": 186840.0 }, "refseq": { "ac": "XP_007615271", "name": "ligand-dependent corepressor isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007615271" }, "gene_names": [ { "name": "Lcor", "type": "recommended", "evidence": [ { "id": "A0A9J7JJT2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJT2" } ] }, { "name": "Lcor", "type": "synonym", "evidence": [ { "id": "XP_007615271", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007615271" } ] } ], "protein_names": [ { "name": "Ligand-dependent corepressor isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7JJT2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJT2/entry#names_and_taxonomy" } ] }, { "name": "ligand-dependent corepressor isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007615271", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007615271" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613664.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007615271", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007615271" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JJT2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJT2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Lcor", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJT2", "locus": {} } ], "crossref": [ { "id": "100756611", "url": "https://www.ncbi.nlm.nih.gov/gene/100756611", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007889", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007889", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028104", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028104", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100756611", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756611", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FQT3", "url": "https://www.orthodb.org/?gene=A0A9J7FQT3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JJT2", "url": "https://www.orthodb.org/?gene=A0A9J7JJT2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3GZV5", "url": "https://www.orthodb.org/?gene=G3GZV5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14931", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14931", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14931:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14931:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21545", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21545", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21545:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21545:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05225", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05225", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15090", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15090", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007615271", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007615271", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FQT3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQT3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQT3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQT3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GVJ2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GVJ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GVJ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GVJ2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GWQ6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GWQ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GWQ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GWQ6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JJT2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJT2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JJT2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJT2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3GZV5", "url": "https://www.uniprot.org/uniprotkb/G3GZV5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3GZV5-1", "url": "https://www.uniprot.org/uniprotkb/G3GZV5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFLGIRSSSAEPGRFCPSAWAPGPLLPDGVSLEGIMQILLSGVHSAAISCGFENILEGLFGPALLKDLNLFKECEPESISDWAFDENCLFCCLRRDKVKGHLVGLDEPASGAGQEALLKQEHAKVTRLQRQAEEFLNAVFYRKDSPWVSDPNIPLVAREIMQRMIQQFAAEYTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVRKSQSEPSEQDGVLDLSTKKSPCASSTSLSHSSGCSSTQGNGEDSAEASAVDSNHPSKPPLEKFMVKLCTHHQKQFIRVLSDLYTESQPGTGDLQPLDSTVMDVSTCSEACAQLSSGQNEQDDVCQDDVCLDGTSPSSVNLFLDSSGSPSSLSVTEQTVKESPPETDSVDGKENALTIVQKESSGLGDTQPNSRRSADSPTVGCLSALDSSSFNSLHSSKSLEGQTTGQEQDTSLKSCEDGEGHAPASVKSLTAVEEAAESTEEGGSCIVSQRNSFKALSEETWDSGFMGNSSSSADKENALQCSSKASLHQDLETDEQDARPKQENHLHPLGRNKVGYQTYPSDKGHFDHSKGEWLASSPTPAVHRASNGHSRTKMMSAIKTARKSKRASGLRINDYDNQCDVVYISQPITECHFENQRSILSSRKTARKSTRGYFFNGDCCELPTVRTLARNLRSQEKGSCSPIAPEAVVTSKQTLTVPTSKHTVGMQLPTVGVQLPTVGVQVVEEDTSDNPKEERPSLEEGGEDMSSAKEPQEPEVCLTVNEQDPSSSPRSGETTASSPACLLPASLPNEDMPDVSEGSVVVSPPTASVLSLLEQDQPPASLLASEEMHTLQECHLTPTAGSTPLISGEDSEDLLCRLPSSPETVIGEERSPGSENGGPAVDFDPPLSLELSEHDQSISTEAEIGDVPGETLLLEAALPLLESSIAGDENPRETEGGEAASGTGQLETHESDTEFSSENALSEANFDTAEENVDKKKKGRKLPEASDRCLRSQLVDSPSADSCPGSQGLDSSTACPEVKASKNPPTVKRSKREGHTGGATPEGSVIDSVHTDDLEDTENLTVGEHSSDDDIKQEGEGAGVITRQTLKSMLAKEVKREEGETPLSSDPDTVGQPLPGENLGIDVWSRIDERDAHAPSETIPCKRDPEQVKEKPGHIATQDVETAVSEADVGDAHSKDDAGLAPSSLASVSASQSGDAAGPSKLVTRSKRWPSSTYNLRHAHCVDALDTTKVTSEKQVPQGNTTPKENEASESVEPSDEDDADTVVGEQPKFMGWCAEEENQELIANFNAQYLKVQKGWIQLEKEAQPTARARSKSDKLKEIWKSKKRSRKCRGSLEVQKFSPVQMLFMTNFKLSNICKWFLETTETRSLVIVKKLNTRLPGDVPLVKHPLQKYPPSTLFPSSLQAERLKKHLKKFPGAIPARNNWKTQKLWAKLRENHGQVEPEAGSDISLGPNSEDSAEEVREGRNSHPPTNLPTPASTRILRKYSNIRGKLRAQRLENSLGGVSEIKQGRKSVCINPLMSPKLALQVGADGFPVNPKKAEGNKGRRGKQMPETLLRAEGQNKRKRAEGCGTQDDKDKGPATKASRVLSAKKLAAKDRVSQLSKKMTLKENKVRICKKAPRKSCPPSRKEKENTNKRPSHPAAASEALTKPGKQRATGEASSRPPKARRKSRKLSSGRGRARPLTKSPENRAAQRKRKLKAKLDSSQGKRRRLDAK", "length": 1728, "header": "tr|A0A9J7JJT2-1|A0A9J7JJT2_CRIGR Isoform 1 of Ligand-dependent corepressor isoform X1 OS=Cricetulus griseus OX=10029 GN=Lcor PE=4 SV=1 CANONICAL=A0A9J7JJT2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FQT3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQT3/entry", "sequence": { "sequence": "MVKLCTHHQKQFIRVLSDLYTESQPGTGDLQPLDSTVMDVSTCSEACAQLSSGQNEQDDVCQDDVCLDGTSPSSVNLFLDSSGSPSSLSVTEQTVKESPPETDSVDGKENALTIVQKESSGLGDTQPNSRRSADSPTVGCLSALDSSSFNSLHSSKSLEGQTTGQEQDTSLKSCEDGEGHAPASVKSLTAVEEAAESTEEGGSCIVSQRNSFKALSEETWDSGFMGNSSSSADKENALQCSSKASLHQDLETDEQDARPKQENHLHPLGRNKVGYQTYPSDKGHFDHSKGEWLASSPTPAVHRASNGHSRTKMMSAIKTARKSKRASGLRINDYDNQCDVVYISQPITECHFENQRSILSSRKTARKSTRGYFFNGDCCELPTVRTLARNLRSQEKGSCSPIAPEAVVTSKQTLTVPTSKHTVGMQLPTVGVQLPTVGVQVVEEDTSDNPKEERPSLEEGGEDMSSAKEPQEPEVCLTVNEQDPSSSPRSGETTASSPACLLPASLPNEDMPDVSEGSVVVSPPTASVLSLLEQDQPPASLLASEEMHTLQECHLTPTAGSTPLISGEDSEDLLCRLPSSPETVIGEERSPGSENGGPAVDFDPPLSLELSEHDQSISTEAEIGDVPGETLLLEAALPLLESSIAGDENPRETEGGEAASGTGQLETHESDTEFSSENALSEANFDTAEENVDKKKKGRKLPEASDRCLRSQLVDSPSADSCPGSQGLDSSTACPEVKASKNPPTVKRSKREGHTGGATPEGSVIDSVHTDDLEDTENLTVGEHSSDDDIKQEGEGAGVITRQTLKSMLAKEVKREEGETPLSSDPDTVGQPLPGENLGIDVWSRIDERDAHAPSETIPCKRDPEQVKEKPGHIATQDVETAVSEADVGDAHSKDDAGLAPSSLASVSASQSGDAAGPSKLVTRSKRWPSSTYNLRHAHCVDALDTTKVTSEKQVPQGNTTPKENEASESVEPSDEDDADTVVGEQPKFMGWCAEEENQELIANFNAQYLKVQKGWIQLEKEAQPTARARSKSDKLKEIWKSKKRSRKCRGSLEVQKFSPVQMLFMTNFKLSNICKWFLETTETRSLVIVKKLNTRLPGDVPLVKHPLQKYPPSTLFPSSLQAERLKKHLKKFPGAIPARNNWKTQKLWAKLRENHGQVEPEAGSDISLGPNSEDSAEEVREGRNSHPPTNLPTPASTRILRKYSNIRGKLRAQRLENSLGGVSEIKQGRKSVCINPLMSPKLALQVGADGFPVNPKKAEGNKGRRGKQMPETLLRAEGQNKRKRAEGCGTQDDKDKGPATKASRVLSAKKLAAKDRVSQLSKKMTLKENKVRICKKAPRKSCPPSRKEKENTNKRPSHPAAASEALTKPGKQRATGEASSRPPKARRKSRKLSSGRGRARPLTKSPENRAAQRKRKLKAKLDSSQGKRRRLDAK", "length": 1435, "header": "tr|A0A9J7FQT3-1|A0A9J7JJT2_CRIGR Computationally mapped isoform of Ligand-dependent corepressor isoform X1 OS=Cricetulus griseus OX=10029 GN=Lcor PE=4 SV=1 CANONICAL=A0A9J7JJT2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GVJ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GVJ2/entry", "sequence": { "sequence": "MFLGIRSSSAEPGRFCPSAWAPGPLLPDGVSLEGIMQILLSGVHSAAISCGFENILEGLFGPALLKDLNLFKECEPESISDWAFDENCLFCCLRRDKVKGHLVGLDEPASGAGQEALLKQEHAKVTRLQRQAEEFLNAVFYRKDSPWVSDPNIPLVAREIMQRMIQQFAAEYTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVRKSQSEPSEQDGVLDLSTKKSPCASSTSLSHSSGCSSTQGNGRPGRPSQYRPDGLRSGDGVSPRSLQDGTREGFGHSTSLKVPLARSLQISEELLSRNQLSTAASLGPSGLQNHGQHLILSREASWAKPHYEFNLNRMKFRGNGALSNISDLPFLAENSAFPKTAHQTKQDGKRDMSHSSPVDLKIPQVRGMDLSWESRTGDQYSYSSLVMGSQTESALSKKLRAILPKQNRKSILDAGPDSWGSDAEQSTSGQPYPTSDQEGDPGSKQPRKKRGRYRQYNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKNPPKKKMKLMRSEGPDVSVKIELDPQGEAAQSANESKTE", "length": 593, "header": "tr|A0A9J7GVJ2-1|A0A9J7GVJ2_CRIGR Computationally mapped isoform of Ligand-dependent corepressor isoform X5 OS=Cricetulus griseus OX=10029 GN=Lcor PE=4 SV=1 CANONICAL=A0A9J7JJT2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GWQ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GWQ6/entry", "sequence": { "sequence": "MFLGIRSSSAEPGRFCPSAWAPGPLLPDGVSLEGIMQILLSGVHSAAISCGFENILEGLFGPALLKDLNLFKECEPESISDWAFDENCLFCCLRRDKVKGHLVGLDEPASGAGQEALLKQEHAKVTRLQRQAEEFLNAVFYRKDGVLDLSTKKSPCASSTSLSHSSGCSSTQGNGEDSAEASAVDSNHPSKPPLEKFMVKLCTHHQKQFIRVLSDLYTESQPGTGDLQPLDSTVMDVSTCSEACAQLSSGQNEQDDVCQDDVCLDGTSPSSVNLFLDSSGSPSSLSVTEQTVKESPPETDSVDGKENALTIVQKESSGLGDTQPNSRRSADSPTVGCLSALDSSSFNSLHSSKSLEGQTTGQEQDTSLKSCEDGEGHAPASVKSLTAVEEAAESTEEGGSCIVSQRNSFKALSEETWDSGFMGNSSSSADKENALQCSSKASLHQDLETDEQDARPKQENHLHPLGRNKVGYQTYPSDKGHFDHSKGEWLASSPTPAVHRASNGHSRTKMMSAIKTARKSKRASGLRINDYDNQCDVVYISQPITECHFENQRSILSSRKTARKSTRGYFFNGDCCELPTVRTLARNLRSQEKGSCSPIAPEAVVTSKQTLTVPTSKHTVGMQLPTVGVQLPTVGVQVVEEDTSDNPKEERPSLEEGGEDMSSAKEPQEPEVCLTVNEQDPSSSPRSGETTASSPACLLPASLPNEDMPDVSEGSVVVSPPTASVLSLLEQDQPPASLLASEEMHTLQECHLTPTAGSTPLISGEDSEDLLCRLPSSPETVIGEERSPGSENGGPAVDFDPPLSLELSEHDQSISTEAEIGDVPGETLLLEAALPLLESSIAGDENPRETEGGEAASGTGQLETHESDTEFSSENALSEANFDTAEENVDKKKKGRKLPEASDRCLRSQLVDSPSADSCPGSQGLDSSTACPEVKASKNPPTVKRSKREGHTGGATPEGSVIDSVHTDDLEDTENLTVGEHSSDDDIKQEGEGAGVITRQTLKSMLAKEVKREEGETPLSSDPDTVGQPLPGENLGIDVWSRIDERDAHAPSETIPCKRDPEQVKEKPGHIATQDVETAVSEADVGDAHSKDDAGLAPSSLASVSASQSGDAAGPSKLVTRSKRWPSSTYNLRHAHCVDALDTTKVTSEKQVPQGNTTPKENEASESVEPSDEDDADTVVGEQPKFMGWCAEEENQELIANFNAQYLKVQKGWIQLEKEAQPTARARSKSDKLKEIWKSKKRSRKCRGSLEVQKFSPVQMLFMTNFKLSNICKWFLETTETRSLVIVKKLNTRLPGDVPLVKHPLQKYPPSTLFPSSLQAERLKKHLKKFPGAIPARNNWKTQKLWAKLRENHGQVEPEAGSDISLGPNSEDSAEEVREGRNSHPPTNLPTPASTRILRKYSNIRGKLRAQRLENSLGGVSEIKQGRKSVCINPLMSPKLALQVGADGFPVNPKKAEGNKGRRGKQMPETLLRAEGQNKRKRAEGCGTQDDKDKGPATKASRVLSAKKLAAKDRVSQLSKKMTLKENKVRICKKAPRKSCPPSRKEKENTNKRPSHPAAASEALTKPGKQRATGEASSRPPKARRKSRKLSSGRGRARPLTKSPENRAAQRKRKLKAKLDSSQGKRRRLDAK", "length": 1632, "header": "tr|A0A9J7GWQ6-1|A0A9J7GWQ6_CRIGR Computationally mapped isoform of Ligand-dependent corepressor isoform X2 OS=Cricetulus griseus OX=10029 GN=Lcor PE=4 SV=1 CANONICAL=A0A9J7JJT2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JJT2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJT2/entry", "sequence": { "sequence": "MFLGIRSSSAEPGRFCPSAWAPGPLLPDGVSLEGIMQILLSGVHSAAISCGFENILEGLFGPALLKDLNLFKECEPESISDWAFDENCLFCCLRRDKVKGHLVGLDEPASGAGQEALLKQEHAKVTRLQRQAEEFLNAVFYRKDSPWVSDPNIPLVAREIMQRMIQQFAAEYTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVRKSQSEPSEQDGVLDLSTKKSPCASSTSLSHSSGCSSTQGNGEDSAEASAVDSNHPSKPPLEKFMVKLCTHHQKQFIRVLSDLYTESQPGTGDLQPLDSTVMDVSTCSEACAQLSSGQNEQDDVCQDDVCLDGTSPSSVNLFLDSSGSPSSLSVTEQTVKESPPETDSVDGKENALTIVQKESSGLGDTQPNSRRSADSPTVGCLSALDSSSFNSLHSSKSLEGQTTGQEQDTSLKSCEDGEGHAPASVKSLTAVEEAAESTEEGGSCIVSQRNSFKALSEETWDSGFMGNSSSSADKENALQCSSKASLHQDLETDEQDARPKQENHLHPLGRNKVGYQTYPSDKGHFDHSKGEWLASSPTPAVHRASNGHSRTKMMSAIKTARKSKRASGLRINDYDNQCDVVYISQPITECHFENQRSILSSRKTARKSTRGYFFNGDCCELPTVRTLARNLRSQEKGSCSPIAPEAVVTSKQTLTVPTSKHTVGMQLPTVGVQLPTVGVQVVEEDTSDNPKEERPSLEEGGEDMSSAKEPQEPEVCLTVNEQDPSSSPRSGETTASSPACLLPASLPNEDMPDVSEGSVVVSPPTASVLSLLEQDQPPASLLASEEMHTLQECHLTPTAGSTPLISGEDSEDLLCRLPSSPETVIGEERSPGSENGGPAVDFDPPLSLELSEHDQSISTEAEIGDVPGETLLLEAALPLLESSIAGDENPRETEGGEAASGTGQLETHESDTEFSSENALSEANFDTAEENVDKKKKGRKLPEASDRCLRSQLVDSPSADSCPGSQGLDSSTACPEVKASKNPPTVKRSKREGHTGGATPEGSVIDSVHTDDLEDTENLTVGEHSSDDDIKQEGEGAGVITRQTLKSMLAKEVKREEGETPLSSDPDTVGQPLPGENLGIDVWSRIDERDAHAPSETIPCKRDPEQVKEKPGHIATQDVETAVSEADVGDAHSKDDAGLAPSSLASVSASQSGDAAGPSKLVTRSKRWPSSTYNLRHAHCVDALDTTKVTSEKQVPQGNTTPKENEASESVEPSDEDDADTVVGEQPKFMGWCAEEENQELIANFNAQYLKVQKGWIQLEKEAQPTARARSKSDKLKEIWKSKKRSRKCRGSLEVQKFSPVQMLFMTNFKLSNICKWFLETTETRSLVIVKKLNTRLPGDVPLVKHPLQKYPPSTLFPSSLQAERLKKHLKKFPGAIPARNNWKTQKLWAKLRENHGQVEPEAGSDISLGPNSEDSAEEVREGRNSHPPTNLPTPASTRILRKYSNIRGKLRAQRLENSLGGVSEIKQGRKSVCINPLMSPKLALQVGADGFPVNPKKAEGNKGRRGKQMPETLLRAEGQNKRKRAEGCGTQDDKDKGPATKASRVLSAKKLAAKDRVSQLSKKMTLKENKVRICKKAPRKSCPPSRKEKENTNKRPSHPAAASEALTKPGKQRATGEASSRPPKARRKSRKLSSGRGRARPLTKSPENRAAQRKRKLKAKLDSSQGKRRRLDAK", "length": 1728, "header": "tr|A0A9J7JJT2-1|A0A9J7JJT2_CRIGR Isoform 1 of Ligand-dependent corepressor isoform X1 OS=Cricetulus griseus OX=10029 GN=Lcor PE=4 SV=1 CANONICAL=A0A9J7JJT2-1" }, "locus": {} }, { "isoform_ac": "G3GZV5-1", "url": "https://www.uniprot.org/uniprotkb/G3GZV5/entry", "sequence": { "sequence": "MQRMIQQFAAEYTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVRKSQSEPSEQDGVLDLSTKKSPCASSTSLSHSSGCSSTQGNGEDSAEASAVDSNHPSKPPLEKFMVKLCTHHQKQFIRVLSDLYTESQPGTGDLQPLDSTVMDVSTCSEACAQLSSGQNEQDDVCQDDVCLDGTSPSSVNLFLDSSGSPSSLSVTEQTVKESPPETDSVDGKENALTIVQKESSGLGDTQPNSRRSADSPTVGCLSALDSSSFNSLHSSKSLEGQTTGQEQDTSLKSCEDGEGHAPASVKSLTAVEEAAESTEEGGSCIVSQRNSFKALSEETWDSGFMGNSSSSADKENALQCSSKASLHQDLETDEQDARPKQENHLHPLGRNKVGYQTYPSDKGHFDHSKGEWLASSPTPAVHRASNGHSRTKMMSAIKTARKSKRASGLRINDYDNQCDVVYISQPITECHFENQRSILSSRKTARKSTRGYFFNGDCCELPTVRTLARNLRSQEKGSCSPIAPEAVVTSKQTLTVPTSKHTVGMQLPTVGVQLPTVGVQVVEEDTSDNPKEERPSLEEGGEDMSSAKEPQEPEVCLTVNEQDPSSSPRSGETTASSPACLLPASLPNEDMPDVSEGSVVVSPPTASVLSLLEQDQPPASLLASEEMHTLQECHLTPTAGSTPLISGEDSEDLLCRLPSSPETVIGEERSPGSENGGPAVDFDPPLSLELSEHDQSISTEAEIGDVPGETLLLEAALPLLESSIAGDENPRETEGGEAASGTGQLETHESDTEFSSENALSEANFDTAEENVDKKKKGRKLPEASDRCLRSQLVDSPSADSCPGSQGLDSSTACPEVKASKNPPTVKRSKREGHTGGATPEGSVIDSVHTDDLEDTENLTVGEHSSDDDIKQEGEGAGVITRQTLKSMLAKEVKREEGETPLSSDPDTVGQPLPGENLGIDVWSRIDERDAHAPSETIPCKRDPEQVKEKPGHIATQDVETAVSEADVGDAHSKDDAGLAPSSLASVSASQSGDAAGPSKLVTRSKRWPSSTYNLRHAHCVDALDTTKVTSEKQVPQGNTTPKENEASESVEPSDEDDADTVVGEQPKFMGWCAEEENQELIANFNAQYLKVQKGWIQLEKEAQPTARARSKSDKLKEIWKSKKRSRKCRGSLEVQKFSPVQMLFMTNFKLSNICKWFLETTETRSLVIVKKLNTRLPGDVPLVKHPLQKYPPSTLFPSSLQAERLKKHLKKFPGAIPARNNWKTQKLWAKLRENHGQVEPEAGSDISLGPNSEDSAEEVREGRNSHPPTNLPTPASTRILRKYSNIRGKLRAQRLENSLGGVSEIKQGRKSVCINPLMSPKLALQVGADGFPVNPKKAEGNKGRRGKQMPETLLRAEGQNKRKRAEGCGTQDDKDKGPATKASRVLSAKKLAAKDRVSQLSKKMTLKENKVRICKKAPRKSCPPSRKEKENTNKRPSHPAAASEALTKPGKQRATGEASSRPPKARRKSRKLSSGRGRARPLTKSPENRAAQRKRKLKAKLDSSQGKRRRLDAK", "length": 1568, "header": "tr|G3GZV5-1|A0A9J7JJT2_CRIGR Computationally mapped isoform of Ligand-dependent corepressor isoform X1 OS=Cricetulus griseus OX=10029 GN=Lcor PE=4 SV=1 CANONICAL=A0A9J7JJT2-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1487, "start_aa": "Thr", "end_pos": 1487, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1487", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 591, "start_aa": "Thr", "end_pos": 591, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr591", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3GZV5", "url": "https://www.uniprot.org/uniprotkb/G3GZV5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3GZV5", "url": "https://www.uniprot.org/uniprotkb/G3GZV5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100756611", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756611", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JJT2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJT2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JJT2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJT2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JJT2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJT2" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JJT2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJT2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1071, "end_pos": 1073, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1252, "end_pos": 1254, "annotation": "n_glycosylation_sequon" }, { "start_pos": 176, "end_pos": 178, "annotation": "n_glycosylation_sequon" }, { "start_pos": 186, 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"sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JLR0-1", "uniprot_ac": "A0A9J7JLR0", "uniprot_id": "A0A9J7JLR0_CRIGR", "mass": { "chemical_mass": 42510.0, "monoisotopic_mass": 42510.0 }, "refseq": { "ac": "XP_007616458", "name": "GA-binding protein subunit beta-1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007616458" }, "gene_names": [ { "name": "Gabpb1", "type": "recommended", "evidence": [ { "id": "A0A9J7JLR0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLR0" } ] }, { "name": "Gabpb1", "type": "synonym", "evidence": [ { "id": "XP_007616458", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007616458" } ] } ], "protein_names": [ { "name": "GA-binding protein subunit beta-1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007616458", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007616458" }, { "id": "A0A9J7JLR0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLR0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 202 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613665.1) and transcript sequence (IACG01111097.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007616458", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007616458" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JLR0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLR0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Gabpb1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLR0", "locus": {} } ], "crossref": [ { "id": "100753587", "url": "https://www.ncbi.nlm.nih.gov/gene/100753587", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050663", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050663", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050776", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050776", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100753587", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753587", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PXEREAL", "url": "https://omabrowser.org/oma/group/PXEREAL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JLR0", "url": "https://www.orthodb.org/?gene=A0A9J7JLR0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24193", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24193", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24193:SF76", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24193:SF76", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24201", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24201", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24201:SF16", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24201:SF16", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007616458", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007616458", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G6F3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6F3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G6F3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6F3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G6M9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6M9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G6M9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6M9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JLR0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLR0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JLR0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLR0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JVB2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVB2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JVB2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVB2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3H050", "url": "https://www.uniprot.org/uniprotkb/G3H050", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3H050-1", "url": "https://www.uniprot.org/uniprotkb/G3H050-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSLVDLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHYSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHASIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQIAMQNQINTNPESPDTVTIHTATPQFIIGPGGVVNLTGLVSSENSSKATDETGVSAVQFGNSSTSVLATLAALAEASAPLSNSSETPVVATEEVVTAESVDGAIQQVVSSGGQQVITIVTDGIQLGNLHSIPTSGMGQPIIVTMPDGQQVLTVPATDIAEETVISEEPPAKRQCTEIMESRVESAEIEEREALQKQLDEANREAQKYRQQLLKKEQEAEAYRQKLEAMTRLQTNKEAV", "length": 395, "header": "tr|A0A9J7JLR0-1|A0A9J7JLR0_CRIGR Isoform 1 of GA-binding protein subunit beta-1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Gabpb1 PE=4 SV=1 CANONICAL=A0A9J7JLR0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G6F3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6F3/entry", "sequence": { "sequence": "MSLVDLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHYSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHASIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQIAMQNQINTNPESPDTVTIHTATPQFIIGPGGVVNLTGLVSSENSSKATDETGVSAVQFGNSSTSVLATLAALAEASAPLSNSSETPVVATEEVVTAESVDGAIQQVVSSGGQQVITIVTDGIQLGNLHSIPTSGMGQPIIVTMPDGQQVLTVPATDIAEETVISEEPPAKRQCTEIMESRVESAEIEVRSLLPGERSTSETAG", "length": 361, "header": "tr|A0A9J7G6F3-1|A0A9J7JLR0_CRIGR Computationally mapped isoform of GA-binding protein subunit beta-1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Gabpb1 PE=4 SV=1 CANONICAL=A0A9J7JLR0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G6M9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6M9/entry", "sequence": { "sequence": "MSLVDLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHYSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHASIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQIAMQNQINTNPESPDTVTIHTATPQFIIGPGGVVNLTDETGVSAVQFGNSSTSVLATLAALAEASAPLSNSSETPVATEEVVTAESVDGAIQQVVSSGGQQVITIVTDGIQLGNLHSIPTSGMGQPIIVTMPDGQQVLTVPATDIAEETVISEEPPAKRQCTEIMESRVESAEIEEREALQKQLDEANREAQKYRQQLLKKEQEAEAYRQKLEAMTRLQTNKEAV", "length": 382, "header": "tr|A0A9J7G6M9-1|A0A9J7JLR0_CRIGR Computationally mapped isoform of GA-binding protein subunit beta-1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Gabpb1 PE=4 SV=1 CANONICAL=A0A9J7JLR0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JLR0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLR0/entry", "sequence": { "sequence": "MSLVDLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHYSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHASIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQIAMQNQINTNPESPDTVTIHTATPQFIIGPGGVVNLTGLVSSENSSKATDETGVSAVQFGNSSTSVLATLAALAEASAPLSNSSETPVVATEEVVTAESVDGAIQQVVSSGGQQVITIVTDGIQLGNLHSIPTSGMGQPIIVTMPDGQQVLTVPATDIAEETVISEEPPAKRQCTEIMESRVESAEIEEREALQKQLDEANREAQKYRQQLLKKEQEAEAYRQKLEAMTRLQTNKEAV", "length": 395, "header": "tr|A0A9J7JLR0-1|A0A9J7JLR0_CRIGR Isoform 1 of GA-binding protein subunit beta-1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Gabpb1 PE=4 SV=1 CANONICAL=A0A9J7JLR0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JVB2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVB2/entry", "sequence": { "sequence": "MSLVDLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHYSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHASIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQIAMQNQINTNPESPDTVTIHTATPQFIIGPGGVVNLTGLVSSENSSKATDETGVSAVQFGNSSTSVLATLAALAEASAPLSNSSETPVATEEVVTAESVDGAIQQVVSSGGQQVITIVTDGIQLGNLHSIPTSGMGQPIIVTMPDGQQVLTVPATDIAEETVISEEPPAKRQCTEIMESRVESAEIEEREALQKQLDEANREAQKYRQQLLKKEQEAEAYRQKLEAMTRLQTNKEAV", "length": 394, "header": "tr|A0A9J7JVB2-1|A0A9J7JVB2_CRIGR Computationally mapped isoform of GA-binding protein subunit beta-1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Gabpb1 PE=4 SV=1 CANONICAL=A0A9J7JLR0-1" }, "locus": {} }, { "isoform_ac": "G3H050-1", "url": "https://www.uniprot.org/uniprotkb/G3H050/entry", "sequence": { "sequence": "MSLVDLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHYSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHASIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQIAMQNQINTNPESPDTVTIHTATPQFIIGPGGVVNLTDETGVSAVQFGNSSTSVLATLAALAEASAPLSNSSETPVVATEEVVTAESVDGAIQQVVSSGGQQVITIVTDGIQLGNLHSIPTSGMGQPIIVTMPDGQQVLTVPATDIAEETVISEEPPAKRQCTEIMESRVESAEIEEREALQKQLDEANREAQKYRQQLLKKEQEAEAYRQKLEAMTRLQTNKEAV", "length": 383, "header": "tr|G3H050-1|A0A9J7JLR0_CRIGR Computationally mapped isoform of GA-binding protein subunit beta-1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Gabpb1 PE=4 SV=1 CANONICAL=A0A9J7JLR0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H050", "url": "https://www.uniprot.org/uniprotkb/G3H050" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H050", "url": "https://www.uniprot.org/uniprotkb/G3H050" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100753587", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753587", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F7FDI9-1", "protein_name": "GA binding protein transcription factor subunit beta 1", "gene_name": "Gabpb1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSLVDLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHYSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHASIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQIAMQNQINTNPESPDTVTIHAATPQFIIGPGGVVNLTDETGVSAVQFGNSSTSVLATLAALAEASAPLSNSSETPVVATEEVVTAESVDGAIQQVVSSGGQQVITIVTDGIQLGNLHSIPTSGMGQPIIVTMPDGQQVLTVPATDIAEETVISEEPPAKRQCMEIIENRVESAEIEVRSLLPGERSASETAG", "length": 349 }, "evidence": [ { "id": "A0A9J7JLR0", "url": "https://omabrowser.org/oma/group/A0A9J7JLR0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q06547-1", "protein_name": "GA-binding protein subunit beta-1", "gene_name": "GABPB1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSLVDLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHYSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHASIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQIAMQNQINTNPESPDTVTIHAATPQFIIGPGGVVNLTGLVSSENSSKATDETGVSAVQFGNSSTSVLATLAALAEASAPLSNSSETPVVATEEVVTAESVDGAIQQVVSSGGQQVITIVTDGIQLGNLHSIPTSGIGQPIIVTMPDGQQVLTVPATDIAEETVISEEPPAKRQCIEIIENRVESAEIEEREALQKQLDEANREAQKYRQQLLKKEQEAEAYRQKLEAMTRLQTNKEAV", "length": 395 }, "evidence": [ { "id": "A0A9J7JLR0", "url": "https://omabrowser.org/oma/group/A0A9J7JLR0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q1RMI3-1", "protein_name": "GA-binding protein subunit beta-1", "gene_name": "GABPB1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSLVDLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHYSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHASIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQIAMQNQINTNPESPDTVTIHAATPQFIIGPGGVVNLTDETGVSAVQFGNSSTSVLATLAALAEASAPLSNSSETPVVATEEVVTAESVDGAIQQVVSSGGQQVITIVTDGIQLGNLHSIPTSGIGQPIIVTMPDGQQVLTVPATDIAEETVISEEPPAKRQCIEIIENRVESAEIEEREALQKQLDEANREAQKYRQQLLKKEQEAEAYRQKLEAMTRLQTNKEAV", "length": 383 }, "evidence": [ { "id": "A0A9J7JLR0", "url": "https://omabrowser.org/oma/group/A0A9J7JLR0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JLR0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLR0" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JLR0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLR0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JLR0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLR0" } ], "pmid": "" }, { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JLR0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLR0" } ], "pmid": "" }, { "name": "mitochondrion organization", "id": "GO:0007005", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007005", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JLR0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLR0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transcription cis-regulatory region binding", "id": "GO:0000976", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000976", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JLR0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLR0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 192, "end_pos": 194, "annotation": "n_glycosylation_sequon" }, { "start_pos": 201, "end_pos": 203, "annotation": "n_glycosylation_sequon" }, { "start_pos": 218, "end_pos": 220, "annotation": "n_glycosylation_sequon" }, { "start_pos": 239, "end_pos": 241, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 192, "end_pos": 194 }, { "start_pos": 201, "end_pos": 203 }, { "start_pos": 218, "end_pos": 220 }, { "start_pos": 239, "end_pos": 241 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JLW7-1", "uniprot_ac": "A0A9J7JLW7", "uniprot_id": "A0A9J7JLW7_CRIGR", "mass": { "chemical_mass": 30155.0, "monoisotopic_mass": 30155.0 }, "refseq": { "ac": "XP_007625846", "name": "transmembrane protein 116 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007625846" }, "gene_names": [ { "name": "Tmem116", "type": "recommended", "evidence": [ { "id": "A0A9J7JLW7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLW7" } ] }, { "name": "Tmem116", "type": "synonym", "evidence": [ { "id": "XP_007625846", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007625846" } ] } ], "protein_names": [ { "name": "Transmembrane protein 116 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7JLW7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLW7/entry#names_and_taxonomy" } ] }, { "name": "transmembrane protein 116 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007625846", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007625846" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613692.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007625846", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007625846" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JLW7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLW7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tmem116", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLW7", "locus": {} } ], "crossref": [ { "id": "A0A9J7JLW7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JLW7", "database": "AlphaFoldDB", "categories": [] }, { "id": "100762787", "url": "https://www.ncbi.nlm.nih.gov/gene/100762787", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:100762787", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762787", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YTISYIW", "url": "https://omabrowser.org/oma/group/YTISYIW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FWK7", "url": "https://www.orthodb.org/?gene=A0A9J7FWK7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JLW7", "url": "https://www.orthodb.org/?gene=A0A9J7JLW7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3H285", "url": "https://www.orthodb.org/?gene=G3H285", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23112", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23112", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23112:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23112:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_007625846", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007625846", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FWK7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWK7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FWK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWK7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JLW7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLW7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JLW7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLW7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3H285", "url": "https://www.uniprot.org/uniprotkb/G3H285", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3H285-1", "url": "https://www.uniprot.org/uniprotkb/G3H285-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MILYIASLLYTVNYIWYLYSELRMKHSQSGQSTAAQLIDHTCQSGNIVFILSSLIPLLLMTPVFCLGNVNGCFHNSSQSHRCVLMHSPPSAMIELLPSTNTSVCSTLYFYGVTVFLTSFFFSLLIITVLLLHAQTLYKKFVKSTGFLESEQWAVIYIVGQRVRFFPVAFVCCWGPAVTLLIIKLVKPQDTSLHMAFSVLQALTAASQGLLNCGIYGWTQCKFQQLKRELRCDADTQTPLLCSQKRIYCRSLALGPPDSSLTFAPSSSTIL", "length": 270, "header": "tr|A0A9J7JLW7-1|A0A9J7JLW7_CRIGR Isoform 1 of Transmembrane protein 116 isoform X1 OS=Cricetulus griseus OX=10029 GN=Tmem116 PE=4 SV=1 CANONICAL=A0A9J7JLW7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FWK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWK7/entry", "sequence": { "sequence": "MTPVFCLGNVNGCFHNSSQSHRCVLMHSPPSAMIELLPSTNTSVCSTLYFYGVTVFLTSFFFSLLIITVLLLHAQTLYKKFVKSTGFLESEQWAVIYIVGQRVRFFPVAFVCCWGPAVTLLIIKLVKPQDTSLHMAFSVLQALTAASQGLLNCGIYGWTQCKFQQLKRELRCDADTQTPLLCSQKRIYCRSLALGPPDSSLTFAPSSSTIL", "length": 211, "header": "tr|A0A9J7FWK7-1|A0A9J7JLW7_CRIGR Computationally mapped isoform of Transmembrane protein 116 isoform X1 OS=Cricetulus griseus OX=10029 GN=Tmem116 PE=4 SV=1 CANONICAL=A0A9J7JLW7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JLW7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLW7/entry", "sequence": { "sequence": "MILYIASLLYTVNYIWYLYSELRMKHSQSGQSTAAQLIDHTCQSGNIVFILSSLIPLLLMTPVFCLGNVNGCFHNSSQSHRCVLMHSPPSAMIELLPSTNTSVCSTLYFYGVTVFLTSFFFSLLIITVLLLHAQTLYKKFVKSTGFLESEQWAVIYIVGQRVRFFPVAFVCCWGPAVTLLIIKLVKPQDTSLHMAFSVLQALTAASQGLLNCGIYGWTQCKFQQLKRELRCDADTQTPLLCSQKRIYCRSLALGPPDSSLTFAPSSSTIL", "length": 270, "header": "tr|A0A9J7JLW7-1|A0A9J7JLW7_CRIGR Isoform 1 of Transmembrane protein 116 isoform X1 OS=Cricetulus griseus OX=10029 GN=Tmem116 PE=4 SV=1 CANONICAL=A0A9J7JLW7-1" }, "locus": {} }, { "isoform_ac": "G3H285-1", "url": "https://www.uniprot.org/uniprotkb/G3H285/entry", "sequence": { "sequence": "MKHSQSGQSTAAQLIDHTCQSGNIVFILSSLIPLLLMTPVFCLGNVNGCFHNSSQSHRCVLMHSPPSAMIELLPSTNTSVCSTLYFYGVTVFLTSFFFSLLIITVLLLHAQTLYKKFVKSTGFLESEQWAVIYIVGQRVRFFPVAFVCCWGPAVTLLIIKLVKPQDTSLHMAFSVLQALTAASQGLLNCGIYGWTQCKFQQLKRELRCDADTQTPLLCSQKRIYCRSLALGPPDSSLTFAPSSSTIL", "length": 247, "header": "tr|G3H285-1|A0A9J7JLW7_CRIGR Computationally mapped isoform of Transmembrane protein 116 isoform X1 OS=Cricetulus griseus OX=10029 GN=Tmem116 PE=4 SV=1 CANONICAL=A0A9J7JLW7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H285", "url": "https://www.uniprot.org/uniprotkb/G3H285" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H285", "url": "https://www.uniprot.org/uniprotkb/G3H285" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100762787", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762787", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A287BB11-1", "protein_name": "Transmembrane protein 116", "gene_name": "TMEM116", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MYKFFSAIQWIQFVMATLSVIGSSSLIAYAIFQNIQKSPEIRPIFYLSFSDLLLGICWLMEALLYGTSAASKDIFCYNLQAVGQIFYISSFLYTVYYIWYLYKELRMKHNQSGQSTFLPVIDHTYQVGQIVIVLSSLIPLLLMIPVFCLGNASECFRNFSQSHRCILMYSPPSAMAELLPSANTSVCSTLYFYGLIIFLASFLLSLFIIVVLLIQAQALFKKFVKSTGFLGSEQWAAIHIVEQQVLFYPVAFFCCWGPAAILMIIKLMKPQDTKLHMALYVLQALTGSSQGLLNCGVYGWTQYKFHQLKQKARRDADTQTPLLCSQKRFYSRGLSPLESTLAFATSTSDIF", "length": 351 }, "evidence": [ { "id": "A0A9J7JLW7", "url": "https://omabrowser.org/oma/group/A0A9J7JLW7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0AAA9SW93-1", "protein_name": "Transmembrane protein 116", "gene_name": "TMEM116", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVVRPFLPLPKSDIRPALFFSAIQWIQFVMATLSVIGSSSLVAYAIFQNIQKSPERRPLFYLSFSDLLLGIYWLTEALLYGTSTASKDIVCYNLQVVGQVLYISSFFYTINYIWYLYKELRMKPSQSAQRTFSLVIDYTCRIGQIAIILSSLIPLLLMVPVFCLGNVSECFRNFSQSHRCILIYSPPPAMAELLPSANTSVCSTLYFYGLIIFLASFVLSFFTIVVLLIQAQILYKKFLKSTGFLGSEQWAVIHIMEQRVRFYPVAFFCCWSPVVILMIIKLTKLQDTRLHMALYVLQPCLWLQKSLYCTTTCSSWGNGIPWTEEPGRLLVHGVSRVGHDLVTKPPPPPINQSMESVNIFGILVTYYSRIWNHCQPQST", "length": 379 }, "evidence": [ { "id": "A0A9J7JLW7", "url": "https://omabrowser.org/oma/group/A0A9J7JLW7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0ABK0LUC5-1", "protein_name": "Transmembrane protein 116", "gene_name": "Tmem116", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLGADLGSPRLLVIILHACFLFPAIQWIQFAVATLSVIGSSSLITYIVFQNPQKSAEVKSLLYLSFSDLLLGICWLIKALVYGTAAAHKDSICYNLQTAGEIFYLASLVFTVSYIWCLYAELRRKHSPSEQSTAAQVTDYACQGGCVMFLLSSLTPLLLMTPVFFLGNVNECFHNFSQNHRCMLMHSEPLPSTNTSVCSTLYLYGVTVFLASFFFSLLTIVVLLVLAQTLYKKFVKSMGLLESEQWAVIHTVGQRVRFFPAAFVCCWGPAVTLLIMKLTKPQETSLHVALSVLQALTAASQGLLNCGIYGWTQCKFQQIKREPPRDADTQTPLLCSQKRVYSRSPSASRPPLAFASSSSTVL", "length": 362 }, "evidence": [ { "id": "A0A9J7JLW7", "url": "https://omabrowser.org/oma/group/A0A9J7JLW7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A2BGS3-1", "protein_name": "Transmembrane protein 116", "gene_name": "tmem116", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDIFGENKTQMNTTTPTENWTSVYSIVRWIQMTMAVLSILGAGSIILYAAFQRLVKKPEVLPLFLLSLTDLLLALSWLCGGLLFTQSCNSYATCYNLHIVEQTLYMASFFYTLHYVWVLYTGLNGKYHRRLNGFPAEAARTRNCRCLGPVLSCLLPLLLTAPVFVAGNVFQCYTNFTQPYRCLLMHTGAVYLTSSASPELTACSIIQEYCMAIFLGTFLITIVGMSIFMGKARSLYKRVVTSQGFFGGSHWTTLRLLERRMVLYPSAFFFCWGPALLLATMMLVKPDVIEGKMGVALYILQAFTSASQGLLNCLVYGWTQKHFRSLSSSTVRDANTQTPLLRSQKPNYAALHSAASLTNFV", "length": 361 }, "evidence": [ { "id": "A0A9J7JLW7", "url": "https://omabrowser.org/oma/group/A0A9J7JLW7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "G3X9M9-1", "protein_name": "Transmembrane protein 116", "gene_name": "Tmem116", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAFPLETSRLEGRWEPLFPAIQWIQFAVATLSVIGSSSLLTYIAFQSPQKSAEIKPLLYLSFSDLLLGICWLVKALLYGTAAAHKDSICYNLQTVGEIFYLASLLYTVSYIWCLYSELRRKSGQSERSTVAQVTDYVCQGGHILFLLSSLIPPLLMTPVFLLGNVNECFHNFSESHRCILMHSPPSATPEPLPSTNTSVCSTLYFYGVTIFLASFFFSFLTIMVLLVHAQMLYKKFVKSTGLLESEQWAVIHTVGQRVRFFPVAFVCCWGPAVTLLIMKLTEPQETFLHMALSVLQALTAASQGLLNCGIYGWTQCKFQQIKREPHRDADTQTPLLCSQKRIYSRSPNLLESPLALASSSSTVL", "length": 364 }, "evidence": [ { "id": "A0A9J7JLW7", "url": "https://omabrowser.org/oma/group/A0A9J7JLW7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8NCL8-1", "protein_name": "Transmembrane protein 116", "gene_name": "TMEM116", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKHTQSGQSTSPLVIDYTCRVCQMAFVFSSLIPLLLMTPVFCLGNTSECFQNFSQSHKCILMHSPPSAMAELPPSANTSVCSTLYFYGIAIFLGSFVLSLLTIMVLLIRAQTLYKKFVKSTGFLGSEQWAVIHIVDQRVRFYPVAFFCCWGPAVILMIIKLTKPQDTKLHMALYVLQALTATSQGLLNCGVYGWTQHKFHQLKQEARRDADTQTPLLCSQKRFYSRGLNSLESTLTFPASTSTIF", "length": 245 }, "evidence": [ { "id": "A0A9J7JLW7", "url": "https://omabrowser.org/oma/group/A0A9J7JLW7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JLW7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLW7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JLW7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLW7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "adenylate cyclase-activating G protein-coupled receptor signaling pathway", "id": "GO:0007189", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007189", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JLW7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLW7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 100, "end_pos": 102, "annotation": "n_glycosylation_sequon" }, { "start_pos": 75, "end_pos": 77, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 100, "end_pos": 102 }, { "start_pos": 75, "end_pos": 77 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JLZ3-1", "uniprot_ac": "A0A9J7JLZ3", "uniprot_id": "A0A9J7JLZ3_CRIGR", "mass": { "chemical_mass": 34194.0, "monoisotopic_mass": 34194.0 }, "refseq": { "ac": "XP_027278050", "name": "protein C15orf41 homolog isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278050" }, "gene_names": [ { "name": "Cdin1", "type": "recommended", "evidence": [ { "id": "A0A9J7JLZ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLZ3" } ] }, { "name": "Cdin1", "type": "synonym", "evidence": [ { "id": "XP_027278050", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278050" } ] } ], "protein_names": [ { "name": "CDAN1-interacting nuclease 1", "type": "recommended", "evidence": [ { "id": "A0A9J7JLZ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLZ3/entry#names_and_taxonomy" } ] }, { "name": "protein C15orf41 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027278050", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278050" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027278050", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278050" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JLZ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLZ3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cdin1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLZ3", "locus": {} } ], "crossref": [ { "id": "A0A9J7JLZ3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JLZ3", "database": "AlphaFoldDB", "categories": [] }, { "id": "100765329", "url": "https://www.ncbi.nlm.nih.gov/gene/100765329", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029404", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029404", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100765329", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765329", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CYWNRFG", "url": "https://omabrowser.org/oma/group/CYWNRFG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JLZ3", "url": "https://www.orthodb.org/?gene=A0A9J7JLZ3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3H5P6", "url": "https://www.orthodb.org/?gene=G3H5P6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31661", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31661", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31661:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31661:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14811", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14811", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027278050", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278050", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G6A2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6A2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G6A2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6A2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G6V8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6V8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G6V8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6V8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G751", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G751", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G751-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G751-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GAS1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAS1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GAS1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAS1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H302", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H302", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H302-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H302-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JLZ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLZ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JLZ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLZ3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JVL1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVL1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JVL1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVL1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3H5P6", "url": "https://www.uniprot.org/uniprotkb/G3H5P6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3H5P6-1", "url": "https://www.uniprot.org/uniprotkb/G3H5P6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MILTKAQYEEIAQCLVSVPPTRQSLRKLKQRFPSSVHEHSNKWWLITQGKSQSQATLLSIFSQEYQKHIKRTHAKHHTPEAIESYYQRYLNGVGKNGAAPVLLELANEVDYAPSLMARIILERFLQGREQTPPSKSVINNMLRDPSQIPDGVLANQVYQCIVNDCCYGPLVDCIKHAIGYEHEVLLRDLLLKKNLSFLDEDQLRAKGYDKTPDFILQVPVAVEGHIIHWIESKASFGDECSHHAYLHGQFWSYWNRFGPGLVIYWYGFIQELDCNRERGILLKACFPTDIVTLCHSTA", "length": 298, "header": "tr|A0A9J7JLZ3-1|A0A9J7JLZ3_CRIGR Isoform 1 of CDAN1-interacting nuclease 1 OS=Cricetulus griseus OX=10029 GN=Cdin1 PE=4 SV=1 CANONICAL=A0A9J7JLZ3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G6A2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6A2/entry", "sequence": { "sequence": "MILTKAQYEEIAQCLVSVPPTRQSLRKLKQRFPSSVHEHSNKWWLITQGKSQSQATLLSIFSQEYQKHIKRTHAKHHTPEAIESYYQRYLNGVGKNGAAPVLLELANEVDYAPSLMARIILERFLQGREQTPPSKSVINNMLRDPSQIPDGVLANQVYQCIVNDCCYGPLVDCIKHAIGYEHEVLLRDLLLKKNLSFLDEDQLRAKGYDKTPDFILQVPVAVEGHIIHWIESKASFGDECSHHAYLHGQFWSYWNRWSR", "length": 259, "header": "tr|A0A9J7G6A2-1|A0A9J7JLZ3_CRIGR Computationally mapped isoform of CDAN1-interacting nuclease 1 OS=Cricetulus griseus OX=10029 GN=Cdin1 PE=4 SV=1 CANONICAL=A0A9J7JLZ3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G6V8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6V8/entry", "sequence": { "sequence": "MILTKAQYEEIAQCLVSVPPTRQSLRKLKQRFPSSVHEHSNKWWLITQGKSQSQATLLSIFSQEYQKHIKRTHAKHHTPEAIESYYQRYLNGVGKNGAAPVLLELANEVDYAPSLMARIILERFLQGREQTPPSKSVINNMLRDPSQIPDGVLANQVYQCIVNDCCYGPLVDCIKHAIGYEHEVLLRDLLLKKNLSFLDEDQLRAKGYDKTPDFILQVPVAVEGHIIHWIESKASFGDECSHHAYLHGQFWSYWNRICSVPFHLLICTPS", "length": 270, "header": "tr|A0A9J7G6V8-1|A0A9J7JLZ3_CRIGR Computationally mapped isoform of CDAN1-interacting nuclease 1 OS=Cricetulus griseus OX=10029 GN=Cdin1 PE=4 SV=1 CANONICAL=A0A9J7JLZ3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G751-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G751/entry", "sequence": { "sequence": "MILTKAQYEEIAQCLVSVPPTRQSLRKLKQRFPSSVHEHSNKWWLITQGKSQSQATLLSIFSQEYQKHIKRTHAKHHTPEAIESYYQRYLNGVGKNGAAPVLLELANEVDYAPSLMARIILERFLQGREQTPPSKSVINNMLRDPSQIPDGVLANQVYQCIVNDCCYGPLVDCIKHAIGYEHEVLLRDLLLKKNLSFLDEDQLRAKGYDKTPDFILQVPVGLDQAWSSIGMDLSRNWTATGKGASCSKPVSPRTSSPYAIAQPDPEDPEEKPEAMLLF", "length": 278, "header": "tr|A0A9J7G751-1|A0A9J7JLZ3_CRIGR Computationally mapped isoform of CDAN1-interacting nuclease 1 OS=Cricetulus griseus OX=10029 GN=Cdin1 PE=4 SV=1 CANONICAL=A0A9J7JLZ3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GAS1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAS1/entry", "sequence": { "sequence": "MILTKAQYEEIAQCLVSVPPTRQSLRKLKQRFPSSVHEHSNKWWLITQGKSQSQATLLSIFSQEYQKHIKRTHAKHHTPEAIESYYQRYLNGVGKNGAAPVLLELANEVDYAPSLMARIILERFLQGREQTPPSKSVINNMLRDPSQIPDGVLANQVYQCIVNDCCYGPLVDCIKHAIGYEHEVLLRDLLLKKNLSFLDEDQLRAKGYDKTPDFILQVPVAVEGHIIHWIESKASFGDECSHHAYLHGQFWSYWNRPC", "length": 258, "header": "tr|A0A9J7GAS1-1|A0A9J7JLZ3_CRIGR Computationally mapped isoform of CDAN1-interacting nuclease 1 OS=Cricetulus griseus OX=10029 GN=Cdin1 PE=4 SV=1 CANONICAL=A0A9J7JLZ3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H302-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H302/entry", "sequence": { "sequence": "MARIILERFLQGREQTPPSKSVINNMLRDPSQIPDGVLANQVYQCIVNDCCYGPLVDCIKHAIGYEHEVLLRDLLLKKNLSFLDEDQLRAKGYDKTPDFILQVPVAVEGHIIHWIESKASFGDECSHHAYLHGQFWSYWNRFGPGLVIYWYGFIQELDCNRERGILLKACFPTDIVTLCHSTA", "length": 183, "header": "tr|A0A9J7H302-1|A0A9J7H302_CRIGR Computationally mapped isoform of CDAN1-interacting nuclease 1 OS=Cricetulus griseus OX=10029 GN=Cdin1 PE=4 SV=1 CANONICAL=A0A9J7JLZ3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JLZ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLZ3/entry", "sequence": { "sequence": "MILTKAQYEEIAQCLVSVPPTRQSLRKLKQRFPSSVHEHSNKWWLITQGKSQSQATLLSIFSQEYQKHIKRTHAKHHTPEAIESYYQRYLNGVGKNGAAPVLLELANEVDYAPSLMARIILERFLQGREQTPPSKSVINNMLRDPSQIPDGVLANQVYQCIVNDCCYGPLVDCIKHAIGYEHEVLLRDLLLKKNLSFLDEDQLRAKGYDKTPDFILQVPVAVEGHIIHWIESKASFGDECSHHAYLHGQFWSYWNRFGPGLVIYWYGFIQELDCNRERGILLKACFPTDIVTLCHSTA", "length": 298, "header": "tr|A0A9J7JLZ3-1|A0A9J7JLZ3_CRIGR Isoform 1 of CDAN1-interacting nuclease 1 OS=Cricetulus griseus OX=10029 GN=Cdin1 PE=4 SV=1 CANONICAL=A0A9J7JLZ3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JVL1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVL1/entry", "sequence": { "sequence": "MILTKAQYEEIAQCLVSVPPTRQSLRKLKQRFPSSVHEHSNKWWLITQGKSQSQATLLSIFSQEYQKHIKRTHAKHHTPEAIESYYQRYLNGVGKNGAAPVLLELANEVDYAPSLMARIILERFLQGREQTPPSKSVINNMLRDPSQIPDGVLANQVYQCIVNDCCYGPLVDCIKHAIGYEHEVLLRDLLLKKNLSFLDEDQLRAKGYDKTPDFILQVPVAVEGHIIHWIESKASFGDECSHHAYLHGQFWSYWNRCFSSRDDALLLYMGYFSSQKPSHNPASA", "length": 284, "header": "tr|A0A9J7JVL1-1|A0A9J7JVL1_CRIGR Computationally mapped isoform of CDAN1-interacting nuclease 1 OS=Cricetulus griseus OX=10029 GN=Cdin1 PE=4 SV=1 CANONICAL=A0A9J7JLZ3-1" }, "locus": {} }, { "isoform_ac": "G3H5P6-1", "url": "https://www.uniprot.org/uniprotkb/G3H5P6/entry", "sequence": { "sequence": "MILTKAQYEEIAQCLVSVPPTRQSLRKLKQRFPSQSQATLLSIFSQEYQKHIKRTHAKHHTPEAIESYYQRYLNGVGKNGAAPVLLELANEVDYAPSLMARIILERFLQGREQTPPSKSVINNMLRDPSQIPDGVLANQVYQCIVNDCCYGPLVDCIKHAIGYEHEVLLRDLLLKKNLSFLDEDQLRAKGYDKTPDFILQVPVAVEGHIIHWIESKASFGDECSHHAYLHGQFWSYWNRFGPGLVIYWYGFIQELDCNRERGILLKACFPTDIVTLCHSTA", "length": 281, "header": "tr|G3H5P6-1|A0A9J7JLZ3_CRIGR Computationally mapped isoform of CDAN1-interacting nuclease 1 OS=Cricetulus griseus OX=10029 GN=Cdin1 PE=4 SV=1 CANONICAL=A0A9J7JLZ3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H5P6", "url": "https://www.uniprot.org/uniprotkb/G3H5P6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H5P6", "url": "https://www.uniprot.org/uniprotkb/G3H5P6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100765329", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765329", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZYC4-1", "protein_name": "CDAN1-interacting nuclease 1", "gene_name": "Cdin1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MILTKAQYEEIAQCLVSVPPTRQSLRKLKQRFPSQSQATLLSIFSQEYQKHIKRTHAKHHTPEAIESYYQRYLSGVGKNGAAPVLLELANEVDYAPSLMARIILERFLQGHEQTPPSKSVINSMLRDPSQIPDGVLANQVYQCIVNDCCYGPLVDCIKHAIGYEHEVLLRDLLLKKNLSFLDEDQLRAKGYDKTPDFILQVPVVMLCPLAVEGHIIHWIESKASFGDECSHHAYLHGQFWSYWNRFGPGLVIYWYGFIQELDCNRERGILLKASFPTDIVTLCHSTA", "length": 287 }, "evidence": [ { "id": "A0A9J7JLZ3", "url": "https://omabrowser.org/oma/group/A0A9J7JLZ3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q08BW6-1", "protein_name": "CDAN1-interacting nuclease 1", "gene_name": "cdin1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDAVSGGSATGTGEQVNNLRICRAEYRSISRFVEQLRPTRQCMKTLQTHFTHLPASTLLSIFSQEYQKRMKRSMARHHSPEVLRVYYQRYRDEAETRATEPLLLELANQVDLSPALLARLMLECFLEERNASVPSRQVLNNMLREPYLIPDLVLAKHIEQCTVNDCCYGPLVDCIKHAIGLEHEDTLRDKLRERNLSFLDENQLRVKGYDKTPDIILEVPIAVDGHIVHWIESKASFGDDHSHNTYLNEQFWSYCNRFGPGLVIYWFGFISELDCQRERGILLKDGFPTDISSLCAGPQR", "length": 300 }, "evidence": [ { "id": "A0A9J7JLZ3", "url": "https://omabrowser.org/oma/group/A0A9J7JLZ3/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q3U4G0-1", "protein_name": "CDAN1-interacting nuclease 1", "gene_name": "Cdin1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MILTKAQYEEIAQCLVSVPPTRQSLRKLKQRFPSQSQATLLSIFSQEYQKHIKRTHAKHHTPEAIESYYQRYLNGVGKNGAAPVLLELANEVDYAPSLMARIILERFLQGHEQTPPSKSVINSMLRDPSQIPDGVLANQVYQCIVNDCCYGPLVDCIKHAIGYEHEVLLRDLLLKKNLSFLDEDQLRAKGYDKTPDFILQVPVAVEGHIIHWIESKASFGDECSHHAYLHGQFWSYWNRFGPGLVIYWYGFIQELDCNRERGILLKASFPTDIVTLCHSTA", "length": 281 }, "evidence": [ { "id": "A0A9J7JLZ3", "url": "https://omabrowser.org/oma/group/A0A9J7JLZ3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q5E9S8-1", "protein_name": "CDAN1-interacting nuclease 1", "gene_name": "CDIN1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MILTKAQYDEIAQCLVSVPPTRQSLRKLKQRFPSQSQATLLSIFSQEYQKHIKRTHAKHHTSEAIESYYQRYLNGVRKNGAAPVLLELANEVDYAPSLMARIILERFLQKHEEAPPSKSVINSMLRDPSQIPDGVLANQVYQCIVNDCCYGPLVDCIKHAIGHEHEVLLRDLLLEKNLSFLDEDQLRARGYDKTPDFILQVPVAVEGHIIHWIESKASFGDECSHHAYLHDQFWSYWNRFGPGLVIYWYGFIQELDCNRERGILLHACFPTDIVTLCHSVA", "length": 281 }, "evidence": [ { "id": "A0A9J7JLZ3", "url": "https://omabrowser.org/oma/group/A0A9J7JLZ3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5F476-1", "protein_name": "CDAN1-interacting nuclease 1", "gene_name": "CDIN1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKLTKAQYDEIAQFLGHVQPTRQSLRKLKEKFPSQSQSTLLSIFSQEYQKQIKRTHAKHHTAEAVETYYQRYLNGVMKNAAAPVLLELANEMDFAPSLMARIVLERFLQEQEQAIPSKTLINSMLRDPSQIPDGVLANQIYQCTVNDCCYGPLVDCIKHFINNRSCSLCVAEDQLRAKGYDKTPDFILEVPVAVEGHIIHWIESKASFGDESSHQAYLQDQFWSYWNRFGPGLVIYWYGFIEELDCHRERGILLKDCFPTDIVTLRHSMAQR", "length": 272 }, "evidence": [ { "id": "A0A9J7JLZ3", "url": "https://omabrowser.org/oma/group/A0A9J7JLZ3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q9Y2V0-1", "protein_name": "CDAN1-interacting nuclease 1", "gene_name": "CDIN1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MILTKAQYDEIAQCLVSVPPTRQSLRKLKQRFPSQSQATLLSIFSQEYQKHIKRTHAKHHTSEAIESYYQRYLNGVVKNGAAPVLLDLANEVDYAPSLMARLILERFLQEHEETPPSKSIINSMLRDPSQIPDGVLANQVYQCIVNDCCYGPLVDCIKHAIGHEHEVLLRDLLLEKNLSFLDEDQLRAKGYDKTPDFILQVPVAVEGHIIHWIESKASFGDECSHHAYLHDQFWSYWNRFGPGLVIYWYGFIQELDCNRERGILLKACFPTNIVTLCHSIA", "length": 281 }, "evidence": [ { "id": "A0A9J7JLZ3", "url": "https://omabrowser.org/oma/group/A0A9J7JLZ3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JLZ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLZ3" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JLZ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLZ3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "erythrocyte differentiation", "id": "GO:0030218", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030218", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JLZ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLZ3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 194, "end_pos": 196, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 194, "end_pos": 196 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JPR0-1", "uniprot_ac": "A0A9J7JPR0", "uniprot_id": "A0A9J7JPR0_CRIGR", "mass": { "chemical_mass": 268716.0, "monoisotopic_mass": 268716.0 }, "refseq": { "ac": "XP_027271395", "name": "protein SON isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271395" }, "gene_names": [ { "name": "Son", "type": "recommended", "evidence": [ { "id": "A0A9J7JPR0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPR0" } ] }, { "name": "Son", "type": "synonym", "evidence": [ { "id": "XP_027271395", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271395" } ] } ], "protein_names": [ { "name": "Protein SON isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7JPR0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPR0/entry#names_and_taxonomy" } ] }, { "name": "protein SON isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027271395", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271395" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027271395", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271395" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JPR0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPR0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Son", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPR0", "locus": {} } ], "crossref": [ { "id": "cd19870", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19870", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100769440", "url": "https://www.ncbi.nlm.nih.gov/gene/100769440", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000467", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000467", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014720", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014720", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032922", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032922", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769440", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769440", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JPR0", "url": "https://www.orthodb.org/?gene=A0A9J7JPR0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46528", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46528", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46528:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46528:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01585", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01585", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14709", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14709", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17069", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17069", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027271395", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271395", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FXK5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXK5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FXK5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXK5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FY72", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FY72", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FY72-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FY72-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FZ61", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZ61", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FZ61-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZ61-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GX75", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GX75", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GX75-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GX75-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JPR0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPR0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JPR0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPR0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAADIEQVFRSFVVSKFREIQQELSSGRSEGQLNGETNAPIEGSQAGDTAASTRSLPNEEIVQKIEEVLSGVLDTELRYKPDLKETSRKSRCVSVQTDPTDEVPTKKSKKHKKHKNKKKKKKKEKEKKYKRQPEEPESKLKSRHDGNVDLESDSFLKFDSEPSAMALEHPVRAFGFSEASETPLVLEPPVGSVEVQESHILETLKPATKTAELSVGSTSAISEQCEQPVSVTMEPPMTKVLDSFAAAPVPMPTAVLKSPEPVVTMSVEYQKSMLKSLETTSPEISKTTLVELPIAKVLEASETLMLVSETPTEVYPEPSTSTMDFPESSTTDALRLPEQPVEAPSEIADSSMTRPQESLELPKTTAVELQESSGVSALELPGPPATSMLELQGPPVTPVLELPGPSATPVPELSGPLSTPVPELPGPPVTAVPELPGPSVTAVPQLLQELPGPPVPSVGLEPPQEAPEPPVMAQELPGVPAGSAAIELTGQPAVTVAMELTQQPVTTTEFEQPVAMTTVEHPGHPEVTTATGLLGQPEAAMVLELPGQPVATTALELSGQPSVTGVSELSGLPSATRALELSGQPVATGALELPGQLMATGALEFSGQSGAAGALELLGQPLATGVLELPGQPGAPELPGQPVATVALEISVQSVVTTSELSTMTVSQSLEVPSTTALESYNTVAQELPTTLVGETSVTVGVDPLMAQESHMLASNTMETHMLASNTMDSQMLASNTMDSQMLASNTMDSQMLASSTMDSQMLASSTMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQMLASGAMDSQMLASGTMDAQMLASGTMDAQMLASSTQDSAMMGSKSPDPYRLAQDPYRLAQDPYRLGHDPYRLGHDAYRLGQDPYRLGHDPYRLTPDPYRMSPRPYRIAPRSYRIAPRPYRLAPRPLMLASRRSMMMSYAAERSMMSSYERSMMSYERSMMSPMAERSMMSAYERSMMSPMAERSMMSAYERSMMSAYERSMMSAYERSMMSPMADRSMMSMGADRSMMSSYSTADRSMMSSYSAADRSMMSSYTDRSMMSMAADSYTDSYTDSYTEAYMVPPLPPEEPPTMPPLPPEEPPMTPPLPPEEPPEGPALSTDQSVLTADNTWSTEVTLPSEESVSQPEPPVSQSEISEPLTVPANYSVSESETSMLASEAVMTVAEPAQEPESSVISTPVESAVVAEHEVVTERPVAYMASEATMSTEPAVLSEPSVMSETSETYDSMRPLGHGHAISEVSMSLLEPAGTISQPAESSLELPSMAVPAPPTMTTPESAAVGITELPAVADPEPPIMVVPESPAVAFPEPPAVAAPEPPPVTAPEPPSSIPVSEPPVAGPELPALADPEHATTAGSGVPSLEPSVPVVEPAVSVFQPVMVVSEPCAPVQEPTVAVSEPAVTVSEHTQILPPEMALESSPIVESSVLSSHVMKGMNLLSGDESLGADVGMQGILLHPGEEPHDGGHLKSDLYENDYDRNTDLAINSHLIAKDVEQNTVCAATIGPAGESSEEKVLPVIETKEVTELDTRPPVSEAEVGRSLSAQLALGTDTVGTSKGLEFVTSSVPSLASKYDAEVSLTTQDTEHDMVIATSPSGGSEADIEGPLPAKDIHLDLPSTTLVGKDTEDPLPIKESEQTAAVGLSPKESSEDKAVSPPNKETVPDVGYPAGIDEINEADLVRPLLPKDMERLTSLRAGMEGPLLAGEVERDKLAASPVVISIPERASESSSEEKDDYEIFVKVKDTHEKSKKNKNRDKGEKEKKRDSSLRSRSKRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQTRSRSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTARARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRRRSRSVVRRRSFSISPVRLRRSRTPLRRRFSRSPIRRKRSRSSERGRSPKRLTDLDKAQLLEIAKANAAAMCAKAGVPLPPNLKPAPPPTIEEKVAKKSGGATIEELTEKCKQIAQSKEDDDVIVNKPHVSDEEEEEPPFYHHPFKLSEPKPIFFNLNIAAAKPTPPKSQVTLTKEFPVSSGSQHRKKEADSVYGEWVPVEKNGEENKDDDNVFSSSLPSEPVDISTAMSERALAQKRLSENAFDLEAMSMLNRAQERIDAWAQLNSIPGQFTGSTGVQVLTQEQLANTGAQAWIKKDQFLRAAPVTGGMGAVLMRKMGWREGEGLGKNKEGNKEPILVDFKTDRKGLVAVGERAQKRSGNFSAAMKDLSGKHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKATAATVVLQAMGLVPKDLMANATCFRSASRR", "length": 2480, "header": "tr|A0A9J7JPR0-1|A0A9J7JPR0_CRIGR Isoform 1 of Protein SON isoform X2 OS=Cricetulus griseus OX=10029 GN=Son PE=4 SV=1 CANONICAL=A0A9J7JPR0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FXK5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXK5/entry", "sequence": { "sequence": "MAADIEQVFRSFVVSKFREIQQELSSGRSEGQLNGETNAPIEGSQAGDTAASTRSLPNEEIVQKIEEVLSGVLDTELRYKPDLKETSRKSRCVSVQTDPTDEVPTKKSKKHKKHKNKKKKKKKEKEKKYKRQPEEPESKLKSRHDGNVDLESDSFLKFDSEPSAMALEHPVRAFGFSEASETPLVLEPPVGSVEVQESHILETLKPATKTAELSVGSTSAISEQCEQPVSVTMEPPMTKVLDSFAAAPVPMPTAVLKSPEPVVTMSVEYQKSMLKSLETTSPEISKTTLVELPIAKVLEASETLMLVSETPTEVYPEPSTSTMDFPESSTTDALRLPEQPVEAPSEIADSSMTRPQESLELPKTTAVELQESSGVSALELPGPPATSMLELQGPPVTPVLELPGPSATPVPELSGPLSTPVPELPGPPVTAVPELPGPSVTAVPQLLQELPGPPVPSVGLEPPQEAPEPPVMAQELPGVPAGSAAIELTGQPAVTVAMELTQQPVTTTEFEQPVAMTTVEHPGHPEVTTATGLLGQPEAAMVLELPGQPVATTALELSGQPSVTGVSELSGLPSATRALELSGQPVATGALELPGQLMATGALEFSGQSGAAGALELLGQPLATGVLELPGQPGAPELPGQPVATVALEISVQSVVTTSELSTMTVSQSLEVPSTTALESYNTVAQELPTTLVGETSVTVGVDPLMAQESHMLASNTMETHMLASNTMDSQMLASNTMDSQMLASNTMDSQMLASSTMDSQMLASSTMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQMLASGAMDSQMLASGTMDAQMLASGTMDAQMLASSTQDSAMMGSKSPDPYRLAQDPYRLAQDPYRLGHDPYRLGHDAYRLGQDPYRLGHDPYRLTPDPYRMSPRPYRIAPRSYRIAPRPYRLAPRPLMLASRRSMMMSYAAERSMMSSYERSMMSYERSMMSPMAERSMMSAYERSMMSPMAERSMMSAYERSMMSAYERSMMSAYERSMMSPMADRSMMSMGADRSMMSSYSTADRSMMSSYSAADRSMMSSYTDRSMMSMAADSYTDSYTDSYTEAYMVPPLPPEEPPTMPPLPPEEPPMTPPLPPEEPPEGPALSTDQSVLTADNTWSTEVTLPSEESVSQPEPPVSQSEISEPLTVPANYSVSESETSMLASEAVMTVAEPAQEPESSVISTPVESAVVAEHEVVTERPVAYMASEATMSTEPAVLSEPSVMSETSETYDSMRPLGHGHAISEVSMSLLEPAGTISQPAESSLELPSMAVPAPPTMTTPESAAVGITELPAVADPEPPIMVVPESPAVAFPEPPAVAAPEPPPVTAPEPPSSIPVSEPPVAGPELPALADPEHATTAGSGVPSLEPSVPVVEPAVSVFQPVMVVSEPCAPVQEPTVAVSEPAVTVSEHTQILPPEMALESSPIVESSVLSSHVMKGMNLLSGDESLGADVGMQGILLHPGEEPHDGGHLKSDLYENDYDRNTDLAINSHLIAKDVEQNTVCAATIGPAGESSEEKVLPVIETKEVTELDTRPPVSEAEVGRSLSAQLALGTDTVGTSKGLEFVTSSVPSLASKYDAEVSLTTQDTEHDMVIATSPSGGSEADIEGPLPAKDIHLDLPSTTLVGKDTEDPLPIKESEQTAAVGLSPKESSEDKAVSPPNKETVPDVGYPAGIDEINEADLVRPLLPKDMERLTSLRAGMEGPLLAGEVERDKLAASPVVISIPERASESSSEEKDDYEIFVKVKDTHEKSKKNKNRDKGEKEKKRDSSLRSRSKRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQTRSRSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTARARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRRRSRSVVRRRSFSISPVRLRRSRTPLRRRFSRSPIRRKRSRSSERGRSPKRLTDLDKAQLLEIAKANAAAMCAKAGVPLPPNLKPAPPPTIEEKVAKKSGGATIEELTEF", "length": 2129, "header": "tr|A0A9J7FXK5-1|A0A9J7JPR0_CRIGR Computationally mapped isoform of Protein SON isoform X2 OS=Cricetulus griseus OX=10029 GN=Son PE=4 SV=1 CANONICAL=A0A9J7JPR0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FY72-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FY72/entry", "sequence": { "sequence": "MAADIEQVFRSFVVSKFREIQQELSSGRSEGQLNGETNAPIEGSQAGDTAASTRSLPNEEIVQKIEEVLSGVLDTELRYKPDLKETSRKSRCVSVQTDPTDEVPTKKSKKHKKHKNKKKKKKKEKEKKYKRQPEEPESKLKSRHDGNVDLESDSFLKFDSEPSAMALEHPVRAFGFSEASETPLVLEPPVGSVEVQESHILETLKPATKTAELSVGSTSAISEQCEQPVSVTMEPPMTKVLDSFAAAPVPMPTAVLKSPEPVVTMSVEYQKSMLKSLETTSPEISKTTLVELPIAKVLEASETLMLVSETPTEVYPEPSTSTMDFPESSTTDALRLPEQPVEAPSEIADSSMTRPQESLELPKTTAVELQESSGVSALELPGPPATSMLELQGPPVTPVLELPGPSATPVPELSGPLSTPVPELPGPPVTAVPELPGPSVTAVPQLLQELPGPPVPSVGLEPPQEAPEPPVMAQELPGVPAGSAAIELTGQPAVTVAMELTQQPVTTTEFEQPVAMTTVEHPGHPEVTTATGLLGQPEAAMVLELPGQPVATTALELSGQPSVTGVSELSGLPSATRALELSGQPVATGALELPGQLMATGALEFSGQSGAAGALELLGQPLATGVLELPGQPGAPELPGQPVATVALEISVQSVVTTSELSTMTVSQSLEVPSTTALESYNTVAQELPTTLVGETSVTVGVDPLMAQESHMLASNTMETHMLASNTMDSQMLASNTMDSQMLASNTMDSQMLASSTMDSQMLASSTMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQMLASGAMDSQMLASGTMDAQMLASGTMDAQMLASSTQDSAMMGSKSPDPYRLAQDPYRLAQDPYRLGHDPYRLGHDAYRLGQDPYRLGHDPYRLTPDPYRMSPRPYRIAPRSYRIAPRPYRLAPRPLMLASRRSMMMSYAAERSMMSSYERSMMSYERSMMSPMAERSMMSAYERSMMSPMAERSMMSAYERSMMSAYERSMMSAYERSMMSPMADRSMMSMGADRSMMSSYSTADRSMMSSYSAADRSMMSSYTDRSMMSMAADSYTDSYTDSYTEAYMVPPLPPEEPPTMPPLPPEEPPMTPPLPPEEPPEGPALSTDQSVLTADNTWSTEVTLPSEESVSQPEPPVSQSEISEPLTVPANYSVSESETSMLASEAVMTVAEPAQEPESSVISTPVESAVVAEHEVVTERPVAYMASEATMSTEPAVLSEPSVMSETSETYDSMRPLGHGHAISEVSMSLLEPAGTISQPAESSLELPSMAVPAPPTMTTPESAAVGITELPAVADPEPPIMVVPESPAVAFPEPPAVAAPEPPPVTAPEPPSSIPVSEPPVAGPELPALADPEHATTAGSGVPSLEPSVPVVEPAVSVFQPVMVVSEPCAPVQEPTVAVSEPAVTVSEHTQILPPEMALESSPIVESSVLSSHVMKGMNLLSGDESLGADVGMQGILLHPGEEPHDGGHLKSDLYENDYDRNTDLAINSHLIAKDVEQNTVCAATIGPAGESSEEKVLPVIETKEVTELDTRPPVSEAEVGRSLSAQLALGTDTVGTSKGLEFVTSSVPSLASKYDAEVSLTTQDTEHDMVIATSPSGGSEADIEGPLPAKDIHLDLPSTTLVGKDTEDPLPIKESEQTAAVGLSPKESSEDKAVSPPNKETVPDVGYPAGIDEINEADLVRPLLPKDMERLTSLRAGMEGPLLAGEVERDKLAASPVVISIPERASESSSEEKDDYEIFVKVKDTHEKSKKNKNRDKGEKEKKRDSSLRSRSKRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQTRSRSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTARARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRRRSRSVVRRRSFSISPVRLRRSRTPLRRRFSRSPIRRKRSRSSERGRSPKRLTDLDKAQLLEIAKANAAAMCAKAGVPLPPNLKPAPPPTIEEKVAKKSGGATIEELTEKCKQIAQSKEDDDVIVNKPHVSDEEEEEPPFYHHPFKLSEPKPIFFNLNIAAAKPTPPKSQVTLTKEFPVSSGSQHRKKEADSVYGEWVPVEKNGEENKDDDNVFSSSLPSEPVDISTAMSERALAQKRLSENAFDLEAMSMLNRAQERIDAWAQLNSIPGQFTGSTGVQVLTQEQLANTGAQAWIKKDQFLRAAPVTGGMGAVLMRKMGWREGEGLGKNKEGNKEPILVDFKTDRKGLVAVGERAQKRSGNFSAAMKDLSGKHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPYQPNCMFFLNRY", "length": 2447, "header": "tr|A0A9J7FY72-1|A0A9J7JPR0_CRIGR Computationally mapped isoform of Protein SON isoform X2 OS=Cricetulus griseus OX=10029 GN=Son PE=4 SV=1 CANONICAL=A0A9J7JPR0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FZ61-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZ61/entry", "sequence": { "sequence": "MAADIEQVFRSFVVSKFREIQQELSSGRSEGQLNGETNAPIEGSQAGDTAASTRSLPNEEIVQKIEEVLSGVLDTELRYKPDLKETSRKSRCVSVQTDPTDEVPTKKSKKHKKHKNKKKKKKKEKEKKYKRQPEEPESKLKSRHDGNVDLESDSFLKFDSEPSAMALEHPVRAFGFSEASETPLVLEPPVGSVEVQESHILETLKPATKTAELSVGSTSAISEQCEQPVSVTMEPPMTKVLDSFAAAPVPMPTAVLKSPEPVVTMSVEYQKSMLKSLETTSPEISKTTLVELPIAKVLEASETLMLVSETPTEVYPEPSTSTMDFPESSTTDALRLPEQPVEAPSEIADSSMTRPQESLELPKTTAVELQESSGVSALELPGPPATSMLELQGPPVTPVLELPGPSATPVPELSGPLSTPVPELPGPPVTAVPELPGPSVTAVPQLLQELPGPPVPSVGLEPPQEAPEPPVMAQELPGVPAGSAAIELTGQPAVTVAMELTQQPVTTTEFEQPVAMTTVEHPGHPEVTTATGLLGQPEAAMVLELPGQPVATTALELSGQPSVTGVSELSGLPSATRALELSGQPVATGALELPGQLMATGALEFSGQSGAAGALELLGQPLATGVLELPGQPGAPELPGQPVATVALEISVQSVVTTSELSTMTVSQSLEVPSTTALESYNTVAQELPTTLVGETSVTVGVDPLMAQESHMLASNTMETHMLASNTMDSQMLASNTMDSQMLASNTMDSQMLASSTMDSQMLASSTMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQMLASGAMDSQMLASGTMDAQMLASGTMDAQMLASSTQDSAMMGSKSPDPYRLAQDPYRLAQDPYRLGHDPYRLGHDAYRLGQDPYRLGHDPYRLTPDPYRMSPRPYRIAPRSYRIAPRPYRLAPRPLMLASRRSMMMSYAAERSMMSSYERSMMSYERSMMSPMAERSMMSAYERSMMSPMAERSMMSAYERSMMSAYERSMMSAYERSMMSPMADRSMMSMGADRSMMSSYSTADRSMMSSYSAADRSMMSSYTDRSMMSMAADSYTDSYTDSYTEAYMVPPLPPEEPPTMPPLPPEEPPMTPPLPPEEPPEGPALSTDQSVLTADNTWSTEVTLPSEESVSQPEPPVSQSEISEPLTVPANYSVSESETSMLASEAVMTVAEPAQEPESSVISTPVESAVVAEHEVVTERPVAYMASEATMSTEPAVLSEPSVMSETSETYDSMRPLGHGHAISEVSMSLLEPAGTISQPAESSLELPSMAVPAPPTMTTPESAAVGITELPAVADPEPPIMVVPESPAVAFPEPPAVAAPEPPPVTAPEPPSSIPVSEPPVAGPELPALADPEHATTAGSGVPSLEPSVPVVEPAVSVFQPVMVVSEPCAPVQEPTVAVSEPAVTVSEHTQILPPEMALESSPIVESSVLSSHVMKGMNLLSGDESLGADVGMQGILLHPGEEPHDGGHLKSDLYENDYDRNTDLAINSHLIAKDVEQNTVCAATIGPAGESSEEKVLPVIETKEVTELDTRPPVSEAEVGRSLSAQLALGTDTVGTSKGLEFVTSSVPSLASKYDAEVSLTTQDTEHDMVIATSPSGGSEADIEGPLPAKDIHLDLPSTTLVGKDTEDPLPIKESEQTAAVGLSPKESSEDKAVSPPNKETVPDVGYPAGIDEINEADLVRPLLPKDMERLTSLRAGMEGPLLAGEVERDKLAASPVVISIPERASESSSEEKDDYEIFVKVKDTHEKSKKNKNRDKGEKEKKRDSSLRSRSKRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQTRSRSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTARARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRRRSRSVVRRRSFSISPVRLRRSRTPLRRRFSRSPIRRKRSRSSERGRSPKRLTDLDKAQLLEIAKANAAAMCAKAGVPLPPNLKPAPPPTIEEKVAKKSGGATIEELTEKCKQIAQSKEDDDVIVNKPHVSDEEEEEPPFYHHPFKLSEPKPIFFNLNIAAAKPTPPKSQVTLTKEFPVSSGSQHRKKEADSVYGEWVPVEKNGEENKDDDNVFSSSLPSEGRVKRQGRVKRQMKQPAASHLTVTRCNSLCGTKPQSEKHRIAEKSVITTLPNIGPSMHLWEGSPRYNYLASRFASRLYSSRFWW", "length": 2324, "header": "tr|A0A9J7FZ61-1|A0A9J7JPR0_CRIGR Computationally mapped isoform of Protein SON isoform X2 OS=Cricetulus griseus OX=10029 GN=Son PE=4 SV=1 CANONICAL=A0A9J7JPR0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GX75-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GX75/entry", "sequence": { "sequence": "MAADIEQVFRSFVVSKFREIQQELSSGRSEGQLNGETNAPIEGSQAGDTAASTRSLPNEEIVQKIEEVLSGVLDTELRYKPDLKETSRKSRCVSVQTDPTDEVPTKKSKKHKKHKNKKKKKKKEKEKKYKRQPEEPESKLKSRHDGNVDLESDSFLKFDSEPSAMALEHPVRAFGFSEASETPLVLEPPVGSVEVQESHILETLKPATKTAELSVGSTSAISEQCEQPVSVTMEPPMTKVLDSFAAAPVPMPTAVLKSPEPVVTMSVEYQKSMLKSLETTSPEISKTTLVELPIAKVLEASETLMLVSETPTEVYPEPSTSTMDFPESSTTDALRLPEQPVEAPSEIADSSMTRPQESLELPKTTAVELQESSGVSALELPGPPATSMLELQGPPVTPVLELPGPSATPVPELSGPLSTPVPELPGPPVTAVPELPGPSVTAVPQLLQELPGPPVPSVGLEPPQEAPEPPVMAQELPGVPAGSAAIELTGQPAVTVAMELTQQPVTTTEFEQPVAMTTVEHPGHPEVTTATGLLGQPEAAMVLELPGQPVATTALELSGQPSVTGVSELSGLPSATRALELSGQPVATGALELPGQLMATGALEFSGQSGAAGALELLGQPLATGVLELPGQPGAPELPGQPVATVALEISVQSVVTTSELSTMTVSQSLEVPSTTALESYNTVAQELPTTLVGETSVTVGVDPLMAQESHMLASNTMETHMLASNTMDSQMLASNTMDSQMLASNTMDSQMLASSTMDSQMLASSTMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQMLASGAMDSQMLASGTMDAQMLASGTMDAQMLASSTQDSAMMGSKSPDPYRLAQDPYRLAQDPYRLGHDPYRLGHDAYRLGQDPYRLGHDPYRLTPDPYRMSPRPYRIAPRSYRIAPRPYRLAPRPLMLASRRSMMMSYAAERSMMSSYERSMMSYERSMMSPMAERSMMSAYERSMMSPMAERSMMSAYERSMMSAYERSMMSAYERSMMSPMADRSMMSMGADRSMMSSYSTADRSMMSSYSAADRSMMSSYTDRSMMSMAADSYTDSYTDSYTEAYMVPPLPPEEPPTMPPLPPEEPPMTPPLPPEEPPEGPALSTDQSVLTADNTWSTEVTLPSEESVSQPEPPVSQSEISEPLTVPANYSVSESETSMLASEAVMTVAEPAQEPESSVISTPVESAVVAEHEVVTERPVAYMASEATMSTEPAVLSEPSVMSETSETYDSMRPLGHGHAISEVSMSLLEPAGTISQPAESSLELPSMAVPAPPTMTTPESAAVGITELPAVADPEPPIMVVPESPAVAFPEPPAVAAPEPPPVTAPEPPSSIPVSEPPVAGPELPALADPEHATTAGSGVPSLEPSVPVVEPAVSVFQPVMVVSEPCAPVQEPTVAVSEPAVTVSEHTQILPPEMALESSPIVESSVLSSHVMKGMNLLSGDESLGADVGMQGILLHPGEEPHDGGHLKSDLYENDYDRNTDLAINSHLIAKDVEQNTVCAATIGPAGESSEEKVLPVIETKEVTELDTRPPVSEAEVGRSLSAQLALGTDTVGTSKGLEFVTSSVPSLASKYDAEVSLTTQDTEHDMVIATSPSGGSEADIEGPLPAKDIHLDLPSTTLVGKDTEDPLPIKESEQTAAVGLSPKESSEDKAVSPPNKETVPDVGYPAGIDEINEADLVRPLLPKDMERLTSLRAGMEGPLLAGEVERDKLAASPVVISIPERASESSSEEKDDYEIFVKVKDTHEKSKKNKNRDKGEKEKKRDSSLRSRSKRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQTRSRSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTARARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRRRSRSVVRRRSFSISPVRLRRSRTPLRRRFSRSPIRRKRSRSSERGRSPKRLTDLDKAQLLEIAKANAAAMCAKAGVPLPPNLKPAPPPTIEEKVAKKSGGATIEELTEKCKQIAQSKEDDDVIVNKPHVSDEEEEEPPFYHHPFKLSEPKPIFFNLNIAAAKPTPPKSQVTLTKEFPVSSGSQHRKKEADSVYGEWVPVEKNGEENKDDDNVFSSSLPSEPVDISTAMSERALAQKRLSENAFDLEAMSMLNRAQERIDAWAQLNSIPGQFTGSTGVQVLTQEQLANTGAQAWIKKAQFENH", "length": 2322, "header": "tr|A0A9J7GX75-1|A0A9J7GX75_CRIGR Computationally mapped isoform of Protein SON isoform X5 OS=Cricetulus griseus OX=10029 GN=Son PE=4 SV=1 CANONICAL=A0A9J7JPR0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JPR0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPR0/entry", "sequence": { "sequence": "MAADIEQVFRSFVVSKFREIQQELSSGRSEGQLNGETNAPIEGSQAGDTAASTRSLPNEEIVQKIEEVLSGVLDTELRYKPDLKETSRKSRCVSVQTDPTDEVPTKKSKKHKKHKNKKKKKKKEKEKKYKRQPEEPESKLKSRHDGNVDLESDSFLKFDSEPSAMALEHPVRAFGFSEASETPLVLEPPVGSVEVQESHILETLKPATKTAELSVGSTSAISEQCEQPVSVTMEPPMTKVLDSFAAAPVPMPTAVLKSPEPVVTMSVEYQKSMLKSLETTSPEISKTTLVELPIAKVLEASETLMLVSETPTEVYPEPSTSTMDFPESSTTDALRLPEQPVEAPSEIADSSMTRPQESLELPKTTAVELQESSGVSALELPGPPATSMLELQGPPVTPVLELPGPSATPVPELSGPLSTPVPELPGPPVTAVPELPGPSVTAVPQLLQELPGPPVPSVGLEPPQEAPEPPVMAQELPGVPAGSAAIELTGQPAVTVAMELTQQPVTTTEFEQPVAMTTVEHPGHPEVTTATGLLGQPEAAMVLELPGQPVATTALELSGQPSVTGVSELSGLPSATRALELSGQPVATGALELPGQLMATGALEFSGQSGAAGALELLGQPLATGVLELPGQPGAPELPGQPVATVALEISVQSVVTTSELSTMTVSQSLEVPSTTALESYNTVAQELPTTLVGETSVTVGVDPLMAQESHMLASNTMETHMLASNTMDSQMLASNTMDSQMLASNTMDSQMLASSTMDSQMLASSTMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQMLASGAMDSQMLASGTMDAQMLASGTMDAQMLASSTQDSAMMGSKSPDPYRLAQDPYRLAQDPYRLGHDPYRLGHDAYRLGQDPYRLGHDPYRLTPDPYRMSPRPYRIAPRSYRIAPRPYRLAPRPLMLASRRSMMMSYAAERSMMSSYERSMMSYERSMMSPMAERSMMSAYERSMMSPMAERSMMSAYERSMMSAYERSMMSAYERSMMSPMADRSMMSMGADRSMMSSYSTADRSMMSSYSAADRSMMSSYTDRSMMSMAADSYTDSYTDSYTEAYMVPPLPPEEPPTMPPLPPEEPPMTPPLPPEEPPEGPALSTDQSVLTADNTWSTEVTLPSEESVSQPEPPVSQSEISEPLTVPANYSVSESETSMLASEAVMTVAEPAQEPESSVISTPVESAVVAEHEVVTERPVAYMASEATMSTEPAVLSEPSVMSETSETYDSMRPLGHGHAISEVSMSLLEPAGTISQPAESSLELPSMAVPAPPTMTTPESAAVGITELPAVADPEPPIMVVPESPAVAFPEPPAVAAPEPPPVTAPEPPSSIPVSEPPVAGPELPALADPEHATTAGSGVPSLEPSVPVVEPAVSVFQPVMVVSEPCAPVQEPTVAVSEPAVTVSEHTQILPPEMALESSPIVESSVLSSHVMKGMNLLSGDESLGADVGMQGILLHPGEEPHDGGHLKSDLYENDYDRNTDLAINSHLIAKDVEQNTVCAATIGPAGESSEEKVLPVIETKEVTELDTRPPVSEAEVGRSLSAQLALGTDTVGTSKGLEFVTSSVPSLASKYDAEVSLTTQDTEHDMVIATSPSGGSEADIEGPLPAKDIHLDLPSTTLVGKDTEDPLPIKESEQTAAVGLSPKESSEDKAVSPPNKETVPDVGYPAGIDEINEADLVRPLLPKDMERLTSLRAGMEGPLLAGEVERDKLAASPVVISIPERASESSSEEKDDYEIFVKVKDTHEKSKKNKNRDKGEKEKKRDSSLRSRSKRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQTRSRSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTARARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRRRSRSVVRRRSFSISPVRLRRSRTPLRRRFSRSPIRRKRSRSSERGRSPKRLTDLDKAQLLEIAKANAAAMCAKAGVPLPPNLKPAPPPTIEEKVAKKSGGATIEELTEKCKQIAQSKEDDDVIVNKPHVSDEEEEEPPFYHHPFKLSEPKPIFFNLNIAAAKPTPPKSQVTLTKEFPVSSGSQHRKKEADSVYGEWVPVEKNGEENKDDDNVFSSSLPSEPVDISTAMSERALAQKRLSENAFDLEAMSMLNRAQERIDAWAQLNSIPGQFTGSTGVQVLTQEQLANTGAQAWIKKDQFLRAAPVTGGMGAVLMRKMGWREGEGLGKNKEGNKEPILVDFKTDRKGLVAVGERAQKRSGNFSAAMKDLSGKHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKATAATVVLQAMGLVPKDLMANATCFRSASRR", "length": 2480, "header": "tr|A0A9J7JPR0-1|A0A9J7JPR0_CRIGR Isoform 1 of Protein SON isoform X2 OS=Cricetulus griseus OX=10029 GN=Son PE=4 SV=1 CANONICAL=A0A9J7JPR0-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1164, "start_aa": "Thr", "end_pos": 1164, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1164", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 2184, "start_aa": "Thr", "end_pos": 2184, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2184", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 408, "start_aa": "Thr", "end_pos": 408, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr408", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 495, "start_aa": "Thr", "end_pos": 495, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr495", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FY72", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FY72" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FY72", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FY72" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769440", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769440", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JPR0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPR0" } ], "pmid": "" }, { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JPR0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPR0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "mRNA processing", "id": "GO:0006397", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006397", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JPR0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPR0" } ], "pmid": "" }, { "name": "RNA splicing", "id": "GO:0008380", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008380", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JPR0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPR0" } ], "pmid": "" }, { "name": "regulation of mRNA splicing, via spliceosome", "id": "GO:0048024", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048024", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JPR0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPR0" } ], "pmid": "" }, { "name": "regulation of cell cycle", "id": "GO:0051726", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051726", "evidence": [ { 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This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027272136", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272136" } ] }, { "annotation": "A-kinase anchoring protein for GSK3B and PKA that regulates or facilitates their kinase activity towards their targets. The ternary complex enhances Wnt-induced signaling by facilitating the GSK3B- and PKA-induced phosphorylation of beta-catenin leading to beta-catenin degradation and stabilization respectively. Upon cAMP activation, the ternary complex contributes to neuroprotection against oxidative stress-induced apoptosis by facilitating the PKA-induced phosphorylation of DML1 and PKA-induced inactivation of GSK3B. During neurite outgrowth promotes neuron proliferation; while increases beta-catenin-induced transcriptional activity through GSK3B kinase activity inhibition, reduces N-cadherin level to promote cell cycle progression. May play a role in cleft palate formation and is required for postnatal life through modulation of the activity of GSK3B during development.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FZE6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZE6#function" }, { "database": "UniProtKB", "id": "ARBA00053873", "url": "https://www.uniprot.org/uniprotkb/ARBA00053873#function" }, { "database": "UniProtKB", "id": "A0A9J7G1I1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1I1#function" }, { "database": "UniProtKB", "id": "A0A9J7H0J5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0J5#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JRU2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRU2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus 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"sequence": { "sequence": "MGPGVQAEAAPRGPAGRSPQAAGGSRFAVAAACRFGAAVSQGDPMARVASRRVARTRPGGNGSLSGTRRPRPEAYTAPGRSGESMHEGPRADGGAAAAAAAAKRTPTLRDKFVVIYEARSRRRDAPGTFARPRRPSPAPRARAREQLAQAEVTPYCGAGKSGKRVRAGALPAANGRGGGGGGGGAGAASPAPDASVRGRGEEHGRSQPFKMKSV", "length": 214, "header": "tr|A0A9J7JRU2-1|A0A9J7JRU2_CRIGR Isoform 1 of Translation initiation factor IF-2 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC113835722 PE=4 SV=1 CANONICAL=A0A9J7JRU2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FZE6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZE6/entry", "sequence": { "sequence": "METDYNPVELSSMSGFEEGSELNGFEGTDMKDMRLEAEAVVNDVLFAVNSMFVSKSLRCADDVAYINVETKERNRYCLELTEAGLRVVGYAFDQVEDHLQTPYHETVYSLLDTLSPAYREAFGNALLQRLEALKRDGQS", "length": 139, "header": "tr|A0A9J7FZE6-1|A0A9J7JRU2_CRIGR Computationally mapped isoform of Translation initiation factor IF-2 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC113835722 PE=4 SV=1 CANONICAL=A0A9J7JRU2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G1H4-1", "url": 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GN=LOC113835722 PE=4 SV=1 CANONICAL=A0A9J7JRU2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H0J5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0J5/entry", "sequence": { "sequence": "MAAHTCNPRPPGWRMETDYNPVELSSMSGFEEGSELNGFEGTDMKDMRLEAEAVVNDVLFAVNSMFVSKSLRCADDVAYINVETKERNRYCLELTEAGLRVVGYAFDQVEDHLQTPYHETVYSLLDTLSPAYREAFGNALLQRLEALKRDGQS", "length": 153, "header": "tr|A0A9J7H0J5-1|A0A9J7H0J5_CRIGR Computationally mapped isoform of GSK3B-interacting protein OS=Cricetulus griseus OX=10029 GN=LOC113835722 PE=3 SV=1 CANONICAL=A0A9J7JRU2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JRU2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRU2/entry", "sequence": { "sequence": "MGPGVQAEAAPRGPAGRSPQAAGGSRFAVAAACRFGAAVSQGDPMARVASRRVARTRPGGNGSLSGTRRPRPEAYTAPGRSGESMHEGPRADGGAAAAAAAAKRTPTLRDKFVVIYEARSRRRDAPGTFARPRRPSPAPRARAREQLAQAEVTPYCGAGKSGKRVRAGALPAANGRGGGGGGGGAGAASPAPDASVRGRGEEHGRSQPFKMKSV", "length": 214, "header": "tr|A0A9J7JRU2-1|A0A9J7JRU2_CRIGR Isoform 1 of Translation initiation factor IF-2 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC113835722 PE=4 SV=1 CANONICAL=A0A9J7JRU2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JMJ7-1", "uniprot_ac": "A0A9J7JMJ7", "uniprot_id": "A0A9J7JMJ7_CRIGR", "mass": { "chemical_mass": 75579.0, "monoisotopic_mass": 75579.0 }, "refseq": { "ac": "XP_027279112", "name": "zinc finger protein 64 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027279112" }, "gene_names": [ { "name": "Zfp64", "type": "recommended", "evidence": [ { "id": "A0A9J7JMJ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMJ7" } ] }, { "name": "Zfp64", "type": "synonym", "evidence": [ { "id": "XP_027279112", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027279112" } ] } ], "protein_names": [ { "name": "Zinc finger protein 64 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7JMJ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMJ7/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 64 isoform X1", 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"MRVLRNEDSKILLTPTTQEPPSGLRVPGGTTVLVELTPDIHICGICKQQFSNLDAFVAHKQSGCQLTSTPVTAASTVQFVSEETVPAAQTQTTTRTISSETQTITVSAPEFVFEHGYQTYLPTESNENQTTTVISLPAKSRAKKPSTAPVQKRLGCCYPGCQFKTAYGMKDMERHLKIHTGDKPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDAPFQCWLCSAKFKISSDLKRHMRVHSGEKPFKCEFCNVRCTMKGNLKSHIRIKHSGNNFKCPHCDFVGDSKSALRKHSRLHQSEHPEKCPECSYSCSSKAALRVHERIHCTERPFKCNYCSFDTKQPSNLSKHMKKFHADMLKTQAPERKDTSRQSSRQVTKLDAKKTFHCDSCDASFMREDSLRSHKRQHNEYHEGKNPDVTVVQLHLDPGKQPAAPLTVGHLQVPLQSSQVSQFSEGRVKIIVGHQVPQTNTIVQAAAAAVNIVPPTLVAQAPEELPGNGRLQILRQVSLIAPPQPSGCPVEAGALSQPTVLLTTHDQTAGATLQQTLIPTTPAGTQEGTANQTFIASSGITCSDLEGLNALIQEGAAEVTVVSDGDQSIAVATTASPIFSSQQELPKQTFSIIHGAAHPALLCPADSIPD", "length": 689, "header": "tr|A0A9J7JMJ7-1|A0A9J7JMJ7_CRIGR Isoform 1 of Zinc finger protein 64 isoform X1 OS=Cricetulus griseus OX=10029 GN=Zfp64 PE=3 SV=1 CANONICAL=A0A9J7JMJ7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G7J2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7J2/entry", "sequence": { "sequence": "MNLSGEGDSYSESVQIPGGTTVLVELTPDIHICGICKQQFSNLDAFVAHKQSGCQLTSTPVTAASTVQFVSEETVPAAQTQTTTRTISSETQTITVSAPEFVFEHGYQTYLPTESNENQTTTVISLPAKSRAKKPSTAPVQKRLGCCYPGCQFKTAYGMKDMERHLKIHTGDKPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTASASDDKVPKPSDLSAEDSDTQQGPAVPVPLETKEQTATLGERTFNCCYPGCRFKTVHGMKDLDRHVRIHTGDKPHKCDFCDKCFSRKDNLTMHMRCHTSVKPHKCHLCDYAAVDSSSLKKHLRIHSDERPYKCQLCPYASRNSSQLTVHLRSHTGDTPFQCWLCNAKFKISSDLKRHMIVHSGEKPFKCEFCDVRCTMKANLKSHIRIKHTFKCLHCAFQGRDRADLLEHSRLHQADHPEKCPECSYSCSSPAALRVHSRVHCKDRPFKCDFCSFDTKRPSSLAKHIDRVHREGAKTENRAPQGEDGPTEGDPHPVAKTVTQRAFQCDKCGASFVRDDSLRCHRKQHSDWGDNKSSNLVTFPSESVVAGQLGTLEPSCDL", "length": 635, "header": "tr|A0A9J7G7J2-1|A0A9J7JMJ7_CRIGR Computationally mapped isoform of Zinc finger protein 64 isoform X1 OS=Cricetulus griseus OX=10029 GN=Zfp64 PE=3 SV=1 CANONICAL=A0A9J7JMJ7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G820-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G820/entry", "sequence": { "sequence": "MRVLRNEDSKILLTPTTQEPPSGLRVPGGTTVLVELTPDIHICGICKQQFSNLDAFVAHKQSGCQLTSTPVTAASTVQFVSEETVPAAQTQTTTRTISSETQTITVSAPEFVFEHGYQTYLPTESNENQTTTVISLPAKSRAKKPSTAPVQKRLGCCYPGCQFKTAYGMKDMERHLKIHTGDKPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTASASDDKVPKPSDLSAEDSDTQQGPAVPVPLETKEQTATLGERTFNCCYPGCRFKTVHGMKDLDRHVRIHTGDKPHKCDFCDKCFSRKDNLTMHMRCHTSVKPHKCHLCDYAAVDSSSLKKHLRIHSDERPYKCQLCPYASRNSSQLTVHLRSHTGDTPFQCWLCNAKFKISSDLKRHMIVHSGEKPFKCEFCDVRCTMKANLKSHIRIKHTFKCLHCAFQGRDRADLLEHSRLHQADHPEKCPECSYSCSSPAALRVHSRVHCKDRPFKCDFCSFDTKRPSSLAKHIDRVHREGAKTENRAPQGEDGPTEGDPHPVAKTVTQRAFQCDKCGASFVRDDSLRCHRKQHSDWGDNKSSNLVTFPSESVVAGQLGTLEPSCDL", "length": 645, "header": "tr|A0A9J7G820-1|A0A9J7JMJ7_CRIGR Computationally mapped isoform of Zinc finger protein 64 isoform X1 OS=Cricetulus griseus OX=10029 GN=Zfp64 PE=3 SV=1 CANONICAL=A0A9J7JMJ7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G8H1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G8H1/entry", "sequence": { "sequence": "MNLSGEGDSYSESVQRGTTVLVELTPDIHICGICKQQFSNLDAFVAHKQSGCQLTSTPVTAASTVQFVSEETVPAAQTQTTTRTISSETQTITVSAPEFVFEHGYQTYLPTESNENQTTTVISLPAKSRAKKPSTAPVQKRLGCCYPGCQFKTAYGMKDMERHLKIHTGDKPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDAPFQCWLCSAKFKISSDLKRHMRVHSGEKPFKCEFCNVRCTMKGNLKSHIRIKHSGNNFKCPHCDFVGDSKSALRKHSRLHQSEHPEKCPECSYSCSSKAALRVHERIHCTERPFKCNYCSFDTKQPSNLSKHMKKFHADMLKTQAPERKDTSRQSSRQVTKLDAKKTFHCDSCDASFMREDSLRSHKRQHNEYHEGKNPDVTVVQLHLDPGKQPAAPLTVGHLQVPLQSSQVSQFSEGRVKIIVGHQVPQTNTIVQAAAAAVNIVPPTLVAQAPEELPGNGRLQILRQVSLIAPPQPSGCPVEAGALSQPTVLLTTHDQTAGATLQQTLIPTTPAGTQEGTANQTFIASSGITCSDLEGLNALIQEGAAEVTVVSDGDQSIAVATTASPIFSSQQELPKQTFSIIHGAAHPALLCPADSIPD", "length": 677, "header": "tr|A0A9J7G8H1-1|A0A9J7JMJ7_CRIGR Computationally mapped isoform of Zinc finger protein 64 isoform X1 OS=Cricetulus griseus OX=10029 GN=Zfp64 PE=3 SV=1 CANONICAL=A0A9J7JMJ7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GAI7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAI7/entry", "sequence": { "sequence": "MSRRKQAKPQHLRSLEPQSECNEPGRVAPRGAGEPASASDDKVPKPSDLSAEDSDTQQGPAVPVPLETKEQTATLGERTFNCCYPGCRFKTVHGMKDLDRHVRIHTGDKPHKCDFCDKCFSRKDNLTMHMRCHTSVKPHKCHLCDYAAVDSSSLKKHLRIHSDERPYKCQLCPYASRNSSQLTVHLRSHTGDTPFQCWLCNAKFKISSDLKRHMIVHSGEKPFKCEFCDVRCTMKANLKSHIRIKHTFKCLHCAFQGRDRADLLEHSRLHQADHPEKCPECSYSCSSPAALRVHSRVHCKDRPFKCDFCSFDTKRPSSLAKHIDRVHREGAKTENRAPQGEDGPTEGDPHPVAKTVTQRAFQCDKCGASFVRDDSLRCHRKQHSDWGDNKSSNLVTFPSESVVAGQLGTLEPSCDL", "length": 416, "header": "tr|A0A9J7GAI7-1|A0A9J7JMJ7_CRIGR Computationally mapped isoform of Zinc finger protein 64 isoform X1 OS=Cricetulus griseus OX=10029 GN=Zfp64 PE=3 SV=1 CANONICAL=A0A9J7JMJ7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GC33-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GC33/entry", "sequence": { "sequence": "MRVLRNEDSKILLTPTTQEPPSGLRVPGGTTVLVELTPDIHICGICKQQFSNLDAFVAHKQSGCQLTSTPVTAASTVQFVSEETVPAAQTQTTTRTISSETQTITVSAPEFVFEHGYQTYLPTESNENQTTTVISLPAKSRAKKPSTAPVQKRLGCCYPGCQFKTAYGMKDMERHLKIHTGDAPFQCWLCSAKFKISSDLKRHMRVHSGEKPFKCEFCNVRCTMKGNLKSHIRIKHSGNNFKCPHCDFVGDSKSALRKHSRLHQSEHPEKCPECSYSCSSKAALRVHERIHCTERPFKCNYCSFDTKQPSNLSKHMKKFHADMLKTQAPERKDTSRQSSRQVTKLDAKKTFHCDSCDASFMREDSLRSHKRQHNEYHEGKNPDVTVVQLHLDPGKQPAAPLTVGHLQVPLQSSQVSQFSEGRVKIIVGHQVPQTNTIVQAAAAAVNIVPPTLVAQAPEELPGNGRLQILRQVSLIAPPQPSGCPVEAGALSQPTVLLTTHDQTAGATLQQTLIPTTPAGTQEGTANQTFIASSGITCSDLEGLNALIQEGAAEVTVVSDGDQSIAVATTASPIFSSQQELPKQTFSIIHGAAHPALLCPADSIPD", "length": 605, "header": "tr|A0A9J7GC33-1|A0A9J7JMJ7_CRIGR Computationally mapped isoform of Zinc finger protein 64 isoform X1 OS=Cricetulus griseus OX=10029 GN=Zfp64 PE=3 SV=1 CANONICAL=A0A9J7JMJ7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H186-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H186/entry", "sequence": { "sequence": "MRVLRNEDSKILLTPTTQEPPSGLRVPGGTTVLVELTPDIHICGICKQQFSNLDAFVAHKQSGCQLTSTPVTAASTVQFVSEETVPAAQTQTTTRTISSETQTITVSAPEFVFEHGYQTYLPTESNENQTTTVISLPAKSRAKKPSTAPVQKRLGCCYPGCQFKTAYGMKDMERHLKIHTASASDDKVPKPSDLSAEDSDTQQGPAVPVPLETKEQTATLGERTFNCCYPGCRFKTVHGMKDLDRHVRIHTGDKPHKCDFCDKCFSRKDNLTMHMRCHTSVKPHKCHLCDYAAVDSSSLKKHLRIHSDERPYKCQLCPYASRNSSQLTVHLRSHTGDTPFQCWLCNAKFKISSDLKRHMIVHSGEKPFKCEFCDVRCTMKANLKSHIRIKHTFKCLHCAFQGRDRADLLEHSRLHQADHPEKCPECSYSCSSPAALRVHSRVHCKDRPFKCDFCSFDTKRPSSLAKHIDRVHREGAKTENRAPQGEDGPTEGDPHPVAKTVTQRAFQCDKCGASFVRDDSLRCHRKQHSDWGDNKSSNLVTFPSESVVAGQLGTLEPSCDL", "length": 561, "header": "tr|A0A9J7H186-1|A0A9J7H186_CRIGR Computationally mapped isoform of Zinc finger protein 64 isoform X10 OS=Cricetulus griseus OX=10029 GN=Zfp64 PE=3 SV=1 CANONICAL=A0A9J7JMJ7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H470-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H470/entry", "sequence": { "sequence": "MRVLRNEDSKILLTPTTQEPPSGLRVPGGTTVLVELTPDIHICGICKQQFSNLDAFVAHKQSGCQLTSTPVTAASTVQFVSEETVPAAQTQTTTRTISSETQTITVSAPEFVFEHGYQTYLPTESNENQTTTVISLPAKSRAKKPSTAPVQKRLGCCYPGCQFKTAYGMKDMERHLKIHTGDKPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTASASDDKVPKPSDLSAEDSDTQQGPAVPVPLETKEQTATLGERTFNCCYPGDKPHKCDFCDKCFSRKDNLTMHMRCHTSVKPHKCHLCDYAAVDSSSLKKHLRIHSDERPYKCQLCPYASRNSSQLTVHLRSHTGDTPFQCWLCNAKFKISSDLKRHMIVHSGEKPFKCEFCDVRCTMKANLKSHIRIKHTFKCLHCAFQGRDRADLLEHSRLHQADHPEKCPECSYSCSSPAALRVHSRVHCKDRPFKCDFCSFDTKRPSSLAKHIDRVHREGAKTENRAPQGEDGPTEGDPHPVAKTVTQRAFQCDKCGASFVRDDSLRCHRKQHSDWGDNKSSNLVTFPSESVVAGQLGTLEPSCDL", "length": 624, "header": "tr|A0A9J7H470-1|A0A9J7H470_CRIGR Computationally mapped isoform of Zinc finger protein 64 OS=Cricetulus griseus OX=10029 GN=Zfp64 PE=3 SV=1 CANONICAL=A0A9J7JMJ7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JMJ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMJ7/entry", "sequence": { "sequence": "MRVLRNEDSKILLTPTTQEPPSGLRVPGGTTVLVELTPDIHICGICKQQFSNLDAFVAHKQSGCQLTSTPVTAASTVQFVSEETVPAAQTQTTTRTISSETQTITVSAPEFVFEHGYQTYLPTESNENQTTTVISLPAKSRAKKPSTAPVQKRLGCCYPGCQFKTAYGMKDMERHLKIHTGDKPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDAPFQCWLCSAKFKISSDLKRHMRVHSGEKPFKCEFCNVRCTMKGNLKSHIRIKHSGNNFKCPHCDFVGDSKSALRKHSRLHQSEHPEKCPECSYSCSSKAALRVHERIHCTERPFKCNYCSFDTKQPSNLSKHMKKFHADMLKTQAPERKDTSRQSSRQVTKLDAKKTFHCDSCDASFMREDSLRSHKRQHNEYHEGKNPDVTVVQLHLDPGKQPAAPLTVGHLQVPLQSSQVSQFSEGRVKIIVGHQVPQTNTIVQAAAAAVNIVPPTLVAQAPEELPGNGRLQILRQVSLIAPPQPSGCPVEAGALSQPTVLLTTHDQTAGATLQQTLIPTTPAGTQEGTANQTFIASSGITCSDLEGLNALIQEGAAEVTVVSDGDQSIAVATTASPIFSSQQELPKQTFSIIHGAAHPALLCPADSIPD", "length": 689, "header": "tr|A0A9J7JMJ7-1|A0A9J7JMJ7_CRIGR Isoform 1 of Zinc finger protein 64 isoform X1 OS=Cricetulus griseus OX=10029 GN=Zfp64 PE=3 SV=1 CANONICAL=A0A9J7JMJ7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JUU0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUU0/entry", "sequence": { "sequence": "MNLSGEGDSYSESVQIPGGTTVLVELTPDIHICGICKQQFSNLDAFVAHKQSGCQLTSTPVTAASTVQFVSEETVPAAQTQTTTRTISSETQTITVSAPEFVFEHGYQTYLPTESNENQTTTVISLPAKSRAKKPSTAPVQKRLGCCYPGCQFKTAYGMKDMERHLKIHTGDKPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDAPFQCWLCSAKFKISSDLKRHMRVHSGEKPFKCEFCNVRCTMKGNLKSHIRIKHSGNNFKCPHCDFVGDSKSALRKHSRLHQSEHPEKCPECSYSCSSKAALRVHERIHCTERPFKCNYCSFDTKQPSNLSKHMKKFHADMLKTQAPERKDTSRQSSRQVTKLDAKKTFHCDSCDASFMREDSLRSHKRQHNEYHEGKNPDVTVVQLHLDPGKQPAAPLTVGHLQVPLQSSQVSQFSEGRVKIIVGHQVPQTNTIVQAAAAAVNIVPPTLVAQAPEELPGNGRLQILRQVSLIAPPQPSGCPVEAGALSQPTVLLTTHDQTAGATLQQTLIPTTPAGTQEGTANQTFIASSGITCSDLEGLNALIQEGAAEVTVVSDGDQSIAVATTASPIFSSQQELPKQTFSIIHGAAHPALLCPADSIPD", "length": 679, "header": "tr|A0A9J7JUU0-1|A0A9J7JUU0_CRIGR Computationally mapped isoform of Zinc finger protein 64 isoform X3 OS=Cricetulus griseus OX=10029 GN=Zfp64 PE=3 SV=1 CANONICAL=A0A9J7JMJ7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JW96-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JW96/entry", "sequence": { "sequence": "MRVLRNEDSKILLTPTTQEPPSGLRGGTTVLVELTPDIHICGICKQQFSNLDAFVAHKQSGCQLTSTPVTAASTVQFVSEETVPAAQTQTTTRTISSETQTITVSAPEFVFEHGYQTYLPTESNENQTTTVISLPAKSRAKKPSTAPVQKRLGCCYPGCQFKTAYGMKDMERHLKIHTGDKPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDAPFQCWLCSAKFKISSDLKRHMRVHSGEKPFKCEFCNVRCTMKGNLKSHIRIKHSGNNFKCPHCDFVGDSKSALRKHSRLHQSEHPEKCPECSYSCSSKAALRVHERIHCTERPFKCNYCSFDTKQPSNLSKHMKKFHADMLKTQAPERKDTSRQSSRQVTKLDAKKTFHCDSCDASFMREDSLRSHKRQHNEYHEGKNPDVTVVQLHLDPGKQPAAPLTVGHLQVPLQSSQVSQFSEGRVKIIVGHQVPQTNTIVQAAAAAVNIVPPTLVAQAPEELPGNGRLQILRQVSLIAPPQPSGCPVEAGALSQPTVLLTTHDQTAGATLQQTLIPTTPAGTQEGTANQTFIASSGITCSDLEGLNALIQEGAAEVTVVSDGDQSIAVATTASPIFSSQQELPKQTFSIIHGAAHPALLCPADSIPD", "length": 687, "header": "tr|A0A9J7JW96-1|A0A9J7JW96_CRIGR Computationally mapped isoform of Zinc finger protein 64 isoform X2 OS=Cricetulus griseus OX=10029 GN=Zfp64 PE=3 SV=1 CANONICAL=A0A9J7JMJ7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JWF0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWF0/entry", "sequence": { "sequence": "MISAPEFVFEHGYQTYLPTESNENQTTTVISLPAKSRAKKPSTAPVQKRLGCCYPGCQFKTAYGMKDMERHLKIHTGDKPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDAPFQCWLCSAKFKISSDLKRHMRVHSGEKPFKCEFCNVRCTMKGNLKSHIRIKHSGNNFKCPHCDFVGDSKSALRKHSRLHQSEHPEKCPECSYSCSSKAALRVHERIHCTERPFKCNYCSFDTKQPSNLSKHMKKFHADMLKTQAPERKDTSRQSSRQVTKLDAKKTFHCDSCDASFMREDSLRSHKRQHNEYHEGKNPDVTVVQLHLDPGKQPAAPLTVGHLQVPLQSSQVSQFSEGRVKIIVGHQVPQTNTIVQAAAAAVNIVPPTLVAQAPEELPGNGRLQILRQVSLIAPPQPSGCPVEAGALSQPTVLLTTHDQTAGATLQQTLIPTTPAGTQEGTANQTFIASSGITCSDLEGLNALIQEGAAEVTVVSDGDQSIAVATTASPIFSSQQELPKQTFSIIHGAAHPALLCPADSIPD", "length": 585, "header": "tr|A0A9J7JWF0-1|A0A9J7JWF0_CRIGR Computationally mapped isoform of Zinc finger protein 64 isoform X9 OS=Cricetulus griseus OX=10029 GN=Zfp64 PE=3 SV=1 CANONICAL=A0A9J7JMJ7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7J2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7J2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7J2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7J2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100753579", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753579", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JMJ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMJ7" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JMJ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMJ7" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JMJ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMJ7" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JMJ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMJ7" } ], "pmid": "" }, { "name": "sequence-specific DNA binding", "id": "GO:0043565", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043565", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JMJ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMJ7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JMJ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMJ7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JMJ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMJ7" } ], "pmid": "" }, { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JMJ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMJ7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 128, "end_pos": 130, "annotation": "n_glycosylation_sequon" }, { "start_pos": 252, "end_pos": 254, "annotation": "n_glycosylation_sequon" }, { "start_pos": 395, "end_pos": 397, "annotation": "n_glycosylation_sequon" }, { "start_pos": 610, "end_pos": 612, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JMJ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMJ7" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 185, "end_pos": 212, "start_aa": "His", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], 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"XP_016826908", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016826908" } ] } ], "protein_names": [ { "name": "MAGUK p55 subfamily member 6 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_016826908", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016826908" }, { "id": "A0A9J7JR40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JR40/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613695.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016826908", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016826908" } ] }, { "annotation": "Postsynaptic MAGUK scaffold protein that links CADM1 cell adhesion molecules to core components of the postsynaptic density. In CA1 pyramidal neurons, required for synaptic KCNN2-containing channel function and long-term potentiation expression. Seems to negatively regulate SRC function in epithelial cells.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K0J5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0J5#function" }, { "database": "UniProtKB", "id": "ARBA00054812", "url": "https://www.uniprot.org/uniprotkb/ARBA00054812#function" }, { "database": "UniProtKB", "id": "A0A9J7GFQ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFQ7#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JR40", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JR40" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Mpp6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JR40", "locus": {} } ], "crossref": [ { "id": "A0A9J7JR40", "url": 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"InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036028", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036028", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036034", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036034", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050716", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050716", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100757964", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757964", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GFQ7", "url": "https://www.orthodb.org/?gene=A0A9J7GFQ7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JR40", "url": "https://www.orthodb.org/?gene=A0A9J7JR40", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23122", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23122", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00595", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00595", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00625", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00625", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02828", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02828", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07653", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07653", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016826908", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016826908", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GFQ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFQ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GFQ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFQ7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JR40", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JR40", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JR40-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JR40-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K0J5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0J5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K0J5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0J5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQQVLENLTELPSSTGAEEIDLIFLKGIMENPIVKSLAKAHERLEDSKLEAVSDNNLELVNEILEDISPLISVDENVAELVGILKEPHFQSLLEAHDIVASKCYDSPPSSPEMNNSSLNNQLLPVDAIRILGIHKRAGEPLGVTFRVENNDLVIARILHGGMIDRQGLLHVGDIIKEVNGHEVGNNPKELQELLKNISGSVTLKILPSYRDTVTPQQVFVKCHFDYNPFNDNLIPCKEAGLKFSKGEILQIVNREDPNWWQASHVKEGGSAGLIPSQFLEEKRKAFVRRDWDNSGPFCGTISNKKKKKMMYLTTRNAEFDRHEIQIYEEVAKMPPFQRKTLVLIGAQGVGRRSLKNRFIVLNPARFGTTVPFTSRKPREDEKDGQAYKFVSRSEMEADIKAGKYLEHGEYEGNLYGTKIDSILEVVQTGRTCILDVNPQALKVLRTSEFMPYVVFIAAPELETLRAMHKAVVDAGITTKLLTDSDLKKTVDESARIQRAYNHYFDLIIVNDNLDKAFEKLQTAIEKLRMEPQWVPISWVY", "length": 540, "header": "tr|A0A9J7JR40-1|A0A9J7JR40_CRIGR Isoform 1 of MAGUK p55 subfamily member 6 isoform X2 OS=Cricetulus griseus OX=10029 GN=Mpp6 PE=3 SV=1 CANONICAL=A0A9J7JR40-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GFQ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFQ7/entry", "sequence": { "sequence": "MQQVLENLTELPSSTGAEEIDLIFLKGIMENPIVKSLAKAHERLEDSKLEAVSDNNLELVNEILEDISPLISVDENVAELVGILKEPHFQSLLEAHDIVASKCYDSPPSSPEMNNSSLNNQLLPVDAIRILGIHKRAGEPLGVTFRVENNDLVIARILHGGMIDRQGLLHVGDIIKEVNGHEVFVKCHFDYNPFNDNLIPCKEAGLKFSKGEILQIVNREDPNWWQASHVKEGGSAGLIPSQFLEEKRKAFVRRDWDNSGPFCGTISNKKKKKMMYLTTRNAEFDRHEIQIYEEVAKMPPFQRKTLVLIGAQGVGRRSLKNRFIVLNPARFGTTVPFTSRKPREDEKDGQAYKFVSRSEMEADIKAGKYLEHGEYEGNLYGTKIDSILEVVQTGRTCILDVNPQALKVLRTSEFMPYVVFIAAPELETLRAMHKAVVDAGITTKLLTDSDLKKTVDESARIQRAYNHYFDLIIVNDNLDKAFEKLQTAIEKLRMEPQWVPISWVY", "length": 505, "header": "tr|A0A9J7GFQ7-1|A0A9J7GFQ7_CRIGR Computationally mapped isoform of MAGUK p55 subfamily member 2 OS=Cricetulus griseus OX=10029 GN=Mpp6 PE=3 SV=1 CANONICAL=A0A9J7JR40-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JR40-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JR40/entry", "sequence": { "sequence": "MQQVLENLTELPSSTGAEEIDLIFLKGIMENPIVKSLAKAHERLEDSKLEAVSDNNLELVNEILEDISPLISVDENVAELVGILKEPHFQSLLEAHDIVASKCYDSPPSSPEMNNSSLNNQLLPVDAIRILGIHKRAGEPLGVTFRVENNDLVIARILHGGMIDRQGLLHVGDIIKEVNGHEVGNNPKELQELLKNISGSVTLKILPSYRDTVTPQQVFVKCHFDYNPFNDNLIPCKEAGLKFSKGEILQIVNREDPNWWQASHVKEGGSAGLIPSQFLEEKRKAFVRRDWDNSGPFCGTISNKKKKKMMYLTTRNAEFDRHEIQIYEEVAKMPPFQRKTLVLIGAQGVGRRSLKNRFIVLNPARFGTTVPFTSRKPREDEKDGQAYKFVSRSEMEADIKAGKYLEHGEYEGNLYGTKIDSILEVVQTGRTCILDVNPQALKVLRTSEFMPYVVFIAAPELETLRAMHKAVVDAGITTKLLTDSDLKKTVDESARIQRAYNHYFDLIIVNDNLDKAFEKLQTAIEKLRMEPQWVPISWVY", "length": 540, "header": "tr|A0A9J7JR40-1|A0A9J7JR40_CRIGR Isoform 1 of MAGUK p55 subfamily member 6 isoform X2 OS=Cricetulus griseus OX=10029 GN=Mpp6 PE=3 SV=1 CANONICAL=A0A9J7JR40-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K0J5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0J5/entry", "sequence": { "sequence": "MQQVLENLTELPSSTGAEEIDLIFLKGIMENPIVKSLAKAHERLEDSKLEAVSDNNLELVNEILEDISPLISVDENVAELVGILKEPHFQSLLEAHDIVASKCYDSPPSSPEMNNSSLNNQLLPVDAIRILGIHKRAGEPLGVTFRVENNDLVIARILHGGMIDRQGLLHVGDIIKEVNGHESYTNMERHPAHIRQVFVKCHFDYNPFNDNLIPCKEAGLKFSKGEILQIVNREDPNWWQASHVKEGGSAGLIPSQFLEEKRKAFVRRDWDNSGPFCGTISNKKKKKMMYLTTRNAEFDRHEIQIYEEVAKMPPFQRKTLVLIGAQGVGRRSLKNRFIVLNPARFGTTVPFTSRKPREDEKDGQAYKFVSRSEMEADIKAGKYLEHGEYEGNLYGTKIDSILEVVQTGRTCILDVNPQALKVLRTSEFMPYVVFIAAPELETLRAMHKAVVDAGITTKLLTDSDLKKTVDESARIQRAYNHYFDLIIVNDNLDKAFEKLQTAIEKLRMEPQWVPISWVY", "length": 519, "header": "tr|A0A9J7K0J5-1|A0A9J7JR40_CRIGR Computationally mapped isoform of MAGUK p55 subfamily member 6 isoform X2 OS=Cricetulus griseus OX=10029 GN=Mpp6 PE=3 SV=1 CANONICAL=A0A9J7JR40-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K0J5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0J5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K0J5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0J5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100757964", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757964", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural constituent of postsynaptic density", "id": "GO:0098919", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098919", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JR40", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JR40" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JR40", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JR40" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 114, "end_pos": 116, "annotation": "n_glycosylation_sequon" }, { "start_pos": 115, "end_pos": 117, "annotation": "n_glycosylation_sequon" }, { "start_pos": 196, "end_pos": 198, "annotation": "n_glycosylation_sequon" }, { "start_pos": 7, "end_pos": 9, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JR40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JR40" }, { "id": "PS50052", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50052" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Guanylate kinase-like", "eco_id": "ECO_0000259", "start_pos": 338, "end_pos": 525, "start_aa": "Arg", "end_aa": "Glu", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7JR40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JR40" }, { "id": "PS51022", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51022" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L27", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 48, "start_aa": "Met", "end_aa": "Lys", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7JR40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JR40" }, { "id": "PS50106", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50106" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PDZ", "eco_id": "ECO_0000259", "start_pos": 130, "end_pos": 209, "start_aa": "Ile", "end_aa": "Tyr", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7JR40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JR40" }, { "id": "PS50002", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50002" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SH3", "eco_id": "ECO_0000259", "start_pos": 215, "end_pos": 284, "start_aa": "Pro", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 114, "end_pos": 116 }, { "start_pos": 115, "end_pos": 117 }, { "start_pos": 196, "end_pos": 198 }, { "start_pos": 7, "end_pos": 9 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", 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"field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JRR8-1", "uniprot_ac": "A0A9J7JRR8", "uniprot_id": "A0A9J7JRR8_CRIGR", "mass": { "chemical_mass": 96217.0, "monoisotopic_mass": 96217.0 }, "refseq": { "ac": "XP_027286562", "name": "leukocyte receptor cluster member 8 homolog isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286562" }, "gene_names": [ { "name": "LOC100774417", "type": "recommended", "evidence": [ { "id": "A0A9J7JRR8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRR8" } ] }, { "name": "LOC100774417", "type": "synonym", "evidence": [ { "id": "XP_027286562", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286562" } ] } ], "protein_names": [ { "name": "Leukocyte receptor cluster member 8 homolog isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7JRR8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRR8/entry#names_and_taxonomy" } ] }, { "name": "leukocyte receptor cluster member 8 homolog isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027286562", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286562" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027286562", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286562" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JRR8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRR8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100774417", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRR8", "locus": {} } ], "crossref": [ { "id": "A0A9J7JRR8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JRR8", "database": "AlphaFoldDB", "categories": [] }, { "id": "100774417", "url": "https://www.ncbi.nlm.nih.gov/gene/100774417", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000717", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000717", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005062", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005062", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045107", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045107", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100774417", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774417", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JRR8", "url": "https://www.orthodb.org/?gene=A0A9J7JRR8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12436", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12436", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12436:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12436:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03399", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03399", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027286562", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286562", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A061HVM3", "url": "https://www.uniprot.org/uniprotkb/A0A061HVM3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A061HVM3-1", "url": "https://www.uniprot.org/uniprotkb/A0A061HVM3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GI76", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI76", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GI76-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI76-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JRR8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRR8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JRR8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRR8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JZP1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZP1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JZP1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZP1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K182", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K182", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K182-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K182-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAANVGDQRSADWSSQYGMVAGASRENGMETPMHENPEWEKARQALASISKAGAASSSKASSSGPVASAQYVSQAEATALQQQQQQYYQWYQQYNYAYPYSYYYPMSMYQSYGSPSQYGMASSYGSAAAQQPSAPQHQGTLNQPPVPGMDESMAYQASAQQLPAAQPPQPSNPQHGTHGLSNGPQPGTAPATQHSQAGAPTGQTYGPHSYSEPAKPKKGQQLWTRMKPAPGTGGLKFNIQKRPFAVTNQNFSSNAENQHSSFGSQPSSEKAQNHSGPSGRGNLSGKPDDWPQDMKEYVERCFTACESEEDKDRTEKLLKEVLQARLQDGSAYTIDWSREPLPGQSWAWSLSCTTVAELPGLTREPVAESPKKKRWEAPSSLHPPRGAGSVTRGGGAQSQRGTPGAGGAGRARGSSFAKFGNRNVFMKDNSSSSSTDSRSRSSSRSPTRHFRRSDSHSDSDSSYSGNECHPVGRRNPPPKGRGGRGAHMDRGRGRAQRGKRHDLAPTKRSRKKMAALECEDPERELKKQKRAARFQHGHSRRLRLEPLVLQMSNLESSGADPDWQELQIVGTCPDITKHYLRLTCAPDPSTVRPVAVLKKSLCMVKSHWKEKQDYAFACEQMKSIRQDLTVQGIRTEFTVEVYETHARIALEKGDHEEFNQCQTQLKSLYAENLAGNVGEFTAYRILYYIFTKNSGDITTELAYLTRELKADPCVSHALALRAAWALGNYHRFFRLYCHAPCMSGYLVDKFADRERKAALKAMIKTYVALRSAAFCAVALPRPLHILVSLRCLCWSPRPHLPHTPEPPCSPQSQPLSVSAFLPVFRHCSWCHVLLFSARLCADHLGTWFIFPFLGFRRPAGSSLLLFFLTC", "length": 870, "header": "tr|A0A9J7JRR8-1|A0A9J7JRR8_CRIGR Isoform 1 of Leukocyte receptor cluster member 8 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100774417 PE=4 SV=1 CANONICAL=A0A9J7JRR8-1" }, "isoforms": [ { "isoform_ac": "A0A061HVM3-1", "url": "https://www.uniprot.org/uniprotkb/A0A061HVM3/entry", "sequence": { "sequence": "MAANVGDQRSADWSSQYGMVAGASRENGMETPMHENPEWEKARQALASISKAGAASSSKASSSGPVASAQYVSQAEATALQQQQQQYYQWYQQYNYAYPYSYYYPMSMYQSYGSPSQYGMASSYGSAAAQQPSAPQHQGTLNQPPVPGMDESMAYQASAQQLPAAQPPQPSNPQHGTHGLSNGPQPGTAPATQHSQAGAPTGQTYGPHSYSEPAKPKKGQQLWTRMKPAPGTGGLKFNIQKRPFAVTNQNFSSNAENQHSSFGSQPSSEKAQNHSGPSGRGNLSGKPDDWPQDMKEYVERCFTACESEEDKDRTEKLLKEVLQARLQDGSAYTIDWSREPLPGLTREPVAESPKKKRWEAPSSLHPPRGAGSVTRGGGAQSQRGTPGAGGAGRARGSSFAKFGNRNVFMKDNSSSSSTDSRSRSSSRSPTRHFRRSDSHSDSDSSYSGNECHPVGRRNPPPKGRGGRGAHMDRGRGRAQRGKRHDLAPTKRSRKKMAALECEDPERELKKQKRAARFQHGHSRRLRLEPLVLQMSNLESSGADPDWQELQIVGTCPDITKHYLRLTCAPDPSTVRPVAVLKKSLCMVKSHWKEKQDYAFACEQMKSIRQDLTVQGIRTEFTVEVYETHARIALEKGDHEEFNQCQTQLKSLYAENLAGNVGEFTAYRILYYIFTKNSGDITTELAYLTRELKADPCVSHALALRAAWALGNYHRFFRLYCHAPCMSGYLVDKFADRERKAALKAMIKTFRPALPVSYLQAELAFEGEAACRAFLEPLGLSYTGPDNSSVDCRLSLAQLPAF", "length": 801, "header": "tr|A0A061HVM3-1|A0A9J7JRR8_CRIGR Computationally mapped isoform of Leukocyte receptor cluster member 8 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100774417 PE=4 SV=1 CANONICAL=A0A9J7JRR8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GI76-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI76/entry", "sequence": { "sequence": "MAANVGDQRSADWSSQYGMVAGASRENGMETPMHENPEWEKARQALASISKAGAASSSKASSSGPVASAQYVSQAEATALQQQQQQYYQWYQQYNYAYPYSYYYPMSMYQSYGSPSQYGMASSYGSAAAQQPSAPQHQGTLNQPPVPGMDESMAYQASAQQLPAAQPPQPSNPQHGTHGLSNGPQPGTAPATQHSQAGAPTGQTYGPHSYSEPAKPKKGQQLWTRMKPAPGTGGLKFNIQKRPFAVTNQNFSSNAENQHSSFGSQPSSEKAQNHSGPSGRGNLSGKPDDWPQDMKEYVERCFTACESEEDKDRTEKLLKEVLQARLQDGSAYTIDWSREPLPGQSWAWSLSCTTVAELPGLTREPVAESPKKKRWEAPSSLHPPRGAGSVTRGGGAQSQRGTPGAGGAGRARGSSFAKFGNRNVFMKDNSSSSSTDSRSRSSSRSPTRHFRRSDSHSDSDSSYSGNECHPVGRRNPPPKGRGGRGAHMDRGRGRAQRGKRHDLAPTKRSRKKMAALECEDPERELKKQKRAARFQHGHSRRLRLEPLVLQMSNLESSGADPDWQELQIVGTCPDITKHYLRLTCAPDPSTVRPVAVLKKSLCMVKSHWKEKQDYAFACEQMKSIRQDLTVQGIRTEFTVEVYETHARIALEKGDHEEFNQCQTQLKSLYAENLAGNVGEFTAYRILYYIFTKNSGDITTELAYLTRELKADPCVSHALALRAAWALGNYHRFFRLYCHAPCMSGYLVDKFADRERKAALKAMIKTFRPALPVSYLQAELAFEGEAACRAFLEPLGLSYTGPDNSSVDCRLSLAQLPAF", "length": 818, "header": "tr|A0A9J7GI76-1|A0A9J7JRR8_CRIGR Computationally mapped isoform of Leukocyte receptor cluster member 8 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100774417 PE=4 SV=1 CANONICAL=A0A9J7JRR8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JRR8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRR8/entry", "sequence": { "sequence": "MAANVGDQRSADWSSQYGMVAGASRENGMETPMHENPEWEKARQALASISKAGAASSSKASSSGPVASAQYVSQAEATALQQQQQQYYQWYQQYNYAYPYSYYYPMSMYQSYGSPSQYGMASSYGSAAAQQPSAPQHQGTLNQPPVPGMDESMAYQASAQQLPAAQPPQPSNPQHGTHGLSNGPQPGTAPATQHSQAGAPTGQTYGPHSYSEPAKPKKGQQLWTRMKPAPGTGGLKFNIQKRPFAVTNQNFSSNAENQHSSFGSQPSSEKAQNHSGPSGRGNLSGKPDDWPQDMKEYVERCFTACESEEDKDRTEKLLKEVLQARLQDGSAYTIDWSREPLPGQSWAWSLSCTTVAELPGLTREPVAESPKKKRWEAPSSLHPPRGAGSVTRGGGAQSQRGTPGAGGAGRARGSSFAKFGNRNVFMKDNSSSSSTDSRSRSSSRSPTRHFRRSDSHSDSDSSYSGNECHPVGRRNPPPKGRGGRGAHMDRGRGRAQRGKRHDLAPTKRSRKKMAALECEDPERELKKQKRAARFQHGHSRRLRLEPLVLQMSNLESSGADPDWQELQIVGTCPDITKHYLRLTCAPDPSTVRPVAVLKKSLCMVKSHWKEKQDYAFACEQMKSIRQDLTVQGIRTEFTVEVYETHARIALEKGDHEEFNQCQTQLKSLYAENLAGNVGEFTAYRILYYIFTKNSGDITTELAYLTRELKADPCVSHALALRAAWALGNYHRFFRLYCHAPCMSGYLVDKFADRERKAALKAMIKTYVALRSAAFCAVALPRPLHILVSLRCLCWSPRPHLPHTPEPPCSPQSQPLSVSAFLPVFRHCSWCHVLLFSARLCADHLGTWFIFPFLGFRRPAGSSLLLFFLTC", "length": 870, "header": "tr|A0A9J7JRR8-1|A0A9J7JRR8_CRIGR Isoform 1 of Leukocyte receptor cluster member 8 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100774417 PE=4 SV=1 CANONICAL=A0A9J7JRR8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JZP1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZP1/entry", "sequence": { "sequence": "MAANVGDQRSADWSSQYGMVAGASRENGMETPMHENPEWEKARQALASISKAGAASSSKASSSGPVASAQYVSQAEATALQQQQQQYYQWYQQYNYAYPYSYYYPMPPVPGMDESMAYQASAQQLPAAQPPQPSNPQHGTHGLSNGPQPGTAPATQHSQAGAPTGQTYGPHSYSEPAKPKKGQQLWTRMKPAPGTGGLKFNIQKRPFAVTNQNFSSNAENQHSSFGSQPSSEKAQNHSGPSGRGNLSGKPDDWPQDMKEYVERCFTACESEEDKDRTEKLLKEVLQARLQDGSAYTIDWSREPLPGQSWAWSLSCTTVAELPGLTREPVAESPKKKRWEAPSSLHPPRGAGSVTRGGGAQSQRGTPGAGGAGRARGSSFAKFGNRNVFMKDNSSSSSTDSRSRSSSRSPTRHFRRSDSHSDSDSSYSGNECHPVGRRNPPPKGRGGRGAHMDRGRGRAQRGKRHDLAPTKRSRKKMAALECEDPERELKKQKRAARFQHGHSRRLRLEPLVLQMSNLESSGADPDWQELQIVGTCPDITKHYLRLTCAPDPSTVRPVAVLKKSLCMVKSHWKEKQDYAFACEQMKSIRQDLTVQGIRTEFTVEVYETHARIALEKGDHEEFNQCQTQLKSLYAENLAGNVGEFTAYRILYYIFTKNSGDITTELAYLTRELKADPCVSHALALRAAWALGNYHRFFRLYCHAPCMSGYLVDKFADRERKAALKAMIKTYVALRSAAFCAVALPRPLHILVSLRCLCWSPRPHLPHTPEPPCSPQSQPLSVSAFLPVFRHCSWCHVLLFSARLCADHLGTWFIFPFLGFRRPAGSSLLLFFLTC", "length": 833, "header": "tr|A0A9J7JZP1-1|A0A9J7JZP1_CRIGR Computationally mapped isoform of Leukocyte receptor cluster member 8 homolog isoform X4 OS=Cricetulus griseus OX=10029 GN=LOC100774417 PE=4 SV=1 CANONICAL=A0A9J7JRR8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K182-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K182/entry", "sequence": { "sequence": "MAANVGDQRSADWSSQYGMVAGASRENGMETPMHENPEWEKARQALASISKAGAASSSKASSSGPVASAQYVSQAEATALQQQQQQYYQWYQQYNYAYPYSYYYPMSMYQSYGSPSQYGMASSYGSAAAQQPSAPQHQGTLNQPPVPGMDESMAYQASAQQLPAAQPPQPSNPQHGTHGLSNGPQPGTAPATQHSQAGAPTGQTYGPHSYSEPAKPKKGQQLWTRMKPAPGTGGLKFNIQKRPFAVTNQNFSSNAENQHSSFGSQPSSEKAQNHSGPSGRGNLSGKPDDWPQDMKEYVERCFTACESEEDKDRTEKLLKEVLQARLQDGSAYTIDWSREPLPGLTREPVAESPKKKRWEAPSSLHPPRGAGSVTRGGGAQSQRGTPGAGGAGRARGSSFAKFGNRNVFMKDNSSSSSTDSRSRSSSRSPTRHFRRSDSHSDSDSSYSGNECHPVGRRNPPPKGRGGRGAHMDRGRGRAQRGKRHDLAPTKRSRKKMAALECEDPERELKKQKRAARFQHGHSRRLRLEPLVLQMSNLESSGADPDWQELQIVGTCPDITKHYLRLTCAPDPSTVRPVAVLKKSLCMVKSHWKEKQDYAFACEQMKSIRQDLTVQGIRTEFTVEVYETHARIALEKGDHEEFNQCQTQLKSLYAENLAGNVGEFTAYRILYYIFTKNSGDITTELAYLTRELKADPCVSHALALRAAWALGNYHRFFRLYCHAPCMSGYLVDKFADRERKAALKAMIKTYVALRSAAFCAVALPRPLHILVSLRCLCWSPRPHLPHTPEPPCSPQSQPLSVSAFLPVFRHCSWCHVLLFSARLCADHLGTWFIFPFLGFRRPAGSSLLLFFLTC", "length": 853, "header": "tr|A0A9J7K182-1|A0A9J7K182_CRIGR Computationally mapped isoform of Leukocyte receptor cluster member 8 homolog isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100774417 PE=4 SV=1 CANONICAL=A0A9J7JRR8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A061HVM3", "url": "https://www.uniprot.org/uniprotkb/A0A061HVM3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A061HVM3", "url": "https://www.uniprot.org/uniprotkb/A0A061HVM3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100774417", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774417", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JRR8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRR8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 250, "end_pos": 252, "annotation": "n_glycosylation_sequon" }, { "start_pos": 273, "end_pos": 275, "annotation": "n_glycosylation_sequon" }, { "start_pos": 282, "end_pos": 284, "annotation": "n_glycosylation_sequon" }, { "start_pos": 429, "end_pos": 431, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JRR8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRR8" }, { "id": "PS50250", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50250" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PCI", "eco_id": "ECO_0000259", "start_pos": 654, "end_pos": 766, "start_aa": "Asp", "end_aa": "Tyr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 250, "end_pos": 252 }, { "start_pos": 273, "end_pos": 275 }, { "start_pos": 282, "end_pos": 284 }, { "start_pos": 429, "end_pos": 431 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", 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0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JNM8-1", "uniprot_ac": "A0A9J7JNM8", "uniprot_id": "A0A9J7JNM8_CRIGR", "mass": { "chemical_mass": 51511.0, "monoisotopic_mass": 51511.0 }, "refseq": { "ac": "XP_027268401", "name": "probable UDP-sugar transporter protein SLC35A5 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268401" }, "gene_names": [ { "name": "Slc35a5", "type": "recommended", "evidence": [ { "id": "A0A9J7JNM8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNM8" } ] }, { "name": "Slc35a5", "type": "synonym", "evidence": [ { "id": "XP_027268401", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268401" } ] } ], "protein_names": [ { "name": "Probable UDP-sugar transporter protein SLC35A5 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7JNM8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNM8/entry#names_and_taxonomy" } ] }, { "name": "probable UDP-sugar transporter protein SLC35A5 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027268401", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268401" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027268401", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268401" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JNM8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNM8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Slc35a5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNM8", "locus": {} } ], "crossref": [ { "id": "100765499", "url": "https://www.ncbi.nlm.nih.gov/gene/100765499", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007271", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007271", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037185", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037185", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100765499", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765499", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SCLKWAV", "url": "https://omabrowser.org/oma/group/SCLKWAV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A3L7HQT7", "url": "https://www.orthodb.org/?gene=A0A3L7HQT7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JNM8", "url": "https://www.orthodb.org/?gene=A0A9J7JNM8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10231", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10231", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04142", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04142", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027268401", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268401", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A3L7HQT7", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HQT7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A3L7HQT7-1", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HQT7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FVN4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVN4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FVN4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVN4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JNM8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNM8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JNM8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNM8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRFRSATGLLMKVFFLRQLKNSGMERKCFRRPGVGPSKLYTFILGVVFITLSSSRILLVKYSANEENKYDYLPTTVNVCSELMKLILCVFVSVCVIKKEDHQSRHLRCTSWKEFSSFMKWSIPAFLYFLDNLIVFYVLSYLQPAMAVIFSNFSIITTALLFRIVLRRHLNWIQWASLLILFLSIVALTASTKTSQHNLAGHGFHHDSFFTPSNSCLHFRRECSQRDNCTTREWTFTDVNWNTTARVFSHIRLGLGHMLIIVQCFISSMANIYNEKILKEGPQLTESIFIQNSKLYFFSIVFNGLTLVLQSSNRDQIQNCGFFYGHNTFSLALIFVTAFQGLSVAFILKFLDNMFHVLMAQVTTVIITTVSVLVFDFRPSLEFFLEAPTVFLSIFIYNASKPQNLECAPRQERIRDLSGNLWERSSGDGEELERLTKPKSDDSDDDAF", "length": 447, "header": "tr|A0A9J7JNM8-1|A0A9J7JNM8_CRIGR Isoform 1 of Probable UDP-sugar transporter protein SLC35A5 isoform X2 OS=Cricetulus griseus OX=10029 GN=Slc35a5 PE=3 SV=1 CANONICAL=A0A9J7JNM8-1" }, "isoforms": [ { "isoform_ac": "A0A3L7HQT7-1", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HQT7/entry", "sequence": { "sequence": "MKVFFLRQLKNSGMERKCFRRPGVGPSKLYTFILGVVFITLSSSRILLVKYSANEENKYDYLPTTVNVCSELMKLILCVFVSVCVIKKEDHQSRHLRCTSWKEFSSFMKWSIPAFLYFLDNLIVFYVLSYLQPAMAVIFSNFSIITTALLFRIVLRRHLNWIQWASLLILFLSIVALTASTKTSQHNLAGHGFHHDSFFTPSNSCLHFRRECSQRDNCTTREWTFTDVNWNTTARVFSHIRLGLGHMLIIVQCFISSMANIYNEKILKEGPQLTESIFIQNSKLYFFSIVFNGLTLVLQSSNRDQIQNCGFFYGHNTFSLALIFVTAFQGLSVAFILKFLDNMFHVLMAQVTTVIITTVSVLVFDFRPSLEFFLEAPTVFLSIFIYNASKPQNLECAPRQERIRDLSGNLWERSSGDGEELERLTKPKSDDSDDDAF", "length": 437, "header": "tr|A0A3L7HQT7-1|A0A9J7JNM8_CRIGR Computationally mapped isoform of Probable UDP-sugar transporter protein SLC35A5 isoform X2 OS=Cricetulus griseus OX=10029 GN=Slc35a5 PE=3 SV=1 CANONICAL=A0A9J7JNM8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FVN4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVN4/entry", "sequence": { "sequence": "MAVIFSNFSIITTALLFRIVLRRHLNWIQWASLLILFLSIVALTASTKTSQHNLAGHGFHHDSFFTPSNSCLHFRRECSQRDNCTTREWTFTDVNWNTTARVFSHIRLGLGHMLIIVQCFISSMANIYNEKILKEGPQLTESIFIQNSKLYFFSIVFNGLTLVLQSSNRDQIQNCGFFYGHNTFSLALIFVTAFQGLSVAFILKFLDNMFHVLMAQVTTVIITTVSVLVFDFRPSLEFFLEAPTVFLSIFIYNASKPQNLECAPRQERIRDLSGNLWERSSGDGEELERLTKPKSDDSDDDAF", "length": 303, "header": "tr|A0A9J7FVN4-1|A0A9J7JNM8_CRIGR Computationally mapped isoform of Probable UDP-sugar transporter protein SLC35A5 isoform X2 OS=Cricetulus griseus OX=10029 GN=Slc35a5 PE=3 SV=1 CANONICAL=A0A9J7JNM8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JNM8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNM8/entry", "sequence": { "sequence": "MRFRSATGLLMKVFFLRQLKNSGMERKCFRRPGVGPSKLYTFILGVVFITLSSSRILLVKYSANEENKYDYLPTTVNVCSELMKLILCVFVSVCVIKKEDHQSRHLRCTSWKEFSSFMKWSIPAFLYFLDNLIVFYVLSYLQPAMAVIFSNFSIITTALLFRIVLRRHLNWIQWASLLILFLSIVALTASTKTSQHNLAGHGFHHDSFFTPSNSCLHFRRECSQRDNCTTREWTFTDVNWNTTARVFSHIRLGLGHMLIIVQCFISSMANIYNEKILKEGPQLTESIFIQNSKLYFFSIVFNGLTLVLQSSNRDQIQNCGFFYGHNTFSLALIFVTAFQGLSVAFILKFLDNMFHVLMAQVTTVIITTVSVLVFDFRPSLEFFLEAPTVFLSIFIYNASKPQNLECAPRQERIRDLSGNLWERSSGDGEELERLTKPKSDDSDDDAF", "length": 447, "header": "tr|A0A9J7JNM8-1|A0A9J7JNM8_CRIGR Isoform 1 of Probable UDP-sugar transporter protein SLC35A5 isoform X2 OS=Cricetulus griseus OX=10029 GN=Slc35a5 PE=3 SV=1 CANONICAL=A0A9J7JNM8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A3L7HQT7", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HQT7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A3L7HQT7", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HQT7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100765499", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765499", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6AIR5-1", "protein_name": "Solute carrier family 35, member A5", "gene_name": "Slc35a5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MCPSYLCALGLPKGLLMRVLFLRQFKKSSGMERKCFRRPGLGPPTLYTFLLGVIFITLSSSRILLVKYSANEENKYDYLPTTVNVCSELMKLILCILVSLCIVKKEDHQSKHVRCTSWKEFSGFLKWSIPAFLYFLDNLIVFYVLSYLQPAMAVIFSNFSIITTALLFRIVLKRHLNWIQWASLLILFLSIVALTASTKTSQHDLAGHGFHHDAFFTPSNSCLHFRRDCSLGDNCTSKEWAFSDVQWNSTARVFSHIRLGLGHVLIIVQCFISSMANIYNEKILKEGTQHTESIFIQNSKLYFFGIVFNGLTLVLQSSNRDQIQNCGFFYGHNAFSVVLIFVTAFQGLSVAFILKFLDNMFHVLMAQVTTVIITTVSVLVFDFRPSLDFFLEAPSVLLSIFIYNASKPQHLECAPRQERIRELGGNLWERSSGDGEELERLTKPKSDDSDDDTL", "length": 454 }, "evidence": [ { "id": "A0A9J7JNM8", "url": "https://omabrowser.org/oma/group/A0A9J7JNM8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V0XQ63-1", "protein_name": "Solute carrier family 35 member A5", "gene_name": "SLC35A5", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MESKCCRRSAVCSKTTIYTFLLGGVFITLGSSRILLMKYSANEDNKYDYLPTTVNICSEVVKLFLCVVLALWVKKKEGCLDRPSGCLSWKNFCNSMKWSIPAFLYFLDNLIVFYVLSYLQPAMAVLFSNFVIITTALLFRIVLKRKLSWVQWASLVILFLSIVALTLGTGGRQQSLAVHGFHHSMFFNPSNHCLLSDRPEETCVENGSCGAPRFLPVFQWNVTSTMAGALKPLRLSLGHLLILVQCFISALANIYNEKILKDGDQLAESIFTQNSKLYAFGVLFNGLMLGLQAKDRGQIGNCGFFYGHNIFSVALIFVTAFLGLSVAFILKFRDNMFHVMTAQITTVIITTVSFVIFDFRPSLEFFLEAPVVLLSIFIYNASKPRGLEYAAMRERGKLFKGDTWERSSGDGEEFERLNKPSSDIDTDEDSL", "length": 431 }, "evidence": [ { "id": "A0A9J7JNM8", "url": "https://omabrowser.org/oma/group/A0A9J7JNM8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A6QPI1-1", "protein_name": "UDP-sugar transporter protein SLC35A5", "gene_name": "SLC35A5", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MESNCGHPMLSVSSAMYTFLLGAIFITLSSSRILLVKYSANEENKYDYLPTTVNVCSELVKLVFCALVSFWVLKKEDHQNRKLRCGSWKEFFNFMKWSIPAFLYFLDNLIVFYVLSYLQPAMAVIFSNFSIITTALLFRIVLKRHLNGIQWASLLILFLSIVALTSGTETSQHSLAGHGFHHDALFSPSNSCLLFRSECPRKDNCTAKEWTFSEAQWNTTARVFSHIRLGLGHVLIIVQCFISSMANIYNEKILKEGNQLTESIFVQNSKLYFFGVLFNGLTLGLQSGNRDQIKNCGIFYGHNAFSVALIFVTAFQGLSVAFILKFLDNMFHVLMAQVTTVVITTVSVLVFDFRPSLEFFLEAPSVLLSILIYNASNPQGVENVPRKERIRDLSGTLWERSSGDGEELERLTKPKSDIESDEDTF", "length": 425 }, "evidence": [ { "id": "A0A9J7JNM8", "url": "https://omabrowser.org/oma/group/A0A9J7JNM8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q90X48-1", "protein_name": "UDP-sugar transporter protein SLC35A5", "gene_name": "slc35a5", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSFTMARYSSSSSSASSSSCGCCRPCSRICSRSSAYTLALGLGFVTLGTSRILLLKFSGNEENKYDYLPASVNLMAEAIKLVFCLVMSVRVIIREGRSFKDLGCSSGASFLSYLKWSVPAFLYFLDNLIIFYVIAYLQPAMAVLFSNIVIFTTAFLFRVVLKRRLSWVQWASLIILFLSIVSLTTGNGDQHAMAVHGLHPAHISTPSNSCLKYTHLHQVHQSHNESYWSRELWDSQLIHKLNSFGLGYVLLLLQCFISALANIYNEKILKEGEQLVESIFIQNSKLYLFGLVFNSLTLLLHADYRNLTLHCGILYGHNVFSVALGFVTAALGLSVAFILKFRDNMFHVLTGQITTVVVTALSFFLFDFQPSMDFFMQAPVVLLSIFIYHSSKMKDPEYALQQERLRVINGEVFERSRGDGEELERLTKANTESESEEESF", "length": 440 }, "evidence": [ { "id": "A0A9J7JNM8", "url": "https://omabrowser.org/oma/group/A0A9J7JNM8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q921R7-1", "protein_name": "UDP-sugar transporter protein SLC35A5", "gene_name": "Slc35a5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKVIFLRQLKTRGMERKCSRRPGLGPPTLYTFLLGIIFITLSSSRILLVKYSANEENKYDYLPTTVNVCSELMKLILCILVSLCVIKKEDHQSRHLRCTSWKEFSSFMKWSIPAFLYFLDNLIVFYVLSYLQPAMAVIFSNFSIITTALLFRIVLKRHLNWIQWASLLILFLSIVALTASTKTSQHELAGHGFHHDAFFTPSNSCLHFRRDCSLRDNCTSKEWTFSEVQWNTTARVFSHIRLGLGHVLIIVQCFISSMANIYNEKILKEGTQLTESIFIQNSKLYFFGIVFNGLTLVLQSSNRDQIQNCGFFYGHNAFSVVLIFVTAFQGLSVAFILKFLDNMFHVLMAQVTTVIITTVSVLVFDFRPSLDFFLEAPSVLLSIFIYNASKPQNLECAPKQERIRHLSGSLWERSSGDGEELERLTKLKSDDSDDDTL", "length": 437 }, "evidence": [ { "id": "A0A9J7JNM8", "url": "https://omabrowser.org/oma/group/A0A9J7JNM8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BS91-1", "protein_name": "UDP-sugar transporter protein SLC35A5", "gene_name": "SLC35A5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEKQCCSHPVICSLSTMYTFLLGAIFIALSSSRILLVKYSANEENKYDYLPTTVNVCSELVKLVFCVLVSFCVIKKDHQSRNLKYASWKEFSDFMKWSIPAFLYFLDNLIVFYVLSYLQPAMAVIFSNFSIITTALLFRIVLKRRLNWIQWASLLTLFLSIVALTAGTKTLQHNLAGRGFHHDAFFSPSNSCLLFRSECPRKDNCTAKEWTFPEAKWNTTARVFSHIRLGMGHVLIIVQCFISSMANIYNEKILKEGNQLTESIFIQNSKLYFFGILFNGLTLGLQRSNRDQIKNCGFFYGHSAFSVALIFVTAFQGLSVAFILKFLDNMFHVLMAQVTTVIITTVSVLVFDFRPSLEFFLEAPSVLLSIFIYNASKPQVPEYAPRQERIRDLSGNLWERSSGDGEELERLTKPKSDESDEDTF", "length": 424 }, "evidence": [ { "id": "A0A9J7JNM8", "url": "https://omabrowser.org/oma/group/A0A9J7JNM8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9C5H6-1", "protein_name": "CMP-sialic acid transporter 3", "gene_name": "UTR6", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MKNGIAECPACHSKLVSPGSKTISRAYDDHKIRVSSKQRVLNVLLVVGDCMLVGLQPVLVYMSKVDGKFNFSPISVNFLTEIAKVIFAIVMLLIQARHQKVGEKPLLSVSTFVQAARNNVLLAVPALLYAINNYLKFTMQLYFNPATVKMLSNLKVLVIAVLLKMVMKRRFSIIQWEALALLLIGISVNQLRSLPEGATAIGIPLATGAYVCTVIFVTVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILGTVIYKGPGSFDILQGHSRATMFLILNNAAQGILSSFFFKYADTILKKYSSTVATIFTGIASAALFGHVITMNFLLGISIVFISMHQFFSPLAKARDEQQQNGNLELGNTKDTHRANESFINMAAGANEEASHRGESDDRTPLLPR", "length": 405 }, "evidence": [ { "id": "A0A9J7JNM8", "url": "https://omabrowser.org/oma/group/A0A9J7JNM8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JNM8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNM8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "pyrimidine nucleotide-sugar transmembrane transporter activity", "id": "GO:0015165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015165", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JNM8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNM8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 151, "end_pos": 153, "annotation": "n_glycosylation_sequon" }, { "start_pos": 227, "end_pos": 229, "annotation": "n_glycosylation_sequon" }, { "start_pos": 241, "end_pos": 243, "annotation": "n_glycosylation_sequon" }, { "start_pos": 397, "end_pos": 399, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 151, "end_pos": 153 }, { "start_pos": 227, "end_pos": 229 }, { "start_pos": 241, "end_pos": 243 }, { "start_pos": 397, "end_pos": 399 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JM63-1", "uniprot_ac": "A0A9J7JM63", "uniprot_id": "A0A9J7JM63_CRIGR", "mass": { "chemical_mass": 30797.0, "monoisotopic_mass": 30797.0 }, "refseq": { "ac": "XP_027267480", "name": "retinitis pigmentosa 9 protein isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267480" }, "gene_names": [ { "name": "Rp9", "type": "recommended", "evidence": [ { "id": "A0A9J7JM63", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JM63" } ] }, { "name": "Rp9", "type": "synonym", "evidence": [ { "id": "XP_027267480", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267480" } ] } ], "protein_names": [ { "name": "Retinitis pigmentosa 9 protein isoform X3", "type": "synonym", "evidence": [ { "id": "A0A9J7JM63", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JM63/entry#names_and_taxonomy" } ] }, { "name": "retinitis pigmentosa 9 protein isoform X3", "type": "synonym", "evidence": [ { "id": "XP_027267480", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267480" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027267480.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027267480", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267480" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JM63", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JM63" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Rp9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JM63", "locus": {} } ], "crossref": [ { "id": "A0A9J7JM63", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JM63", "database": "AlphaFoldDB", "categories": [] }, { "id": "100768648", "url": "https://www.ncbi.nlm.nih.gov/gene/100768648", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR034585", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034585", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR060663", "url": "https://www.ebi.ac.uk/interpro/entry/IPR060663", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR060664", "url": "https://www.ebi.ac.uk/interpro/entry/IPR060664", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768648", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768648", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JM63", "url": "https://www.orthodb.org/?gene=A0A9J7JM63", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7K7Z5", "url": "https://www.orthodb.org/?gene=A0A9J7K7Z5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR35252", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35252", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35252:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35252:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF28352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF28369", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28369", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027267480", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267480", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A3L7HRR6", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HRR6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A3L7HRR6-1", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HRR6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GZF9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZF9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GZF9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZF9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JM63", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JM63", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JM63-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JM63-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K7Z5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7Z5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K7Z5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7Z5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSGAGSRRPREPAEQELQRRREQKRRRHDAQQLQQLKHLESLTAICGFTECFLHHHGNQHSMVDDQETDFTARECFLFTCLMKIAFCVSFSSYEKPPPGFIKEDETKPEDCIPDVPGNEHAREFLAHAPTKGLWMPLGREVKVMQCWRCKRYGHRTGDKECPFFIKGNQKLEQFRVAHEDPMYDIIRENKRHEKDVRIQQLKQLLEDSTSDEDESSSSSSGKEKRKKKKKKEKHKKKKKEKKKRKKRKHKASKSSESSDSE", "length": 262, "header": "tr|A0A9J7JM63-1|A0A9J7JM63_CRIGR Isoform 1 of Retinitis pigmentosa 9 protein isoform X3 OS=Cricetulus griseus OX=10029 GN=Rp9 PE=4 SV=1 CANONICAL=A0A9J7JM63-1" }, "isoforms": [ { "isoform_ac": "A0A3L7HRR6-1", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HRR6/entry", "sequence": { "sequence": "MSSGAGSRRPREPAEQELQRRREQKRRRHDAQQLQQLKHLESFYEKPPPGFIKEDETKPEDCIPDVPGNEHAREFLAHAPTKGLWMPLGREVKVMQCWRCKRYGHRTGDKECPFFIKGNQKLEQFRVAHEDPMYDIIRENKRHEKDVRIQQLKQLLEDSTSDEDESSSSSSGKEKRKKKKKKEKHKKKKKEKKKRKKRKHKASKSSESSDSE", "length": 212, "header": "tr|A0A3L7HRR6-1|A0A9J7JM63_CRIGR Computationally mapped isoform of Retinitis pigmentosa 9 protein isoform X3 OS=Cricetulus griseus OX=10029 GN=Rp9 PE=4 SV=1 CANONICAL=A0A9J7JM63-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GZF9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZF9/entry", "sequence": { "sequence": "MSSGAGSRRPREPAEQELQRRREQKRRRHDAQQLQQLKHLESLTAICGFTECFLHHHGNQHSMVDDQETDFTARECFLFTCLMKIAFCVSFSSYEKPPPGFIKEDETKPEDCIPDVPGNEHAREFLAHAPTKGLWMPLGREVKVMQCMTVPFPHWMECDSTGFRDWLVLRTEIKEMKESEGTVAGAHQVPGVLARSLDKFYQTKT", "length": 205, "header": "tr|A0A9J7GZF9-1|A0A9J7GZF9_CRIGR Computationally mapped isoform of Retinitis pigmentosa 9 protein isoform X5 OS=Cricetulus griseus OX=10029 GN=Rp9 PE=4 SV=1 CANONICAL=A0A9J7JM63-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JM63-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JM63/entry", "sequence": { "sequence": "MSSGAGSRRPREPAEQELQRRREQKRRRHDAQQLQQLKHLESLTAICGFTECFLHHHGNQHSMVDDQETDFTARECFLFTCLMKIAFCVSFSSYEKPPPGFIKEDETKPEDCIPDVPGNEHAREFLAHAPTKGLWMPLGREVKVMQCWRCKRYGHRTGDKECPFFIKGNQKLEQFRVAHEDPMYDIIRENKRHEKDVRIQQLKQLLEDSTSDEDESSSSSSGKEKRKKKKKKEKHKKKKKEKKKRKKRKHKASKSSESSDSE", "length": 262, "header": "tr|A0A9J7JM63-1|A0A9J7JM63_CRIGR Isoform 1 of Retinitis pigmentosa 9 protein isoform X3 OS=Cricetulus griseus OX=10029 GN=Rp9 PE=4 SV=1 CANONICAL=A0A9J7JM63-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K7Z5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7Z5/entry", "sequence": { "sequence": "MAISTAWLMTKKLILQPENYEKPPPGFIKEDETKPEDCIPDVPGNEHAREFLAHAPTKGLWMPLGREVKVMQCWRCKRYGHRTGDKECPFFIKGNQKLEQFRVAHEDPMYDIIRENKRHEKDVRIQQLKQLLEDSTSDEDESSSSSSGKEKRKKKKKKEKHKKKKKEKKKRKKRKHKASKSSESSDSE", "length": 188, "header": "tr|A0A9J7K7Z5-1|A0A9J7K7Z5_CRIGR Computationally mapped isoform of Retinitis pigmentosa 9 protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Rp9 PE=4 SV=1 CANONICAL=A0A9J7JM63-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A3L7HRR6", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HRR6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A3L7HRR6", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HRR6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100768648", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768648", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "signal recognition particle receptor complex", "id": "GO:0005785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005785", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JM63", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JM63" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JM63", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JM63" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JM63", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JM63" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "cognition", "id": "GO:0050890", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050890", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JM63", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JM63" } ], "pmid": "" }, { "name": "RNA splicing", "id": "GO:0008380", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008380", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JM63", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JM63" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JM63", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JM63" }, { "id": "PF28369", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28369" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Retinitis pigmentosa 9 protein C-terminal", "eco_id": "ECO_0000259", "start_pos": 169, "end_pos": 232, "start_aa": "Asn", "end_aa": "Lys", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7JM63", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JM63" }, { "id": "PF28352", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28352" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Retinitis pigmentosa 9 protein N-terminal", "eco_id": "ECO_0000259", "start_pos": 19, "end_pos": 42, "start_aa": "Gln", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JK63-1", "uniprot_ac": "A0A9J7JK63", "uniprot_id": "A0A9J7JK63_CRIGR", "mass": { "chemical_mass": 47493.0, "monoisotopic_mass": 47493.0 }, "refseq": { "ac": "XP_003506357", "name": "spermatogenesis associated 6-like protein isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003506357" }, "gene_names": [ { "name": "Spata6l", "type": "recommended", "evidence": [ { "id": "A0A9J7JK63", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK63" } ] }, { "name": "Spata6l", "type": "synonym", "evidence": [ { "id": "XP_003506357", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003506357" } ] } ], "protein_names": [ { "name": "Spermatogenesis associated 6-like protein isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7JK63", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK63/entry#names_and_taxonomy" } ] }, { "name": "spermatogenesis associated 6-like protein isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003506357", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003506357" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614228.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Apr 30, 2014 this sequence version replaced XP_003506357.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003506357", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003506357" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JK63", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK63" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Spata6l", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK63", "locus": {} } ], "crossref": [ { "id": "100761183", "url": "https://www.ncbi.nlm.nih.gov/gene/100761183", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR032732", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032732", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042769", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042769", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100761183", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761183", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ADFHWET", "url": "https://omabrowser.org/oma/group/ADFHWET/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2LJ79", "url": "https://www.orthodb.org/?gene=A0A8C2LJ79", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FLH4", "url": "https://www.orthodb.org/?gene=A0A9J7FLH4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FQ44", "url": "https://www.orthodb.org/?gene=A0A9J7FQ44", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JGM5", "url": "https://www.orthodb.org/?gene=A0A9J7JGM5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JJ52", "url": "https://www.orthodb.org/?gene=A0A9J7JJ52", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JK63", "url": "https://www.orthodb.org/?gene=A0A9J7JK63", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16435", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16435", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16435:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16435:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14909", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14909", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003506357", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003506357", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LJ79", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LJ79", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LJ79-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LJ79-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FKZ6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKZ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FKZ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKZ6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FLH4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLH4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FLH4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLH4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQ44", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ44", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQ44-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ44-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JCM0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCM0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JCM0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCM0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JGM5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGM5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JGM5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGM5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JJ52", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJ52", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JJ52-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJ52-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JK63", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK63", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JK63-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK63-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K4Y9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4Y9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K4Y9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4Y9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPLEVVVELHIRAISCPGVFLPDKESVYLGVYLLNQYLETDCFRSMFPIEIQQSMRFEKKFENAIDPGAVAEILESFLTRFELIQLVSPVWEELAYYEENTRNFLFPEPKLTSLHLGLDREVLMKTAIGFPGIAPKLEFSTRTAIRECMCPLSNRFFEDNCKSQRLLFKSQRAPTNYRKMKPKEKSPDRLPKGNSSRVPTPSSPRRLLPHQPTPVNFGKSFGLPGERKPPFVVRHVDSENPFGESNLDHLLQKSRRKSKFFDFDIPVRRASSLESLATNIKVTREPDERILLRNQPPSPLDSRMSEKPIPSHQGDADFHLETPFSNTPRHSRSPSPLDKPPLQERSEASTHPLAWFQPHSQSTWEKIHESVCSLLTSHRAHPKEDFIPETNYICSRPSCPMKTFPQHGQRYF", "length": 412, "header": "tr|A0A9J7JK63-1|A0A9J7JK63_CRIGR Isoform 1 of Spermatogenesis associated 6-like protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Spata6l PE=3 SV=1 CANONICAL=A0A9J7JK63-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LJ79-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LJ79/entry", "sequence": { "sequence": "MPLEVVVELHIRAISCPGVFLPDKESVYLGVYLLNQYLETDCFRSMFPIEIQQSMRFEKKFENAIDPGAVAEILESFLTRFELIQLVSPVWEELAYYEENTRNFLFPEPKLTSLHLGLDREVLMKTAIGFPGIAPKLEFSTRTAIRECMCPLSNRFFEDNCKSQRLLFKSQRAPTNYRKMKPKEKSPDRLPKGNSSRVPTPSSPRRLLPHQPTPVNFGKSFGLPGERKPPFVVRHVDSENPFGESNLDHLLQKSRRKSKFFDFDIPVRRASSLESLATNIKVTREPDERILLRNQPPSPLDSRMSEKPIPSHQGDADFHLETPFSNTPRHSRSPSPLDKPPLQERFQPHSQSTWEKIHESVCSLLTSHRAHPKEDFIPETNYICSRPSCPMKTFPQHGQRYF", "length": 402, "header": "tr|A0A8C2LJ79-1|A0A9J7JK63_CRIGR Computationally mapped isoform of Spermatogenesis associated 6-like protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Spata6l PE=3 SV=1 CANONICAL=A0A9J7JK63-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FKZ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKZ6/entry", "sequence": { "sequence": "MPLEVVVELHIRAKFENAIDPGAVAEILESFLTRFELIQLVSPVWEELAYYEENTRNFLFPEPKLTSLHLGLDREVLMKTAIGFPGIAPKLEFSTRTAIRECMCPLSNRFFEDNCKSQRLLFKSQRAPTNYRKMKPKEKSPDRLPKGNSSRVPTPSSPRRLLPHQPTPVNFGKSFGLPGERKPPFVVRHVDSENPFGESNLDHLLQKSRRKSKFFDFDIPVRRASSLESLATNIKVTREPDERILLRNQPPSPLDSRMSEKPIPSHQGDADFHLETPFSNTPRHSRSPSPLDKPPLQERSEASTHPLAWFQPHSQSTWEKIHESVCSLLTSHRAHPKEDFIPETNYICSRPSCPMKTFPQHGQRYF", "length": 366, "header": "tr|A0A9J7FKZ6-1|A0A9J7JK63_CRIGR Computationally mapped isoform of Spermatogenesis associated 6-like protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Spata6l PE=3 SV=1 CANONICAL=A0A9J7JK63-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FLH4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLH4/entry", "sequence": { "sequence": "MPLEVVVELHIRAISCPGVFLPDKESVYLGVYLLNQYLETDCFRSMFPIEIQQSMRFEKKFENAIDPGAVAEILESFLTRFELIQLVSPVWEELAYYEENTRNFLFPEPKLTSLHLGLDREVLMKTAIGFPEDNCKSQRLLFKSQRAPTNYRKMKPKEKSPDRLPKGNSSRVPTPSSPRRLLPHQPTPVNFGKSFGLPGERKPPFVVRHVDSENPFGESNLDHLLQKSRRKSKFFDFDIPVRRASSLESLATNIKVTREPDERILLRNQPPSPLDSRMSEKPIPSHQGDADFHLETPFSNTPRHSRSPSPLDKPPLQERSEASTHPLAWFQPHSQSTWEKIHESVCSLLTSHRAHPKEDFIPETNYICSRPSCPMKTFPQHGQRYF", "length": 386, "header": "tr|A0A9J7FLH4-1|A0A9J7JK63_CRIGR Computationally mapped isoform of Spermatogenesis associated 6-like protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Spata6l PE=3 SV=1 CANONICAL=A0A9J7JK63-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FQ44-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ44/entry", "sequence": { "sequence": "MPLEVVVELHIRAISCPGVFLPDKESVYLGVYLLNQYLETDCFRSMFPIEIQQSMRFEKKFENAIDPGAVAEILESFLTRFELIQLVSPVWEELAYYEENTRNFLFPEPKLTSLHLGLDREVLMKTAIGFPGIAPKLEFSTRTAIRECMCPLSNRFFEDNCKSQRLLFKSQRAPTNYRKMKPKEKSPDRLPKGNSSRVPTPSSPRRLLPHQPTPVNFGKSFGLPGERKPPFVVRHVDSENPFGESNLDHLLQKSRRKSKFFDFDIPVRRASSLESLATNIKVTREPDERILLRNQPPSPLDSRMSEKPIPSHQGDADFHLETPFSNTPRHSRSPSPLDKPPLQERSEASTHPLAWKILSLRQIISVQDQAAQ", "length": 372, "header": "tr|A0A9J7FQ44-1|A0A9J7JK63_CRIGR Computationally mapped isoform of Spermatogenesis associated 6-like protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Spata6l PE=3 SV=1 CANONICAL=A0A9J7JK63-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JCM0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCM0/entry", "sequence": { "sequence": "MPLEVVVELHIRAISCPGVFLPDKESVYLGVYLLNQYLETDCFRSMFPIEIQQSMRFEKKFENAIDPGAVAEILESFLTRFELIQLVSPVWEELAYYEENTRNFLFPEPKLTSLHLGLDREVLMKTAIGFPGIAPKLEFSTRTAIRECMCPLSNRFFEDNCKSQRLLFKSQRAPTNYRKMKPKEKSPDRLPKGNSSRVPTPSSPRRLLPHQPTPVNFGKSFGLPGERKPPFVVRHVDSENPFGESNLDHLLQKSRRKSKFFDFDIPVRRASSLESLATNIKVTREPDERILLRNQPPSPLDSRMSEKPIPSHQGDADFHLETPFSNTPRHSRSPSPLDKPPLQERKILSLRQIISVQDQAAQ", "length": 362, "header": "tr|A0A9J7JCM0-1|A0A9J7JCM0_CRIGR Computationally mapped isoform of Spermatogenesis associated 6-like protein isoform X7 OS=Cricetulus griseus OX=10029 GN=Spata6l PE=3 SV=1 CANONICAL=A0A9J7JK63-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JGM5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGM5/entry", "sequence": { "sequence": "MFPIEIQQSMRFEKKFENAIDPGAVAEILESFLTRFELIQLVSPVWEELAYYEENTRNFLFPEPKLTSLHLGLDREVLMKTAIGFPGIAPKLEFSTRTAIRECMCPLSNRFFEDNCKSQRLLFKSQRAPTNYRKMKPKEKSPDRLPKGNSSRVPTPSSPRRLLPHQPTPVNFGKSFGLPGERKPPFVVRHVDSENPFGESNLDHLLQKSRRKSKFFDFDIPVRRASSLESLATNIKVTREPDERILLRNQPPSPLDSRMSEKPIPSHQGDADFHLETPFSNTPRHSRSPSPLDKPPLQERSEASTHPLAWFQPHSQSTWEKIHESVCSLLTSHRAHPKEDFIPETNYICSRPSCPMKTFPQHGQRYF", "length": 367, "header": "tr|A0A9J7JGM5-1|A0A9J7JGM5_CRIGR Computationally mapped isoform of Spermatogenesis associated 6-like protein isoform X5 OS=Cricetulus griseus OX=10029 GN=Spata6l PE=3 SV=1 CANONICAL=A0A9J7JK63-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JJ52-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJ52/entry", "sequence": { "sequence": "MPLEVVVELHIRAISCPGVFLPDKESVYLGVYLLNQYLETDCFRSMFPIEIQQSMRFEKKFENAIDPGAVAEILESFLTRFELIQLVSPVWEELAYYEENTRNFLFPEPKLTSLHLGLDREVLMKTAIGFPGIAPKLEFSTRTAIRECMCPLSNRFFEDNCKSQRLLFKSQRAPTNYRKMKPKEKSPDRLPKGNSSRVPTPSSPRRLLPHQPTPVNFGKSFGLPGERKPPFVVRHVDSENPFGESNLDHLLQKSRRKSKFFDFDIPVRRASSLESLATNIKVTREPDERILLRNQPPSPLDSRMSEKPIPSHQGDADFHLETPFSNTPRHSRSPSPLDKPPLQERSEASTHPLAWEHS", "length": 358, "header": "tr|A0A9J7JJ52-1|A0A9J7JK63_CRIGR Computationally mapped isoform of Spermatogenesis associated 6-like protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Spata6l PE=3 SV=1 CANONICAL=A0A9J7JK63-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JK63-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK63/entry", "sequence": { "sequence": "MPLEVVVELHIRAISCPGVFLPDKESVYLGVYLLNQYLETDCFRSMFPIEIQQSMRFEKKFENAIDPGAVAEILESFLTRFELIQLVSPVWEELAYYEENTRNFLFPEPKLTSLHLGLDREVLMKTAIGFPGIAPKLEFSTRTAIRECMCPLSNRFFEDNCKSQRLLFKSQRAPTNYRKMKPKEKSPDRLPKGNSSRVPTPSSPRRLLPHQPTPVNFGKSFGLPGERKPPFVVRHVDSENPFGESNLDHLLQKSRRKSKFFDFDIPVRRASSLESLATNIKVTREPDERILLRNQPPSPLDSRMSEKPIPSHQGDADFHLETPFSNTPRHSRSPSPLDKPPLQERSEASTHPLAWFQPHSQSTWEKIHESVCSLLTSHRAHPKEDFIPETNYICSRPSCPMKTFPQHGQRYF", "length": 412, "header": "tr|A0A9J7JK63-1|A0A9J7JK63_CRIGR Isoform 1 of Spermatogenesis associated 6-like protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Spata6l PE=3 SV=1 CANONICAL=A0A9J7JK63-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K4Y9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4Y9/entry", "sequence": { "sequence": "MPLEVVVELHIRAISCPGVFLPDKESVYLGVYLLNQYLETDCFRSMFPIEIQQSMRFEKKFENAIDPGAVAEILESFLTRFELIQLVSPVWEELAYYEENTRNFLFPEPKLTSLHLGLDREVLMKTAIGFPGIAPKLEFSTRTAIRECMCPLSNRFFEDNCKSQRLLFKSQRAPTNYRKMKPKEKSPDRLPKGNSSRVPTPSSPRRLLPHQPTPVNFGKSFGLPGERKPPFVVRHVDSENPFGESNLDHLLQKSRRKSKFFDFDIPVRRASSLESLATNIKVTREPDERILLRNQPPSPLDSRMSEKPIPSHQGDADFHLETPFSNTPRHSRSPSPLDKPPLQERSEASTHPLAWRLKLRR", "length": 361, "header": "tr|A0A9J7K4Y9-1|A0A9J7K4Y9_CRIGR Computationally mapped isoform of Spermatogenesis associated 6-like protein isoform X9 OS=Cricetulus griseus OX=10029 GN=Spata6l PE=3 SV=1 CANONICAL=A0A9J7JK63-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 200, "start_aa": "Thr", "end_pos": 200, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr200", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LJ79", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LJ79" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LJ79", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LJ79" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100761183", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761183", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "B2RV46-1", "protein_name": "Spermatogenesis associated 6-like protein", "gene_name": "Spata6l", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRFVKVFEEAIDPGAVAELLESFLTRFELVQLVSPAWEELAYYEKNTRDFLFPEPRLASSHLGMQREVLMKTAIWFPGIAPKIEFSTRTAILECVFPCKNRFICEERCRLERSVSKSHGQRVQATNRKKKPKEKDSDQLPKGTQSRLPSPQRLHLHRPTQRNHGKSFKFPGERKPPFVVRHVDSGNPFGENNLEHCSKKSRRKPKLINFDLSKKRASSLDSLEANIKVIREPDERIVLKSQPPPPVDSSESRKPSLSHQGDASLHTETSVTTSQLSRPPSPLNQPLLQERFQPFSQSTWQKIPEGVRSLLTSHRAHPKDSFISETNSIHERPSYPLKKHLLRAQRYF", "length": 347 }, "evidence": [ { "id": "A0A9J7JK63", "url": "https://omabrowser.org/oma/group/A0A9J7JK63/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F1N2M9-1", "protein_name": "Spermatosis associated 6 like", "gene_name": "SPATA6L", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPLEVVVELQIRAISCPGVFLPDKHDVFLGVYLLNQYLETDCFPSMFPIMVQRSMRFEKVFENAIDPGAVADILESFLTRFELIQLVSPVWQELAYYEENTRDFLFPEPRLTPSHPGMCREVLMKTVEGFPGIAPKIEFSTRTAIRERVFLHRNRFFEERRKSQRPLSTPNGPKFPLSCVKMKPRESNLDRVPPGMQSRPLSPYCTRRFFQDQPAQLNLGYTFKIPGESKPPFVVRHVDSAKPFGENSSQHHSQKSRRKPNFSNFPFPVRRVSSLDSLGANVKVIKEPDERIVLRNESPSSLDSSKFGKPSPSYSNQGDADFHQETSFDTSQNSRSPSPLLDQPLLRERPHPGFQSTWKKIHERVCSLLTSHRAQQHLNKEESISEIKNILNRPGYPLKKYRAHEQKYF", "length": 409 }, "evidence": [ { "id": "A0A9J7JK63", "url": "https://omabrowser.org/oma/group/A0A9J7JK63/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6AYJ3-1", "protein_name": "Spermatogenesis associated 6-like protein", "gene_name": "Spata6l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPLEVVVELQIRAISCPGVFLPDKEVVYLGVYLLNQYLETDCFPSVFPIVIQQSMRFEKVFEEAMDPGAVAELLESFLTRFELVQLVSPAWEELAYYEKNTRDFLFPEPKLTSSHLGMQREVLMKTAIWFPGIAPKLEFSTRTAILECVFPCKNRFLWEERCKLQQSFSKLNGPANNRKKKPKEKNSDQLSKGTPFWGPSPQRLHLHRPTQRNPGKSFRFLGERKPPFVVRHVDSGNPFGENNLEHHSQKSRRKPKFINFDLAKKRAFSLDSLEANIKVVREPDERIVLRSQSPPPLNSGHFRKPLLNHQGDVDFHPETTVTTSQLSSPPSPLDHSLLQERFQPCSASMWQKIQERACSLLTPNRAHPKEDSISETNSIHERPSYLLRKHLLREHRYF", "length": 398 }, "evidence": [ { "id": "A0A9J7JK63", "url": "https://omabrowser.org/oma/group/A0A9J7JK63/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8N4H0-1", "protein_name": "Spermatogenesis associated 6-like protein", "gene_name": "SPATA6L", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPLEVVVELQIRAISCPGVFLPGKQDVYLGVYLMNQYLETNSFPSAFPIMIQESMRFEKVFESAVDPGAVVDLLEMWDELAYYEENTRDFLFPEPKLTPSHPRRCREVLMKTALGFPGIAPKIEFSTRTAIRECVFLHRNRFLEERHESRRPLSTSHEPIFPLNTIKMKLKENNLNRLPKGMQARAPSQYSTRHFFQDQPAQLNLGNNFKISGGSKPPFVVRHVDSAKPFGENISEHHLRRSRRKSKFSDFPFPTRRASSLDSLAANVKVIKEPDERIVLRSDSSSCLDSSQFGKSSSSKQGDADFHGKASFATYQHSTSPGPLDQPLLRERFHPGSQSTWKNIHERVCSLLTSHRAQLHQNKEDSTSEVNYIIERPSYPLKKYSLHEQRYF", "length": 392 }, "evidence": [ { "id": "A0A9J7JK63", "url": "https://omabrowser.org/oma/group/A0A9J7JK63/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "spermatogenesis", "id": "GO:0007283", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007283", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JK63", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK63" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "myosin light chain binding", "id": "GO:0032027", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032027", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JK63", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK63" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "sperm head-tail coupling apparatus", "id": "GO:0120212", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120212", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JK63", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK63" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 194, "end_pos": 196, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JK63", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK63" }, { "id": "PF14909", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14909" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Spermatogenesis-associated protein 6 N-terminal", "eco_id": "ECO_0000259", "start_pos": 7, "end_pos": 145, "start_aa": "Val", "end_aa": "Ile", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 200 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 194, "end_pos": 196 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JPG0-1", "uniprot_ac": "A0A9J7JPG0", "uniprot_id": "A0A9J7JPG0_CRIGR", "mass": { "chemical_mass": 33357.0, "monoisotopic_mass": 33357.0 }, "refseq": { "ac": "XP_007650095", "name": "phosphatidylinositol-glycan biosynthesis class F protein isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007650095" }, "gene_names": [ { "name": "Pigf", "type": "recommended", "evidence": [ { "id": "A0A9J7JPG0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPG0" } ] }, { "name": "Pigf", "type": "synonym", "evidence": [ { "id": "XP_007650095", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007650095" } ] } ], "protein_names": [ { "name": "Phosphatidylinositol-glycan biosynthesis class F protein isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7JPG0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPG0/entry#names_and_taxonomy" } ] }, { "name": "phosphatidylinositol-glycan biosynthesis class F protein isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007650095", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007650095" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003615099.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007650095", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007650095" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JPG0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPG0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Pigf", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPG0", "locus": {} } ], "crossref": [ { "id": "100764893", "url": "https://www.ncbi.nlm.nih.gov/gene/100764893", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR009580", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009580", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100764893", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764893", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DHEIKAM", "url": "https://omabrowser.org/oma/group/DHEIKAM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2LNK5", "url": "https://www.orthodb.org/?gene=A0A8C2LNK5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JPG0", "url": "https://www.orthodb.org/?gene=A0A9J7JPG0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PF06699", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06699", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007650095", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007650095", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LNK5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LNK5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LNK5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LNK5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GXD9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GXD9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GXD9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GXD9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JPG0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPG0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JPG0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPG0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKDTDIKRLLYSNLLCIFSVFLSIFIPSLFLDNFSILETHLTWLCTCSASVTGVNLLLHLVVKPNVSSRRSSLSHKVTRVLKCCIYFLLSCFFLHIIFVLYGAPLIELVLETFLFAVILSTFTTIPCLCLLGPNLKAWLRVFSRNGVTSIWENSLQITTISSFIGAWLGAFPIPLDWERPWQFLWCHCYSPINQILQIKTSLWLIMLIESARKADKGMMGLAKCGDFARANFEKILLYKLCSLKYSTLLKDFSSPFLATHYTLDMFTLCSKQASLGYVLFIFWRNGSVWFL", "length": 291, "header": "tr|A0A9J7JPG0-1|A0A9J7JPG0_CRIGR Isoform 1 of Phosphatidylinositol-glycan biosynthesis class F protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Pigf PE=4 SV=1 CANONICAL=A0A9J7JPG0-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LNK5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LNK5/entry", "sequence": { "sequence": "MKDTDIKRLLYSNLLCIFSVFLSIFIPSLFLDNFSILETHLTWLCTCSASVTGVNLLLHLVVKPNVSSRRSSLSHKVTRVLKCCIYFLLSCFFLHIIFVLYGAPLIELVLETFLFAVILSTFTTIPCLCLLGPNLKAWLRVFSRNGVTSIWENSLQITTISSFIGAWLGAFPIPLDWERPWQVWPISCTLGATFGYVAGLVSSPLWIYWNRKQLTYKSN", "length": 219, "header": "tr|A0A8C2LNK5-1|A0A9J7JPG0_CRIGR Computationally mapped isoform of Phosphatidylinositol-glycan biosynthesis class F protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Pigf PE=4 SV=1 CANONICAL=A0A9J7JPG0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GXD9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GXD9/entry", "sequence": { "sequence": "MKDTDIKRLLYSNLLCIFSVFLSIFIPSLFLDNFSILETHLTWLCTCSASVTGVNLLLHLVVKPNVSSRRSSLSHKVTRVLKCCIYFLLSCFFLHIIFVLYGAPLIELVLETFLFAVILSTFTTIPCLCLLGPNLKAWLRVFSRNGVTSIWENSLQITTISSFIGAWLGAFPIPLDWERPWQWQRRFCKKKY", "length": 192, "header": "tr|A0A9J7GXD9-1|A0A9J7GXD9_CRIGR Computationally mapped isoform of Phosphatidylinositol-glycan biosynthesis class F protein isoform X3 OS=Cricetulus griseus OX=10029 GN=Pigf PE=4 SV=1 CANONICAL=A0A9J7JPG0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JPG0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPG0/entry", "sequence": { "sequence": "MKDTDIKRLLYSNLLCIFSVFLSIFIPSLFLDNFSILETHLTWLCTCSASVTGVNLLLHLVVKPNVSSRRSSLSHKVTRVLKCCIYFLLSCFFLHIIFVLYGAPLIELVLETFLFAVILSTFTTIPCLCLLGPNLKAWLRVFSRNGVTSIWENSLQITTISSFIGAWLGAFPIPLDWERPWQFLWCHCYSPINQILQIKTSLWLIMLIESARKADKGMMGLAKCGDFARANFEKILLYKLCSLKYSTLLKDFSSPFLATHYTLDMFTLCSKQASLGYVLFIFWRNGSVWFL", "length": 291, "header": "tr|A0A9J7JPG0-1|A0A9J7JPG0_CRIGR Isoform 1 of Phosphatidylinositol-glycan biosynthesis class F protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Pigf PE=4 SV=1 CANONICAL=A0A9J7JPG0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LNK5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LNK5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LNK5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LNK5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100764893", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764893", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I5ZK79-1", "protein_name": "Phosphatidylinositol glycan anchor biosynthesis, class F", "gene_name": "Pigf", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKDTDIKRLLYTNLLCIFSVFLSIFIPSFFLDNFSILETHLVWLGTCSAFVTGANLLLYLVVKPNVSSKRSSLSHKVARVVRCWLYFLASCFFLHIIFVLYGAPLMELVLETFLFAVVLSTFTTVPCLCLLGPNLKAWLRVFSRNGVTSVWENSLQITTVSSFIGAWLGAFPIPLDWERPWQVWPISCTLGATFGYVAGLVISPLWIYWNRKQLTYKNN", "length": 219 }, "evidence": [ { "id": "A0A9J7JPG0", "url": "https://omabrowser.org/oma/group/A0A9J7JPG0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V0Z5T6-1", "protein_name": "Phosphatidylinositol glycan anchor biosynthesis class F", "gene_name": "PIGF", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKEAELRRLLAANLLCAGSIVLTALVPALFLDGFSVLGTHLTWLCICSVCVSVLNVTLCLILKPSPSSKRSSLSNKISRFLKCCIYFFMSCILFHAIIVLYGAPLIESVTETFLFAVLLSTFTTLQCLCLLGPNIQAWIRVFSRNGAMSIWENSLQITTTCSILGGWFGAFPIPLDWDRPWQVWPISCSLGATFGYMAGLIIAPLWIHWNRKQLTYKSR", "length": 219 }, "evidence": [ { "id": "A0A9J7JPG0", "url": "https://omabrowser.org/oma/group/A0A9J7JPG0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1S5M1-1", "protein_name": "Phosphatidylinositol glycan anchor biosynthesis class F", "gene_name": "PIGF", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MKDTDIKRLLYAHLLCIFSIILSIFIPSFFLENFSILETHLTWLCICSVFVTAVNLILYLVVKSNTSSKRSSLSYKVTRFLKCCIYLLLSCFSFHVVFVLYGAPLIELVLETFLLAVILSTFTTVPCLCLLGPNFKAWLRVFSRNGVTSIWENSLQITTISSFIGTWLGAFPIPLDWGRPWQEWPISCTLGATFGYVAGLVISPLWIYWNRKKLTYKSN", "length": 219 }, "evidence": [ { "id": "A0A9J7JPG0", "url": "https://omabrowser.org/oma/group/A0A9J7JPG0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "O09101-1", "protein_name": "GPI ethanolamine phosphate transferase, stabilizing subunit", "gene_name": "Pigf", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKDTDIKRLLYTNLLCVFSIFLSIFIPSFFVDNFSVLEAHLTWLCICSASVTTVNLLSYLVVKPNVSSKRSSLSHKVTRALKCCVCFLMSCFLLHIIFVLYGAPLIELVLETFLFAVVLSTFTTVPCLCLLGPNLKAWLRVFSRNGVTSIWENSLQITTISSFTGAWLGAFPIPLDWERPWQVWPISCTLGATFGYVAGLVISPLWIYWNRKQLTYKNN", "length": 219 }, "evidence": [ { "id": "A0A9J7JPG0", "url": "https://omabrowser.org/oma/group/A0A9J7JPG0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q07326-1", "protein_name": "GPI ethanolamine phosphate transferase, stabilizing subunit", "gene_name": "PIGF", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKDNDIKRLLYTHLLCIFSIILSVFIPSLFLENFSILETHLTWLCICSGFVTAVNLVLYLVVKPNTSSKRSSLSHKVTGFLKCCIYFLMSCFSFHVIFVLYGAPLIELALETFLFAVILSTFTTVPCLCLLGPNLKAWLRVFSRNGVTSIWENSLQITTISSFVGAWLGALPIPLDWERPWQVWPISCTLGATFGYVAGLVISPLWIYWNRKQLTYKNN", "length": 219 }, "evidence": [ { "id": "A0A9J7JPG0", "url": "https://omabrowser.org/oma/group/A0A9J7JPG0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JPG0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPG0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "GPI anchor biosynthetic process", "id": "GO:0006506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006506", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JPG0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPG0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 285, "end_pos": 287, "annotation": "n_glycosylation_sequon" }, { "start_pos": 33, "end_pos": 35, "annotation": "n_glycosylation_sequon" }, { "start_pos": 65, "end_pos": 67, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 285, "end_pos": 287 }, { "start_pos": 33, "end_pos": 35 }, { "start_pos": 65, "end_pos": 67 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 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"field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JUM9-1", "uniprot_ac": "A0A9J7JUM9", "uniprot_id": "A0A9J7JUM9_CRIGR", "mass": { "chemical_mass": 63956.0, "monoisotopic_mass": 63956.0 }, "refseq": { "ac": "XP_035295791", "name": "E3 ubiquitin-protein ligase RNF38 isoform X5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295791" }, "gene_names": [ { "name": "Rnf38", "type": "recommended", "evidence": [ { "id": "A0A9J7JUM9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUM9" } ] }, { "name": "Rnf38", "type": "synonym", "evidence": [ { "id": "XP_035295791", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295791" } ] } ], "protein_names": [ { "name": "E3 ubiquitin-protein ligase RNF38 isoform X5", "type": "synonym", "evidence": [ { "id": "XP_035295791", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295791" }, { "id": "A0A9J7JUM9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUM9/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035295791", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295791" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JUM9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUM9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Rnf38", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUM9", "locus": {} } ], "crossref": [ { "id": "A0A9J7JUM9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JUM9", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd16679", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16679", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100758696", "url": "https://www.ncbi.nlm.nih.gov/gene/100758696", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100758696", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758696", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2LSU2", "url": "https://www.orthodb.org/?gene=A0A8C2LSU2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JUM9", "url": "https://www.orthodb.org/?gene=A0A9J7JUM9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46171", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46171", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46171:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46171:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13639", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13639", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035295791", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295791", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LSU2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LSU2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LSU2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LSU2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GQM4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GQM4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GQM4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GQM4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GRX3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GRX3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GRX3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GRX3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JAR6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAR6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JAR6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAR6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JUM9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUM9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JUM9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUM9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVPGGRKRRDSASVGTQVPGARRPGDGGPGELAAGGRSGHNRRRRPGPERREQLRRAEPPFAGTGPGGRWLPREGRTGRGRLGVGRRRLAVVSRQPGGLCPRCGGEPARPCLAETQSEDSPSPKRQRLSHSVFDYTSASPAPSPPMRPWEMTSNRQPPSVRPNQHHFSGERCNTPARNRRSPPVRRQRGRRDRLSRHNSISQDENYHHLPYAQQQAIEEPRAFHPPNVSPRLLHPAAHPPQQNAVMVDIHDQLHQGTVPVSYTVTTVAPHGIPLCTGQHIPACSTQQVPGCSVVFSGQHLPVCSVPPPMLQACSVQHLPVPYAAFPPLISSDPFLIHPPHLSPHHPPHLPPPGQFVPFQTQQSRSPLQRIENEVELLGEHLQVGSFTYPPSAHPPALPPSAPLQFLAHDPLHQEVSFGVPYPPFMPRRLTGRSRYRSQQPIPPPPYHPSLLPYVLSMLPVPPAVGPTFSFELDVEDGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKGNRTCPICRADASEVHRDSE", "length": 577, "header": "tr|A0A9J7JUM9-1|A0A9J7JUM9_CRIGR Isoform 1 of E3 ubiquitin-protein ligase RNF38 isoform X5 OS=Cricetulus griseus OX=10029 GN=Rnf38 PE=4 SV=1 CANONICAL=A0A9J7JUM9-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LSU2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LSU2/entry", "sequence": { "sequence": "MRESEDSPSPKRQRLSHSVFDYTSASPAPSPPMRPWEMTSNRQPPSVRPNQHHFSGERCNTPARNRRSPPVRRQRGRRDRLSRHNSISQDENYHHLPYAQQQAIEEPRAFHPPNVSPRLLHPAAHPPQQNAVMVDIHDQLHQGTVPVSYTVTTVAPHGIPLCTGQHIPACSTQQVPGCSVVFSGQHLPVCSVPPPMLQACSVQHLPVPYAAFPPLISSDPFLIHPPHLSPHHPPHLPPPGQFVPFQTQQSRSPLQRIENEVELLGEHLQVGSFTYPPSAHPPALPPSAPLQFLAHDPLHQEVSFGVPYPPFMPRRLTGRSRYRSQQPIPPPPYHPSLLPYVLSMLPVPPAVGPTFSFELDVEDGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKGNRTCPICRADASEVHRDSE", "length": 464, "header": "tr|A0A8C2LSU2-1|A0A9J7JUM9_CRIGR Computationally mapped isoform of E3 ubiquitin-protein ligase RNF38 isoform X5 OS=Cricetulus griseus OX=10029 GN=Rnf38 PE=4 SV=1 CANONICAL=A0A9J7JUM9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GQM4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GQM4/entry", "sequence": { "sequence": "MRPWEMTSNRQPPSVRPNQHHFSGERCNTPARNRRSPPVRRQRGRRDRLSRHNSISQDENYHHLPYAQQQAIEEPRAFHPPNVSPRLLHPAAHPPQQNAVMVDIHDQVTFSQKFYFLCKKLHQGTVPVSYTVTTVAPHGIPLCTGQHIPACSTQQVPGCSVVFSGQHLPVCSVPPPMLQACSVQHLPVPYAAFPPLISSDPFLIHPPHLSPHHPPHLPPPGQFVPFQTQQSRSPLQRIENEVELLGEHLQVGSFTYPPSAHPPALPPSAPLQFLAHDPLHQEVSFGVPYPPFMPRRLTGRSRYRSQQPIPPPPYHPSLLPYVLSMLPVPPAVGPTFSFELDVEDGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKGNRTCPICRADASEVHRDSE", "length": 445, "header": "tr|A0A9J7GQM4-1|A0A9J7GQM4_CRIGR Computationally mapped isoform of E3 ubiquitin-protein ligase RNF38 isoform X3 OS=Cricetulus griseus OX=10029 GN=Rnf38 PE=4 SV=1 CANONICAL=A0A9J7JUM9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GRX3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GRX3/entry", "sequence": { "sequence": "MRESEDSPSPKRQRLSHSVFDYTSASPAPSPPMRPWEMTSNRQPPSVRPNQHHFSGERCNTPARNRRSPPVRRQRGRRDRLSRHNSISQDENYHHLPYAQQQAIEEPRAFHPPNVSPRLLHPAAHPPQQNAVMVDIHDQVTFSQKFYFLCKKLHQGTVPVSYTVTTVAPHGIPLCTGQHIPACSTQQVPGCSVVFSGQHLPVCSVPPPMLQACSVQHLPVPYAAFPPLISSDPFLIHPPHLSPHHPPHLPPPGQFVPFQTQQSRSPLQRIENEVELLGEHLQVGSFTYPPSAHPPALPPSAPLQFLAHDPLHQEVSFGVPYPPFMPRRLTGRSRYRSQQPIPPPPYHPSLLPYVLSMLPVPPAVGPTFSFELDVEDGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKGNRTCPICRADASEVHRDSE", "length": 477, "header": "tr|A0A9J7GRX3-1|A0A9J7GRX3_CRIGR Computationally mapped isoform of E3 ubiquitin-protein ligase RNF38 isoform X1 OS=Cricetulus griseus OX=10029 GN=Rnf38 PE=4 SV=1 CANONICAL=A0A9J7JUM9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JAR6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAR6/entry", "sequence": { "sequence": "MRPWEMTSNRQPPSVRPNQHHFSGERCNTPARNRRSPPVRRQRGRRDRLSRHNSISQDENYHHLPYAQQQAIEEPRAFHPPNVSPRLLHPAAHPPQQNAVMVDIHDQLHQGTVPVSYTVTTVAPHGIPLCTGQHIPACSTQQVPGCSVVFSGQHLPVCSVPPPMLQACSVQHLPVPYAAFPPLISSDPFLIHPPHLSPHHPPHLPPPGQFVPFQTQQSRSPLQRIENEVELLGEHLQVGSFTYPPSAHPPALPPSAPLQFLAHDPLHQEVSFGVPYPPFMPRRLTGRSRYRSQQPIPPPPYHPSLLPYVLSMLPVPPAVGPTFSFELDVEDGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKGNRTCPICRADASEVHRDSE", "length": 432, "header": "tr|A0A9J7JAR6-1|A0A9J7JAR6_CRIGR Computationally mapped isoform of E3 ubiquitin-protein ligase RNF38 isoform X4 OS=Cricetulus griseus OX=10029 GN=Rnf38 PE=4 SV=1 CANONICAL=A0A9J7JUM9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JUM9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUM9/entry", "sequence": { "sequence": "MVPGGRKRRDSASVGTQVPGARRPGDGGPGELAAGGRSGHNRRRRPGPERREQLRRAEPPFAGTGPGGRWLPREGRTGRGRLGVGRRRLAVVSRQPGGLCPRCGGEPARPCLAETQSEDSPSPKRQRLSHSVFDYTSASPAPSPPMRPWEMTSNRQPPSVRPNQHHFSGERCNTPARNRRSPPVRRQRGRRDRLSRHNSISQDENYHHLPYAQQQAIEEPRAFHPPNVSPRLLHPAAHPPQQNAVMVDIHDQLHQGTVPVSYTVTTVAPHGIPLCTGQHIPACSTQQVPGCSVVFSGQHLPVCSVPPPMLQACSVQHLPVPYAAFPPLISSDPFLIHPPHLSPHHPPHLPPPGQFVPFQTQQSRSPLQRIENEVELLGEHLQVGSFTYPPSAHPPALPPSAPLQFLAHDPLHQEVSFGVPYPPFMPRRLTGRSRYRSQQPIPPPPYHPSLLPYVLSMLPVPPAVGPTFSFELDVEDGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKGNRTCPICRADASEVHRDSE", "length": 577, "header": "tr|A0A9J7JUM9-1|A0A9J7JUM9_CRIGR Isoform 1 of E3 ubiquitin-protein ligase RNF38 isoform X5 OS=Cricetulus griseus OX=10029 GN=Rnf38 PE=4 SV=1 CANONICAL=A0A9J7JUM9-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 467, "start_aa": "Thr", "end_pos": 467, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr467", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LSU2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LSU2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LSU2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LSU2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100758696", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758696", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JUM9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUM9" } ], "pmid": "" }, { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JUM9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUM9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JUM9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUM9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 227, "end_pos": 229, "annotation": "n_glycosylation_sequon" }, { "start_pos": 559, "end_pos": 561, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JUM9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUM9" }, { "id": "PS50089", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RING-type", "eco_id": "ECO_0000259", "start_pos": 525, "end_pos": 566, "start_aa": "Cys", "end_aa": "Arg", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 467 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 227, "end_pos": 229 }, { "start_pos": 559, "end_pos": 561 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JMT0-1", "uniprot_ac": "A0A9J7JMT0", "uniprot_id": "A0A9J7JMT0_CRIGR", "mass": { "chemical_mass": 96908.0, "monoisotopic_mass": 96908.0 }, "refseq": { "ac": "XP_027279586", "name": "SH2 domain-containing protein 3C isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027279586" }, "gene_names": [ { "name": "Sh2d3c", "type": "recommended", "evidence": [ { "id": "A0A9J7JMT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMT0" } ] }, { "name": "Sh2d3c", "type": "synonym", "evidence": [ { "id": "XP_027279586", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027279586" } ] } ], "protein_names": [ { "name": "SH2 domain-containing protein 3C isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027279586", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027279586" }, { "id": "A0A9J7JMT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMT0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027279586", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027279586" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JMT0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMT0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Sh2d3c", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMT0", "locus": {} } ], "crossref": [ { "id": "A0A9J7JMT0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JMT0", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd10337", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd10337", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100759629", "url": "https://www.ncbi.nlm.nih.gov/gene/100759629", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000980", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000980", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001895", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001895", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023578", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023578", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036860", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036860", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036964", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036964", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044102", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044102", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051853", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051853", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759629", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759629", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JMT0", "url": "https://www.orthodb.org/?gene=A0A9J7JMT0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14247", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14247", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14247:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14247:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00017", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00017", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00617", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00617", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027279586", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027279586", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LWL3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LWL3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LWL3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LWL3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LY59", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LY59", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LY59-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LY59-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G873", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G873", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G873-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G873-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G943", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G943", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G943-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G943-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JMT0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMT0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JMT0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMT0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JV52", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JV52", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JV52-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JV52-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTEMPKKTGKKFKFFKFKGLGSLSNLPRSFSLRRSSASISIRSYLEPDTFEATQDDMVTVPKSPPAYARSSDMYSHMGTMPRPNIKKVRQQQAAQKAQEVSLQSHLVPQGLEAAKEAVERKDAPLEDTPGVGPTPSAVEVDPLRKPEEPRVDTKEEQIPGDVYPERATGELEAAGDYVKRTGFQPFTATLGLCGAGHQTRGLLQFSKEKYILDSSPEKLHKELEEELKLNSTDLRSHAWYHGRIPREVSETLVQRNGDFLIRDSLTSLGDYVLTCRWHNQALHFKINKVVVKAGESYTHIQYLFEQESFDHVPALVRYHVGSRKAVSEQSGAIIYCPVNRTFPLRYLEASYGLSQASSKAASPVSPSGSKGSHMKRRSITMTDGLTTDKVTRSDGCPNSTSLPHPRDSIRNCALSMDQIPDLHSPLSPISESPSSPAYSTVTRVHAAPTTPSTTAPPASPVARRPSEPQSSHGSTPKPPVESDKPHASPSHTLCKASRSPSLNSYSDPDSGHYCQLQPSVRGSREWAAGETPRKTRSSGERQKELSENGVSDGEWGKPFAVPVVEATSSFNLATFQSQLIPKENRPLEVGLLRKVKELLSEVDARTLARHVTKVDCLVARILGVTKEMQTLMGVRWGMELLTLPHGRQLRLDLLERFHTMSIMLAVDILGCTGSAEERAALLHKTIQLAAELRGTMGNMFSFAAVMGALEMAQISRLEQTWVTLRQRHTEGAILYEKKLKPFLKGLNEGKESLPLSNTTFPHVLPFITLLECDSAPTEGPEPWGSTEHGVEVVLAHLEAARTVAHHGGLYHTNAEAKLQGFQARPELLEVFSTEFQMRLLWGSQGANSSQARRYEKFDKVLTALSHKLEPAIRSSEL", "length": 877, "header": "tr|A0A9J7JMT0-1|A0A9J7JMT0_CRIGR Isoform 1 of SH2 domain-containing protein 3C isoform X2 OS=Cricetulus griseus OX=10029 GN=Sh2d3c PE=4 SV=1 CANONICAL=A0A9J7JMT0-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LWL3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LWL3/entry", "sequence": { "sequence": "MTEMPKKTGKKFKFFKFKGLGSLSNLPRSFSLRRSSASISIRSYLEPDTFEATQDDMVTVPKSPPAYARSSDMYSHMGTMPRPNIKKVRQQQAAQKAQEVSLQSHLVPQGLEAAKEAVERKDAPLEDTPGVGPTPSAVEVDPLRKPEEPRVDTKEEQIPGDVYPERATGELEAAGDYVKFSKEKYILDSSPEKLHKELEEELKLNSTDLRSHAWYHGRIPREVSETLVQRNGDFLIRDSLTSLGDYVLTCRWHNQALHFKINKVVVKAGESYTHIQYLFEQESFDHVPALVRYHVGSRKAVSEQSGAIIYCPVNRTFPLRYLEASYGLSQASSKAASPVSPSGSKGSHMKRRSITMTDGLTTDKVTRSDGCPNSTSLPHPRDSIRNCALSMDQIPDLHSPLSPISESPSSPAYSTVTRVHAAPTTPSTTAPPASPVARRPSEPQSSHGSTPKPPVESDKPHASPSHTLCKASRSPSLNSYSDPDSGHYCQLQPSVRGSREWAAGETPRKTRSSGERQKELSENGVSDGEWGKPFAVPVVEATSSFNLATFQSQLIPKENRPLEVGLLRKVKELLSEVDARTLARHVTKVDCLVARILGVTKEMQTLMGVRWGMELLTLPHGRQLRLDLLERFHTMSIMLAVDILGCTGSAEERAALLHKTIQLAAELRGTMGNMFSFAAVMGALEMAQISRLEQTWVTLRQRHTEGAILYEKKLKPFLKGLNEGKESLPLSNTTFPHVLPFITLLECDSAPTEGPEPWGSTEHGVEVVLAHLEAARTVAHHGGLYHTNAEAKLQGFQARPELLEVFSTEFQMRLLWGSQGANSSQARRYEKFDKVLTALSHKLEPAIRSSEL", "length": 852, "header": "tr|A0A8C2LWL3-1|A0A9J7JMT0_CRIGR Computationally mapped isoform of SH2 domain-containing protein 3C isoform X2 OS=Cricetulus griseus OX=10029 GN=Sh2d3c PE=4 SV=1 CANONICAL=A0A9J7JMT0-1" }, "locus": {} }, { "isoform_ac": "A0A8C2LY59-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LY59/entry", "sequence": { "sequence": "MTAVGRRCSALGPRRATGELEAAGDYVKFSKEKYILDSSPEKLHKELEEELKLNSTDLRSHAWYHGRIPREVSETLVQRNGDFLIRDSLTSLGDYVLTCRWHNQALHFKINKVVVKAGESYTHIQYLFEQESFDHVPALVRYHVGSRKAVSEQSGAIIYCPVNRTFPLRYLEASYGLSQASSKAASPVSPSGSKGSHMKRRSITMTDGLTTDKVTRSDGCPNSTSLPHPRDSIRNCALSMDQIPDLHSPLSPISESPSSPAYSTVTRVHAAPTTPSTTAPPASPVARRPSEPQSSHGSTPKPPVESDKPHASPSHTLCKASRSPSLNSYSDPDSGHYCQLQPSVRGSREWAAGETPRKTRSSGERQKELSENGVSDGEWGKPFAVPVVEATSSFNLATFQSQLIPKENRPLEVGLLRKVKELLSEVDARTLARHVTKVDCLVARILGVTKEMQTLMGVRWGMELLTLPHGRQLRLDLLERFHTMSIMLAVDILGCTGSAEERAALLHKTIQLAAELRGTMGNMFSFAAVMGALEMAQISRLEQTWVTLRQRHTEGAILYEKKLKPFLKGLNEGKESLPLSNTTFPHVLPFITLLECDSAPTEGPEPWGSTEHGVEVVLAHLEAARTVAHHGGLYHTNAEAKLQGFQARPELLEVFSTEFQMRLLWGSQGANSSQARRYEKFDKVLTALSHKLEPAIRSSEL", "length": 701, "header": "tr|A0A8C2LY59-1|A0A9J7JMT0_CRIGR Computationally mapped isoform of SH2 domain-containing protein 3C isoform X2 OS=Cricetulus griseus OX=10029 GN=Sh2d3c PE=4 SV=1 CANONICAL=A0A9J7JMT0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G873-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G873/entry", "sequence": { "sequence": "MVKRARSSRLATGELEAAGDYVKFSKEKYILDSSPEKLHKELEEELKLNSTDLRSHAWYHGRIPREVSETLVQRNGDFLIRDSLTSLGDYVLTCRWHNQALHFKINKVVVKAGESYTHIQYLFEQESFDHVPALVRYHVGSRKAVSEQSGAIIYCPVNRTFPLRYLEASYGLSQASSKAASPVSPSGSKGSHMKRRSITMTDGLTTDKVTRSDGCPNSTSLPHPRDSIRNCALSMDQIPDLHSPLSPISESPSSPAYSTVTRVHAAPTTPSTTAPPASPVARRPSEPQSSHGSTPKPPVESDKPHASPSHTLCKASRSPSLNSYSDPDSGHYCQLQPSVRGSREWAAGETPRKTRSSGERQKELSENGVSDGEWGKPFAVPVVEATSSFNLATFQSQLIPKENRPLEVGLLRKVKELLSEVDARTLARHVTKVDCLVARILGVTKEMQTLMGVRWGMELLTLPHGRQLRLDLLERFHTMSIMLAVDILGCTGSAEERAALLHKTIQLAAELRGTMGNMFSFAAVMGALEMAQISRLEQTWVTLRQRHTEGAILYEKKLKPFLKGLNEGKESLPLSNTTFPHVLPFITLLECDSAPTEGPEPWGSTEHGVEVVLAHLEAARTVAHHGGLYHTNAEAKLQGFQARPELLEVFSTEFQMRLLWGSQGANSSQARRYEKFDKVLTALSHKLEPAIRSSEL", "length": 696, "header": "tr|A0A9J7G873-1|A0A9J7JMT0_CRIGR Computationally mapped isoform of SH2 domain-containing protein 3C isoform X2 OS=Cricetulus griseus OX=10029 GN=Sh2d3c PE=4 SV=1 CANONICAL=A0A9J7JMT0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G943-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G943/entry", "sequence": { "sequence": "MVKRARSSRLATGELEAAGDYVKRTGFQPFTATLGLCGAGHQTRGLLQFSKEKYILDSSPEKLHKELEEELKLNSTDLRSHAWYHGRIPREVSETLVQRNGDFLIRDSLTSLGDYVLTCRWHNQALHFKINKVVVKAGESYTHIQYLFEQESFDHVPALVRYHVGSRKAVSEQSGAIIYCPVNRTFPLRYLEASYGLSQASSKAASPVSPSGSKGSHMKRRSITMTDGLTTDKVTRSDGCPNSTSLPHPRDSIRNCALSMDQIPDLHSPLSPISESPSSPAYSTVTRVHAAPTTPSTTAPPASPVARRPSEPQSSHGSTPKPPVESDKPHASPSHTLCKASRSPSLNSYSDPDSGHYCQLQPSVRGSREWAAGETPRKTRSSGERQKELSENGVSDGEWGKPFAVPVVEATSSFNLATFQSQLIPKENRPLEVGLLRKVKELLSEVDARTLARHVTKVDCLVARILGVTKEMQTLMGVRWGMELLTLPHGRQLRLDLLERFHTMSIMLAVDILGCTGSAEERAALLHKTIQLAAELRGTMGNMFSFAAVMGALEMAQISRLEQTWVTLRQRHTEGAILYEKKLKPFLKGLNEGKESLPLSNTTFPHVLPFITLLECDSAPTEGPEPWGSTEHGVEVVLAHLEAARTVAHHGGLYHTNAEAKLQGFQARPELLEVFSTEFQMRLLWGSQGANSSQARRYEKFDKVLTALSHKLEPAIRSSEL", "length": 721, "header": "tr|A0A9J7G943-1|A0A9J7JMT0_CRIGR Computationally mapped isoform of SH2 domain-containing protein 3C isoform X2 OS=Cricetulus griseus OX=10029 GN=Sh2d3c PE=4 SV=1 CANONICAL=A0A9J7JMT0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JMT0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMT0/entry", "sequence": { "sequence": "MTEMPKKTGKKFKFFKFKGLGSLSNLPRSFSLRRSSASISIRSYLEPDTFEATQDDMVTVPKSPPAYARSSDMYSHMGTMPRPNIKKVRQQQAAQKAQEVSLQSHLVPQGLEAAKEAVERKDAPLEDTPGVGPTPSAVEVDPLRKPEEPRVDTKEEQIPGDVYPERATGELEAAGDYVKRTGFQPFTATLGLCGAGHQTRGLLQFSKEKYILDSSPEKLHKELEEELKLNSTDLRSHAWYHGRIPREVSETLVQRNGDFLIRDSLTSLGDYVLTCRWHNQALHFKINKVVVKAGESYTHIQYLFEQESFDHVPALVRYHVGSRKAVSEQSGAIIYCPVNRTFPLRYLEASYGLSQASSKAASPVSPSGSKGSHMKRRSITMTDGLTTDKVTRSDGCPNSTSLPHPRDSIRNCALSMDQIPDLHSPLSPISESPSSPAYSTVTRVHAAPTTPSTTAPPASPVARRPSEPQSSHGSTPKPPVESDKPHASPSHTLCKASRSPSLNSYSDPDSGHYCQLQPSVRGSREWAAGETPRKTRSSGERQKELSENGVSDGEWGKPFAVPVVEATSSFNLATFQSQLIPKENRPLEVGLLRKVKELLSEVDARTLARHVTKVDCLVARILGVTKEMQTLMGVRWGMELLTLPHGRQLRLDLLERFHTMSIMLAVDILGCTGSAEERAALLHKTIQLAAELRGTMGNMFSFAAVMGALEMAQISRLEQTWVTLRQRHTEGAILYEKKLKPFLKGLNEGKESLPLSNTTFPHVLPFITLLECDSAPTEGPEPWGSTEHGVEVVLAHLEAARTVAHHGGLYHTNAEAKLQGFQARPELLEVFSTEFQMRLLWGSQGANSSQARRYEKFDKVLTALSHKLEPAIRSSEL", "length": 877, "header": "tr|A0A9J7JMT0-1|A0A9J7JMT0_CRIGR Isoform 1 of SH2 domain-containing protein 3C isoform X2 OS=Cricetulus griseus OX=10029 GN=Sh2d3c PE=4 SV=1 CANONICAL=A0A9J7JMT0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JV52-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JV52/entry", "sequence": { "sequence": "MTAVGRRCSALGPRRATGELEAAGDYVKRTGFQPFTATLGLCGAGHQTRGLLQFSKEKYILDSSPEKLHKELEEELKLNSTDLRSHAWYHGRIPREVSETLVQRNGDFLIRDSLTSLGDYVLTCRWHNQALHFKINKVVVKAGESYTHIQYLFEQESFDHVPALVRYHVGSRKAVSEQSGAIIYCPVNRTFPLRYLEASYGLSQASSKAASPVSPSGSKGSHMKRRSITMTDGLTTDKVTRSDGCPNSTSLPHPRDSIRNCALSMDQIPDLHSPLSPISESPSSPAYSTVTRVHAAPTTPSTTAPPASPVARRPSEPQSSHGSTPKPPVESDKPHASPSHTLCKASRSPSLNSYSDPDSGHYCQLQPSVRGSREWAAGETPRKTRSSGERQKELSENGVSDGEWGKPFAVPVVEATSSFNLATFQSQLIPKENRPLEVGLLRKVKELLSEVDARTLARHVTKVDCLVARILGVTKEMQTLMGVRWGMELLTLPHGRQLRLDLLERFHTMSIMLAVDILGCTGSAEERAALLHKTIQLAAELRGTMGNMFSFAAVMGALEMAQISRLEQTWVTLRQRHTEGAILYEKKLKPFLKGLNEGKESLPLSNTTFPHVLPFITLLECDSAPTEGPEPWGSTEHGVEVVLAHLEAARTVAHHGGLYHTNAEAKLQGFQARPELLEVFSTEFQMRLLWGSQGANSSQARRYEKFDKVLTALSHKLEPAIRSSEL", "length": 726, "header": "tr|A0A9J7JV52-1|A0A9J7JV52_CRIGR Computationally mapped isoform of SH2 domain-containing protein 3C isoform X4 OS=Cricetulus griseus OX=10029 GN=Sh2d3c PE=4 SV=1 CANONICAL=A0A9J7JMT0-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 134, "start_aa": "Thr", "end_pos": 134, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr134", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LWL3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LWL3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LWL3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LWL3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100759629", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759629", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "phosphotyrosine residue binding", "id": "GO:0001784", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001784", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JMT0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMT0" } ], "pmid": "" }, { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JMT0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMT0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JMT0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMT0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "small GTPase-mediated signal transduction", "id": "GO:0007264", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007264", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JMT0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMT0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 230, "end_pos": 232, "annotation": "n_glycosylation_sequon" }, { "start_pos": 339, "end_pos": 341, "annotation": "n_glycosylation_sequon" }, { "start_pos": 398, "end_pos": 400, "annotation": "n_glycosylation_sequon" }, { "start_pos": 757, "end_pos": 759, "annotation": "n_glycosylation_sequon" }, { "start_pos": 847, "end_pos": 849, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JMT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMT0" }, { "id": "PS50009", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50009" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ras-GEF", "eco_id": "ECO_0000259", "start_pos": 603, "end_pos": 871, "start_aa": "Asp", "end_aa": "Ala", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7JMT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMT0" }, { "id": "PS50001", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50001" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SH2", "eco_id": "ECO_0000259", "start_pos": 239, "end_pos": 338, "start_aa": "Trp", "end_aa": "Val", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 134 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 230, "end_pos": 232 }, { "start_pos": 339, "end_pos": 341 }, { "start_pos": 398, "end_pos": 400 }, { "start_pos": 757, "end_pos": 759 }, { "start_pos": 847, "end_pos": 849 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { 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"sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JJT4-1", "uniprot_ac": "A0A9J7JJT4", "uniprot_id": "A0A9J7JJT4_CRIGR", "mass": { "chemical_mass": 53622.0, "monoisotopic_mass": 53622.0 }, "refseq": { "ac": "XP_007653088", "name": "lactadherin isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007653088" }, "gene_names": [ { "name": "Mfge8", "type": "recommended", "evidence": [ { "id": "A0A9J7JJT4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJT4" } ] }, { "name": "Mfge8", "type": "synonym", "evidence": [ { "id": "XP_007653088", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007653088" } ] } ], "protein_names": [ { "name": "Lactadherin isoform X5", "type": "synonym", "evidence": [ { "id": "A0A9J7JJT4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJT4/entry#names_and_taxonomy" } ] }, { "name": "lactadherin isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007653088", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007653088" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 1140 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003617037.1) and transcript sequence (IACG01087202.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 27, 2016 this sequence version replaced XP_007653088.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007653088", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007653088" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JJT4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJT4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Mfge8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJT4", "locus": {} } ], "crossref": [ { "id": "A0A9J7JJT4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JJT4", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00054", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00054", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd00057", "url": 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"https://www.ebi.ac.uk/interpro/entry/pfam/PF00754", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007653088", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007653088", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LXD0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LXD0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LXD0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LXD0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FMX7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMX7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FMX7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMX7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JJT4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJT4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JJT4-1", "url": 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"MPLSRALAVLCGVLLCASGLFAVSGDFCDSSLCQNGGTCLISQDNDVYCLCPEGFTGLVCSETEKGPCSPNPCYNDGKCQVTENTQRGDIFTQYICQCSLGYSGTHCEISCTSTLGMEGGAIANSQISASSVYVGFLGVQRWGPELARLHSSGLVNAWTASDYDSKPWIQVNLLRKMRVSGVITQGASRAGRAEYLKTFKVAYSLDGLKFKFIQNASGSGDKVFWGNMDNNGLKVNMFSPSLEAQYIRLYPVSCYRACTLRFELLGCELNGCSEPLGLKNNSIPDSHMTASSTYKTWNLRAFGWYPHYGRLDMQGKINAWTAQSNSNKEWLQVDLCTQRHVTGIITQGARDFGQVQYVASYKVAHSNDGVEWTIYKEQGTDKVFLGNSDNNSHKKNIFETPIVARYVRVLPVSWHKRITLRLELLGC", "length": 427, "header": "tr|A0A8C2LXD0-1|A0A9J7JJT4_CRIGR Computationally mapped isoform of Lactadherin isoform X5 OS=Cricetulus griseus OX=10029 GN=Mfge8 PE=4 SV=1 CANONICAL=A0A9J7JJT4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FMX7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMX7/entry", "sequence": { "sequence": "MPLSRALAVLCGVLLCASGLFAVSGDFCDSSLCQNGGTCLISQDNDVYCLCPEGFTGLVCSETEKGPCSPNPCYNDGKCQVTENTQRGDIFTQYICQCSLGYSGTHCEITTYPGQAIAEVLKKKLSGASFPPVNETIYYNLEGDYLSTTAVPIPVPNPGLSNSLASSCTSTLGMEGGAIANSQISASSVYVGFLGVQRWGPELARLHSSGLVNAWTASDYDSKPWIQVNLLRKMRVSGVITQGASRAGRAEYLKTFKVAYSLDGLKFKFIQNASGSGDKVFWGNMDNNGLKVNMFSPSLEAQYIRLYPVSCYRACTLRFELLGCELNGCSEPLGLKNNSIPDSHMTASSTYKTWNLRAFGWYPHYGRLDMQGKINAWTAQSNSNKEWLQVDLCTQRHVTGIITQGARDFGQVQYVASYKVAHSNDGVEWTIYKEQGTDKVFLGNSDNNSHKKNIFETPIVARYVRVLPVSWHKRITLRLELLGC", "length": 484, "header": "tr|A0A9J7FMX7-1|A0A9J7JJT4_CRIGR Computationally mapped isoform of Lactadherin isoform X5 OS=Cricetulus griseus OX=10029 GN=Mfge8 PE=4 SV=1 CANONICAL=A0A9J7JJT4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JJT4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJT4/entry", "sequence": { "sequence": "MPLSRALAVLCGVLLCASGLFAVSGDFCDSSLCQNGGTCLISQDNDVYCLCPEGFTGLVCSETEKGPCSPNPCYNDGKCQVTENTQRGDIFTQYICQCSLGYSGTHCEISTSSPKATYPGQAIAEVLKKKLSGASFPPVNETIYYNLEGDYLSTTAVPIPVPNPGLSNSLASSCTSTLGMEGGAIANSQISASSVYVGFLGVQRWGPELARLHSSGLVNAWTASDYDSKPWIQVNLLRKMRVSGVITQGASRAGRAEYLKTFKVAYSLDGLKFKFIQNASGSGDKVFWGNMDNNGLKVNMFSPSLEAQYIRLYPVSCYRACTLRFELLGCELNGCSEPLGLKNNSIPDSHMTASSTYKTWNLRAFGWYPHYGRLDMQGKINAWTAQSNSNKEWLQVDLCTQRHVTGIITQGARDFGQVQYVASYKVAHSNDGVEWTIYKEQGTDKVFLGNSDNNSHKKNIFETPIVARYVRVLPVSWHKRITLRLELLGC", "length": 490, "header": "tr|A0A9J7JJT4-1|A0A9J7JJT4_CRIGR Isoform 1 of Lactadherin isoform X5 OS=Cricetulus griseus OX=10029 GN=Mfge8 PE=4 SV=1 CANONICAL=A0A9J7JJT4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LXD0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LXD0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LXD0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LXD0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100774737", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774737", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JJT4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJT4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cell adhesion", "id": "GO:0007155", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007155", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JJT4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJT4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "signaling receptor activity", "id": "GO:0038023", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0038023", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JJT4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJT4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 140, "end_pos": 142, "annotation": "n_glycosylation_sequon" }, { "start_pos": 278, "end_pos": 280, "annotation": "n_glycosylation_sequon" }, { "start_pos": 343, "end_pos": 345, "annotation": "n_glycosylation_sequon" }, { "start_pos": 453, "end_pos": 455, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { 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analysis. This record is derived from a genomic sequence (NW_003613737.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007638383", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007638383" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JSR4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSR4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "C5H2orf76", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSR4", "locus": {} } ], "crossref": [ { "id": "100761351", "url": "https://www.ncbi.nlm.nih.gov/gene/100761351", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR018794", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018794", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100761351", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761351", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YRNVKNH", "url": "https://omabrowser.org/oma/group/YRNVKNH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2M0R6", "url": "https://www.orthodb.org/?gene=A0A8C2M0R6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JSR4", "url": "https://www.orthodb.org/?gene=A0A9J7JSR4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR18444", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18444", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR18444:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18444:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10209", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10209", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007638383", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007638383", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M0R6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M0R6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M0R6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M0R6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JSR4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSR4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JSR4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSR4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCSEELNSVLTLGQYSLHMAAEEATVTVRLIRSFEHRNFKPVVYHRVNLDQTVKEFIIFLKQDVPLRTSLPPPLRNYKYDTLKILHQAHKAKTNELVLGLEDDDTLLLKEDRTLKDSGIASETEIAFFCEEDYKRYKANPTSSW", "length": 144, "header": "tr|A0A9J7JSR4-1|A0A9J7JSR4_CRIGR Isoform 1 of UPF0538 protein C2orf76 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=C5H2orf76 PE=3 SV=1 CANONICAL=A0A9J7JSR4-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M0R6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M0R6/entry", "sequence": { "sequence": "MAAEEATVTVRLIRSFEHRNFKPVVYHRVNLDQTVKEFIIFLKQDVPLRTSLPPPLRNYKYDTLKILHQAHKAKTNELVLGLEDDDTLLLKEDRTLKDSGIASETEIAFFCEEDYKRYKANPTSSW", "length": 126, "header": "tr|A0A8C2M0R6-1|A0A9J7JSR4_CRIGR Computationally mapped isoform of UPF0538 protein C2orf76 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=C5H2orf76 PE=3 SV=1 CANONICAL=A0A9J7JSR4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JSR4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSR4/entry", "sequence": { "sequence": "MCSEELNSVLTLGQYSLHMAAEEATVTVRLIRSFEHRNFKPVVYHRVNLDQTVKEFIIFLKQDVPLRTSLPPPLRNYKYDTLKILHQAHKAKTNELVLGLEDDDTLLLKEDRTLKDSGIASETEIAFFCEEDYKRYKANPTSSW", "length": 144, "header": "tr|A0A9J7JSR4-1|A0A9J7JSR4_CRIGR Isoform 1 of UPF0538 protein C2orf76 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=C5H2orf76 PE=3 SV=1 CANONICAL=A0A9J7JSR4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M0R6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M0R6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M0R6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M0R6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100761351", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761351", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZFQ3-1", "protein_name": "C2orf76 homolog", "gene_name": "C2orf76", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSAESSTITVRLVRSFEHRNFRPVVYHGVNLDQTVKQFIAFVQKDVPSRTGLPPPFKTYKYDTMKIIHQAHKSKTGDLVVSLEDDDNLILKEDSTLKAAGVANETELAFFCEEDYRSYKANPVSAW", "length": 126 }, "evidence": [ { "id": "A0A9J7JSR4", "url": "https://omabrowser.org/oma/group/A0A9J7JSR4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0ABK0M1X1-1", "protein_name": "Similar to chromosome 2 open reading frame 76", "gene_name": "C13h2orf76", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAVEEATITVRLIRSFEHRNFKPVVYHRVNLHQTVKEFIIFLKQDVPSRTSLPPPLRNYKYDTLKILHQAHKAKTNELVLGLEDDDTLLLKEDRTLKDSGVGAVSASLDISAQKFPICQRQFCAL", "length": 125 }, "evidence": [ { "id": "A0A9J7JSR4", "url": "https://omabrowser.org/oma/group/A0A9J7JSR4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P36154-1", "protein_name": "Altered inheritance rate of mitochondria protein 29", "gene_name": "AIM29", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MNSTKRLKMSTTFHDYDLEEPLTSNARPLKNSVITIRVIKSFPYRNVKNIVLHDYDLADKTAKDLFNDVLNKIQNEGSFRPFRNVKFDTLKIYTHAHGSKTVNLVINFDHDDDWTLDIENDKKKLFEYGIENETEISLFNKEDYLRFKENPEEKW", "length": 155 }, "evidence": [ { "id": "A0A9J7JSR4", "url": 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record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027272457", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272457" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JRI9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRI9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Gpr132", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRI9", "locus": {} } ], "crossref": [ { "id": "A0A9J7JRI9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JRI9", "database": "AlphaFoldDB", "categories": [] }, { "id": "100753002", "url": "https://www.ncbi.nlm.nih.gov/gene/100753002", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005388", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005388", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100753002", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753002", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SLCELMY", "url": "https://omabrowser.org/oma/group/SLCELMY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2M5A5", "url": "https://www.orthodb.org/?gene=A0A8C2M5A5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JQE2", "url": "https://www.orthodb.org/?gene=A0A9J7JQE2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JRI9", "url": "https://www.orthodb.org/?gene=A0A9J7JRI9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24234", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24234", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24234:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24234:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00001", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00001", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027272457", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272457", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M5A5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5A5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M5A5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5A5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JQE2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQE2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JQE2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQE2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JRI9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRI9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JRI9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRI9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDQQSLQGVLVLVLANKQDLVEKRPSAHKLAVLLSCQSHPHKGHKAHIGSTMRSESIGAAGNSTPGVPSILLTVSVPSSKVCRPSYEESRVVLVVVYSAVCMLGLPANCLTAWLTLLQVLQRNVLAVYLFFLSVCELLYIGTLPLWIIYIENEHRWSLGPQACKVTAYVFFCNIYISILLLCCISCDRYMAVVYALESRGHRHQKTAIIVSVIVFVLVGLVNYPVFDIKMERNSCFEPLDMNSKIASYHYLRFAFGFAIPLGTLAFTNHRIFRSIKLSSSLSTSQKAKVKHSAVAVVTIFLVCFAPYHLVLLIKAVSFSIIGGDEDAVCAFESRLYTVSVVFLCLSTVNSVADPIIYVLATDHSRQEVSRIHTGWKKWSTKTYLTDFKNSEETHLPTALTNSYTFPKPVHPPGSQLAELDQLDLRCSPERLPEEFC", "length": 436, "header": "tr|A0A9J7JRI9-1|A0A9J7JRI9_CRIGR Isoform 1 of Probable G-protein coupled receptor 132 isoform X1 OS=Cricetulus griseus OX=10029 GN=Gpr132 PE=3 SV=1 CANONICAL=A0A9J7JRI9-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M5A5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5A5/entry", "sequence": { "sequence": "MRSESIGAAGNSTPGVPSILLTVSVPSSKVCRPSYEESRVVLVVVYSAVCMLGLPANCLTAWLTLLQVLQRNVLAVYLFFLSVCELLYIGTLPLWIIYIENEHRWSLGPQACKVTAYVFFCNIYISILLLCCISCDRYMAVVYALESRGHRHQKTAIIVSVIVFVLVGLVNYPVFDIKMERNSCFEPLDMNSKIASYHYLRFAFGFAIPLGTLAFTNHRIFRSIKLSSSLSTSQKAKVKHSAVAVVTIFLVCFAPYHLVLLIKAVSFSIIGGDEDAVCAFESRLYTVSVVFLCLSTVNSVADPIIYVLATDHSRQEVSRIHTGWKKWSTKTYLTDFKNSEETHLPTALTNSYTFPKPVHPPGSQLAELDQLDLRCSPERLPEEFC", "length": 385, "header": "tr|A0A8C2M5A5-1|A0A9J7JRI9_CRIGR Computationally mapped isoform of Probable G-protein coupled receptor 132 isoform X1 OS=Cricetulus griseus OX=10029 GN=Gpr132 PE=3 SV=1 CANONICAL=A0A9J7JRI9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JQE2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQE2/entry", "sequence": { "sequence": "MVAAIQTQSLEVLLSCQSHPHKGHKAHIGSTMRSESIGAAGNSTPGVPSILLTVSVPSSKVCRPSYEESRVVLVVVYSAVCMLGLPANCLTAWLTLLQVLQRNVLAVYLFFLSVCELLYIGTLPLWIIYIENEHRWSLGPQACKVTAYVFFCNIYISILLLCCISCDRYMAVVYALESRGHRHQKTAIIVSVIVFVLVGLVNYPVFDIKMERNSCFEPLDMNSKIASYHYLRFAFGFAIPLGTLAFTNHRIFRSIKLSSSLSTSQKAKVKHSAVAVVTIFLVCFAPYHLVLLIKAVSFSIIGGDEDAVCAFESRLYTVSVVFLCLSTVNSVADPIIYVLATDHSRQEVSRIHTGWKKWSTKTYLTDFKNSEETHLPTALTNSYTFPKPVHPPGSQLAELDQLDLRCSPERLPEEFC", "length": 416, "header": "tr|A0A9J7JQE2-1|A0A9J7JQE2_CRIGR Computationally mapped isoform of Probable G-protein coupled receptor 132 isoform X2 OS=Cricetulus griseus OX=10029 GN=Gpr132 PE=3 SV=1 CANONICAL=A0A9J7JRI9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JRI9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRI9/entry", "sequence": { "sequence": "MDQQSLQGVLVLVLANKQDLVEKRPSAHKLAVLLSCQSHPHKGHKAHIGSTMRSESIGAAGNSTPGVPSILLTVSVPSSKVCRPSYEESRVVLVVVYSAVCMLGLPANCLTAWLTLLQVLQRNVLAVYLFFLSVCELLYIGTLPLWIIYIENEHRWSLGPQACKVTAYVFFCNIYISILLLCCISCDRYMAVVYALESRGHRHQKTAIIVSVIVFVLVGLVNYPVFDIKMERNSCFEPLDMNSKIASYHYLRFAFGFAIPLGTLAFTNHRIFRSIKLSSSLSTSQKAKVKHSAVAVVTIFLVCFAPYHLVLLIKAVSFSIIGGDEDAVCAFESRLYTVSVVFLCLSTVNSVADPIIYVLATDHSRQEVSRIHTGWKKWSTKTYLTDFKNSEETHLPTALTNSYTFPKPVHPPGSQLAELDQLDLRCSPERLPEEFC", "length": 436, "header": "tr|A0A9J7JRI9-1|A0A9J7JRI9_CRIGR Isoform 1 of Probable G-protein coupled receptor 132 isoform X1 OS=Cricetulus griseus OX=10029 GN=Gpr132 PE=3 SV=1 CANONICAL=A0A9J7JRI9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M5A5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5A5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M5A5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5A5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100753002", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753002", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0R4IEK2-1", "protein_name": "Probable G-protein coupled receptor 132b", "gene_name": "gpr132b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MVSGRVLTTFRDMMHATTVAQSIMTSMNQSSRASCEISHEADRIPLMVLYIVVFIIGLPANLATVYLTLHQVCRKNVLGIYLLSLSICDLTYLFTLPMWTVYVSRNHEWPWSSLACKITGFVFFNNMYISIFLLCCVSIDRYVAVVYAIESRGLRQKRIAAFVSFLIFIVVGLGHSPVFIMREGQVEEGSHRCFEPSQSTTLVTGFNYARVCIGFCIPLAILIFTNRAILANVQASTGLQPHQKVKVRYLAVAVVALFLICFAPYHIILLMRAVIFHFPNLQGKCHFEQHIYTPYKISLGLSTFNSAINPILYVLSSNNIRQEIRRGITSVCDRVLSSQRSTHSSQHNMHSSRSNSEPFPIKGGQMRTVCPTA", "length": 373 }, "evidence": [ { "id": "A0A9J7JRI9", "url": "https://omabrowser.org/oma/group/A0A9J7JRI9/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A287B0M2-1", "protein_name": "G protein-coupled receptor 132", "gene_name": "GPR132", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRPLTWELPYGTGAAPPKKDRPKGTPRGSATLGVSSLGPREPSCLPWRGRLWVARRGAGPHACLCPAGNATPAGGPGLAALNCSMPFEESRLFLVAVYSAVCVLGLPANCLTAWLTLLQVLQGNVLAVYLFCLALCELLYVGTLPLWVVYVQNQHRWTLGPWACRVTAYIFFCNLYVSILFLCCISCDRFVAVVYALESRGRRHQRTAILVSAAVFALVGLVHYPVFQMGEGDTCFETLPMDRKAAGFYYARFTVGFALPLGIIAFTNQRIFRSSQLSASLSAAQKAKVKHLAIAVVAIFLVCFAPYHLVLLVKAVAFSYHQGDPGSMCAFEASLYTASMVLLCLSTVNSIADPFIYVLAAEVSRQEVSRLHKEWKKWSTKTDDIKLTSSKDSEEAASPVSLRNGCVGPGPVWPSGPPPGTLERLTEESC", "length": 430 }, "evidence": [ { "id": "A0A9J7JRI9", "url": "https://omabrowser.org/oma/group/A0A9J7JRI9/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q9UNW8-1", "protein_name": "Probable G protein-coupled receptor 132", "gene_name": "GPR132", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MCPMLLKNGYNGNATPVTTTAPWASLGLSAKTCNNVSFEESRIVLVVVYSAVCTLGVPANCLTAWLALLQVLQGNVLAVYLLCLALCELLYTGTLPLWVIYIRNQHRWTLGLLACKVTAYIFFCNIYVSILFLCCISCDRFVAVVYALESRGRRRRRTAILISACIFILVGIVHYPVFQTEDKETCFDMLQMDSRIAGYYYARFTVGFAIPLSIIAFTNHRIFRSIKQSMGLSAAQKAKVKHSAIAVVVIFLVCFAPYHLVLLVKAAAFSYYRGDRNAMCGLEERLYTASVVFLCLSTVNGVADPIIYVLATDHSRQEVSRIHKGWKEWSMKTDVTRLTHSRDTEELQSPVALADHYTFSRPVHPPGSPCPAKRLIEESC", "length": 380 }, "evidence": [ { "id": "A0A9J7JRI9", "url": "https://omabrowser.org/oma/group/A0A9J7JRI9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9Z282-1", "protein_name": "Probable G protein-coupled receptor 132", "gene_name": "Gpr132", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRSEPTNAAGNTTLGVTSVLQSTSVPSSETCHVSYEESRVVLVVVYSAVCLLGLPANCLTAWLTLLQVLQRNVLAVYLFCLSLCELLYISTVPLWIIYIQNQHKWNLGPQACKVTAYIFFCNIYISILLLCCISCDRYMAVVYALESRGHRHQRTAVTISACVILLVGLVNYPVFDMKVEKSFCFEPLRMNSKIAGYHYLRFTFGFAIPLGILAFTNHQIFRSIKLSDSLSAAQKNKVKRSAIAVVTIFLVCFAPYHVVLLVKAASFSFYQGDMDAVCAFESRLYTVSMVFLCLSTVNSVADPIIYVLGTDHSRQEVSRIHTGWKKWSTKTYVTCSKDSEETHLPTELSNTYTFPNPAHPPGSQPAKLGLLCSPERLPEELC", "length": 382 }, "evidence": [ { "id": "A0A9J7JRI9", "url": "https://omabrowser.org/oma/group/A0A9J7JRI9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "R4GHJ0-1", "protein_name": "G protein-coupled receptor 132", "gene_name": "GPR132", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MFPHLIRNENTSWEKKIIMGDHNVCATIGKDNNSTICSNIPYEDTKILVIVVYSIVFAIGLPANCLTSMLALVQIRRNNAIAIYIFSLSLCDLMYLSTLPLWIIYAQQNHQWTMGEQVCKLTGFVFFCNIYISILLLCCISLDRYVALVYALESRGRRGRKKAIIIVCFLVAAVAVIHSPVFHMNSIHNSNCFETLPLDKTLASFSFARFLFGFVIPFTVLIFTNYKIFQRTKTSDSVTSHQKAKVKYLAIAIIVIFLMCFAPYHVVLLIRAIYFMFHQDCSCPFERSIYSVFTAFLCLSTANGIADPIIYVLTSENVRKDFYRGLRRWKSNSSRLNSSINHKTDSSKLKMQKESQEGVLEEENKEISSSSQV", "length": 373 }, "evidence": [ { "id": "A0A9J7JRI9", "url": "https://omabrowser.org/oma/group/A0A9J7JRI9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JRI9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRI9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JRI9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRI9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "G1/S transition of mitotic cell cycle", "id": "GO:0000082", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000082", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JRI9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRI9" } ], "pmid": "" }, { "name": "negative regulation of G2/M transition of mitotic cell cycle", "id": "GO:0010972", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010972", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JRI9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRI9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 62, "end_pos": 64, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JRI9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRI9" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 107, "end_pos": 357, "start_aa": "Ala", "end_aa": "Tyr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 62, "end_pos": 64 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JSD1-1", "uniprot_ac": "A0A9J7JSD1", "uniprot_id": "A0A9J7JSD1_CRIGR", "mass": { "chemical_mass": 313730.0, "monoisotopic_mass": 313730.0 }, "refseq": { "ac": "XP_027273002", "name": "protein PRRC2C isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273002" }, "gene_names": [ { "name": "Prrc2c", "type": "recommended", "evidence": [ { "id": "A0A9J7JSD1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSD1" } ] }, { "name": "Prrc2c", "type": "synonym", "evidence": [ { "id": "XP_027273002", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273002" } ] } ], "protein_names": [ { "name": "Protein PRRC2C isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7JSD1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSD1/entry#names_and_taxonomy" } ] }, { "name": "protein PRRC2C isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027273002", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273002" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027273002", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273002" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JSD1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSD1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Prrc2c", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSD1", "locus": {} } ], "crossref": [ { "id": "100750698", "url": "https://www.ncbi.nlm.nih.gov/gene/100750698", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR009738", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009738", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033184", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033184", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100750698", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750698", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JSD1", "url": "https://www.orthodb.org/?gene=A0A9J7JSD1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14038", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14038", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14038:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14038:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07001", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07001", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027273002", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273002", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MGH0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MGH0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MGH0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MGH0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MIH5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MIH5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MIH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MIH5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G0H1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0H1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G0H1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0H1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G0M8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0M8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G0M8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0M8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G0Q3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0Q3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G0Q3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0Q3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G2K2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2K2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G2K2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2K2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G503", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G503", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G503-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G503-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JJ03", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJ03", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JJ03-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJ03-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JNZ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNZ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JNZ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNZ0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JQR5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQR5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JQR5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQR5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JSD1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSD1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JSD1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSD1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSEKSGQSTKAKDGKKYATLSLFNTYKGKSLETQKTTVAARHGLQSLGKVGISRRMPPPANLPSLKAENKGNDPNVNIVPKDGTGWASKQEQHEEEKAPEVSPAQPKPGVAAPPEVAPAPKSWASNKQGGQGDGIQVNSQFQQEFPSLQAAGDQEKKEKETNDENYGPGPSLRPPNVACWRDGGKSAGSPSSDQDEKQLGQDESMSITSEQNDILKVVEKRIACGPPQAKLNGQQPTLASPYRAMMPPYMFQQYPRMAYPPLHGPMRFPPSLSETNKGLRGRGPPPSWASEPERPSILSASELKELDKFDNLDAEADEGWAGAQMEVDYTEQLNFSDDDEQGSSSPKENSSEDQSSKTPESTENRKEVDEASGTKSSSQIPAQPPVAKSPYGKGPPFNQERGPSSHLPPPPKLLAQQHPPPPDRQVPGRQGPFPSKPQVPDNDEIWKQRRKQQSEISAAVERARKRREEEERRMEEQRKAACAEKLKQLDEKFGIIEKQPSPEELREREREKEREREKELEKEREQERERERERELEKEREKQKEMEKERQQQKELEQQREKEQELQRVREEEKEVELKEKEKEEKVEPQEPILEPMAEKQESESNCNKEEEPIFTRQDSSRSEKETTQMVQEAEPESGSQPRPAVLSGYFKQFQKSLPPRFQRQQEQMKQQQWQQQQQQQGVLPQTVPSQPSNGSVPPPPHRPLYQPMQPHPQHLASMGFDPRWLMMQSYMDPRMISGRPAMDIPPIHPGMIPPKPLIRRDQMEGSPNSSESFEHIARSARDHGISLSEPRMMWGSDPYHAEPQQAATPKSAEEPRDARTEPALDHEQITAAYPVEHSHLETHSKTDVARDSAETEGHKYLSKSVEDVRPLRADTNNQSACFEVIDQKSLPTPPEERISALESQPARKRSVSHGSNHTQKADEQRSEPSVSITKVTSRCIDSKETVEKPEEKPRKDSFLRSSEGPKPEKIYKSKSETRWGPRPSSNRREEGNDRPVRRSGPIKKPVLRDMKEEREQRKEKEGEKAEKVTERVVKTEKTEKKDLPPPLPPPAPVQPQPLVPPPVQPEPEKLPSTETSASAQKPSQDNEKPLEPVPSVQVEPAVKTGNQQSIAAPTVKEEKQPEKVISKDVGVERLRPDSRPPVKKESPLPPRTYWKDARDRDWFPDQGYRGRGRGEYYSRGRSYRGSYGGRGRGGRGHTRDYPQYRDSKPRTEHGPSGPLRQREESETRSESSDFEVVPKRRRQRGSETDTDSEVHESASDKDSLSKGKFPKREERAENKKPMKPQSFKPENHVRIDNRPLEKPYIRDEDKSKPGFLPKGEPTRRGRGGTFRRGGRDPGSRPSRPATLRRPAYRDNQWNPRQAEPPKPEDGEPPRRHEQFMPIPADRRPPKFERKFDPARERPRRQRPTRPPRQDKPPRFRRLREREAASKTGEVLVTTNGTVNNVVQEPVNPPGDVSGNKTPDLSNQNSSDQANEEWETASESSDFNERRERDEKKNADVSSQTVVKAGENVLPPKREIAKRSFSSQRPGVDRQNRRGNNGPPKSGRNFSGPRNERRNGPPSKSGKRGPFDDQSSGTAGVDPVNGNSAHHQEGAPNGAGQKNPKDATGKKREDTKPGPKKTKEKVDALSQFDLNNYASVVIIDDHPEVTVIEDPQSNLNDDGFTEVVSKKQQKRLQDEERRKKEEQVVQVWNKKNVNEKGRSQASKLPPRFAKKQATGTQQAQAPASAPAPVSSSAAVLPPPAASVPATAPAPAPVPVLASATALVPASAPAQVLTSSPAPVPASASTPVPVSTSSALTASSSPQVSVPAPTPILASASATASVPILTSASIPILASALAPASVSSPTPVVSAPAGPTISTPTAPTPAPVPAPAASVPLAPASTTTTAPAPAPAPAPPAQTQTQTHKPVQSPLPPPTSSSKQPPPSIRLPSAQTSNGTDYVATGKSIQAPQSHGSLTAELWDNKVAAPAVLNDISKKLGPISPPQPPSVSAWNKPLTSFGSATSSEGTRNGQEAGVEIGIDTIQFGAPASNGNENEVVPVLSEKPTDKVPEPKEQRQKQPRAGPIKAQKLPDLSLVENKEHKPGPIGKERSLKNRKVKDAQQAEPEGQEKPSPAVVRSTDPGTSKETKAVSEMSAEIGAMISVSSAEYGTDAKESVTDYTTPSSSLPNTVATNNAKMEDTLVNNVPLPNTLPLPKRETIQQSSSLTSVPPTTFSLTFKMESARKAWENSPNIREKGSPVTSTAPPIVSGVSSSASGSSTANYNSFSSASMPQIPVASVTPTASLSGAGTYTTSSLSTKSTTTSDPPNICKVKPQQLQTSSLPSASHFSQLSCMPSLIAQQQQSPQVYVSQSAAAQIPAFYMDTSHLFNTQHARLAPPSLAQQQGFQPGLSQPTSVQQIPIPIYAPLQGQHQAQLSLGAGPAVSQAQELFSSSIQPYRSQPAFMQSSLSQPSVVLSGTAIHNFPAVQHQELAKAQSGLAFQQTSNTQPIPILYEHQLGQASGLGSSQLIDTHLLQARANLTQASNLYSGQVQQPGQTNFYNTAQSPSALQQVNYGMVTVPLPASQLSLTNFGSTGQPLIALPQTLQPQLQHTTPQAQAQSLSRPAQVSQPFRGLIPAGTQHSMMATTGKMSEMELKAFGGGIDIKPGTPPIGGRSTTPTSSPFRATSTSPNSQSSKMNSIVYQKQFQSAPATVRMTQPFPAQFAPQILSQPNLVPPLVRAPHTNTFPAPVQRPPMALASQMPPPLTTGLMSHARLPHVARGPCGSLSGVRGNQAQAALKAEQDMKAKQRAEVLQSTQRFFSEQQQSKQIGGKGQKVDSDSSKSPETLTDPPGACQEKVEEKPPPAPTITTKPVRTGPIKPQAIKTEETKS", "length": 2870, "header": "tr|A0A9J7JSD1-1|A0A9J7JSD1_CRIGR Isoform 1 of Protein PRRC2C isoform X2 OS=Cricetulus griseus OX=10029 GN=Prrc2c PE=4 SV=1 CANONICAL=A0A9J7JSD1-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MGH0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MGH0/entry", "sequence": { "sequence": "MSEKSGQSTKAKDGKKYATLSLFNTYKGKSLETQKTTARHGLQSLGKVGISRRMPPPANLPSLKAENKGNDPNVNIVPKDGTGWASKQEQHEEEKAPEVSPAQPKPGVAAPPEVAPAPKSWASNKQGGQGDGIQVNSQFQQEFPSLQAAGDQEKKEKETNDENYGPGPSLRPPNVACWRDGGKSAGSPSSDQDEKQLGQDESMSITSEQNDILKVVEKRIACGPPQAKLNGQQPTLASPYRAMMPPYMFQQYPRMAYPPLHGPMRFPPSLSETNKGLRGRGPPPSWASEPERPSILSASELKELDKFDNLDAEADEGWAGAQMEVDYTEQLNFSDDDEQGSSSPKENSSEDQSSKTPESTENRKEVDEASGTKSSSQIPAQPPVAKSPYGKGPPFNQERGPSSHLPPPPKLLAQQHPPPPDRQVPGRQGPFPSKPQVPDNDEIWKQRRKQQSEISAAVERARKRREEEERRMEEQRKAACAEKLKQLDEKFGIIEKQPSPEELREREREKEREREKELEKEREQERERERERELEKEREKQKEMEKERQQQKELEQQREKEQELQRVREEEKEVELKEKEKEEKVEPQEPILEPMAEKQESESNCNKEEEPIFTRQDSSRSEKETTQMVQEAEPESGSQPRPAVLSGYFKQFQKSLPPRFQRQQEQMKQQQWQQQQQQQGVLPQTVPSQPSNGSVPPPPHRPLYQPMQPHPQHLASMGFDPRWLMMQSYMDPRMISGRPAMDIPPIHPGMIPPKPLIRRDQMEGSPNSSESFEHIARSARDHGISLSEPRMMWGSDPYHAEPQQAATPKSAEEPRDARTEPALDHEQITAAYPVEHSHLETHSKTDVARDSAETEGHKYLSKSVEDVRPLRADTNNQSACFEVIDQKSLPTPPEERISALESQPARKRSVSHGSNHTQKADEQRSEPSVSITKVTSRCIDSKETVEKPEEKPRKDSFLRSSEGPKPEKIYKSKSETRWGPRPSSNRREEGNDRPVRRSGPIKKPVLRDMKEEREQRKEKEGEKAEKVTERVVKTEKTEKKDLPPPLPPPAPVQPQPLVPPPVQPEPEKLPSTETSASAQKPSQDNEKPLEPVPSVQVEPAVKTGNQQSIAAPTVKEEKQPEKVISKDVGVERLRPDSRPPVKKESPLPPRTYWKDARDRDWFPDQGYRGRGRGEYYSRGRSYRGSYGGRGRGGRGHTRDYPQYRDSKPRTEHGPSGPLRQREESETRSESSDFEVVPKRRRQRGSETDTDSEVHESASDKDSLSKGKFPKREERAENKKPMKPQSFKPENHVRIDNRPLEKPYIRDEDKSKPGFLPKGEPTRRGRGGTFRRGGRDPGSRPSRPATLRRPAYRDNQWNPRQAEPPKPEDGEPPRRHEQFMPIPADRRPPKFERKFDPARERPRRQRPTRPPRQDKPPRFRRLREREAASKTGEVLVTTNGTVNNVVQEPVNPPGDVSGNKTPDLSNQNSSDQANEEWETASESSDFNERRERDEKKNADVSSQTVVKAGENVLPPKREIAKRSFSSQRPGVDRQNRRGNNGPPKSGRNFSGPRNERRNGPPSKSGKRGPFDDQSSGTAGVDPVNGNSAHHQEGAPNGAGQKNPKDATGKKREDTKPGPKKTKEKVDALSQFDLNNYASVVIIDDHPEVTVIEDPQSNLNDDGFTEVVSKKQQKRLQDEERRKKEEQVVQVWNKKNVNEKGRSQASKLPPRFAKKQATGTQQAQAPASAPAPVSSSAAVLPPPAASVPATAPAPAPVPVLASATALVPASAPAQVLTSSPAPVPASASTPVPVSTSSALTASSSPQVSVPAPTPILASASATASVPILTSASIPILASALAPASVSSPTPVVSAPAGPTISTPTAPTPAPVPAPAASVPLAPASTTTTAPAPAPAPAPPAQTQTQTHKPVQSPLPPPTSSSKQPPPSIRLPSAQTSNGTDYVATGKSIQAPQSHGSLTAELWDNKVAAPAVLNDISKKLGPISPPQPPSVSAWNKPLTSFGSATSSEGTRNGQEAGVEIGIDTIQFGAPASNGNENEVVPVLSEKPTDKVPEPKEQRQKQPRAGPIKAQKLPDLSLVENKEHKPGPIGKERSLKNRKVKDAQQAEPEGQEKPSPAVVRSTDPGTSKETKAVSEMSAEIGAMISVSSAEYGTDAKESVTDYTTPSSSLPNTVATNNAKMEDTLVNNVPLPNTLPLPKRETIQQSSSLTSVPPTTFSLTFKMESARKAWENSPNIREKGSPVTSTAPPIVSGVSSSASGSSTANYNSFSSASMPQIPVASVTPTASLSGAGTYTTSSLSTKSTTTSDPPNICKVKPQQLQTSSLPSASHFSQLSCMPSLIAQQQQSPQVYVSQSAAAQIPAFYMDTSHLFNTQHARLAPPSLAQQQGFQPGLSQPTSVQQIPIPIYAPLQGQHQAQLSLGAGPAVSQAQELFSSSIQPYRSQPAFMQSSLSQPSVVLSGTAIHNFPAVQHQELAKAQSGLAFQQTSNTQPIPILYEHQLGQASGLGSSQLIDTHLLQARANLTQASNLYSGQVQQPGQTNFYNTAQSPSALQQVTVPLPASQLSLTNFGSTGQPLIALPQTLQPQLQHTTPQAQAQSLSRPAQVSQPFRGLIPAGTQHSMMATTGKMSEMELKAFGGGIDIKPGTPPIGGRSTTPTSSPFRATSTSPNSQSSKMNSIVYQKQFQSAPATVRMTQPFPAQFAPQAKQRAEVLQSTQRFFSEQQQSKQIGGKGQKVDSDSSKSPETLTDPPGACQEKVEEKPPPAPTITTKPVRTGPIKPQAIKTEETKS", "length": 2784, "header": "tr|A0A8C2MGH0-1|A0A9J7JSD1_CRIGR Computationally mapped isoform of Protein PRRC2C isoform X2 OS=Cricetulus griseus OX=10029 GN=Prrc2c PE=4 SV=1 CANONICAL=A0A9J7JSD1-1" }, "locus": {} }, { "isoform_ac": "A0A8C2MIH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MIH5/entry", "sequence": { "sequence": "MSEKSGQSTKAKDGKKYATLSLFNTYKGKSLETQKTTVAARHGLQSLGKVGISRRMPPPANLPSLKAENKGNDPNVNIVPKDGTGWASKQEQHEEEKAPEVSPAQPKPGVAAPPEVAPAPKSWASNKQGGQGDGIQVNSQFQQEFPSLQAAGDQEKKEKETNDENYGPGPSLRPPNVACWRDGGKSAGSPSSDQDEKQLGQDESMSITSEQNDILKVVEKRIACGPPQAKLNGQQPTLASPYRAMMPPYMFQQYPRMAYPPLHGPMRFPPSLSETNKGLRGRGPPPSWASEPERPSILSASELKELDKFDNLDAEADEGWAGAQMEVDYTEQLNFSDDDEQGSSSPKENSSEDQSSKTPESTENRKEVDEASGTKSSSQIPAQPPVAKSPYGKGPPFNQERGPSSHLPPPPKLLAQQHPPPPDRQVPGRQGPFPSKPQVPDNDEIWKQRRKQQSEISAAVERARKRREEEERRMEEQRKAACAEKLKQLDEKFGIIEKQPSPEELREREREKEREREKELEKEREQERERERERELEKEREKQKEMEKERQQQKELEQQREKEQELQRVREEEKEVELKEKEKEEKVEPQEPILEPMAEKQESESNCNKEEEPIFTRQDSSRSEKETTQMVQEAEPESGSQPRPAVLSGYFKQFQKSLPPRFQRQQEQMKQQQWQQQQQQQGVLPQTVPSQPSNGSVPPPPHRPLYQPMQPHPQHLASMGFDPRWLMMQSYMDPRMISGRPAMDIPPIHPGMIPPKPLIRRDQMEGSPNSSESFEHIARSARDHGISLSEPRMMWGSDPYHAEPQQAATPKSAEEPRDARTEPALDHEQITAAYPVEHSHLETHSKTDVARDSAETEGHKYLSKSVEDVRPLRADTNNQSACFEVIDQKSLPTPPEERISALESQPARKRSVSHGSNHTQKADEQRSEPSVSITKVTSRCIDSKETVEKPEEKPRKDSFLRSSEGPKPEKIYKSKSETRWGPRPSSNRREEGNDRPVRRSGPIKKPVLRDMKEEREQRKEKEGEKAEKVTERVVKTEKTEKKDLPPPLPPPAPVQPQPLVPPPVQPEPEKLPSTETSASAQKPSQDNEKPLEPVPSVQVEPAVKTGNQQSIAAPTVKEEKQPEKVISKDVGVERLRPDSRPPVKKESPLPPRTYWKDARDRDWFPDQGYRGRGRGEYYSRGRSYRGSYGGRGRGGRGHTRDYPQYRDSKPRTEHGPSGPLRQREESETRSESSDFEVVPKRRRQRGSETDTDSEVHESASDKDSLSKGKFPKREERAENKKPMKPQSFKPENHVRIDNRPLEKPYIRDEDKSKPGFLPKGEPTRRGRGGTFRRGGRDPGSRPSRPATLRRPAYRDNQWNPRQAEPPKPEDGEPPRRHEQFMPIPADRRPPKFERKFDPARERPRRQRPTRPPRQDKPPRFRRLREREAASKTGEVLVTTNGTVNNVVQEPVNPPGDVSGNKTPDLSNQNSSDQANEEWETASESSDFNERRERDEKKNADVSSQTVVKAGENVLPPKREIAKRSFSSQRPGVDRQNRRGNNGPPKSGRNFSGPRNERRNGPPSKSGKRGPFDDQSSGTAGVDPVNGNSAHHQEGAPNGAGQKNPKDATGKKREDTKPGPKKTKEKVDALSQFDLNNYASVVIIDDHPEVTVIEDPQSNLNDDGFTEVVSKKQQKRLQDEERRKKEEQVVQVWNKKNVNEKGRSQASKLPPRFAKKQATGTQQAQAPASAPAPVSSSAAVLPPPAASVPATAPAPAPVPVLASATALVPASAPAQVLTSSPAPVPASASTPVPVSTSSALTASSSPQVSVPAPTPILASASATASVPILTSASIPILASALAPASVSSPTPVVSAPAGPTISTPTAPTPAPVPAPAASVPLAPASTTTTAPAPAPAPAPPAQTQTQTHKPVQSPLPPPTSSSKQPPPSIRLPSAQTSNGTDYVATGKSIQAPQSHGSLTAELWDNKVAAPAVLNDISKKLGPISPPQPPSVSAWNKPLTSFGSATSSEGTRNGQEAGVEIGIDTIQFGAPASNGNENEVVPVLSEKPTDKVPEPKEQRQKQPRAGPIKAQKLPDLSLVENKEHKPGPIGKERSLKNRKVKDAQQAEPEGQEKPSPAVVRSTDPGTSKETKAVSEMSAEIGAMISVSSAEYGTDAKESVTDYTTPSSSLPNTVATNNAKMEDTLVNNVPLPNTLPLPKRETIQQSSSLTSVPPTTFSLTFKMESARKAWENSPNIREKGSPVTSTAPPIVSGVSSSASGSSTANYNSFSSASMPQIPVASVTPTASLSGAGTYTTSSLSTKSTTTSDPPNICKVKPQQLQTSSLPSASHFSQLSCMPSLIAQQQQSPQVYVSQSAAAQIPAFYMDTSHLFNTQHARLAPPSLAQQQGFQPGLSQPTSVQQIPIPIYAPLQGQHQAQLSLGAGPAVSQAQELFSSSIQPYRSQPAFMQSSLSQPSVVLSGTAIHNFPAVQHQELAKAQSGLAFQQTSNTQPIPILYEHQLGQASGLGSSQLIDTHLLQARANLTQASNLYSGQVQQPGQTNFYNTAQSPSALQQVTVPLPASQLSLTNFGSTGQPLIALPQTLQPQLQHTTPQAQAQSLSRPAQVSQPFRGLIPAGTQHSMMATTGKMSEMELKAFGGGIDIKPGTPPIGGRSTTPTSSPFRATSTSPNSQSSKMNSIVYQKQFQSAPATVRMTQPFPAQFAPQILSQPNLVPPLVRAPHTNTFPAPVQRPPMALASQMPPPLTTGLMSHARLPHVARGPCGSLSGVRGNQAQAALKAEQDMKAKQRAEVLQSTQRFFSEQQQSKQIGGKGQKVDSDSSKSPETLTDPPGACQEKVEEKPPPAPTITTKPVRTGPIKPQAIKTEETKS", "length": 2865, "header": "tr|A0A8C2MIH5-1|A0A9J7JSD1_CRIGR Computationally mapped isoform of Protein PRRC2C isoform X2 OS=Cricetulus griseus OX=10029 GN=Prrc2c PE=4 SV=1 CANONICAL=A0A9J7JSD1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G0H1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0H1/entry", "sequence": { "sequence": "MSEKSGQSTKAKDGKKYATLSLFNTYKGKSLETQKTTVAARHGLQSLGKVGISRRMPPPANLPSLKAENKGNDPNVNIVPKDGTGWASKQEQHEEEKAPEVSPAQPKPGVAAPPEVAPAPKSWASNKQGGQGDGIQVNSQFQQEFPSLQAAGDQEKKEKETNDENYGPGPSLRPPNVACWRDGGKSAGSPSSDQDEKQLGQDESMSITSEQNDILKVVEKRIACGPPQAKLNGQQPTLASPYRAMMPPYMFQQYPRMAYPPLHGPMRFPPSLSETNKGLRGRGPPPSWASEPERPSILSASELKELDKFDNLDAEADEGWAGAQMEVDYTEQLNFSDDDEQGSSSPKENSSEDQSSKTPESTENRKEVDEASGTKSSSQIPAQPPVAKSPYGKGPPFNQERGPSSHLPPPPKLLAQQHPPPPDRQVPGRQGPFPSKPQVPDNDEIWKQRRKQQSEISAAVERARKRREEEERRMEEQRKAACAEKLKQLDEKFGIIEKQPSPEELREREREKEREREKELEKEREQERERERERELEKEREKQKEMEKERQQQKELEQQREKEQELQRVREEEKEVELKEKEKEEKVEPQEPILEPMAEKQESESNCNKEEEPIFTRQDSSRSEKETTQMVQEAEPESGSQPRPAVLSGYFKQFQKSLPPRFQRQQEQMKQQQWQQQQQQQGVLPQTVPSQPSNGSVPPPPHRPLYQPMQPHPQHLASMGFDPRWLMMQSYMDPRMISGRPAMDIPPIHPGMIPPKPLIRRDQMEGSPNSSESFEHIARSARDHGISLSEPRMMWGSDPYHAEPQQAATPKSAEEPRDARTEPALDHEQITAAYPVEHSHLETHSKTDVARDSAETEGHKYLSKSVEDVRPLRADTNNQSACFEVIDQKSLPTPPEERISALESQPARKRSVSHGSNHTQKADEQRSEPSVSITKVTSRCIDSKETVEKPEEKPRKDSFLRSSEGPKPEKIYKSKSETRWGPRPSSNRREEGNDRPVRRSGPIKKPVLRDMKEEREQRKEKEGEKAEKVTERVVKTEKTEKKDLPPPLPPPAPVQPQPLVPPPVQPEPEKLPSTETSASAQKPSQDNEKPLEPVPSVQVEPAVKTGNQQSIAAPTVKEEKQPEKVISKDVGVERLRPDSRPPVKKESPLPPRTYWKDARDRDWFPDQGYRGRGRGEYYSRGRSYRGSYGGRGRGGRGHTRDYPQYRDSKPRTEHGPSGPLRQREESETRSESSDFEVVPKRRRQRGSETDTDSEVHESASDKDSLSKGKFPKREERAENKKPMKPQSFKPENHVRIDNRPLEKPYIRDEDKSKPGFLPKGEPTRRGRGGTFRRGGRDPGSRPSRPATLRRPAYRDNQWNPRQAEPPKPEDGEPPRRHEQFMPIPADRRPPKFERKFDPARERPRRQRPTRPPRQDKPPRFRRLREREAASKTGEVLVTTNGTVNNVVQEPVNPPGDVSGNKTPDLSNQNSSDQANEEWETASESSDFNERRERDEKKNADVSSQTVVKAGENVLPPKREIAKRSFSSQRPGVDRQNRRGNNGPPKSGRNFSGPRNERRNGPPSKSGKRGPFDDQSSGTAGVDPVNGNSAHHQEGAPNGAGQKNPKDATGKKREDTKPGPKKTKEKVDALSQFDLNNYASVVIIDDHPEVTVIEDPQSNLNDDGFTEVVSKKQQKRLQDEERRKKEEQVVQVWNKKNVNEKGRSQASKLPPRFAKKQATGTQQAQAPASAPAPVSSSAAVLPPPAASVPATAPAPAPVPVLASATALVPASAPAQVLTSSPAPVPASASTPVPVSTSSALTASSSPQVSVPAPTPILASASATASVPILTSASIPILASALAPASVSSPTPVVSAPAGPTISTPTAPTPAPVPAPAASVPLAPASTTTTAPAPAPAPAPPAQTQTQTHKPVQSPLPPPTSSSKQPPPSIRLPSAQTSNGTDYVATGKSIQAPQSHGSLTAELWDNKVAAPAVLNDISKKLGPISPPQPPSVSAWNKPLTSFGSATSSEGTRNGQEAGVEIGIDTIQFGAPASNGNENEVVPVLSEKPTDKVPEPKEQRQKQPRAGPIKAQKLPDLSLVENKEHKPGPIGKERSLKNRKVKDAQQAEPEGQEKPSPAVVRSTDPGTSKETKAVSEMSAEIGAMISVSSAEYGTDAKESVTDYTTPSSSLPNTVATNNAKMEDTLVNNMESARKAWENSPNIREKGSPVTSTAPPIVSGVSSSASGSSTANYNSFSSASMPQIPVASVTPTASLSGAGTYTTSSLSTKSTTTSDPPNICKVKPQQLQTSSLPSASHFSQLSCMPSLIAQQQQSPQVYVSQSAAAQIPAFYMDTSHLFNTQHARLAPPSLAQQQGFQPGLSQPTSVQQIPIPIYAPLQGQHQAQLSLGAGPAVSQAQELFSSSIQPYRSQPAFMQSSLSQPSVVLSGTAIHNFPAVQHQELAKAQSGLAFQQTSNTQPIPILYEHQLGQASGLGSSQLIDTHLLQARANLTQASNLYSGQVQQPGQTNFYNTAQSPSALQQVNYGMVTVPLPASQLSLTNFGSTGQPLIALPQTLQPQLQHTTPQAQAQSLSRPAQVSQPFRGLIPAGTQHSMMATTGKMSEMELKAFGGGIDIKPGTPPIGGRSTTPTSSPFRATSTSPNSQSSKMNSIVYQKQFQSAPATVRMTQPFPAQFAPQILSQPNLVPPLVRAPHTNTFPAPVQRPPMALASQMPPPLTTGLMSHARLPHVARGPCGSLSGVRGNQAQAALKAEQDMKAKQRAEVLQSTQRFFSEQQQSKQIGGKGQKVDSDSSKSPETLTDPPGACQEKVEEKPPPAPTITTKPVRTGPIKPQAIKTEETKS", "length": 2836, "header": "tr|A0A9J7G0H1-1|A0A9J7JSD1_CRIGR Computationally mapped isoform of Protein PRRC2C isoform X2 OS=Cricetulus griseus OX=10029 GN=Prrc2c PE=4 SV=1 CANONICAL=A0A9J7JSD1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G0M8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0M8/entry", "sequence": { "sequence": "MSEKSGQSTKAKDGKKYATLSLFNTYKGKSLETQKTTVAARHGLQSLGKVGISRRMPPPANLPSLKAENKGNDPNVNIVPKDGTGWASKQEQHEEEKAPEVSPAQPKPGVAAPPEVAPAPKSWASNKQGIQVNSQFQQEFPSLQAAGDQEKKEKETNDENYGPGPSLRPPNVACWRDGGKSAGSPSSDQDEKQLGQDESMSITSEQNDILKVVEKRIACGPPQAKLNGQQPTLASPYRAMMPPYMFQQYPRMAYPPLHGPMRFPPSLSETNKGLRGRGPPPSWASEPERPSILSASELKELDKFDNLDAEADEGWAGAQMEVDYTEQLNFSDDDEQGSSSPKENSSEDQSSKTPESTENRKEVDEASGTKSSSQIPAQPPVAKSPYGKGPPFNQERGPSSHLPPPPKLLAQQHPPPPDRQVPGRQGPFPSKPQVPDNDEIWKQRRKQQSEISAAVERARKRREEEERRMEEQRKAACAEKLKQLDEKFGIIEKQPSPEELREREREKEREREKELEKEREQERERERERELEKEREKQKEMEKERQQQKELEQQREKEQELQRVREEEKEVELKEKEKEEKVEPQEPILEPMAEKQESESNCNKEEEPIFTRQDSSRSEKETTQMVQEAEPESGSQPRPAVLSGYFKQFQKSLPPRFQRQQEQMKQQQWQQQQQQQGVLPQTVPSQPSNGSVPPPPHRPLYQPMQPHPQHLASMGFDPRWLMMQSYMDPRMISGRPAMDIPPIHPGMIPPKPLIRRDQMEGSPNSSESFEHIARSARDHGISLSEPRMMWGSDPYHAEPQQAATPKSAEEPRDARTEPALDHEQITAAYPVEHSHLETHSKTDVARDSAETEGHKYLSKSVEDVRPLRADTNNQSACFEVIDQKSLPTPPEERISALESQPARKRSVSHGSNHTQKADEQRSEPSVSITKVTSRCIDSKETVEKPEEKPRKDSFLRSSEGPKPEKIYKSKSETRWGPRPSSNRREEGNDRPVRRSGPIKKPVLRDMKEEREQRKEKEGEKAEKVTERVVKTEKTEKKDLPPPLPPPAPVQPQPLVPPPVQPEPEKLPSTETSASAQKPSQDNEKPLEPVPSVQVEPAVKTGNQQSIAAPTVKEEKQPEKVISKDVGVERLRPDSRPPVKKESPLPPRTYWKDARDRDWFPDQGYRGRGRGEYYSRGRSYRGSYGGRGRGGRGHTRDYPQYRDSKPRTEHGPSGPLRQREESETRSESSDFEVVPKRRRQRGSETDTDSEVHESASDKDSLSKGKFPKREERAENKKPMKPQSFKPENHVRIDNRPLEKPYIRDEDKSKPGFLPKGEPTRRGRGGTFRRGGRDPGSRPSRPATLRRPAYRDNQWNPRQAEPPKPEDGEPPRRHEQFMPIPADRRPPKFERKFDPARERPRRQRPTRPPRQDKPPRFRRLREREAASKTGEVLVTTNGTVNNVVQEPVNPPGDVSGNKTPDLSNQNSSDQANEEWETASESSDFNERRERDEKKNADVSSQTVVKAGENVLPPKREIAKRSFSSQRPGVDRQNRRGNNGPPKSGRNFSGPRNERRNGPPSKSGKRGPFDDQSSGTAGVDPVNGNSAHHQEGAPNGAGQKNPKDATGKKREDTKPGPKKTKEKVDALSQFDLNNYASVVIIDDHPEVTVIEDPQSNLNDDGFTEVVSKKQQKRLQDEERRKKEEQVVQVWNKKNVNEKGRSQASKLPPRFAKKQATGTQQAQAPASAPAPVSSSAAVLPPPAASVPATAPAPAPVPVLASATALVPASAPAQVLTSSPAPVPASASTPVPVSTSSALTASSSPQVSVPAPTPILASASATASVPILTSASIPILASALAPASVSSPTPVVSAPAGPTISTPTAPTPAPVPAPAASVPLAPASTTTTAPAPAPAPAPPAQTQTQTHKPVQSPLPPPTSSSKQPPPSIRLPSAQTSNGTDYVATGKSIQAPQSHGSLTAELWDNKVAAPAVLNDISKKLGPISPPQPPSVSAWNKPLTSFGSATSSEGTRNGQEAGVEIGIDTIQFGAPASNGNENEVVPVLSEKPTDKVPEPKEQRQKQPRAGPIKAQKLPDLSLVENKEHKPGPIGKERSLKNRKVKDAQQAEPEGQEKPSPAVVRSTDPGTSKETKAVSEMSAEIGAMISVSSAEYGTDAKESVTDYTTPSSSLPNTVATNNAKMEDTLVNNVPLPNTLPLPKRETIQQSSSLTSVPPTTFSLTFKMESARKAWENSPNIREKGSPVTSTAPPIVSGVSSSASGSSTANYNSFSSASMPQIPVASVTPTASLSGAGTYTTSSLSTKSTTTSDPPNICKVKPQQLQTSSLPSASHFSQLSCMPSLIAQQQQSPQVYVSQSAAAQIPAFYMDTSHLFNTQHARLAPPSLAQQQGFQPGLSQPTSVQQIPIPIYAPLQGQHQAQLSLGAGPAVSQAQELFSSSIQPYRSQPAFMQSSLSQPSVVLSGTAIHNFPAVQHQELAKAQSGLAFQQTSNTQPIPILYEHQLGQASGLGSSQLIDTHLLQARANLTQASNLYSGQVQQPGQTNFYNTAQSPSALQQVNYGMVTVPLPASQLSLTNFGSTGQPLIALPQTLQPQLQHTTPQAQAQSLSRPAQVSQPFRGLIPAGTQHSMMATTGKMSEMELKAFGGGIDIKPGTPPIGGRSTTPTSSPFRATSTSPNSQSSKMNSIVYQKQFQSAPATVRMTQPFPAQFAPQILSQPNLVPPLVRAPHTNTFPAPVQRPPMALASQMPPPLTTGLMSHARLPHVARGPCGSLSGVRGNQAQAALKAEQDMKAKQRAEVLQSTQRFFSEQQQSKQIGGKGQKVDSDSSKSPETLTDPPGACQEKVEEKPPPAPTITTKPVRTGPIKPQAIKTEETKS", "length": 2865, "header": "tr|A0A9J7G0M8-1|A0A9J7JSD1_CRIGR Computationally mapped isoform of Protein PRRC2C isoform X2 OS=Cricetulus griseus OX=10029 GN=Prrc2c PE=4 SV=1 CANONICAL=A0A9J7JSD1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G0Q3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0Q3/entry", "sequence": { "sequence": "MSEKSGQSTKAKDGKKYATLSLFNTYKGKSLETQKTTVAARHGLQSLGKVGISRRMPPPANLPSLKAENKGNDPNVNIVPKDGTGWASKQEQHEEEKAPEVSPAQPKPGVAAPPEVAPAPKSWASNKQGGQGDGIQVNSQFQQEFPSLQAAGDQEKKEKETNDENYGPGPSLRPPNVACWRDGGKSAGSPSSDQDEKQLGQDESMSITSEQNDILKVVEKRIACGPPQAKLNGQQPTLASPYRAMMPPYMFQQYPRMAYPPLHGPMRFPPSLSETNKGLRGRGPPPSWASEPERPSILSASELKELDKFDNLDAEADEGWAGAQMEVDYTEQLNFSDDDEQGSSSPKENSSEDQSSKTPESTENRKEVDEASGTKSSSQIPAQPPVAKSPYGKGPPFNQERGPSSHLPPPPKLLAQQHPPPPDRQVPGRQGPFPSKPQVPDNDEIWKQRRKQQSEISAAVERARKRREEEERRMEEQRKAACAEKLKQLDEKFGIIEKQPSPEELREREREKEREREKELEKEREQERERERERELEKEREKQKEMEKERQQQKELEQQREKEQELQRVREEEKEVELKEKEKEEKVEPQEPILEPMAEKQESESNCNKEEEPIFTRQDSSRSEKETTQMVQEAEPESGSQPRPAVLSGYFKQFQKSLPPRFQRQQEQMKQQQWQQQQQQQGVLPQTVPSQPSNGSVPPPPHRPLYQPMQPHPQHLASMGFDPRWLMMQSYMDPRMISGRPAMDIPPIHPGMIPPKPLIRRDQMEGSPNSSESFEHIARSARDHGISLSEPRMMWGSDPYHAEPQQAATPKSAEEPRDARTEPALDHEQITAAYPVEHSHLETHSKTDVARDSAETEGHKYLSKSVEDVRPLRADTNNQSACFEVIDQKSLPTPPEERISALESQPARKRSVSHGSNHTQKADEQRSEPSVSITKVTSRCIDSKETVEKPEEKPRKDSFLRSSEGPKPEKIYKSKSETRWGPRPSSNRREEGNDRPVRRSGPIKKPVLRDMKEEREQRKEKEGEKAEKVTERVVKTEKTEKKDLPPPLPPPAPVQPQPLVPPPVQPEPEKLPSTETSASAQKPSQDNEKPLEPVPSVQVEPAVKTGNQQSIAAPTVKEEKQPEKVISKDVGVERLRPDSRPPVKKESPLPPRTYWKDARDRDWFPDQGYRGRGRGEYYSRGRSYRGSYGGRGRGGRGHTRDYPQYRDSKPRTEHGPSGPLRQREESETRSESSDFEVVPKRRRQRGSETDTDSEVHESASDKDSLSKGKFPKREERAENKKPMKPQSFKPENHVRIDNRPLEKPYIRDEDKSKPGFLPKGEPTRRGRGGTFRRGGRDPGSRPSRPATLRRPAYRDNQWNPRQAEPPKPEDGEPPRRHEQFMPIPADRRPPKFERKFDPARERPRRQRPTRPPRQDKPPRFRRLREREAASKTGEVLVTTNGTVNNVVQEPVNPPGDVSGNKTPDLSNQNSSDQANEEWETASESSDFNERRERDEKKNADVSSQTVVKAGENVLPPKREIAKRSFSSQRPGVDRQNRRGNNGPPKSGRNFSGPRNERRNGPPSKSGKRGPFDDQSSGTAGVDPVNGNSAHHQEGAPNGAGQKNPKDATGKKREDTKPGPKKTKEKVDALSQFDLNNYASVVIIDDHPEVTVIEDPQSNLNDDGFTEVVSKKQQKRLQDEERRKKEEQVVQVWNKKNVNEKGRSQASKLPPRFAKKQATGTQQAQAPASAPAPVSSSAAVLPPPAASVPATAPAPAPVPVLASATALVPASAPAQVLTSSPAPVPASASTPVPVSTSSALTASSSPQVSVPAPTPILASASATASVPILTSASIPILASALAPASVSSPTPVVSAPAGPTISTPTAPTPAPVPAPAASVPLAPASTTTTAPAPAPAPAPPAQTQTQTHKPVQSPLPPPTSSSKQPPPSIRLPSAQTSNGTDYVATGKSIQAPQSHGSLTAELWDNKVAAPAVLNDISKKLGPISPPQPPSVSAWNKPLTSFGSATSSEGTRNGQEAGVEIGIDTIQFGAPASNGNENEVVPVLSEKPTDKVPEPKEQRQKQPRAGPIKAQKLPDLSLVENKEHKPGPIGKERSLKNRKVKDAQQAEPEGQEKPSPAVVRSTDPGTSKETKAVSEMSAEIGAMISVSSAEYGTDAKESVTDYTTPSSSLPNTVATNNAKMEDTLVNNVPLPNTLPLPKRETIQQSSSLTSVPPTTFSLTFKMESARKAWENSPNIREKGSPVTSTAPPIVSGVSSSASGSSTANYNSFSSASMPQIPVASVTPTASLSGAGTYTTSSLSTKSTTTSDPPNICKVKPQQLQTSSLPSASHFSQLSCMPSLIAQQQQSPQVYVSQSAAAQIPAFYMDTSHLFNTQHARLAPPSLAQQQGFQPGLSQPTSVQQIPIPIYAPLQGQHQAQLSLGAGPAVSQAQELFSSSIQPYRSQPAFMQSSLSQPSVVLSGTAIHNFPAVQHQELAKAQSGLAFQQTSNTQPIPILYEHQLGQASGLGSSQLIDTHLLQARANLTQASNLYSGQVQQPGQTNFYNTAQSPSALQQVNYGMVTVPLPASQLSLTNFGSTGQPLIALPQTLQPQLQHTTPQAQAQSLSRPAQVSQPFRGLIPAGTQHSMMATTGKMSEMELKAFGGGIDIKPGTPPIGGRSTTPTSSPFRATSTSPNSQSSKMNSIVYQKQFQSAPATVRMTQPFPAQFAPQAKQRAEVLQSTQRFFSEQQQSKQIGGKGQKVDSDSSKSPETLTDPPGACQEKVEEKPPPAPTITTKPVRTGPIKPQAIKTEETKS", "length": 2791, "header": "tr|A0A9J7G0Q3-1|A0A9J7JSD1_CRIGR Computationally mapped isoform of Protein PRRC2C isoform X2 OS=Cricetulus griseus OX=10029 GN=Prrc2c PE=4 SV=1 CANONICAL=A0A9J7JSD1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G2K2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G2K2/entry", "sequence": { "sequence": "MSEKSGQSTKAKDGKKYATLSLFNTYKGKSLETQKTTARHGLQSLGKVGISRRMPPPANLPSLKAENKGNDPNVNIVPKDGTGWASKQEQHEEEKAPEVSPAQPKPGVAAPPEVAPAPKSWASNKQGGQGDGIQVNSQFQQEFPSLQAAGDQEKKEKETNDENYGPGPSLRPPNVACWRDGGKSAGSPSSDQDEKQLGQDESMSITSEQNDILKVVEKRIACGPPQAKLNGQQPTLASPYRAMMPPYMFQQYPRMAYPPLHGPMRFPPSLSETNKGLRGRGPPPSWASEPERPSILSASELKELDKFDNLDAEADEGWAGAQMEVDYTEQLNFSDDDEQGSSSPKENSSEDQSSKTPESTENRKEVDEASGTKSSSQIPAQPPVAKSPYGKGPPFNQERGPSSHLPPPPKLLAQQHPPPPDRQVPGRQGPFPSKPQVPDNDEIWKQRRKQQSEISAAVERARKRREEEERRMEEQRKAACAEKLKQLDEKFGIIEKQPSPEELREREREKEREREKELEKEREQERERERERELEKEREKQKEMEKERQQQKELEQQREKEQELQRVREEEKEVELKEKEKEEKVEPQEPILEPMAEKQESESNCNKEEEPIFTRQDSSRSEKETTQMVQEAEPESGSQPRPAVLSGYFKQFQKSLPPRFQRQQEQMKQQQWQQQQQQQGVLPQTVPSQPSNGSVPPPPHRPLYQPMQPHPQHLASMGFDPRWLMMQSYMDPRMISGRPAMDIPPIHPGMIPPKPLIRRDQMEGSPNSSESFEHIARSARDHGISLSEPRMMWGSDPYHAEPQQAATPKSAEEPRDARTEPALDHEQITAAYPVEHSHLETHSKTDVARDSAETEGHKYLSKSVEDVRPLRADTNNQSACFEVIDQKSLPTPPEERISALESQPARKRSVSHGSNHTQKADEQRSEPSVSITKVTSRCIDSKETVEKPEEKPRKDSFLRSSEGPKPEKIYKSKSETRWGPRPSSNRREEGNDRPVRRSGPIKKPVLRDMKEEREQRKEKEGEKAEKVTERVVKTEKTEKKDLPPPLPPPAPVQPQPLVPPPVQPEPEKLPSTETSASAQKPSQDNEKPLEPVPSVQVEPAVKTGNQQSIAAPTVKEEKQPEKVISKDVGVERLRPDSRPPVKKESPLPPRTYWKDARDRDWFPDQGYRGRGRGEYYSRGRSYRGSYGGRGRGGRGHTRDYPQYRDSKPRTEHGPSGPLRQREESETRSESSDFEVVPKRRRQRGSETDTDSEVHESASDKDSLSKGKFPKREERAENKKPMKPQSFKPENHVRIDNRPLEKPYIRDEDKSKPGFLPKGEPTRRGRGGTFRRGGRDPGSRPSRPATLRRPAYRDNQWNPRQAEPPKPEDGEPPRRHEQFMPIPADRRPPKFERKFDPARERPRRQRPTRPPRQDKPPRFRRLREREAASKTGEVLVTTNGTVNNVVQEPVNPPGDVSGNKTPDLSNQNSSDQANEEWETASESSDFNERRERDEKKNADVSSQTVVKAGENVLPPKREIAKRSFSSQRPGVDRQNRRGNNGPPKSGRNFSGPRNERRNGPPSKSGKRGPFDDQSSGTAGVDPVNGNSAHHQEGAPNGAGQKNPKDATGKKREDTKPGPKKTKEKVDALSQFDLNNYASVVIIDDHPEVTVIEDPQSNLNDDGFTEVVSKKQQKRLQDEERRKKEEQVVQVWNKKNVNEKGRSQASKLPPRFAKKQATGTQQAQAPASAPAPVSSSAAVLPPPAASVPATAPAPAPVPVLASATALVPASAPAQVLTSSPAPVPASASTPVPVSTSSALTASSSPQVSVPAPTPILASASATASVPILTSASIPILASALAPASVSSPTPVVSAPAGPTISTPTAPTPAPVPAPAASVPLAPASTTTTAPAPAPAPAPPAQTQTQTHKPVQSPLPPPTSSSKQPPPSIRLPSAQTSNGTDYVATGKSIQAPQSHGSLTAELWDNKVAAPAVLNDISKKLGPISPPQPPSVSAWNKPLTSFGSATSSEGTRNGQEAGVEIGIDTIQFGAPASNGNENEVVPVLSEKPTDKVPEPKEQRQKQPRAGPIKAQKLPDLSLVENKEHKPGPIGKERSLKNRKVKDAQQAEPEGQEKPSPAVVRSTDPGTSKETKAVSEMSAEIGAMISVSSAEYGTDAKESVTDYTTPSSSLPNTVATNNAKMEDTLVNNVPLPNTLPLPKRETIQQSSSLTSVPPTTFSLTFKMESARKAWENSPNIREKGSPVTSTAPPIVSGVSSSASGSSTANYNSFSSASMPQIPVASVTPTASLSGAGTYTTSSLSTKSTTTSDPPNICKVKPQQLQTSSLPSASHFSQLSCMPSLIAQQQQSPQVYVSQSAAAQIPAFYMDTSHLFNTQHARLAPPSLAQQQGFQPGLSQPTSVQQIPIPIYAPLQGQHQAQLSLGAGPAVSQAQELFSSSIQPYRSQPAFMQSSLSQPSVVLSGTAIHNFPAVQHQELAKAQSGLAFQQTSNTQPIPILYEHQLGQASGLGSSQLIDTHLLQARANLTQASNLYSGQVQQPGQTNFYNTAQSPSALQQVNYGMVTVPLPASQLSLTNFGSTGQPLIALPQTLQPQLQHTTPQAQAQSLSRPAQVSQPFRGLIPAGTQHSMMATTGKMSEMELKAFGGGIDIKPGTPPIGGRSTTPTSSPFRATSTSPNSQSSKMNSIVYQKQFQSAPATVRMTQPFPAQFAPQILSQPNLVPPLVRAPHTNTFPAPVQRPPMALASQMPPPLTTGLMSHARLPHVARGPCGSLSGVRGNQAQAALKAEQDMKAKQRAEVLQSTQRFFSEQQQSKQIGGKGQKVDSDSSKSPETLTDPPGACQEKVEEKPPPAPTITTKPVRTGPIKPQAIKTEETKS", "length": 2868, "header": "tr|A0A9J7G2K2-1|A0A9J7JSD1_CRIGR Computationally mapped isoform of Protein PRRC2C isoform X2 OS=Cricetulus griseus OX=10029 GN=Prrc2c PE=4 SV=1 CANONICAL=A0A9J7JSD1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G503-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G503/entry", "sequence": { "sequence": "MSEKSGQSTKAKDGKKYATLSLFNTYKGKSLETQKTTARHGLQSLGKVGISRRMPPPANLPSLKAENKGNDPNVNIVPKDGTGWASKQEQHEEEKAPEVSPAQPKPGVAAPPEVAPAPKSWASNKQGGQGDGIQVNSQFQQEFPSLQAAGDQEKKEKETNDENYGPGPSLRPPNVACWRDGGKSAGSPSSDQDEKQLGQDESMSITSEQNDILKVVEKRIACGPPQAKLNGQQPTLASPYRAMMPPYMFQQYPRMAYPPLHGPMRFPPSLSETNKGLRGRGPPPSWASEPERPSILSASELKELDKFDNLDAEADEGWAGAQMEVDYTEQLNFSDDDEQGSSSPKENSSEDQSSKTPESTENRKEVDEASGTKSSSQIPAQPPVAKSPYGKGPPFNQERGPSSHLPPPPKLLAQQHPPPPDRQVPGRQGPFPSKPQVPDNDEIWKQRRKQQSEISAAVERARKRREEEERRMEEQRKAACAEKLKQLDEKFGIIEKQPSPEELREREREKEREREKELEKEREQERERERERELEKEREKQKEMEKERQQQKELEQQREKEQELQRVREEEKEVELKEKEKEEKVEPQEPILEPMAEKQESESNCNKEEEPIFTRQDSSRSEKETTQMVQEAEPESGSQPRPAVLSGYFKQFQKSLPPRFQRQQEQMKQQQWQQQQQQQGVLPQTVPSQPSNGSVPPPPHRPLYQPMQPHPQHLASMGFDPRWLMMQSYMDPRMISGRPAMDIPPIHPGMIPPKPLIRRDQMEGSPNSSESFEHIARSARDHGISLSEPRMMWGSDPYHAEPQQAATPKSAEEPRDARTEPALDHEQITAAYPVEHSHLETHSKTDVARDSAETEGHKYLSKSVEDVRPLRADTNNQSACFEVIDQKSLPTPPEERISALESQPARKRSVSHGSNHTQKADEQRSEPSVSITKVTSRCIDSKETVEKPEEKPRKDSFLRSSEGPKPEKIYKSKSETRWGPRPSSNRREEGNDRPVRRSGPIKKPVLRDMKEEREQRKEKEGEKAEKVTERVVKTEKTEKKDLPPPLPPPAPVQPQPLVPPPVQPEPEKLPSTETSASAQKPSQDNEKPLEPVPSVQVEPAVKTGNQQSIAAPTVKEEKQPEKVISKDVGVERLRPDSRPPVKKESPLPPRTYWKDARDRDWFPDQGYRGRGRGEYYSRGRSYRGSYGGRGRGGRGHTRDYPQYRDSKPRTEHGPSGPLRQREESETRSESSDFEVVPKRRRQRGSETDTDSEVHESASDKDSLSKGKFPKREERAENKKPMKPQSFKPENHVRIDNRPLEKPYIRDEDKSKPGFLPKGEPTRRGRGGTFRRGGRDPGSRPSRPATLRRPAYRDNQWNPRQAEPPKPEDGEPPRRHEQFMPIPADRRPPKFERKFDPARERPRRQRPTRPPRQDKPPRFRRLREREAASKTGEVLVTTNGTVNNVVQEPVNPPGDVSGNKTPDLSNQNSSDQANEEWETASESSDFNERRERDEKKNADVSSQTVVKAGENVLPPKREIAKRSFSSQRPGVDRQNRRGNNGPPKSGRNFSGPRNERRNGPPSKSGKRGPFDDQSSGTAGVDPVNGNSAHHQEGAPNGAGQKNPKDATGKKREDTKPGPKKTKEKVDALSQFDLNNYASVVIIDDHPEVTVIEDPQSNLNDDGFTEVVSKKQQKRLQDEERRKKEEQVVQVWNKKNVNEKGRSQASKLPPRFAKKQATGTQQAQAPASAPAPVSSSAAVLPPPAASVPATAPAPAPVPVLASATALVPASAPAQVLTSSPAPVPASASTPVPVSTSSALTASSSPQVSVPAPTPILASASATASVPILTSASIPILASALAPASVSSPTPVVSAPAGPTISTPTAPTPAPVPAPAASVPLAPASTTTTAPAPAPAPAPPAQTQTQTHKPVQSPLPPPTSSSKQPPPSIRLPSAQTSNGTDYVATGKSIQAPQSHGSLTAELWDNKVAAPAVLNDISKKLGPISPPQPPSVSAWNKPLTSFGSATSSEGTRNGQEAGVEIGIDTIQFGAPASNGNENEVVPVLSEKPTDKVPEPKEQRQKQPRAGPIKAQKLPDLSLVENKEHKPGPIGKERSLKNRKVKDAQQAEPEGQEKPSPAVVRSTDPGTSKETKAVSEMSAEIGAMISVSSAEYGTDAKESVTDYTTPSSSLPNTVATNNAKMEDTLVNNVPLPNTLPLPKRETIQQSSSLTSVPPTTFSLTFKMESARKAWENSPNIREKGSPVTSTAPPIVSGVSSSASGSSTANYNSFSSASMPQIPVASVTPTASLSGAGTYTTSSLSTKSTTTSDPPNICKVKPQQLQTSSLPSASHFSQLSCMPSLIAQQQQSPQVYVSQSAAAQIPAFYMDTSHLFNTQHARLAPPSLAQQQGFQPGLSQPTSVQQIPIPIYAPLQGQHQAQLSLGAGPAVSQAQELFSSSIQPYRSQPAFMQSSLSQPSVVLSGTAIHNFPAVQHQELAKAQSGLAFQQTSNTQPIPILYEHQLGQASGLGSSQLIDTHLLQARANLTQASNLYSGQVQQPGQTNFYNTAQSPSALQQVTVPLPASQLSLTNFGSTGQPLIALPQTLQPQLQHTTPQAQAQSLSRPAQVSQPFRGLIPAGTQHSMMATTGKMSEMELKAFGGGIDIKPGTPPIGGRSTTPTSSPFRATSTSPNSQSSKMNSIVYQKQFQSAPATVRMTQPFPAQFAPQILSQPNLVPPLVRAPHTNTFPAPVQRPPMALASQMPPPLTTGLMSHARLPHVARGPCGSLSGVRGNQAQAALKAEQDMKAKQRAEVLQSTQRFFSEQQQSKQIGGKGQKVDSDSSKSPETLTDPPGACQEKVEEKPPPAPTITTKPVRTGPIKPQAIKTEETKS", "length": 2863, "header": "tr|A0A9J7G503-1|A0A9J7JSD1_CRIGR Computationally mapped isoform of Protein PRRC2C isoform X2 OS=Cricetulus griseus OX=10029 GN=Prrc2c PE=4 SV=1 CANONICAL=A0A9J7JSD1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JJ03-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJ03/entry", "sequence": { "sequence": "MSEKSGQSTKAKDGKKYATLSLFNTYKGKSLETQKTTVAARHGLQSLGKVGISRRMPPPANLPSLKAENKGNDPNVNIVPKDGTGWASKQEQHEEEKAPEVSPAQPKPGVAAPPEVAPAPKSWASNKQGGQGDGIQVNSQFQQEFPSLQAAGDQEKKEKETNDENYGPGPSLRPPNVACWRDGGKSAGSPSSDQDEKQLGQDESMSITSEQNDILKVVEKRIACGPPQAKLNGQQPTLASPYRAMMPPYMFQQYPRMAYPPLHGPMRFPPSLSETNKGLRGRGPPPSWASEPERPSILSASELKELDKFDNLDAEADEGWAGAQMEVDYTEQLNFSDDDEQGSSSPKENSSEDQSSKTPESTENRKEVDEASGTKSSSQIPAQPPVAKSPYGKGPPFNQERGPSSHLPPPPKLLAQQHPPPPDRQVPGRQGPFPSKPQVPDNDEIWKQRRKQQSEISAAVERARKRREEEERRMEEQRKAACAEKLKQLDEKFGIIEKQPSPEELREREREKEREREKELEKEREQERERERERELEKEREKQKEMEKERQQQKELEQQREKEQELQRVREEEKEVELKEKEKEEKVEPQEPILEPMAEKQESESNCNKEEEPIFTRQDSSRSEKETTQMVQEAEPESGSQPRPAVLSGYFKQFQKSLPPRFQRQQEQMKQQQWQQQQQQQGVLPQTVPSQPSNGSVPPPPHRPLYQPMQPHPQHLASMGFDPRWLMMQSYMDPRMISGRPAMDIPPIHPGMIPPKPLIRRDQMEGSPNSSESFEHIARSARDHGISLSEPRMMWGSDPYHAEPQQAATPKSAEEPRDARTEPALDHEQITAAYPVEHSHLETHSKTDVARDSAETEGHKYLSKSVEDVRPLRADTNNQSACFEVIDQKSLPTPPEERISALESQPARKRSVSHGSNHTQKADEQRSEPSVSITKVTSRCIDSKETVEKPEEKPRKDSFLRSSEGPKPEKIYKSKSETRWGPRPSSNRREEGNDRPVRRSGPIKKPVLRDMKEEREQRKEKEGEKAEKVTERVVKTEKTEKKDLPPPLPPPAPVQPQPLVPPPVQPEPEKLPSTETSASAQKPSQDNEKPLEPVPSVQVEPAVKTGNQQSIAAPTVKEEKQPEKVISKDVGVERLRPDSRPPVKKESPLPPRTYWKDARDRDWFPDQGYRGRGRGEYYSRGRSYRGSYGGRGRGGRGHTRDYPQYRDSKPRTEHGPSGPLRQREESETRSESSDFEVVPKRRRQRGSETDTDSEVHESASDKDSLSKGKFPKREERAENKKPMKPQSFKPENHVRIDNRPLEKPYIRDEDKSKPGFLPKGEPTRRGRGGTFRRGGRDPGSRPSRPATLRRPAYRDNQWNPRQAEPPKPEDGEPPRRHEQFMPIPADRRPPKFERKFDPARERPRRQRPTRPPRQDKPPRFRRLREREAASKTGEVLVTTNGTVNNVVQEPVNPPGDVSGNKTPDLSNQNSSDQANEEWETASESSDFNERRERDEKKNADVSSQTVVKAGENVLPPKREIAKRSFSSQRPGVDRQNRRGNNGPPKSGRNFSGPRNERRNGPPSKSGKRGPFDDQSSGTAGVDPVNGNSAHHQEGAPNGAGQKNPKDATGKKREDTKPGPKKTKEKVDALSQFDLNNYASVVIIDDHPEVTVIEDPQSNLNDDGFTEVVSKKQQKRLQDEERRKKEEQVVQVWNKKNVNEKGRSQASKLPPRFAKKQATGTQQAQAPASAPAPVSSSAAVLPPPAASVPATAPAPAPVPVLASATALVPASAPAQVLTSSPAPVPASASTPVPVSTSSALTASSSPQVSVPAPTPILASASATASVPILTSASIPILASALAPASVSSPTPVVSAPAGPTISTPTAPTPAPVPAPAASVPLAPASTTTTAPAPAPAPAPPAQTQTQTHKPVQSPLPPPTSSSKQPPPSIRLPSAQTSNGTDYVATGKSIQAPQSHGSLTAELWDNKVAAPAVLNDISKKLGPISPPQPPSVSAWNKPLTSFGSATSSEGTRNGQEAGVEIGIDTIQFGAPASNGNENEVVPVLSEKPTDKVPEPKEQRQKQPRAGPIKAQKLPDLSLVENKEHKPGPIGKERSLKNRKVKDAQQAEPEGQEKPSPAVVRSTDPGTSKETKAVSEMSAEIGAMISVSSAEYGTDAKESVTDYTTPSSSLPNTVATNNAKMEDTLVNNVPLPNTLPLPKRETIQQSSSLTSVPPTTFSLTFKMESARKAWENSPNIREKGSPVTSTAPPIVSGVSSSASGSSTANYNSFSSASMPQIPVASVTPTASLSGAGTYTTSSLSTKSTTTSDPPNICKVKPQQLQTSSLPSASHFSQLSCMPSLIAQQQQSPQVYVSQSAAAQIPAFYMDTSHLFNTQHARLAPPSLAQQQGFQPGLSQPTSVQQIPIPIYAPLQGQHQAQLSLGAGPAVSQAQELFSSSIQPYRSQPAFMQSSLSQPSVVLSGTAIHNFPAVQHQELAKAQSGLAFQQTSNTQPIPILYEHQLGQASGLGSSQLIDTHLLQARANLTQASNLYSGQVQQPGQTNFYNTAQSPSALQQVTVPLPASQLSLTNFGSTGQPLIALPQTLQPQLQHTTPQAQAQSLSRPAQVSQPFRGLIPAGTQHSMMATTGKMSEMELKAFGGGIDIKPGTPPIGGRSTTPTSSPFRATSTSPNSQSSKMNSIVYQKQFQSAPATVRMTQPFPAQFAPQAKQRAEVLQSTQRFFSEQQQSKQIGGKGQKVDSDSSKSPETLTDPPGACQEKVEEKPPPAPTITTKPVRTGPIKPQAIKTEETKS", "length": 2786, "header": "tr|A0A9J7JJ03-1|A0A9J7JSD1_CRIGR Computationally mapped isoform of Protein PRRC2C isoform X2 OS=Cricetulus griseus OX=10029 GN=Prrc2c PE=4 SV=1 CANONICAL=A0A9J7JSD1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JNZ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNZ0/entry", "sequence": { "sequence": "MSEKSGQSTKAKDGKKYATLSLFNTYKGKSLETQKTTVAARHGLQSLGKVGISRRMPPPANLPSLKAENKGNDPNVNIVPKDGTGWASKQEQHEEEKAPEVSPAQPKPGVAAPPEVAPAPKSWASNKQGGQGDGIQVNSQFQQEFPSLQAAGDQEKKEKETNDENYGPGPSLRPPNVACWRDGGKSAGSPSSDQDEKQLGQDESMSITSEQNDILKVVEKRIACGPPQAKLNGQQPTLASPYRAMMPPYMFQQYPRMAYPPLHGPMRFPPSLSETNKGLRGRGPPPSWASEPERPSILSASELKELDKFDNLDAEADEGWAGAQMEVDYTEQLNFSDDDEQGSSSPKENSSEDQSSKTPESTENRKEVDEASGTKSSSQIPAQPPVAKSPYGKGPPFNQERGPSSHLPPPPKLLAQQHPPPPDRQVPGRQGPFPSKPQVPDNDEIWKQRRKQQSEISAAVERARKRREEEERRMEEQRKAACAEKLKQLDEKFGIIEKQPSPEELREREREKEREREKELEKEREQERERERERELEKEREKQKEMEKERQQQKELEQQREKEQELQRVREEEKEVELKEKEKEEKVEPQEPILEPMAEKQESESNCNKEEEPIFTRQDSSRSEKETTQMVQEAEPESGSQPRPAVLSGYFKQFQKSLPPRFQRQQEQMKQQQWQQQQQQQGVLPQTVPSQPSNGSVPPPPHRPLYQPMQPHPQHLASMGFDPRWLMMQSYMDPRMISGRPAMDIPPIHPGMIPPKPLIRRDQMEGSPNSSESFEHIARSARDHGISLSEPRMMWGSDPYHAEPQQAATPKSAEEPRDARTEPALDHEQITAAYPVEHSHLETHSKTDVARDSAETEGHKYLSKSVEDVRPLRADTNNQSACFEVIDQKSLPTPPEERISALESQPARKRSVSHGSNHTQKADEQRSEPSVSITKVTSRCIDSKETVEKPEEKPRKDSFLRSSEGPKPEKIYKSKSETRWGPRPSSNRREEGNDRPVRRSGPIKKPVLRDMKEEREQRKEKEGEKAEKVTERVVKTEKTEKKDLPPPLPPPAPVQPQPLVPPPVQPEPEKLPSTETSASAQKPSQDNEKPLEPVPSVQVEPAVKTGNQQSIAAPTVKEEKQPEKVISKDVGVERLRPDSRPPVKKESPLPPRTYWKDARDRDWFPDQGYRGRGRGEYYSRGRSYRGSYGGRGRGGRGHTRDYPQYRDSKPRTEHGPSGPLRQREESETRSESSDFEVVPKRRRQRGSETDTDSEVHESASDKDSLSKGKFPKREERAENKKPMKPQSFKPENHVRIDNRPLEKPYIRDEDKSKPGFLPKGEPTRRGRGGTFRRGGRDPGSRPSRPATLRRPAYRDNQWNPRQAEPPKPEDGEPPRRHEQFMPIPADRRPPKFERKFDPARERPRRQRPTRPPRQDKPPRFRRLREREAASKTGEVLVTTNGTVNNVVQEPVNPPGDVSGNKTPDLSNQNSSDQANEEWETASESSDFNERRERDEKKNADVSSQTVVKAGENVLPPKREIAKRSFSSQRPGVDRQNRRGNNGPPKSGRNFSGPRNERRNGPPSKSGKRGPFDDQSSGTAGVDPVNGNSAHHQEGAPNGAGQKNPKDATGKKREDTKPGPKKTKEKVDALSQFDLNNYASVVIIDDHPEVTVIEDPQSNLNDDGFTEVVSKKQQKRLQDEERRKKEEQVVQVWNKKNVNEKGRSQASKLPPRFAKKQATGTQQAQAPASAPAPVSSSAAVLPPPAASVPATAPAPAPVPVLASATALVPASAPAQVLTSSPAPVPASASTPVPVSTSSALTASSSPQVSVPAPTPILASASATASVPILTSASIPILASALAPASVSSPTPVVSAPAGPTISTPTAPTPAPVPAPAASVPLAPASTTTTAPAPAPAPAPPAQTQTQTHKPVQSPLPPPTSSSKQPPPSIRLPSAQTSNGTDYVATGKSIQAPQSHGSLTAELWDNKVAAPAVLNDISKKLGPISPPQPPSVSAWNKPLTSFGSATSSEGTRNGQEAGVEIGIDTIQFGAPASNGNENEVVPVLSEKPTDKVPEPKEQRQKQPRAGPIKAQKLPDLSLVENKEHKPGPIGKERSLKNRKVKDAQQAEPEGQEKPSPAVVRSTDPGTSKETKAVSEMSAEIGAMISVSSAEYGTDAKESVTDYTTPSSSLPNTVATNNAKMEDTLVNNVPLPNTLPLPKRETIQQSSSLTSVPPTTFSLTFKMESARKAWENSPNIREKGSPVTSTAPPIVSGVSSSASGSSTANYNSFSSASMPQIPVASVTPTASLSGAGTYTTSSLSTKSTTTSDPPNICKVKPQQLQTSSLPSASHFSQLSCMPSLIAQQQQSPQVYVSQSAAAQIPAFYMDTSHLFNTQHARLAPPSLAQQQGFQPGLSQPTSVQQIPIPIYAPLQGQHQAQLSLGAGPAVSQAQELFSSSIQPYRSQPAFMQSSLSQPSVVLSGTAIHNFPAVQHQELAKAQSGLAFQQTSNTQPIPILYEHQLGQASGLGSSQLIDTHLLQARANLTQASNLYSGQVQQPGQTNFYNTAQSPSALQQVNYGMVTVPLPASQLSLTNFGSTGQPLIALPQTLQPQLQHTTPQAQAQSLSRPAQVSQPFRGLIPAGTQHSMMATTGKMSEMELKAFGGGIDIKPGTPPIGGRSTTPTSSPFRATSTSPNSQSSKMNSIVYQKQFQSAPATVRMTQPFPAQFAPQILSQPNLVPPLVRAPHTNTFPAPVQRPPMALASQMPPPLTTGLMSHARLPHVARGPCGSLSGVRGNQAQAALKAEQDMKRRAVGRGLSHKPFGPRCWQSREQRFFSPRNGSSLNNNRANR", "length": 2826, "header": "tr|A0A9J7JNZ0-1|A0A9J7JNZ0_CRIGR Computationally mapped isoform of Protein PRRC2C isoform X8 OS=Cricetulus griseus OX=10029 GN=Prrc2c PE=4 SV=1 CANONICAL=A0A9J7JSD1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JQR5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQR5/entry", "sequence": { "sequence": "MSEKSGQSTKAKDGKKYATLSLFNTYKGKSLETQKTTVAARHGLQSLGKVGISRRMPPPANLPSLKAENKGNDPNVNIVPKDGTGWASKQEQHEEEKAPEVSPAQPKPGVAAPPEVAPAPKSWASNKQGGQGDGIQVNSQFQQEFPSLQAAGDQEKKEKETNDENYGPGPSLRPPNVACWRDGGKSAGSPSSDQDEKQLGQDESMSITSEQNDILKVVEKRIACGPPQAKLNGQQPTLASPYRAMMPPYMFQQYPRMAYPPLHGPMRFPPSLSETNKGLRGRGPPPSWASEPERPSILSASELKELDKFDNLDAEADEGWAGAQMEVDYTEQLNFSDDDEQGSSSPKENSSEDQSSKTPESTENRKEVDEASGTKSSSQIPAQPPVAKSPYGKGPPFNQERGPSSHLPPPPKLLAQQHPPPPDRQVPGRQGPFPSKPQVPDNDEIWKQRRKQQSEISAAVERARKRREEEERRMEEQRKAACAEKLKQLDEKFGIIEKQPSPEELREREREKEREREKELEKEREQERERERERELEKEREKQKEMEKERQQQKELEQQREKEQELQRVREEEKEVELKEKEKEEKVEPQEPILEPMAEKQESESNCNKEEEPIFTRQDSSRSEKETTQMVQEAEPESGSQPRPAVLSGYFKQFQKSLPPRFQRQQEQMKQQQWQQQQQQQGVLPQTVPSQPSNGSVPPPPHRPLYQPMQPHPQHLASMGFDPRWLMMQSYMDPRMISGRPAMDIPPIHPGMIPPKPLIRRDQMEGSPNSSESFEHIARSARDHGISLSEPRMMWGSDPYHAEPQQAATPKSAEEPRDARTEPALDHEQITAAYPVEHSHLETHSKTDVARDSAETEGHKYLSKSVEDVRPLRADTNNQSACFEVIDQKSLPTPPEERISALESQPARKRSVSHGSNHTQKADEQRSEPSVSITKVTSRCIDSKETVEKPEEKPRKDSFLRSSEGPKPEKIYKSKSETRWGPRPSSNRREEGNDRPVRRSGPIKKPVLRDMKEEREQRKEKEGEKAEKVTERVVKTEKTEKKDLPPPLPPPAPVQPQPLVPPPVQPEPEKLPSTETSASAQKPSQDNEKPLEPVPSVQVEPAVKTGNQQSIAAPTVKEEKQPEKVISKDVGVERLRPDSRPPVKKESPLPPRTYWKDARDRDWFPDQGYRGRGRGEYYSRGRSYRGSYGGRGRGGRGHTRDYPQYRDSKPRTEHGPSGPLRQREESETRSESSDFEVVPKRRRQRGSETDTDSEVHESASDKDSLSKGKFPKREERAENKKPMKPQSFKPENHVRIDNRPLEKPYIRDEDKSKPGFLPKGEPTRRGRGGTFRRGGRDPGSRPSRPATLRRPAYRDNQWNPRQAEPPKPEDGEPPRRHEQFMPIPADRRPPKFERKFDPARERPRRQRPTRPPRQDKPPRFRRLREREAASKTGEVLVTTNGTVNNVVQEPVNPPGDVSGNKTPDLSNQNSSDQANEEWETASESSDFNERRERDEKKNADVSSQTVVKAGENVLPPKREIAKRSFSSQRPGVDRQNRRGNNGPPKSGRNFSGPRNERRNGPPSKSGKRGPFDDQSSGTAGVDPVNGNSAHHQEGAPNGAGQKNPKDATGKKREDTKPGPKKTKEKVDALSQFDLNNYASVVIIDDHPEVTVIEDPQSNLNDDGFTEVVSKKQQKRLQDEERRKKEEQVVQVWNKKNVNEKGRSQASKLPPRFAKKQATGTQQAQAPASAPAPVSSSAAVLPPPAASVPATAPAPAPVPVLASATALVPASAPAQVLTSSPAPVPASASTPVPVSTSSALTASSSPQVSVPAPTPILASASATASVPILTSASIPILASALAPASVSSPTPVVSAPAGPTISTPTAPTPAPVPAPAASVPLAPASTTTTAPAPAPAPAPPAQTQTQTHKPVQSPLPPPTSSSKQPPPSIRLPSAQTSNGTDYVATGKSIQAPQSHGSLTAELWDNKVAAPAVLNDISKKLGPISPPQPPSVSAWNKPLTSFGSATSSEGTRNGQEAGVEIGIDTIQFGAPASNGNENEVVPVLSEKPTDKVPEPKEQRQKQPRAGPIKAQKLPDLSLVENKEHKPGPIGKERSLKNRKVKDAQQAEPEGQEKPSPAVVRSTDPGTSKETKAVSEMSAEIGAMISVSSAEYGTDAKESVTDYTTPSSSLPNTVATNNAKMEDTLVNNVPLPNTLPLPKRETIQQSSSLTSVPPTTFSLTFKMESARKAWENSPNIREKGSPVTSTAPPIVSGVSSSASGSSTANYNSFSSASMPQIPVASVTPTASLSGAGTYTTSSLSTKSTTTSDPPNICKVKPQQLQTSSLPSASHFSQLSCMPSLIAQQQQSPQVYVSQSAAAQIPAFYMDTSHLFNTQHARLAPPSLAQQQGFQPGLSQPTSVQQIPIPIYAPLQGQHQAQLSLGAGPAVSQAQELFSSSIQPYRSQPAFMQSSLSQPSVVLSGTAIHNFPAVQHQELAKAQSGLAFQQTSNTQPIPILYEHQLGQASGLGSSQLIDTHLLQARANLTQASNLYSGQVQQPGQTNFYNTAQSPSALQQVNYGMVTVPLPASQLSLTNFGSTGQPLIALPQTLQPQLQHTTPQAQAQSLSRPAQVSQPFRGLIPAGTQHSMMATTGKMSEMELKAFGGGIDIKPGTPPIGGRSTTPTSSPFRATSTSPNSQSSKMNSIVYQKQFQSAPATVRMTQPFPAQFAPQRRAVGRGLSHKPFGPRCWQSREQRFFSPRNGSSLNNNRANR", "length": 2747, "header": "tr|A0A9J7JQR5-1|A0A9J7JQR5_CRIGR Computationally mapped isoform of Protein PRRC2C isoform X11 OS=Cricetulus griseus OX=10029 GN=Prrc2c PE=4 SV=1 CANONICAL=A0A9J7JSD1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JSD1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSD1/entry", "sequence": { "sequence": "MSEKSGQSTKAKDGKKYATLSLFNTYKGKSLETQKTTVAARHGLQSLGKVGISRRMPPPANLPSLKAENKGNDPNVNIVPKDGTGWASKQEQHEEEKAPEVSPAQPKPGVAAPPEVAPAPKSWASNKQGGQGDGIQVNSQFQQEFPSLQAAGDQEKKEKETNDENYGPGPSLRPPNVACWRDGGKSAGSPSSDQDEKQLGQDESMSITSEQNDILKVVEKRIACGPPQAKLNGQQPTLASPYRAMMPPYMFQQYPRMAYPPLHGPMRFPPSLSETNKGLRGRGPPPSWASEPERPSILSASELKELDKFDNLDAEADEGWAGAQMEVDYTEQLNFSDDDEQGSSSPKENSSEDQSSKTPESTENRKEVDEASGTKSSSQIPAQPPVAKSPYGKGPPFNQERGPSSHLPPPPKLLAQQHPPPPDRQVPGRQGPFPSKPQVPDNDEIWKQRRKQQSEISAAVERARKRREEEERRMEEQRKAACAEKLKQLDEKFGIIEKQPSPEELREREREKEREREKELEKEREQERERERERELEKEREKQKEMEKERQQQKELEQQREKEQELQRVREEEKEVELKEKEKEEKVEPQEPILEPMAEKQESESNCNKEEEPIFTRQDSSRSEKETTQMVQEAEPESGSQPRPAVLSGYFKQFQKSLPPRFQRQQEQMKQQQWQQQQQQQGVLPQTVPSQPSNGSVPPPPHRPLYQPMQPHPQHLASMGFDPRWLMMQSYMDPRMISGRPAMDIPPIHPGMIPPKPLIRRDQMEGSPNSSESFEHIARSARDHGISLSEPRMMWGSDPYHAEPQQAATPKSAEEPRDARTEPALDHEQITAAYPVEHSHLETHSKTDVARDSAETEGHKYLSKSVEDVRPLRADTNNQSACFEVIDQKSLPTPPEERISALESQPARKRSVSHGSNHTQKADEQRSEPSVSITKVTSRCIDSKETVEKPEEKPRKDSFLRSSEGPKPEKIYKSKSETRWGPRPSSNRREEGNDRPVRRSGPIKKPVLRDMKEEREQRKEKEGEKAEKVTERVVKTEKTEKKDLPPPLPPPAPVQPQPLVPPPVQPEPEKLPSTETSASAQKPSQDNEKPLEPVPSVQVEPAVKTGNQQSIAAPTVKEEKQPEKVISKDVGVERLRPDSRPPVKKESPLPPRTYWKDARDRDWFPDQGYRGRGRGEYYSRGRSYRGSYGGRGRGGRGHTRDYPQYRDSKPRTEHGPSGPLRQREESETRSESSDFEVVPKRRRQRGSETDTDSEVHESASDKDSLSKGKFPKREERAENKKPMKPQSFKPENHVRIDNRPLEKPYIRDEDKSKPGFLPKGEPTRRGRGGTFRRGGRDPGSRPSRPATLRRPAYRDNQWNPRQAEPPKPEDGEPPRRHEQFMPIPADRRPPKFERKFDPARERPRRQRPTRPPRQDKPPRFRRLREREAASKTGEVLVTTNGTVNNVVQEPVNPPGDVSGNKTPDLSNQNSSDQANEEWETASESSDFNERRERDEKKNADVSSQTVVKAGENVLPPKREIAKRSFSSQRPGVDRQNRRGNNGPPKSGRNFSGPRNERRNGPPSKSGKRGPFDDQSSGTAGVDPVNGNSAHHQEGAPNGAGQKNPKDATGKKREDTKPGPKKTKEKVDALSQFDLNNYASVVIIDDHPEVTVIEDPQSNLNDDGFTEVVSKKQQKRLQDEERRKKEEQVVQVWNKKNVNEKGRSQASKLPPRFAKKQATGTQQAQAPASAPAPVSSSAAVLPPPAASVPATAPAPAPVPVLASATALVPASAPAQVLTSSPAPVPASASTPVPVSTSSALTASSSPQVSVPAPTPILASASATASVPILTSASIPILASALAPASVSSPTPVVSAPAGPTISTPTAPTPAPVPAPAASVPLAPASTTTTAPAPAPAPAPPAQTQTQTHKPVQSPLPPPTSSSKQPPPSIRLPSAQTSNGTDYVATGKSIQAPQSHGSLTAELWDNKVAAPAVLNDISKKLGPISPPQPPSVSAWNKPLTSFGSATSSEGTRNGQEAGVEIGIDTIQFGAPASNGNENEVVPVLSEKPTDKVPEPKEQRQKQPRAGPIKAQKLPDLSLVENKEHKPGPIGKERSLKNRKVKDAQQAEPEGQEKPSPAVVRSTDPGTSKETKAVSEMSAEIGAMISVSSAEYGTDAKESVTDYTTPSSSLPNTVATNNAKMEDTLVNNVPLPNTLPLPKRETIQQSSSLTSVPPTTFSLTFKMESARKAWENSPNIREKGSPVTSTAPPIVSGVSSSASGSSTANYNSFSSASMPQIPVASVTPTASLSGAGTYTTSSLSTKSTTTSDPPNICKVKPQQLQTSSLPSASHFSQLSCMPSLIAQQQQSPQVYVSQSAAAQIPAFYMDTSHLFNTQHARLAPPSLAQQQGFQPGLSQPTSVQQIPIPIYAPLQGQHQAQLSLGAGPAVSQAQELFSSSIQPYRSQPAFMQSSLSQPSVVLSGTAIHNFPAVQHQELAKAQSGLAFQQTSNTQPIPILYEHQLGQASGLGSSQLIDTHLLQARANLTQASNLYSGQVQQPGQTNFYNTAQSPSALQQVNYGMVTVPLPASQLSLTNFGSTGQPLIALPQTLQPQLQHTTPQAQAQSLSRPAQVSQPFRGLIPAGTQHSMMATTGKMSEMELKAFGGGIDIKPGTPPIGGRSTTPTSSPFRATSTSPNSQSSKMNSIVYQKQFQSAPATVRMTQPFPAQFAPQILSQPNLVPPLVRAPHTNTFPAPVQRPPMALASQMPPPLTTGLMSHARLPHVARGPCGSLSGVRGNQAQAALKAEQDMKAKQRAEVLQSTQRFFSEQQQSKQIGGKGQKVDSDSSKSPETLTDPPGACQEKVEEKPPPAPTITTKPVRTGPIKPQAIKTEETKS", "length": 2870, "header": "tr|A0A9J7JSD1-1|A0A9J7JSD1_CRIGR Isoform 1 of Protein PRRC2C isoform X2 OS=Cricetulus griseus OX=10029 GN=Prrc2c PE=4 SV=1 CANONICAL=A0A9J7JSD1-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1813, "start_aa": "Thr", "end_pos": 1813, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1813", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1849, "start_aa": "Thr", "end_pos": 1849, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1849", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1859, "start_aa": "Thr", "end_pos": 1859, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1859", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1867, "start_aa": "Thr", "end_pos": 1867, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1867", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 2282, "start_aa": "Thr", "end_pos": 2282, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2282", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTI9" } ] }, { "name": "Trpc4ap", "type": "synonym", "evidence": [ { "id": "XP_027277173", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027277173" } ] } ], "protein_names": [ { "name": "Short transient receptor potential channel 4-associated protein isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7JTI9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTI9/entry#names_and_taxonomy" } ] }, { "name": "short transient receptor potential channel 4-associated protein isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027277173", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027277173" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027277173", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027277173" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JTI9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTI9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Trpc4ap", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTI9", "locus": {} } ], "crossref": [ { "id": "A0A9J7JTI9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JTI9", "database": "AlphaFoldDB", "categories": [] }, { "id": "100753499", "url": "https://www.ncbi.nlm.nih.gov/gene/100753499", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022162", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022162", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100753499", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753499", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JTI9", "url": "https://www.orthodb.org/?gene=A0A9J7JTI9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31743", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31743", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31743:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31743:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12463", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12463", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027277173", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027277173", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N102", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N102", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N102-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N102-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G533", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G533", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G533-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G533-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G5R8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5R8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G5R8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5R8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JTI9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTI9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JTI9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTI9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAAPAAAGAGASRGRQSAATAAAWGGWGGRPRPGNILLQLRQGQLTGRGLVRAVQFTETFLTERDKLSKWSGIPQLLLKLHATSHLHSDFIECQNILKEISPLLSMEAMAFVTEDRKLTQEATYPNTYIFDLFGGVDLLVEILMRPTISIRGQKLKMSDEMSKDCLSILYNTCVCTEGVTKRLAEKNDFVIFLFTLMTSKKTFLQTATLIEDILGVKKEMIRLDEVPNLSSLVSNFDQQQLANFCRILAVTISEMDTGNDDKHTLLAKNAQQKKSLSLGPSAAEINQAALLSIPGFVERLCKLATRKVSESTGTASFLQELEEWYTWLDNALVLDALMRVASEESEHSQASTVSPPVGTSGDNALPHTSARTQLPQSMKIMHEIMYKLEVLYVLCVLLMGRQRNQVHRMIAEFKLIPGLNNLFDKLIWRKHSASALVLHGHNQNCDCSPDITLKIQFLRLLQSFSDHHENKYLLLNNQELNELSAISLKANIPEVEAVLNTDRSLVCDGKRGLLTRLLQVMKKEPAESSFRFWQARAVESFLRGTTSYADQMFLLKRGLLEHILYCIVDSECKSRDVLQSYFDLLGELMKFNVDAFKRFNKYINTDAKFQVFLKQINSSLVDSNMLVRCVTLSLDRFENQVDMKVAEVLSECRLLAYISQVPTQMSFLFRLINIIHVQTLTQENVSCLNTSLVILMLARRKERLPLYLRLLQRMEHSKKYPGFLLNNFHNLLRFWQQHYLHKDKDSTCLENSSCISFSYWKETVSILLNPDRQSPSALVSYIEEPYMDIDRDFTEE", "length": 797, "header": "tr|A0A9J7JTI9-1|A0A9J7JTI9_CRIGR Isoform 1 of Short transient receptor potential channel 4-associated protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Trpc4ap PE=4 SV=1 CANONICAL=A0A9J7JTI9-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N102-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N102/entry", "sequence": { "sequence": "MAAAPAAAGAGASRGRQSAATAAAWGGWGGRPRPGNILLQLRQGQLTGRGLVRAVQFTETFLTERDKLSKWSGIPQLLLKLHATSHLHSDFIECQNILKEISPLLSMEAMAFVTEDRKLTQEATYPNTYIFDLFGGVDLLVEILMRPTISIRGQKLKMSDEMSKDCLSILYNTCVCTEGVTKRLAEKNDFVIFLFTLMTSKKTFLQTATLIEDILGVKKEMIRLDEVPNLSSLVSNFDQQQLANFCRILAVTISEMDTGNDDKHTLLAKNAQQKKSLSLGPSAAEINQAALLSIPGFVERLCKLATRKVSESTGTASFLQELEEWYTWLDNALVLDALMRVASEESEHSQGTSGDNALPHTSARTQLPQSMKIMHEIMYKLEVLYVLCVLLMGRQRNQVHRMIAEFKLIPGLNNLFDKLIWRKHSASALVLHGHNQNCDCSPDITLKIQFLRLLQSFSDHHENKYLLLNNQELNELSAISLKANIPEVEAVLNTDRSLVCDGKRGLLTRLLQVMKKEPAESSFRFWQARAVESFLRGTTSYADQMFLLKRGLLEHILYCIVDSECKSRDVLQSYFDLLGELMKFNVDAFKRFNKYINTDAKFQVFLKQINSSLVDSNMLVRCVTLSLDRFENQVDMKVAEVLSECRLLAYISQVPTQMSFLFRLINIIHVQTLTQENVSCLNTSLVILMLARRKERLPLYLRLLQRMEHSKKYPGFLLNNFHNLLRFWQQHYLHKDKDSTCLENSSCISFSYWKETVSILLNPDRQSPSALVSYIEEPYMDIDRDFTEE", "length": 789, "header": "tr|A0A8C2N102-1|A0A9J7JTI9_CRIGR Computationally mapped isoform of Short transient receptor potential channel 4-associated protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Trpc4ap PE=4 SV=1 CANONICAL=A0A9J7JTI9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G533-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G533/entry", "sequence": { "sequence": "MAAAPAAAGAGASRGRQSAATAAAWGGWGGRPRPGNILLQLRQGQLTGRGLVRAVQFTETFLTERDKLSKWSGIPQLLLKLHATSHLHSDFIECQNILKLLVEILMRPTISIRGQKLKMSDEMSKDCLSILYNTCVCTEGVTKRLAEKNDFVIFLFTLMTSKKTFLQTATLIEDILGVKKEMIRLDEVPNLSSLVSNFDQQQLANFCRILAVTISEMDTGNDDKHTLLAKNAQQKKSLSLGPSAAEINQAALLSIPGFVERLCKLATRKVSESTGTASFLQELEEWYTWLDNALVLDALMRVASEESEHSQASTVSPPVGTSGDNALPHTSARTQLPQSMKIMHEIMYKLEVLYVLCVLLMGRQRNQVHRMIAEFKLIPGLNNLFDKLIWRKHSASALVLHGHNQNCDCSPDITLKIQFLRLLQSFSDHHENKYLLLNNQELNELSAISLKANIPEVEAVLNTDRSLVCDGKRGLLTRLLQVMKKEPAESSFRFWQARAVESFLRGTTSYADQMFLLKRGLLEHILYCIVDSECKSRDVLQSYFDLLGELMKFNVDAFKRFNKYINTDAKFQVFLKQINSSLVDSNMLVRCVTLSLDRFENQVDMKVAEVLSECRLLAYISQVPTQMSFLFRLINIIHVQTLTQENVSCLNTSLVILMLARRKERLPLYLRLLQRMEHSKKYPGFLLNNFHNLLRFWQQHYLHKDKDSTCLENSSCISFSYWKETVSILLNPDRQSPSALVSYIEEPYMDIDRDFTEE", "length": 758, "header": "tr|A0A9J7G533-1|A0A9J7JTI9_CRIGR Computationally mapped isoform of Short transient receptor potential channel 4-associated protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Trpc4ap PE=4 SV=1 CANONICAL=A0A9J7JTI9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G5R8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5R8/entry", "sequence": { "sequence": "MAAAPAAAGAGASRGRQSAATAAAWGGWGGRPRPGNILLQLRQGQLTGRGLVRAVQFTETFLTERDKLSKWSGIPQLLLKLHATSHLHSDFIECQNILKEISPLLSMEAMAFVTEDRKLTQEATYPNTYIFDLFGGVDLLVEILMRPTISIRGQKLKMSDEMSKDCLSILYNTCVCTEGVTKRLAEKNDFVIFLFTLMTSKKTFLQTATLIEDILGVKKEMIRLDEVPNLSSLVSNFDQQQLANFCRILAVTISEMDTGNDDKHTLLAKNAQQKKSLSLGPSAAEINQAALLSIPGFVERLCKLATRKVSESTGTASFLQELEEWYTWLDNALVLDALMRVASEESEHSQASTVSPPVGTSGDNALPHTSARTQLPQSMKIMHEIMYKLEVLYVLCVLLMGRQRNQVHRMIAEFKLIPGLNNLFDKLIWRKHSASALVLHGHNQNCDCSPDITLKIQFLRLLQSFSDHHESLVCDGKRGLLTRLLQVMKKEPAESSFRFWQARAVESFLRGTTSYADQMFLLKRGLLEHILYCIVDSECKSRDVLQSYFDLLGELMKFNVDAFKRFNKYINTDAKFQVFLKQINSSLVDSNMLVRCVTLSLDRFENQVDMKVAEVLSECRLLAYISQVPTQMSFLFRLINIIHVQTLTQENVSCLNTSLVILMLARRKERLPLYLRLLQRMEHSKKYPGFLLNNFHNLLRFWQQHYLHKDKDSTCLENSSCISFSYWKETVSILLNPDRQSPSALVSYIEEPYMDIDRDFTEE", "length": 763, "header": "tr|A0A9J7G5R8-1|A0A9J7JTI9_CRIGR Computationally mapped isoform of Short transient receptor potential channel 4-associated protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Trpc4ap PE=4 SV=1 CANONICAL=A0A9J7JTI9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JTI9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTI9/entry", "sequence": { "sequence": "MAAAPAAAGAGASRGRQSAATAAAWGGWGGRPRPGNILLQLRQGQLTGRGLVRAVQFTETFLTERDKLSKWSGIPQLLLKLHATSHLHSDFIECQNILKEISPLLSMEAMAFVTEDRKLTQEATYPNTYIFDLFGGVDLLVEILMRPTISIRGQKLKMSDEMSKDCLSILYNTCVCTEGVTKRLAEKNDFVIFLFTLMTSKKTFLQTATLIEDILGVKKEMIRLDEVPNLSSLVSNFDQQQLANFCRILAVTISEMDTGNDDKHTLLAKNAQQKKSLSLGPSAAEINQAALLSIPGFVERLCKLATRKVSESTGTASFLQELEEWYTWLDNALVLDALMRVASEESEHSQASTVSPPVGTSGDNALPHTSARTQLPQSMKIMHEIMYKLEVLYVLCVLLMGRQRNQVHRMIAEFKLIPGLNNLFDKLIWRKHSASALVLHGHNQNCDCSPDITLKIQFLRLLQSFSDHHENKYLLLNNQELNELSAISLKANIPEVEAVLNTDRSLVCDGKRGLLTRLLQVMKKEPAESSFRFWQARAVESFLRGTTSYADQMFLLKRGLLEHILYCIVDSECKSRDVLQSYFDLLGELMKFNVDAFKRFNKYINTDAKFQVFLKQINSSLVDSNMLVRCVTLSLDRFENQVDMKVAEVLSECRLLAYISQVPTQMSFLFRLINIIHVQTLTQENVSCLNTSLVILMLARRKERLPLYLRLLQRMEHSKKYPGFLLNNFHNLLRFWQQHYLHKDKDSTCLENSSCISFSYWKETVSILLNPDRQSPSALVSYIEEPYMDIDRDFTEE", "length": 797, "header": "tr|A0A9J7JTI9-1|A0A9J7JTI9_CRIGR Isoform 1 of Short transient receptor potential channel 4-associated protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Trpc4ap PE=4 SV=1 CANONICAL=A0A9J7JTI9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N102", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N102" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N102", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N102" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100753499", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753499", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "Cul4A-RING E3 ubiquitin ligase complex", "id": "GO:0031464", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031464", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JTI9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTI9" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JTI9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTI9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JTI9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTI9" } ], "pmid": "" }, { "name": "ubiquitin-dependent protein catabolic process via the C-end degron rule pathway", "id": "GO:0140627", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140627", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JTI9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTI9" } ], "pmid": "" }, { "name": "ubiquitin-dependent protein catabolic process", "id": "GO:0006511", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006511", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JTI9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTI9" } ], "pmid": "" } ] }, { "name": "Molecular 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JL39-1", "uniprot_ac": "A0A9J7JL39", "uniprot_id": "A0A9J7JL39_CRIGR", "mass": { "chemical_mass": 394422.0, "monoisotopic_mass": 394422.0 }, "refseq": { "ac": "XP_027264900", "name": "proliferation marker protein Ki-67 isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264900" }, "gene_names": [ { "name": "Mki67", "type": "recommended", "evidence": [ { "id": "A0A9J7JL39", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JL39" } ] }, { "name": "Mki67", "type": "synonym", "evidence": [ { "id": "XP_027264900", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264900" } ] } ], "protein_names": [ { "name": "Proliferation marker protein Ki-67 isoform X4", "type": "synonym", "evidence": [ { "id": "A0A9J7JL39", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JL39/entry#names_and_taxonomy" } ] }, { "name": "proliferation marker protein Ki-67 isoform X4", "type": "synonym", "evidence": [ { "id": "XP_027264900", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264900" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027264900", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264900" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JL39", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JL39" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Mki67", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JL39", "locus": {} } ], "crossref": [ { "id": "cd22673", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22673", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100756884", "url": "https://www.ncbi.nlm.nih.gov/gene/100756884", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000253", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000253", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008984", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008984", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012568", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012568", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029334", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029334", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100756884", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756884", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JL39", "url": "https://www.orthodb.org/?gene=A0A9J7JL39", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21603", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21603", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21603:SF17", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21603:SF17", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00498", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00498", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08065", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08065", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15276", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15276", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027264900", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264900", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FP85", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP85", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FP85-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP85-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JKF6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKF6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JKF6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKF6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JL39", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JL39", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JL39-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JL39-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASSARLVTIKRSGGDGAHFPLSLSSCLFGRSIECDIRIQLPVVSKKHCKIEVNKQQAILYNFSSTNPAQVNGATIDEPVQLKHGDIITIIDRSFRYENGNHEDGSGSTGFPEKSLGQEPARRASRASFSDDSDGKGQDAKSSKTTASRRSSVHDKKFLGDSSASDGSKDSVTQDLSNTCSSGHVEQHSGRNLGESTSSDLFKKSRATGSSYRELKSSPAHSLSNSKKNESPFEKLYQSMKEELDIKSQKPSRRKSEPQPECAAEKEMWETKLLVSCKSRAKSSGSTPETAPSSPKVGKVWTENQNSAVRPLQTSTEALSSSFSLAETAKTKTPVRTSQQLEDFHVSSRRESVNLDESEGAKAVHKIVTPRKSGTRNQTPVKVEYAASPADTPENLFSKKRRSIPAKVEVLSAETQNRSSSIQHLAPGEKKTPKEAFSKPEKLATAAEQICSGLPGLSSVDISNFGDSINKSEGMSLKRRRVSFGGRLRPELFDENLPPNTPLKRGETPIKRKSLAPHTPAVLKKIIKERPQSPGKLESPGVTPPTANDERRRSGRILPASDGSKSLHQTDTPKKAGRKSGNLPAKRASISRSQHDILQMICSKRRSGASEANLIVAKSWADVVKLGAKQTQTKVVKHVPQKQTSKRQRRPNTPKKPTSNLHNQFSTGHANSPCTIVIGRAQIEKVSMPARPYKMLNNLMLNRKMDFNEDLSGLTEMFKTPVKENQQQMNDKASILSNSGNLPEKQFEVTNSENKPLPSTSEILGENVLSSTQNAAKEPSNKYFASPTLRRRSIKNGNTVQTPKNDHDIAHVEKKTPGSVTEPLKTVSSVNKLRRSRELRHTLVESMNENTEAGLAKGITGRHLRKTSLQGQEVDQQMQDSENTSQRFKEIIELKEVTEKTSAKRSCAREKKPTKDSMGSQMTTQTAACAEELFNQEKGTIETPEESMRMQNIPMSDGRRDAKEKVDLVYETKVKCWSRTPDKKAQPLEGPAGLKEPFETPSCREKPMGDDKTKVFCKSPQPTPENTKTSTKPWPSTSGRRVDMKEEHSALNFVDVSGGTRYTPKVQEHRGIKALKESENQMLDLTVTGSKKPVRKVKEKTQPLENLDGFQELSLSPVPADKITKMPNKSPCVERIRTPASRKSLSKTGVGKVEVTEELSTSGKRTESPGRATRTPTAPALEESDSTDIMQTPKQKLVFTGNSTGRKRRSQAPKNGAQPLEDLDGFQELFQTPVGTRDPVTVRETTKLSLESAQAEPVRTPASRKSLSKTGVGKVEVTEELSTSGKRTKSPGRATRTPTAPALEESNSTDIMETPKQKLDFTTNSTGRKRRSQAPKNRVQSLEDLDGFQELFQTPVGTRDPVTVRETTKLSLESAQAEPVRTPASRKSLSKTGVGKVEVTEELSTSGKRTKSPGRATRTPTAPALEESNSTDIMETPKQKLDFTTNSTGRKRRSQAPKNRVQSLEDLDGFQELFQTPVGASDPVTVRKTTKLSLESVQAEPVRIPASRKSLSKTDLRKEDLREELSTLGKRTKSSGRATHTPTAPALEESDSTDIMQTPKQKLDFTENSTGRKRRSQAPKNRVQSLEDLDGFQELFQTPVGASDPVTVRKTTKLSLESAQAEPVRTPASRKRLSKTDLGKVDVTEEVSTLGKRTKSSGRATRTPTVLEESNSTDIMQTPNQKLVFTANSTGRKRRSQAPKNGAQPLEDLDGFQELFQTPVGAGDPVTVRETTKLSLESAQAEPVRTPASRKRLSKTDPGKVDVTEVSTLGKRTKSPGRAAHTSTAPVQQEKGIKAIMETSGQELKSVGNLRGPKKHPRTPKEEGQSLEDLFGLQELFQTPDHGNGLLAVGITKKKSINALQPETVIITQSLKRQSRACVGNIEVKEELSESEKHPQIEKAIDTLQGPDNNNVRASKQSGKRKLDSEASMPDSKRLRRASKDKTPRLEDLHGFQQLFQTPGHAKDSLSIGETSKIPTKSPQSGPVRRQSSRKSLPKMSLWKMNVTEDLSALWKQSPGKAPTSPVQQDNGIQAIVKTPKGKLETAANVTGLTRQRRAPKEKVLPLEDLDGFQELFQIPDHSTDPVIDNKRTSVSLKSPQPVLVRTTQTSERLAKTSLGKVGVREEISLNMPRCAAGESVHIPSLPEDDGRGKKDLKKSRTQTLGPSASVTRSKKQQGSHKERSQSPEDLFGLQELFQTPASQKDLMTVCETTKMSLESSEPEHIRTPASRKSLSKTGVGKVDVRKELSTSGKRTESPGRGTRTPTAPALEESDITDIMQTPKQKLDFTENSTGRKRRSQAPKNGAQPLEDLDGFQELFQTPAGASDPVTVRETTKLSLESAQAEPVRTPASRKRLSKTDLGKVDVTEEVSTLGKRTKSPGRTTRTPTVLEESDSTDIMQTPKQKLDFTENSTGRKRRSQAPKNRVQSLEDLDGFQELFQTPVGASDPVTVRETTELSLESVQAEPVRTPASRKRLSKTGVGKVEVTEELSTLGKRTKSPGRATRTPIAPALEESDSTDIIQTPKQKLDFTGNSIGRKRRSQAPKNGAQPLEDLDGFQELFQTPVGASDPVTVRETTKLSLESVQAEPVRTPASRKRLSKTDPGKVDVTEEVSTLGKRTKSPGRATCTPTASALEESDSIDIMETPKQKVDFTRSSRSRSSQATKNRAQSLEDLDGFQELFQTPVGASDPVNIGKTAKVSLESVQAEPVRTPVSTKRLSKTGLDKVDAREKHSLLSKPRCSSQEVMRVSRLSEDDGSGTKDLKESAAQALDPAISVTRSKRQRGACKKRSQSPEDLFGLQELFQTPGYEKDSVAGEKLTKMPHSSLPPEPTETSITSQRQPRTRLMKVHVKNELSGDRMLPQMSQEIMDISRVPEGEDKGISTRKQSVKRKLDTAVSVPSSKRQRVARAEKAQTLEGLPGFQELSQTPSSAVDSVTVDKTTKMLSKSPESMDTTSQTQPGRRLRRVGVTKEPIAQRKTTRVLRGTRNTPKEPVGDSKDVKEFKDSSQKQDPTVSLTGKRSQSRTLKEKTQPLEELPSIQEETATRYSCESPQPEEKESSVASERQLRIRLCKIDMKEEPTTQRKPPGRKTRNTPKEPVSDSGNVEELKESTKQKTDPAASVPASKRPRRVLREKAQPLELPGPKGPGHTEESANDERPTQIPCSSPQPEQVDSLPISPRRPRTRRGKVEVDEVPSLVRKAVPSSRQTSRSRKVPEIDDKDIQASKEPGKQKLETVTTVTASRRQLRGPKDGVQSLEVLGESKEITQMSEHTEKLRHDTNSLKSTLQQMPVPIKPLRTSRRVLRASKEDTTETTLEMVVDTRDSAESQSKSITFLPPKRKSARDGSIPRTRGLRSVTPKQEATDEKPAPKKQRTASSKRHVSPEPVKMKQLRIMSNKIEPVEEQISNITEEKEAQVENSAHPDQKTPLPSRYRKKTNEKQPRPEVGVSAEKVGIKKNEKTVKTSQETELQNTDDGAKKSTSRGKVSGKRICLRSGGQSEIPQPHAAEEKTSETGAEILVKTQKEKGISGDSDVRCLRSRKTGATLDSEPKPRVTRGAKKDTKVPKKDEDIVYTTKLRTRSHQNSKNV", "length": 3583, "header": "tr|A0A9J7JL39-1|A0A9J7JL39_CRIGR Isoform 1 of Proliferation marker protein Ki-67 isoform X4 OS=Cricetulus griseus OX=10029 GN=Mki67 PE=4 SV=1 CANONICAL=A0A9J7JL39-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FP85-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP85/entry", "sequence": { "sequence": "MASSARLVTIKRSGGDGAHFPLSLSSCLFGRSIECDIRIQLPVVSKKHCKIEVNKQQAILYNFSSTNPAQVNGATIDEPVQLKHGDIITIIDRSFRYENGNHEDGSGSTGFPEKSLGQEPARRASRASFSDDSDGKGQDAKSSKTTASRRSSVHDKKFLGDSSASDGSKDSVTQDLSNTCSSGHVEQHSGRNLGESTSSDLFKKSRATGSSYRELKSSPAHSLSNSKKNESPFEKLYQSMKEELDIKSQKPSRRKSEPQPECAAEKEMWETKLLVSCKSRAKSSGSTPETAPSSPKVGKVWTENQNSAVRPLQTSTEALSSSFSLAETAKTKTPVRTSQQLEDFHVSSRRESVNLDESEGAKAVHKIVTPRKSGTRNQTPVKVEYAASPADTPENLFSKKRRSIPAKVEVLSAETQNRSSSIQHLAPGEKKTPKEAFSKPEKLATAAEQICSGLPGLSSVDISNFGDSINKSEGMSLKRRRVSFGGRLRPELFDENLPPNTPLKRGETPIKRKSLAPHTPAVLKKIIKERPQSPGKLESPGVTPPTANDERRRSGRILPASDGSKSLHQTDTPKKAGRKSGNLPAKRASISRSQHDILQMICSKRRSGASEANLIVAKSWADVVKLGAKQTQTKVVKHVPQKQTSKRQRRPNTPKKPTSNLHNQFSTGHANSPCTIVIGRAQIEKVSMPARPYKMLNNLMLNRKMDFNEDLSGLTEMFKTPVKENQQQMNDKASILSNSGNLPEKQFEVTNSENKPLPSTSEILGENVLSSTQNAAKEPSNKYFASPTLRRRSIKNGNTVQTPKNDHDIAHVEKKTPGSVTEPLKTVSSVNKLRRSRELRHTLVESMNENTEAGLAKGITGRHLRKTSLQGQEVDQQMQDSENTSQRFKEIIELKEVTEKTSAKRSCAREKKPTKDSMGSQMTTQTAACAEELFNQEKGTIETPEESMRMQNIPMSDGRRDAKEKVDLVYETKVKCWSRTPDKKAQPLEGPAGLKEPFETPSCREKPMGDDKTKVFCKSPQPTPENTKTSTKPWPSTSGRRVDMKEEHSALNFVDVSGGTRYTPKVQEHRGIKALKESENQMLDLTVTGSKKPVRKVKEKTQPLENLDGFQELSLSPVPADKITKMPNKSPCVERIRTPASRKSLSKTGVGKVEVTEELSTSGKRTKSPGRATRTPTAPALEESNSTDIMETPKQKLDFTTNSTGRKRRSQAPKNRVQSLEDLDGFQELFQTPVGTRDPVTVRETTKLSLESAQAEPVRTPASRKSLSKTGVGKVEVTEELSTSGKRTKSPGRATRTPTAPALEESNSTDIMETPKQKLDFTTNSTGRKRRSQAPKNRVQSLEDLDGFQELFQTPVGASDPVTVRKTTKLSLESVQAEPVRIPASRKSLSKTDLRKEDLREELSTLGKRTKSSGRATHTPTAPALEESDSTDIMQTPKQKLDFTENSTGRKRRSQAPKNRVQSLEDLDGFQELFQTPVGASDPVTVRKTTKLSLESAQAEPVRTPASRKRLSKTDLGKVDVTEEVSTLGKRTKSSGRATRTPTVLEESNSTDIMQTPNQKLVFTANSTGRKRRSQAPKNGAQPLEDLDGFQELFQTPVGAGDPVTVRETTKLSLESAQAEPVRTPASRKRLSKTDPGKVDVTEVSTLGKRTKSPGRAAHTSTAPVQQEKGIKAIMETSGQELKSVGNLRGPKKHPRTPKEEGQSLEDLFGLQELFQTPDHGNGLLAVGITKKKSINALQPETVIITQSLKRQSRACVGNIEVKEELSESEKHPQIEKAIDTLQGPDNNNVRASKQSGKRKLDSEASMPDSKRLRRASKDKTPRLEDLHGFQQLFQTPGHAKDSLSIGETSKIPTKSPQSGPVRRQSSRKSLPKMSLWKMNVTEDLSALWKQSPGKAPTSPVQQDNGIQAIVKTPKGKLETAANVTGLTRQRRAPKEKVLPLEDLDGFQELFQIPDHSTDPVIDNKRTSVSLKSPQPVLVRTTQTSERLAKTSLGKVGVREEISLNMPRCAAGESVHIPSLPEDDGRGKKDLKKSRTQTLGPSASVTRSKKQQGSHKERSQSPEDLFGLQELFQTPASQKDLMTVCETTKMSLESSEPEHIRTPASRKSLSKTGVGKVDVRKELSTSGKRTESPGRGTRTPTAPALEESDITDIMQTPKQKLDFTENSTGRKRRSQAPKNGAQPLEDLDGFQELFQTPAGASDPVTVRETTKLSLESAQAEPVRTPASRKRLSKTDLGKVDVTEEVSTLGKRTKSPGRTTRTPTVLEESDSTDIMQTPKQKLDFTENSTGRKRRSQAPKNRVQSLEDLDGFQELFQTPVGASDPVTVRETTELSLESVQAEPVRTPASRKRLSKTGVGKVEVTEELSTLGKRTKSPGRATRTPIAPALEESDSTDIIQTPKQKLDFTGNSIGRKRRSQAPKNGAQPLEDLDGFQELFQTPVGASDPVTVRETTKLSLESVQAEPVRTPASRKRLSKTDPGKVDVTEEVSTLGKRTKSPGRATCTPTASALEESDSIDIMETPKQKVDFTRSSRSRSSQATKNRAQSLEDLDGFQELFQTPVGASDPVNIGKTAKVSLESVQAEPVRTPVSTKRLSKTGLDKVDAREKHSLLSKPRCSSQEVMRVSRLSEDDGSGTKDLKESAAQALDPAISVTRSKRQRGACKKRSQSPEDLFGLQELFQTPGYEKDSVAGEKLTKMPHSSLPPEPTETSITSQRQPRTRLMKVHVKNELSGDRMLPQMSQEIMDISRVPEGEDKGISTRKQSVKRKLDTAVSVPSSKRQRVARAEKAQTLEGLPGFQELSQTPSSAVDSVTVDKTTKMLSKSPESMDTTSQTQPGRRLRRVGVTKEPIAQRKTTRVLRGTRNTPKEPVGDSKDVKEFKDSSQKQDPTVSLTGKRSQSRTLKEKTQPLEELPSIQEETATRYSCESPQPEEKESSVASERQLRIRLCKIDMKEEPTTQRKPPGRKTRNTPKEPVSDSGNVEELKESTKQKTDPAASVPASKRPRRVLREKAQPLELPGPKGPGHTEESANDERPTQIPCSSPQPEQVDSLPISPRRPRTRRGKVEVDEVPSLVRKAVPSSRQTSRSRKVPEIDDKDIQASKEPGKQKLETVTTVTASRRQLRGPKDGVQSLEVLGESKEITQMSEHTEKLRHDTNSLKSTLQQMPVPIKPLRTSRRVLRASKEDTTETTLEMVVDTRDSAESQSKSITFLPPKRKSARDGSIPRTRGLRSVTPKQEATDEKPAPKKQRTASSKRHVSPEPVKMKQLRIMSNKIEPVEEQISNITEEKEAQVENSAHPDQKTPLPSRYRKKTNEKQPRPEVGVSAEKVGIKKNEKTVKTSQETELQNTDDGAKKSTSRGKVSGKRICLRSGGQSEIPQPHAAEEKTSETGAEILVKTQKEKGISGDSDVRCLRSRKTGATLDSEPKPRVTRGAKKDTKVPKKDEDIVYTTKLRTRSHQNSKNV", "length": 3461, "header": "tr|A0A9J7FP85-1|A0A9J7JL39_CRIGR Computationally mapped isoform of Proliferation marker protein Ki-67 isoform X4 OS=Cricetulus griseus OX=10029 GN=Mki67 PE=4 SV=1 CANONICAL=A0A9J7JL39-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JKF6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKF6/entry", "sequence": { "sequence": "MASSARLVTIKRSGGDGAHFPLSLSSCLFGRSIECDIRIQLPVVSKKHCKIEVNKQQAILYNFSSTNPAQVNGATIDEPVQLKHGDIITIIDRSFRYENGNHEDGSGSTGFPEKSLGQEPARRASRASFSDDSDGKGQDAKSSKTTASRRSSVHDKKFLGDSSASDGSKDSVTQDLSNTCSSGHVEQHSGRNLGESTSSDLFKKSRATGSSYRELKSSPAHSLSNSKKNESPFEKLYQSMKEELDIKSQKPSRRKSEPQPECAAEKEMWETKLLVSCKSRAKSSGSTPETAPSSPKVGKVWTENQNSAVRPLQTSTEALSSSFSLAETAKTKTPVRTSQQLEDFHVSSRRESVNLDESEGAKAVHKIVTPRKSGTRNQTPVKVEYAASPADTPENLFSKKRRSIPAKVEVLSAETQNRSSSIQHLAPDKSEGMSLKRRRVSFGGRLRPELFDENLPPNTPLKRGETPIKRKSLAPHTPAVLKKIIKERPQSPGKLESPGVTPPTANDERRRSGRILPASDGSKSLHQTDTPKKAGRKSGNLPAKRASISRSQHDILQMICSKRRSGASEANLIVAKSWADVVKLGAKQTQTKVVKHVPQKQTSKRQRRPNTPKKPTSNLHNQFSTGHANSPCTIVIGRAQIEKVSMPARPYKMLNNLMLNRKMDFNEDLSGLTEMFKTPVKENQQQMNDKASILSNSGNLPEKQFEVTNSENKPLPSTSEILGENVLSSTQNAAKEPSNKYFASPTLRRRSIKNGNTVQTPKNDHDIAHVEKKTPGSVTEPLKTVSSVNKLRRSRELRHTLVESMNENTEAGLAKGITGRHLRKTSLQGQEVDQQMQDSENTSQRFKEIIELKEVTEKTSAKRSCAREKKPTKDSMGSQMTTQTAACAEELFNQEKGTIETPEESMRMQNIPMSDGRRDAKEKVDLVYETKVKCWSRTPDKKAQPLEGPAGLKEPFETPSCREKPMGDDKTKVFCKSPQPTPENTKTSTKPWPSTSGRRVDMKEEHSALNFVDVSGGTRYTPKVQEHRGIKALKESENQMLDLTVTGSKKPVRKVKEKTQPLENLDGFQELSLSPVPADKITKMPNKSPCVERIRTPASRKSLSKTGVGKVEVTEELSTSGKRTESPGRATRTPTAPALEESDSTDIMQTPKQKLVFTGNSTGRKRRSQAPKNGAQPLEDLDGFQELFQTPVGTRDPVTVRETTKLSLESAQAEPVRTPASRKSLSKTGVGKVEVTEELSTSGKRTKSPGRATRTPTAPALEESNSTDIMETPKQKLDFTTNSTGRKRRSQAPKNRVQSLEDLDGFQELFQTPVGTRDPVTVRETTKLSLESAQAEPVRTPASRKSLSKTGVGKVEVTEELSTSGKRTKSPGRATRTPTAPALEESNSTDIMETPKQKLDFTTNSTGRKRRSQAPKNRVQSLEDLDGFQELFQTPVGASDPVTVRKTTKLSLESVQAEPVRIPASRKSLSKTDLRKEDLREELSTLGKRTKSSGRATHTPTAPALEESDSTDIMQTPKQKLDFTENSTGRKRRSQAPKNRVQSLEDLDGFQELFQTPVGASDPVTVRKTTKLSLESAQAEPVRTPASRKRLSKTDLGKVDVTEEVSTLGKRTKSSGRATRTPTVLEESNSTDIMQTPNQKLVFTANSTGRKRRSQAPKNGAQPLEDLDGFQELFQTPVGAGDPVTVRETTKLSLESAQAEPVRTPASRKRLSKTDPGKVDVTEVSTLGKRTKSPGRAAHTSTAPVQQEKGIKAIMETSGQELKSVGNLRGPKKHPRTPKEEGQSLEDLFGLQELFQTPDHGNGLLAVGITKKKSINALQPETVIITQSLKRQSRACVGNIEVKEELSESEKHPQIEKAIDTLQGPDNNNVRASKQSGKRKLDSEASMPDSKRLRRASKDKTPRLEDLHGFQQLFQTPGHAKDSLSIGETSKIPTKSPQSGPVRRQSSRKSLPKMSLWKMNVTEDLSALWKQSPGKAPTSPVQQDNGIQAIVKTPKGKLETAANVTGLTRQRRAPKEKVLPLEDLDGFQELFQIPDHSTDPVIDNKRTSVSLKSPQPVLVRTTQTSERLAKTSLGKVGVREEISLNMPRCAAGESVHIPSLPEDDGRGKKDLKKSRTQTLGPSASVTRSKKQQGSHKERSQSPEDLFGLQELFQTPASQKDLMTVCETTKMSLESSEPEHIRTPASRKSLSKTGVGKVDVRKELSTSGKRTESPGRGTRTPTAPALEESDITDIMQTPKQKLDFTENSTGRKRRSQAPKNGAQPLEDLDGFQELFQTPAGASDPVTVRETTKLSLESAQAEPVRTPASRKRLSKTDLGKVDVTEEVSTLGKRTKSPGRTTRTPTVLEESDSTDIMQTPKQKLDFTENSTGRKRRSQAPKNRVQSLEDLDGFQELFQTPVGASDPVTVRETTELSLESVQAEPVRTPASRKRLSKTGVGKVEVTEELSTLGKRTKSPGRATRTPIAPALEESDSTDIIQTPKQKLDFTGNSIGRKRRSQAPKNGAQPLEDLDGFQELFQTPVGASDPVTVRETTKLSLESVQAEPVRTPASRKRLSKTDPGKVDVTEEVSTLGKRTKSPGRATCTPTASALEESDSIDIMETPKQKVDFTRSSRSRSSQATKNRAQSLEDLDGFQELFQTPVGASDPVNIGKTAKVSLESVQAEPVRTPVSTKRLSKTGLDKVDAREKHSLLSKPRCSSQEVMRVSRLSEDDGSGTKDLKESAAQALDPAISVTRSKRQRGACKKRSQSPEDLFGLQELFQTPGYEKDSVAGEKLTKMPHSSLPPEPTETSITSQRQPRTRLMKVHVKNELSGDRMLPQMSQEIMDISRVPEGEDKGISTRKQSVKRKLDTAVSVPSSKRQRVARAEKAQTLEGLPGFQELSQTPSSAVDSVTVDKTTKMLSKSPESMDTTSQTQPGRRLRRVGVTKEPIAQRKTTRVLRGTRNTPKEPVGDSKDVKEFKDSSQKQDPTVSLTGKRSQSRTLKEKTQPLEELPSIQEETATRYSCESPQPEEKESSVASERQLRIRLCKIDMKEEPTTQRKPPGRKTRNTPKEPVSDSGNVEELKESTKQKTDPAASVPASKRPRRVLREKAQPLELPGPKGPGHTEESANDERPTQIPCSSPQPEQVDSLPISPRRPRTRRGKVEVDEVPSLVRKAVPSSRQTSRSRKVPEIDDKDIQASKEPGKQKLETVTTVTASRRQLRGPKDGVQSLEVLGESKEITQMSEHTEKLRHDTNSLKSTLQQMPVPIKPLRTSRRVLRASKEDTTETTLEMVVDTRDSAESQSKSITFLPPKRKSARDGSIPRTRGLRSVTPKQEATDEKPAPKKQRTASSKRHVSPEPVKMKQLRIMSNKIEPVEEQISNITEEKEAQVENSAHPDQKTPLPSRYRKKTNEKQPRPEVGVSAEKVGIKKNEKTVKTSQETELQNTDDGAKKSTSRGKVSGKRICLRSGGQSEIPQPHAAEEKTSETGAEILVKTQKEKGISGDSDVRCLRSRKTGATLDSEPKPRVTRGAKKDTKVPKKDEDIVYTTKLRTRSHQNSKNV", "length": 3541, "header": "tr|A0A9J7JKF6-1|A0A9J7JKF6_CRIGR Computationally mapped isoform of Proliferation marker protein Ki-67 isoform X5 OS=Cricetulus griseus OX=10029 GN=Mki67 PE=4 SV=1 CANONICAL=A0A9J7JL39-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JL39-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JL39/entry", "sequence": { "sequence": "MASSARLVTIKRSGGDGAHFPLSLSSCLFGRSIECDIRIQLPVVSKKHCKIEVNKQQAILYNFSSTNPAQVNGATIDEPVQLKHGDIITIIDRSFRYENGNHEDGSGSTGFPEKSLGQEPARRASRASFSDDSDGKGQDAKSSKTTASRRSSVHDKKFLGDSSASDGSKDSVTQDLSNTCSSGHVEQHSGRNLGESTSSDLFKKSRATGSSYRELKSSPAHSLSNSKKNESPFEKLYQSMKEELDIKSQKPSRRKSEPQPECAAEKEMWETKLLVSCKSRAKSSGSTPETAPSSPKVGKVWTENQNSAVRPLQTSTEALSSSFSLAETAKTKTPVRTSQQLEDFHVSSRRESVNLDESEGAKAVHKIVTPRKSGTRNQTPVKVEYAASPADTPENLFSKKRRSIPAKVEVLSAETQNRSSSIQHLAPGEKKTPKEAFSKPEKLATAAEQICSGLPGLSSVDISNFGDSINKSEGMSLKRRRVSFGGRLRPELFDENLPPNTPLKRGETPIKRKSLAPHTPAVLKKIIKERPQSPGKLESPGVTPPTANDERRRSGRILPASDGSKSLHQTDTPKKAGRKSGNLPAKRASISRSQHDILQMICSKRRSGASEANLIVAKSWADVVKLGAKQTQTKVVKHVPQKQTSKRQRRPNTPKKPTSNLHNQFSTGHANSPCTIVIGRAQIEKVSMPARPYKMLNNLMLNRKMDFNEDLSGLTEMFKTPVKENQQQMNDKASILSNSGNLPEKQFEVTNSENKPLPSTSEILGENVLSSTQNAAKEPSNKYFASPTLRRRSIKNGNTVQTPKNDHDIAHVEKKTPGSVTEPLKTVSSVNKLRRSRELRHTLVESMNENTEAGLAKGITGRHLRKTSLQGQEVDQQMQDSENTSQRFKEIIELKEVTEKTSAKRSCAREKKPTKDSMGSQMTTQTAACAEELFNQEKGTIETPEESMRMQNIPMSDGRRDAKEKVDLVYETKVKCWSRTPDKKAQPLEGPAGLKEPFETPSCREKPMGDDKTKVFCKSPQPTPENTKTSTKPWPSTSGRRVDMKEEHSALNFVDVSGGTRYTPKVQEHRGIKALKESENQMLDLTVTGSKKPVRKVKEKTQPLENLDGFQELSLSPVPADKITKMPNKSPCVERIRTPASRKSLSKTGVGKVEVTEELSTSGKRTESPGRATRTPTAPALEESDSTDIMQTPKQKLVFTGNSTGRKRRSQAPKNGAQPLEDLDGFQELFQTPVGTRDPVTVRETTKLSLESAQAEPVRTPASRKSLSKTGVGKVEVTEELSTSGKRTKSPGRATRTPTAPALEESNSTDIMETPKQKLDFTTNSTGRKRRSQAPKNRVQSLEDLDGFQELFQTPVGTRDPVTVRETTKLSLESAQAEPVRTPASRKSLSKTGVGKVEVTEELSTSGKRTKSPGRATRTPTAPALEESNSTDIMETPKQKLDFTTNSTGRKRRSQAPKNRVQSLEDLDGFQELFQTPVGASDPVTVRKTTKLSLESVQAEPVRIPASRKSLSKTDLRKEDLREELSTLGKRTKSSGRATHTPTAPALEESDSTDIMQTPKQKLDFTENSTGRKRRSQAPKNRVQSLEDLDGFQELFQTPVGASDPVTVRKTTKLSLESAQAEPVRTPASRKRLSKTDLGKVDVTEEVSTLGKRTKSSGRATRTPTVLEESNSTDIMQTPNQKLVFTANSTGRKRRSQAPKNGAQPLEDLDGFQELFQTPVGAGDPVTVRETTKLSLESAQAEPVRTPASRKRLSKTDPGKVDVTEVSTLGKRTKSPGRAAHTSTAPVQQEKGIKAIMETSGQELKSVGNLRGPKKHPRTPKEEGQSLEDLFGLQELFQTPDHGNGLLAVGITKKKSINALQPETVIITQSLKRQSRACVGNIEVKEELSESEKHPQIEKAIDTLQGPDNNNVRASKQSGKRKLDSEASMPDSKRLRRASKDKTPRLEDLHGFQQLFQTPGHAKDSLSIGETSKIPTKSPQSGPVRRQSSRKSLPKMSLWKMNVTEDLSALWKQSPGKAPTSPVQQDNGIQAIVKTPKGKLETAANVTGLTRQRRAPKEKVLPLEDLDGFQELFQIPDHSTDPVIDNKRTSVSLKSPQPVLVRTTQTSERLAKTSLGKVGVREEISLNMPRCAAGESVHIPSLPEDDGRGKKDLKKSRTQTLGPSASVTRSKKQQGSHKERSQSPEDLFGLQELFQTPASQKDLMTVCETTKMSLESSEPEHIRTPASRKSLSKTGVGKVDVRKELSTSGKRTESPGRGTRTPTAPALEESDITDIMQTPKQKLDFTENSTGRKRRSQAPKNGAQPLEDLDGFQELFQTPAGASDPVTVRETTKLSLESAQAEPVRTPASRKRLSKTDLGKVDVTEEVSTLGKRTKSPGRTTRTPTVLEESDSTDIMQTPKQKLDFTENSTGRKRRSQAPKNRVQSLEDLDGFQELFQTPVGASDPVTVRETTELSLESVQAEPVRTPASRKRLSKTGVGKVEVTEELSTLGKRTKSPGRATRTPIAPALEESDSTDIIQTPKQKLDFTGNSIGRKRRSQAPKNGAQPLEDLDGFQELFQTPVGASDPVTVRETTKLSLESVQAEPVRTPASRKRLSKTDPGKVDVTEEVSTLGKRTKSPGRATCTPTASALEESDSIDIMETPKQKVDFTRSSRSRSSQATKNRAQSLEDLDGFQELFQTPVGASDPVNIGKTAKVSLESVQAEPVRTPVSTKRLSKTGLDKVDAREKHSLLSKPRCSSQEVMRVSRLSEDDGSGTKDLKESAAQALDPAISVTRSKRQRGACKKRSQSPEDLFGLQELFQTPGYEKDSVAGEKLTKMPHSSLPPEPTETSITSQRQPRTRLMKVHVKNELSGDRMLPQMSQEIMDISRVPEGEDKGISTRKQSVKRKLDTAVSVPSSKRQRVARAEKAQTLEGLPGFQELSQTPSSAVDSVTVDKTTKMLSKSPESMDTTSQTQPGRRLRRVGVTKEPIAQRKTTRVLRGTRNTPKEPVGDSKDVKEFKDSSQKQDPTVSLTGKRSQSRTLKEKTQPLEELPSIQEETATRYSCESPQPEEKESSVASERQLRIRLCKIDMKEEPTTQRKPPGRKTRNTPKEPVSDSGNVEELKESTKQKTDPAASVPASKRPRRVLREKAQPLELPGPKGPGHTEESANDERPTQIPCSSPQPEQVDSLPISPRRPRTRRGKVEVDEVPSLVRKAVPSSRQTSRSRKVPEIDDKDIQASKEPGKQKLETVTTVTASRRQLRGPKDGVQSLEVLGESKEITQMSEHTEKLRHDTNSLKSTLQQMPVPIKPLRTSRRVLRASKEDTTETTLEMVVDTRDSAESQSKSITFLPPKRKSARDGSIPRTRGLRSVTPKQEATDEKPAPKKQRTASSKRHVSPEPVKMKQLRIMSNKIEPVEEQISNITEEKEAQVENSAHPDQKTPLPSRYRKKTNEKQPRPEVGVSAEKVGIKKNEKTVKTSQETELQNTDDGAKKSTSRGKVSGKRICLRSGGQSEIPQPHAAEEKTSETGAEILVKTQKEKGISGDSDVRCLRSRKTGATLDSEPKPRVTRGAKKDTKVPKKDEDIVYTTKLRTRSHQNSKNV", "length": 3583, "header": "tr|A0A9J7JL39-1|A0A9J7JL39_CRIGR Isoform 1 of Proliferation marker protein Ki-67 isoform X4 OS=Cricetulus griseus OX=10029 GN=Mki67 PE=4 SV=1 CANONICAL=A0A9J7JL39-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1023, "start_aa": "Thr", "end_pos": 1023, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1023", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 543, "start_aa": "Thr", "end_pos": 543, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr543", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FP85", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP85" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FP85", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP85" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100756884", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756884", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JL39", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JL39" } ], "pmid": "" }, { "name": "chromosome", "id": "GO:0005694", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005694", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JL39", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JL39" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "regulation of mitotic nuclear division", "id": "GO:0007088", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007088", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JL39", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JL39" } ], "pmid": "" }, { "name": "regulation of chromosome segregation", "id": "GO:0051983", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051983", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JL39", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JL39" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1128, "end_pos": 1130, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1202, "end_pos": 1204, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1307, "end_pos": 1309, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1324, "end_pos": 1326, "annotation": 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"MKRGVPRTPSRKRKLGGRDKGRRDAWAVNSFLLTAWFPYVWAVLKLRKMVRSGSRPGQVISSGKCLGSKLTHGKKGTHPRNIAHLNAVPTCPVYSDSESQPEIVQGLDGCTSLLRDILKNEDPGPEIVYSENRCNARPLESKNCRAKKKGPGKHAPPVVRKEILSSENKKWISNEASTGNEKDKSDIAQHWSLQDHYRMYSPIIYQALCEHVQTQMSLMNALTSKNAPNGMPTACHTVSGLESHATPPSGYGCYTSTSVWSPQQPSCPLMVHSEVQTDSDNLLGSQDQTSSVNLPDVPRNSVSVHPGILCGLSHIDKAAVPTPQQLSLANWILPQQRAPKAADLLKCFQTHMSLPAHGKDALSDSQAHQSPTQLQPAFLATNEEKRAREQIGSATSEGKYLSMHVQDAKIAKNVQQAENVSHTAEKVRIAKCLLGELKALVAEQEDSEVERLITEVEACISGLSAVSGHTNIEVEIALALQPLRSENAQLRRQLRILNQRFREEKTPKTPGNLELLSLQSLNVSLQNQLQESLKSQELLQSKNEELLKVIENQRDENKKFTTMFKDKEQTLLQNKQQFDIEMTRVKIELEEALANEKNFRFKLETAEKENQILGITLRQRDAEVARLRELTRTLQSSMAKLLSDLSMDASRSKLGSNLTKSLLNIYDQQLHQDPTPLHTSIMSYLNKLETNHSFAHSELLTNEEATEPPRLCEKVLPSQGPPHSDTRAVGGGFAPGMASAALVEDSDTECETIALIEDECNVDNTLYIPFARSTSKKHSPLSERLSPQPMRSVATTQLASGNALASKREHSPCAPLVCSSRNEAEDAPGNLSRASDTEDMQLLRRIKEAIDKIPASAGDAAGAAGAAGAAGAAGAGTEHPKEQATHHGPSACQSSGVPVTGNIVSDVSFLNSDLMSDWSISSFSTFTSHDEQDFRNGLAALDANIARLQKSLRTGLLEK", "length": 959, "header": "tr|A0A9J7JKZ8-1|A0A9J7JKZ8_CRIGR Isoform 1 of Coiled-coil domain-containing protein 14 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ccdc14 PE=4 SV=1 CANONICAL=A0A9J7JKZ8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FUM8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUM8/entry", "sequence": { "sequence": "MYSPIIYQALCEHVQTQMSLMNALTSKNAPNGMPTACHTVSGLESHATPPSGYGCYTSTSVWSPQQPSCPLMVHSEVQTDSDNLLGSQDQTSSVNLPDVPRNSVSVHPGILCGLSHIDKAAVPTPQQLSLANWILPQQRAPKAADLLKCFQTHMSLPAHGKDALSDSQAHQSPTQLQPAFLATNEEKRAREQIGSATSEGKYLSMHVQDAKIAKNVQQAENVSHTAEKVRIAKCLLGELKALVAEQEDSEVERLITEVEACISGLSAVSGHTNIEVEIALALQPLRSENAQLRRQLRILNQRFREEKTPKTPGNLELLSLQSLNVSLQNQLQESLKSQELLQSKNEELLKVIENQRDENKKFTTMFKDKEQTLLQNKQQFDIEMTRVKIELEEALANEKNFRFKLETAEKENQILGITLRQRDAEVARLRELTRTLQSSMAKLLSDLSMDASRSKLGSNLTKSLLNIYDQQLHQDPTPLHTSIMSYLNKLETNHSFAHSELLTNEEATEPPRLCEKVLPSQGPPHSDTRAVGGGFAPGMASAALVEDSDTECETIALIEDECNVDNTLYIPFARSTSKKHSPLSERLSPQPMRSVATTQLASGNALASKREHSPCAPLVCSSRNEAEDAPGNLSRASDTEDMQLLRRIKEAIDKIPASAGDAAGAAGAAGAAGAAGAGTEHPKEQATHHGPSACQSSGVPVTGNIVSDVSFLNSDLMSDWSISSFSTFTSHDEQDFRNGLAALDANIARLQKSLRTGLLEK", "length": 761, "header": "tr|A0A9J7FUM8-1|A0A9J7JKZ8_CRIGR Computationally mapped isoform of Coiled-coil domain-containing protein 14 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ccdc14 PE=4 SV=1 CANONICAL=A0A9J7JKZ8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JKZ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKZ8/entry", "sequence": { "sequence": "MKRGVPRTPSRKRKLGGRDKGRRDAWAVNSFLLTAWFPYVWAVLKLRKMVRSGSRPGQVISSGKCLGSKLTHGKKGTHPRNIAHLNAVPTCPVYSDSESQPEIVQGLDGCTSLLRDILKNEDPGPEIVYSENRCNARPLESKNCRAKKKGPGKHAPPVVRKEILSSENKKWISNEASTGNEKDKSDIAQHWSLQDHYRMYSPIIYQALCEHVQTQMSLMNALTSKNAPNGMPTACHTVSGLESHATPPSGYGCYTSTSVWSPQQPSCPLMVHSEVQTDSDNLLGSQDQTSSVNLPDVPRNSVSVHPGILCGLSHIDKAAVPTPQQLSLANWILPQQRAPKAADLLKCFQTHMSLPAHGKDALSDSQAHQSPTQLQPAFLATNEEKRAREQIGSATSEGKYLSMHVQDAKIAKNVQQAENVSHTAEKVRIAKCLLGELKALVAEQEDSEVERLITEVEACISGLSAVSGHTNIEVEIALALQPLRSENAQLRRQLRILNQRFREEKTPKTPGNLELLSLQSLNVSLQNQLQESLKSQELLQSKNEELLKVIENQRDENKKFTTMFKDKEQTLLQNKQQFDIEMTRVKIELEEALANEKNFRFKLETAEKENQILGITLRQRDAEVARLRELTRTLQSSMAKLLSDLSMDASRSKLGSNLTKSLLNIYDQQLHQDPTPLHTSIMSYLNKLETNHSFAHSELLTNEEATEPPRLCEKVLPSQGPPHSDTRAVGGGFAPGMASAALVEDSDTECETIALIEDECNVDNTLYIPFARSTSKKHSPLSERLSPQPMRSVATTQLASGNALASKREHSPCAPLVCSSRNEAEDAPGNLSRASDTEDMQLLRRIKEAIDKIPASAGDAAGAAGAAGAAGAAGAGTEHPKEQATHHGPSACQSSGVPVTGNIVSDVSFLNSDLMSDWSISSFSTFTSHDEQDFRNGLAALDANIARLQKSLRTGLLEK", "length": 959, "header": "tr|A0A9J7JKZ8-1|A0A9J7JKZ8_CRIGR Isoform 1 of Coiled-coil domain-containing protein 14 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ccdc14 PE=4 SV=1 CANONICAL=A0A9J7JKZ8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FUM8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUM8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FUM8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUM8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100757937", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757937", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "centriolar satellite", "id": "GO:0034451", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034451", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKZ8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKZ8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein localization to centrosome", "id": "GO:0071539", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071539", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKZ8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKZ8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 419, "end_pos": 421, "annotation": "n_glycosylation_sequon" }, { "start_pos": 522, "end_pos": 524, "annotation": "n_glycosylation_sequon" }, { "start_pos": 657, "end_pos": 659, "annotation": "n_glycosylation_sequon" }, { "start_pos": 691, "end_pos": 693, "annotation": "n_glycosylation_sequon" }, { "start_pos": 830, "end_pos": 832, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { 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}, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JNQ7-1", "uniprot_ac": "A0A9J7JNQ7", "uniprot_id": "A0A9J7JNQ7_CRIGR", "mass": { "chemical_mass": 45594.0, "monoisotopic_mass": 45594.0 }, "refseq": { "ac": "XP_027269807", "name": "transmembrane protein 120B isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269807" }, "gene_names": [ { "name": "Tmem120b", "type": "recommended", "evidence": [ { "id": "A0A9J7JNQ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNQ7" } ] }, { "name": "Tmem120b", "type": "synonym", "evidence": [ { "id": "XP_027269807", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269807" } ] } ], "protein_names": [ { "name": "Transmembrane protein 120B isoform X4", "type": "synonym", "evidence": [ { "id": "A0A9J7JNQ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNQ7/entry#names_and_taxonomy" } ] }, { "name": "transmembrane protein 120B isoform X4", "type": "synonym", "evidence": [ { "id": "XP_027269807", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269807" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027269807", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269807" } ] }, { "annotation": "Necessary for efficient adipogenesis. Does not show ion channel activity.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FW12", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW12#function" }, { "database": "UniProtKB", "id": "ARBA00045162", "url": "https://www.uniprot.org/uniprotkb/ARBA00045162#function" }, { "database": "UniProtKB", "id": "A0A9J7JNQ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNQ7#function" }, { "database": "UniProtKB", "id": "A0A9J7K7N7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7N7#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JNQ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNQ7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tmem120b", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNQ7", "locus": {} } ], "crossref": [ { "id": "A0A9J7JNQ7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JNQ7", "database": "AlphaFoldDB", "categories": [] }, { "id": "100767646", "url": "https://www.ncbi.nlm.nih.gov/gene/100767646", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR012926", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012926", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100767646", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767646", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FW12", "url": "https://www.orthodb.org/?gene=A0A9J7FW12", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JNQ7", "url": "https://www.orthodb.org/?gene=A0A9J7JNQ7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21433", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21433", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21433:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21433:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07851", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07851", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027269807", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269807", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FW12", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW12", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FW12-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW12-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JNQ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNQ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JNQ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNQ7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K7N7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7N7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K7N7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7N7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRAWLRLRLRRNSWYLGRRRVSWRAWGAGGLSGHAAGAAAALHHCTMSEQLERCEREWHELEGEFQELQETHRIYKQKLEELTALQTQCSTSISKQKRHLRDLKHTLQRYKRHSSQEEAELIQQIGANIKERQNVFFDMEAYLPKKNGLYLNLVLGNVNVTLLSNQAKFAYKDEYEKFKLYLTIILLLGAVACRFVLHYRVTDEVFNFLLVWYYCTLTIRESILISNGSRIKGWWVSHHYVSTFLSGVMLTWPNGLIYQKFRNQFLAFSIFQSCVQFLQYYYQRGCLYRLRALGERNHLDLTVEGFQSWMWRGLTFLLPFLFCGHFWQLYNAVTLFELSSHEECKEWQVFVLALTFLILFLGNFLTTLKVVHAKLQKNGNKTKQP", "length": 385, "header": "tr|A0A9J7JNQ7-1|A0A9J7JNQ7_CRIGR Isoform 1 of Transmembrane protein 120B isoform X4 OS=Cricetulus griseus OX=10029 GN=Tmem120b PE=3 SV=1 CANONICAL=A0A9J7JNQ7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FW12-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW12/entry", "sequence": { "sequence": "MNAETHRIYKQKLEELTALQTQCSTSISKQKRHLRDLKHTLQRYKRHSSQEEAELIQQIGANIKERQNVFFDMEAYLPKKNGLYLNLVLGNVNVTLLSNQAKFAYKDEYEKFKLYLTIILLLGAVACRFVLHYRVTDEVFNFLLVWYYCTLTIRESILISNGSRIKGWWVSHHYVSTFLSGVMLTWPNGLIYQKFRNQFLAFSIFQSCVQFLQYYYQRGCLYRLRALGERNHLDLTVEGFQSWMWRGLTFLLPFLFCGHFWQLYNAVTLFELSSHEECKEWQVFVLALTFLILFLGNFLTTLKVVHAKLQKNGNKTKQP", "length": 319, "header": "tr|A0A9J7FW12-1|A0A9J7JNQ7_CRIGR Computationally mapped isoform of Transmembrane protein 120B isoform X4 OS=Cricetulus griseus OX=10029 GN=Tmem120b PE=3 SV=1 CANONICAL=A0A9J7JNQ7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JNQ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNQ7/entry", "sequence": { "sequence": "MRAWLRLRLRRNSWYLGRRRVSWRAWGAGGLSGHAAGAAAALHHCTMSEQLERCEREWHELEGEFQELQETHRIYKQKLEELTALQTQCSTSISKQKRHLRDLKHTLQRYKRHSSQEEAELIQQIGANIKERQNVFFDMEAYLPKKNGLYLNLVLGNVNVTLLSNQAKFAYKDEYEKFKLYLTIILLLGAVACRFVLHYRVTDEVFNFLLVWYYCTLTIRESILISNGSRIKGWWVSHHYVSTFLSGVMLTWPNGLIYQKFRNQFLAFSIFQSCVQFLQYYYQRGCLYRLRALGERNHLDLTVEGFQSWMWRGLTFLLPFLFCGHFWQLYNAVTLFELSSHEECKEWQVFVLALTFLILFLGNFLTTLKVVHAKLQKNGNKTKQP", "length": 385, "header": "tr|A0A9J7JNQ7-1|A0A9J7JNQ7_CRIGR Isoform 1 of Transmembrane protein 120B isoform X4 OS=Cricetulus griseus OX=10029 GN=Tmem120b PE=3 SV=1 CANONICAL=A0A9J7JNQ7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K7N7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7N7/entry", "sequence": { "sequence": "MAGICQLTAGYSPSNRGLHPTLTLWLRAFHLETHRIYKQKLEELTALQTQCSTSISKQKRHLRDLKHTLQRYKRHSSQEEAELIQQIGANIKERQNVFFDMEAYLPKKNGLYLNLVLGNVNVTLLSNQAKFAYKDEYEKFKLYLTIILLLGAVACRFVLHYRVTDEVFNFLLVWYYCTLTIRESILISNGSRIKGWWVSHHYVSTFLSGVMLTWPNGLIYQKFRNQFLAFSIFQSCVQFLQYYYQRGCLYRLRALGERNHLDLTVEGFQSWMWRGLTFLLPFLFCGHFWQLYNAVTLFELSSHEECKEWQVFVLALTFLILFLGNFLTTLKVVHAKLQKNGNKTKQP", "length": 347, "header": "tr|A0A9J7K7N7-1|A0A9J7K7N7_CRIGR Computationally mapped isoform of Transmembrane protein 120B isoform X1 OS=Cricetulus griseus OX=10029 GN=Tmem120b PE=3 SV=1 CANONICAL=A0A9J7JNQ7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FW12", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW12" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FW12", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FW12" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100767646", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767646", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "fat cell differentiation", "id": "GO:0045444", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045444", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JNQ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNQ7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nuclear inner membrane", "id": "GO:0005637", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005637", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JNQ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNQ7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 159, "end_pos": 161, "annotation": "n_glycosylation_sequon" }, { "start_pos": 227, "end_pos": 229, "annotation": "n_glycosylation_sequon" }, { "start_pos": 380, "end_pos": 382, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 159, "end_pos": 161 }, { "start_pos": 227, "end_pos": 229 }, { "start_pos": 380, "end_pos": 382 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JPN2-1", "uniprot_ac": "A0A9J7JPN2", "uniprot_id": "A0A9J7JPN2_CRIGR", "mass": { "chemical_mass": 66691.0, "monoisotopic_mass": 66691.0 }, "refseq": { "ac": "XP_027268878", "name": "rho GTPase-activating protein 20 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268878" }, "gene_names": [ { "name": "LOC103163260", "type": "recommended", "evidence": [ { "id": "A0A9J7JPN2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPN2" } ] }, { "name": "LOC103163260", "type": "synonym", "evidence": [ { "id": "XP_027268878", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268878" } ] } ], "protein_names": [ { "name": "Rho GTPase-activating protein 20 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7JPN2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPN2/entry#names_and_taxonomy" } ] }, { "name": "rho GTPase-activating protein 20 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027268878", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268878" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027268878", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268878" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JPN2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPN2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC103163260", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPN2", "locus": {} } ], "crossref": [ { "id": "A0A9J7JPN2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JPN2", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd04402", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04402", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd13319", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13319", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "103163260", "url": "https://www.ncbi.nlm.nih.gov/gene/103163260", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000159", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000159", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000198", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000198", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008936", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008936", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047886", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047886", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047887", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047887", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:103163260", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103163260", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JPN2", "url": "https://www.orthodb.org/?gene=A0A9J7JPN2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23179", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23179", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23179:SF37", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23179:SF37", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00620", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00620", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00788", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00788", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22286", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22286", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027268878", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268878", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FX59", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX59", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FX59-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX59-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JPN2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPN2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JPN2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPN2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDKVASHPLHEEGTQCLTCHRRSLFTEMEILNGKVTDSEIKNQTLRLHGAVELRRGCISKKCHLYLYRDFLVVTNSWYKITFKIKYIIPLTSLWIGDGVVTDYVGPNQAKKSIFLGWPMENFIATFRSVGQKRDWCCFLGRSIKQTKEKYHGMSTALEIFTDGILSSNSAFTVTATHLDTVNDIIRKLQPLLGIPNAEEDYQLWFSSGQEETPCPLLGHENPYAIKMNELRNDAFMALGPSNYSAYLNIQNVIQELQDPHVPGKFIIKPKEPPRDNQQSNSEKTVRRFSLLSRIFHRGASTCQDCACYHTAAPTHGRLFNNPLGAICQDGNLPTSILDMLSLLEEIGPAVEGIFRKAGSITECQDVKEKLDLGEEVNLREESILVVSSVLKDFLRNIPGGVFSSSLYDKWMAVTDQDNEKERISSIQSLLEQLPTPNVVLLRQLFQVLHSIERHSSTNYMTSYNLSVCIAPSVLCLPNSSMLEFRKEIEKQISLVQFFIDNFEKIFEDNTNTHLGESSVIPSNGEETLDTFIGLCETDAAQDDERSCDSEQTHPKDGAEPQCPSAAPHEAVSVEQPLDPRPLNAQCSTEGTTAT", "length": 594, "header": "tr|A0A9J7JPN2-1|A0A9J7JPN2_CRIGR Isoform 1 of Rho GTPase-activating protein 20 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC103163260 PE=4 SV=1 CANONICAL=A0A9J7JPN2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FX59-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FX59/entry", "sequence": { "sequence": "MRLPGMTTVAVNVRGAVQWIRSHLILFMKREPRYKITFKIKYIIPLTSLWIGDGVVTDYVGPNQAKKSIFLGWPMENFIATFRSVGQKRDWCCFLGRSIKQTKEKYHGMSTALEIFTDGILSSNSAFTVTATHLDTVNDIIRKLQPLLGIPNAEEDYQLWFSSGQEETPCPLLGHENPYAIKMNELRNDAFMALGPSNYSAYLNIQNVIQELQDPHVPGKFIIKPKEPPRDNQQSNSEKTVRRFSLLSRIFHRGASTCQDCACYHTAAPTHGRLFNNPLGAICQDGNLPTSILDMLSLLEEIGPAVEGIFRKAGSITECQDVKEKLDLGEEVNLREESILVVSSVLKDFLRNIPGGVFSSSLYDKWMAVTDQDNEKERISSIQSLLEQLPTPNVVLLRQLFQVLHSIERHSSTNYMTSYNLSVCIAPSVLCLPNSSMLEFRKEIEKQISLVQFFIDNFEKIFEDNTNTHLGESSVIPSNGEETLDTFIGLCETDAAQDDERSCDSEQTHPKDGAEPQCPSAAPHEAVSVEQPLDPRPLNAQCSTEGTTAT", "length": 550, "header": "tr|A0A9J7FX59-1|A0A9J7JPN2_CRIGR Computationally mapped isoform of Rho GTPase-activating protein 20 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC103163260 PE=4 SV=1 CANONICAL=A0A9J7JPN2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JPN2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPN2/entry", "sequence": { "sequence": "MDKVASHPLHEEGTQCLTCHRRSLFTEMEILNGKVTDSEIKNQTLRLHGAVELRRGCISKKCHLYLYRDFLVVTNSWYKITFKIKYIIPLTSLWIGDGVVTDYVGPNQAKKSIFLGWPMENFIATFRSVGQKRDWCCFLGRSIKQTKEKYHGMSTALEIFTDGILSSNSAFTVTATHLDTVNDIIRKLQPLLGIPNAEEDYQLWFSSGQEETPCPLLGHENPYAIKMNELRNDAFMALGPSNYSAYLNIQNVIQELQDPHVPGKFIIKPKEPPRDNQQSNSEKTVRRFSLLSRIFHRGASTCQDCACYHTAAPTHGRLFNNPLGAICQDGNLPTSILDMLSLLEEIGPAVEGIFRKAGSITECQDVKEKLDLGEEVNLREESILVVSSVLKDFLRNIPGGVFSSSLYDKWMAVTDQDNEKERISSIQSLLEQLPTPNVVLLRQLFQVLHSIERHSSTNYMTSYNLSVCIAPSVLCLPNSSMLEFRKEIEKQISLVQFFIDNFEKIFEDNTNTHLGESSVIPSNGEETLDTFIGLCETDAAQDDERSCDSEQTHPKDGAEPQCPSAAPHEAVSVEQPLDPRPLNAQCSTEGTTAT", "length": 594, "header": "tr|A0A9J7JPN2-1|A0A9J7JPN2_CRIGR Isoform 1 of Rho GTPase-activating protein 20 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC103163260 PE=4 SV=1 CANONICAL=A0A9J7JPN2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly 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"MNLLYRKTKLEWRQHKEEEAKRSSSKETAPTGPVGPGAVPGPGVRVRDIASLRRSLRMGFMTMPASQEHTPHPCRSAMAPRSLSCHSVGSMDSVGAGPGGGGGGLTEDSSIRRPPAKPRRHPSTKLSMAGSGAETPPSKKAGSQKPTPECRESSRKVPPQKPRRSPNTQLSVSFDESCAAAPCPRGGNLPLQRLSRASRISGDLDAGTQEEEPVYIEMVGDVFRGGGRSGGGLTGPPLGSGGPTPPAGADSDSEDSEAIYEEMKYPLPEEAGDGRANGPPPLMAPSPPQQPHVLQPPPPHPHRRPASALPSRRDGTPTKTTPCEIPPPFPNLLQHRPPLLAFPQAKSASRAPGDGVSRLPVLCHSKEPTGSTPAPQVPAREQETPPLPPPPPAANLLLLGPSGRARSHSTPLPPQGSGQTRGERELPNSHSMICPKAVGVPAAHPTPAALLPGPPKDKAVSYTMVYSAVKVTTHSVLPTGPPLGVGEPKTEEISVLHGMLCASSRPPVPGKSSPHSGAMGSAAGALHHRSCLTSPHSLPDPTAGPLTPLWTYPATAAGLKRPPAYDSLKAGGVLNKGCGIGGPPPMVKIQLQEPGTDGGAFASISCAHVITSSGTPEEEEMGAAFGAGWALQRKVLYGGKRAKELDKVEDSARDWNGSTEGPGKVEPEDRGAVASGIPVRSQGAEGLLARIHHDRGGSRTALPVPCQTFPACHRNGDFTGGYRLGRSASTSGVRQAALHTPRPCSQPRVALSQTHPVLPLPLPPQPARERDGKLLEVIERKRCVCKEIKARHRPDRGLCKQESMPILPSWRRGPEPRKSGTPPCRRQHTVLWDTAI", "length": 836, "header": "tr|A0A9J7FYZ5-1|A0A9J7JQ58_CRIGR Computationally mapped isoform of Neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Nyap1 PE=4 SV=1 CANONICAL=A0A9J7JQ58-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JQ58-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQ58/entry", "sequence": { "sequence": "MNLLYRKTKLEWRQHKEEEAKRSSSKETAPTGPVGPGAVPGPGVRVRDIASLRRSLRMGFMTMPASQEHTPHPCRSAMAPRSLSCHSVGSMDSVGAGPGGGGGGLTEDSSIRRPPAKPRRHPSTKLSMAGSGAETPPSKKAGSQKPTPECRESSRKVPPQKPRRSPNTQLSVSFDESCAAAPCPRGGNLPLQRLSRASRISGDLDAGTQEEEPVYIEMVGDVFRGGGRSGGGLTGPPLGSGGPTPPAGADSDSEDSEAIYEEMKYPLPEEAGDGRANGPPPLMAPSPPQQPHVLQPPPPHPHRRPASALPSRRDGTPTKTTPCEIPPPFPNLLQHRPPLLAFPQAKSASRAPGDGVSRLPVLCHSKEPTGSTPAPQVPAREQETPPLPPPPPAANLLLLGPSGRARSHSTPLPPQGSGQTRGERELPNSHSMICPKAVGVPAAHPTPAALLPGPPKDKAVSYTMVYSAVKVTTHSVLPTGPPLGVGEPKTEEISVLHGMLCASSRPPVPGKSSPHSGAMGSAAGALHHRSCLTSPHSLPDPTAGPLTPLWTYPATAAGLKRPPAYDSLKAGGVLNKGCGIGGPPPMVKIQLQEPGTDGGAFASISCAHVITSSGTPEEEEMGAAFGAGWALQRKVLYGGKRAKELDTEVEDSARDWNGSTEGPGKVEPEDRGAVASGIPVRSQGAEGLLARIHHDRGGSRTALPVPCQTFPACHRNGDFTGGYRLGRSASTSGVRQAALHTPRPCSQPRVALSQTHPVLPLPLPPQPARERDGKLLEVIERKRCVCKEIKARHRPDRGLCKQESMPILPSWRRGPEPRKSGTPPCRRQHTVLWDTAI", "length": 837, "header": "tr|A0A9J7JQ58-1|A0A9J7JQ58_CRIGR Isoform 1 of Neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Nyap1 PE=4 SV=1 CANONICAL=A0A9J7JQ58-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 244, "start_aa": "Thr", "end_pos": 244, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr244", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 372, "start_aa": "Thr", "end_pos": 372, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr372", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 446, "start_aa": "Thr", "end_pos": 446, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr446", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 542, "start_aa": "Thr", "end_pos": 542, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr542", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FYZ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYZ5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FYZ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYZ5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100751098", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751098", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "neuron projection morphogenesis", "id": "GO:0048812", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048812", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JQ58", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQ58" } ], "pmid": "" }, { "name": "phosphatidylinositol 3-kinase/protein kinase B signal transduction", "id": "GO:0043491", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043491", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JQ58", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQ58" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 657, "end_pos": 659, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JQ58", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQ58" }, { "id": "PF15452", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15452" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter C-terminal", "eco_id": "ECO_0000259", "start_pos": 577, "end_pos": 837, "start_aa": "Gly", "end_aa": "Ile", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7JQ58", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQ58" }, { "id": "PF15439", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15439" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter N-terminal", "eco_id": "ECO_0000259", "start_pos": 4, "end_pos": 427, "start_aa": "Leu", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 244, 372, 446, 542 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 657, "end_pos": 659 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 4 }, { "field": 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"table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JQG2-1", "uniprot_ac": "A0A9J7JQG2", "uniprot_id": "A0A9J7JQG2_CRIGR", "mass": { "chemical_mass": 28035.0, "monoisotopic_mass": 28035.0 }, "refseq": { "ac": "XP_027272543", "name": "zinc finger FYVE domain-containing protein 21 isoform X8", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272543" }, "gene_names": [ { "name": "Zfyve21", "type": "recommended", "evidence": [ { "id": "A0A9J7JQG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQG2" } ] }, { "name": "LOC113836160", "type": "synonym", "evidence": [ { "id": "A0A9J7JQG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQG2" } ] }, { "name": "Zfyve21", "type": "synonym", "evidence": [ { "id": "XP_027272543", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272543" } ] } ], "protein_names": [ { "name": "Zinc finger FYVE domain-containing protein 21 isoform X4", "type": "synonym", "evidence": [ { "id": "A0A9J7JQG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQG2/entry#names_and_taxonomy" } ] }, { "name": "Zinc finger FYVE domain-containing protein 21 isoform X8", "type": "synonym", "evidence": [ { "id": "A0A9J7JQG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQG2/entry#names_and_taxonomy" } ] }, { "name": "zinc finger FYVE domain-containing protein 21 isoform X8", "type": "synonym", "evidence": [ { "id": "XP_027272543", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272543" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027272543", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272543" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JQG2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQG2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Zfyve21", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQG2", "locus": {} } ], "crossref": [ { "id": "cd15727", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15727", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100767357", "url": "https://www.ncbi.nlm.nih.gov/gene/100767357", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000306", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000306", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011011", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011011", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017455", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017455", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032031", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032031", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038632", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038632", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052113", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052113", "database": 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"url": "https://www.uniprot.org/uniprotkb/A0A9J7G0F1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JQG2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JQG2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQG2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSGVAARRDAKKLVRSPSGLRMVPEHRAFGSPFGLEEPQWVPDKECPRCMQCDAKFDFITRKHHCRRCGKCFCDRCCSQKVPLRRMCFVDPVRQCAECALVSHREAEFYDKQLKVLLSGATFLVTFGDSEKPETMVCRLSNNQRCLILDGDSHHEIEIAHVCTVQILTEGFTPGEKDIHTYTSLLGSLLASEGSTRATGMFLQYTVPGAEAATQLRLMAGEDANGSKRQAAAWLAAMHKATKLLYESRDQ", "length": 251, "header": "tr|A0A9J7JQG2-1|A0A9J7JQG2_CRIGR Isoform 1 of Zinc finger FYVE domain-containing protein 21 isoform X4 OS=Cricetulus griseus OX=10029 GN=Zfyve21 PE=4 SV=1 CANONICAL=A0A9J7JQG2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G0F1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0F1/entry", "sequence": { 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This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027272908", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272908" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JSB2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSB2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Pogk", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSB2", "locus": {} } ], "crossref": [ { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100769000", "url": "https://www.ncbi.nlm.nih.gov/gene/100769000", "database": "GeneID", "categories": [ "Genome 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Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G0J0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0J0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G0J0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0J0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769000", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769000", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JSB2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSB2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JSB2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSB2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JSB2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSB2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 513, "end_pos": 515, "annotation": "n_glycosylation_sequon" }, { "start_pos": 9, "end_pos": 11, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JSB2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSB2" }, { "id": "PS51253", "database": "PROSITE", 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{ "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JSQ0-1", "uniprot_ac": "A0A9J7JSQ0", "uniprot_id": "A0A9J7JSQ0_CRIGR", "mass": { "chemical_mass": 124652.0, "monoisotopic_mass": 124652.0 }, "refseq": { "ac": "XP_027273543", "name": "R3H domain-containing protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273543" }, "gene_names": [ { "name": "R3hdm1", "type": "recommended", "evidence": [ { "id": "A0A9J7JSQ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSQ0" } ] }, { "name": "R3hdm1", "type": "synonym", "evidence": [ { "id": "XP_027273543", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273543" } ] } ], "protein_names": [ { "name": "R3H domain-containing protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027273543", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273543" }, { "id": "A0A9J7JSQ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSQ0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027273543", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273543" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JSQ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSQ0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "R3hdm1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSQ0", "locus": {} } ], "crossref": [ { "id": "A0A9J7JSQ0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JSQ0", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd02642", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02642", "database": "CDD", "categories": [ "Protein Classification" ] 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"categories": [ "Protein Classification" ] }, { "id": "PTHR15672", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15672", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15672:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15672:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01424", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01424", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12752", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12752", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027273543", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273543", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G174", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G174", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G174-1", "url": 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"database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G3B0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3B0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G5P9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5P9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G5P9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5P9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JPB4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPB4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JPB4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPB4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JSQ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSQ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JSQ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSQ0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"header": "tr|A0A9J7G174-1|A0A9J7JSQ0_CRIGR Computationally mapped isoform of R3H domain-containing protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=R3hdm1 PE=4 SV=1 CANONICAL=A0A9J7JSQ0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G1D1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1D1/entry", "sequence": { "sequence": "MRMSDIVIIKDETETMKDLEAEVKDTTRVENLVKSENYGKILAEKNEHCIDNNIDLQEKIQIQLTQSFEKEEKPSKDETDKEKASDKLPRKMLSRDSSQEYTDSTGIDLHEFLVNTLKNNPRDRMMLLKLEQEILDFIGNNESPRKKFPPMTSYHRMLLHRVAAYFGLDHNVDQSGKSVIVNKTSNTRIPDQKFNEHIKDDRGEDFQKRYILKRDNSSFDKDDSQMRIRLKDDRRSKSIEEREEEYQRARDRIFSQDSLCSQENYIIDKRIQDEDTSGTQQRRQIFRVNKDASGRSTNSHQSSTENDLKYSEPRPWSSTDSDSSLRNLKPAVTKASSFSGISVLTRGDSSGSSKSIGRLSKTGSESSGSVGSSTGSLSHTQQPLPGSALSQPSHGTPVIYPAASTHSSLSFDGGLSGQGASPSTSFLLLPLEATGIPPGSILINPQTGQPFINPDGTPVVYNPPMTQQPVRTQVPGPPQPPLPPPPPQQPAASHIFSQPVGPLQSSSQPVQCSPAPYPSPLLPVSPTQQYSVDNLGSQFSHMSLARQPSADGSDPHATMFQSTVVLQSPQQSGYIVTTAPPHPPPPPPPPPPPPPPSLPPGQSVPTASFSASGHPVSQPVLQQQGYLPQPSPQMPACYCAPGHYHSSQPQYRPVPSVHYSSHLNQPLPQPAQQTGYQVVPNQQQNYQGIVGVQSPQSQSLMGGQPNNTGTHIQGVVIPYPSVPSYQVSLPQGSQGIAHQTYQQPVVFPNQSNQGSLPTTGMPVYYSVIPPGQQSNLSSAVGYLQHPGSEQVQFPRTTSPCSSQQLQGHQCAAMPQQPPGGGMVMMQLNLPNNSQSRAHSPPQWKQNKYYCDHQRGQKCMEFSNIDNIVQHSPQLSSPIISPVQSPAPAQLSTLKTIRPSGPPLSIMSQFARPFVPGQGDARYPLLGQPLQYNPPTLLHGHIPHQQGQSGSRHGNRGRRQAKKAASTDLGAGEAVVGKVLEITELPDGITRMEAEKLFGELFKIGAKIRWLRDPQSQPQLHRHPLCCGSGDSTVNPERSKPSDLASTYTVLATFPSISAAQSALKKQIHSVNKFKLRMSKKHYDFHILERASSQ", "length": 1093, "header": "tr|A0A9J7G1D1-1|A0A9J7JSQ0_CRIGR Computationally mapped isoform of R3H domain-containing protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=R3hdm1 PE=4 SV=1 CANONICAL=A0A9J7JSQ0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G1G7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1G7/entry", "sequence": { "sequence": "MEREVADCRAVNSGIFKRKRPDQKFNEHIKDDRGEDFQKRYILKRDNSSFDKDDSQMRIRLKDDRRSKSIEEREEEYQRARDRIFSQDSLCSQENYIIDKRIQDEDTSGTQQRRQIFRVNKDASGRSTNSHQSSTENDLKYSEPRPWSSTDSDSSLRNLKPAVTKASSFSGISVLTRGDSSGSSKSIGRLSKTGSESSGSVGSSTGSLSHTQQPLPGSALSQPSHGTPVIYPAASTHSSLSFDGGLSGQGASPSTSFLLLPLEATGIPPGSILINPQTGQPFINPDGTPVVYNPPMTQQPVRTQVPGPPQPPLPPPPPQQPAASHIFSQPVGPLQSSSQPVQCSPAPYPSPLLPVSPTQQYSVDNLGSQFSHMSLARQPSADGSDPHATMFQSTVVLQSPQQSGYIVTTAPPHPPPPPPPPPPPPPPSLPPGQSVPTASFSASGHPVSQPVLQQQGYLPQPSPQMPACYCAPGHYHSSQPQYRPVPSVHYSSHLNQPLPQPAQQTGYQVVPNQQQNYQGIVGVQSPQSQSLMGGQPNNTGTHIQGVVIPYPSVPSYQVSLPQGSQGIAHQTYQQPVVFPNQSNQGSLPTTGMPVYYSVIPPGQQSNLSSAVGYLQHPGSEQVQFPRTTSPCSSQQLQGHQCAAMPQQPPGGGMVMMQLNLPNNSQSRAHSPPQWKQNKYYCDHQRGQKCMEFSNIDNIVQHSPQLSSPIISPVQSPAPAQLSTLKTIRPSGPPLSIMSQFARPFVPGQGDARYPLLGQPLQYNPPTLLHGHIPHQQGQSGSRHGNRGRRQAKKAASTDLGAGEAVVGKVLEITELPDGITRMEAEKLFGELFKIGAKIRWLRDPQSQPQLHRHPLCCGSGDSTVNPERSKPSDLASTYTVLATFPSISAAQSALKKQIHSVNKFKLRMSKKHYDFHILERASSQ", "length": 924, "header": "tr|A0A9J7G1G7-1|A0A9J7JSQ0_CRIGR Computationally mapped isoform of R3H domain-containing protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=R3hdm1 PE=4 SV=1 CANONICAL=A0A9J7JSQ0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G397-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G397/entry", "sequence": { "sequence": "MRMSDIVIIKDETETMKDLEAEVKDTTRVENLVKSENYGKILAEKNEHCIDNNIDLQSSSKLKLVRSLAVCEESPPPPAAEISQETQEKIQIQLTQSFEKEEKPSKDETDKEKASDKLPRKMLSRDSSQEYTDSTGIDLHEFLVNTLKNNPRDRMMLLKLEQEILDFIGNNESPRKKFPPMTSYHRMLLHRVAAYFGLDHNVDQSGKSVIVNKTSNTRIPDQKFNEHIKDDRGEDFQKRYILKRDNSSFDKDDSQMRIRLKDDRRSKSIEEREEEYQRARDRIFSQDSLCSQENYIIDKRIQDEDTSGTQQRRQIFRVNKDASGRSTNSHQSSTENDLKYSEPRPWSSTDSDSSLRNLKPAVTKASSFSGISVLTRGDSSGSSKSIGRLSKTGSESSGSVGSSTGSLSHTQQPLPGSALSQPSHGTPVIYPAASTHSSLSFDGGLSGQGASPSTSFLLLPLEATGIPPGSILINPQTGQPFINPDGTPVVYNPPMTQQPVRTQVPGPPQPPLPPPPPQQPAASHIFSQPVGPLQSSSQPVQCSPAPYPSPLLPVSPTQQYSVDNLGSQFSHMSLARQPSADGSDPHATMFQSTVVLQSPQQSGYIVTTAPPHPPPPPPPPPPPPPPSLPPGQSVPTASFSASGHPVSQPVLQQQGYLPQPSPQMPACYCAPGHYHSSQPQYRPVPSVHYSSHLNQPLPQPAQQTGYQVVPNQQQNYQGIVGVQSPQSQSLMGGQPNNTGTHIQGVVIPYPSVPSYQVSLPQGSQGIAHQTYQQPVVFPNQSNQGSLPTTGMPVYYSVIPPGQQSNLSSAVGYLQHPGSEQVQFPRTTSPCSSQQLQGHQCAAMPQQPPGGGMVMMQLNLPNNSQSRAHSPPQWKQNKYYCDHQRGQKCMEFSNIDNIVQHSPQLSSPIISPVQSPAPAQLSTLKTIRPSGPPLSIMSQFARPFVPGQGDARYPLLGQPLQYNPPTLLHGHIPHQQGQSGSRHGNRGRRQAKKAASTDLGAGEAVVGKVLEITELPDGITRMEAEKLFGELFKIGAKIRWLRDPQSQPQLHRHPLCCGSGDSTVNPERSKPSDLASTYTVLATFPSISAAQSALKKQIHSVNKFKLRMSKKHYDFHILERASSQ", "length": 1123, "header": "tr|A0A9J7G397-1|A0A9J7JSQ0_CRIGR Computationally mapped isoform of R3H domain-containing protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=R3hdm1 PE=4 SV=1 CANONICAL=A0A9J7JSQ0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G3B0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3B0/entry", "sequence": { "sequence": "MRMSDIVIIKDETETMKDLEAEVKDTTRVENLVKSENYGKILAEKNEHCIDNNIDLQRPLQSFGQTGKRSKSSSKLKLVRSLAVCEESPPPPAAEISQETQEKIQIQLTQSFEKEEKPSKDETDKEKASDKLPRKMLSRDSSQEYTDSTGIDLHEFLVNTLKNNPRDRMMLLKLEQEILDFIGNNESPRKKFPPMTSYHRMLLHRVAAYFGLDHNVDQSGKSVIVNKTSNTRIPDQKFNEHIKDDRGEDFQKRYILKRDNSSFDKDDSQMRIRLKDDRRSKSIEEREEEYQRARDRIFSQDSLCSQENYIIDKRIQDEDTSGTQQRRQIFRVNKDASGRSTNSHQSSTENDLKYSEPRPWSSTDSDSSLRNLKPAVTKASSFSGISVLTRGDSSGSSKSIGRLSKTGSESSGSVGSSTGSLSHTQQPLPGSALSQPSHGTPVIYPAASTHSSLSFDGGLSGQGASPSTSFLLLPLEATGIPPGSILINPQTGQPFINPDGTPVVYNPPMTQQPVRTQVPGPPQPPLPPPPPQQPAASHIFSQDNLGSQFSHMSLARQPSADGSDPHATMFQSTVVLQSPQQSGYIVTTAPPHPPPPPPPPPPPPPPSLPPGQSVPTASFSASGHPVSQPVLQQQGYLPQPSPQMPACYCAPGHYHSSQPQYRPVPSVHYSSHLNQPLPQPAQQTGYQVVPNQQQNYQGIVGVQSPQSQSLMGGQPNNTGTHIQGVVIPYPSVPSYQVSLPQGSQGIAHQTYQQPVVFPNQSNQGSLPTTGMPVYYSVIPPGQQSNLSSAVGYLQHPGSEQVQFPRTTSPCSSQQLQGHQCAAMPQQPPGGGMVMMQLNLPNNSQSRAHSPPQWKQNKYYCDHQRGQKCMEFSNIDNIVQHSPQLSSPIISPVQSPAPAQLSTLKTIRPSGPPLSIMSQFARPFVPGQGDARYPLLGQPLQYNPPTLLHGHIPHQQGQSGSRHGNRGRRQAKKAASTDLGAGEAVVGKVLEITELPDGITRMEAEKLFGELFKIGAKIRWLRDPQSQPQLHRHPLCCGSGDSTVNPERSKPSDLASTYTVLATFPSISAAQSALKKQIHSVNKFKLRMSKKHYDFHILERASSQ", "length": 1103, "header": "tr|A0A9J7G3B0-1|A0A9J7JSQ0_CRIGR Computationally mapped isoform of R3H domain-containing protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=R3hdm1 PE=4 SV=1 CANONICAL=A0A9J7JSQ0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G5P9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5P9/entry", "sequence": { "sequence": "MRMSDIVIIKDETETMKDLEAEVKDTTRVENLVKSENYGKILAEKNEHCIDNNIDLQRPLQSFGQTGKRSKSSSKLKLVRSLAVCEESPPPPAAEISQETQEKIQIQLTQSFEKEEKPSKDETDKEKASDKLPRKMLSRDSSQEYTDSTGIDLHEFLVNTLKNNPRDRMMLLKLEQEILDFIGNNESPRKKFPPMTSYHRMLLHRVAAYFGLDHNVDQSGKSVIVNKTSNTRIPDQKFNEHIKDDRGEDFQKRYILKRDNSSFDKDDSQMRIRLKDDRRSKSIEEREEEYQRARDRIFSQDSLCSQENYIIDKRIQDEDTSGTQQRRQIFRVNKDASGRSTNSHQSSTENDLKYSEPRPWSSTDSDSSLRNLKPAVTKASSFSGISVLTRGDSSGSSKSIGRLSKTGQPFINPDGTPVVYNPPMTQQPVRTQVPGPPQPPLPPPPPQQPAASHIFSQPVGPLQSSSQPVQCSPAPYPSPLLPVSPTQQYSVDNLGSQFSHMSLARQPSADGSDPHATMFQSTVVLQSPQQSGYIVTTAPPHPPPPPPPPPPPPPPSLPPGQSVPTASFSASGHPVSQPVLQQQGYLPQPSPQMPACYCAPGHYHSSQPQYRPVPSVHYSSHLNQPLPQPAQQTGYQVVPNQQQNYQGIVGVQSPQSQSLMGGQPNNTGTHIQGVVIPYPSVPSYQVSLPQGSQGIAHQTYQQPVVFPNQSNQGSLPTTGMPVYYSVIPPGQQSNLSSAVGYLQHPGSEQVQFPRTTSPCSSQQLQGHQCAAMPQQPPGGGMVMMQLNLPNNSQSRAHSPPQWKQNKYYCDHQRGQKCMEFSNIDNIVQHSPQLSSPIISPVQSPAPAQLSTLKTIRPSGPPLSIMSQFARPFVPGQGDARYPLLGQPLQYNPPTLLHGHIPHQQGQSGSRHGNRGRRQAKKAASTDLGAGEAVVGKVLEITELPDGITRMEAEKLFGELFKIGAKIRWLRDPQSQPQLHRHPLCCGSGDSTVNPERSKPSDLASTYTVLATFPSISAAQSALKKQIHSVNKFKLRMSKKHYDFHILERASSQ", "length": 1052, "header": "tr|A0A9J7G5P9-1|A0A9J7JSQ0_CRIGR Computationally mapped isoform of R3H domain-containing protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=R3hdm1 PE=4 SV=1 CANONICAL=A0A9J7JSQ0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JPB4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPB4/entry", "sequence": { "sequence": "MRMSDIVIIKDETETMKDLEAEVKDTTRVENLVKSENYGKILAEKNEHCIDNNIDLQRPLQSFGQTGKRSKSSSKLKLVRSLAVCEESPPPPAAEISQETQEKIQIQLTQSFEKEEKPSKDETDKEKASDKLPRKMLSRDSSQEYTDSTGIDLHEFLVNTLKNNPRDRMMLLKLEQEILDFIGNNESPRKKFPPMTSYHRMLLHRVAAYFGLDHNVDQSGKSVIVNKTSNTRIPDQKFNEHIKDDRGEDFQKRYILKRDNSSFDKDDSQMRIRLKDDRRSKSIEEREEEYQRARDRIFSQDSLCSQENYIIDKRIQDEDTSGTQQRRQIFRVNKDASGRSTNSHQSSTENDLKYSEPRPWSSTDSDSSLRNLKPAVTKASSFSGISVLTRGDSSGSSKSIGRLSKTGSESSGSVGSSTGSLSHTQQPLPGSALSQPSHGTPVIYPAASTHSSLSFDGGLSGQGASPSTSFLLLPLEATGIPPGSILINPQTGQPFINPDGTPVVYNPPMTQQPVRTQVPGPPQPPLPPPPPQQPAASHIFSQPVGPLQSSSQPVQCSPAPYPSPLLPVSPTQQYSVDNLGSQFSHMSLARQPSADGSDPHATMFQSTVVLQSPQQSGYIVTTAPPHPPPPPPPPPPPPPPSLPPGQSVPTASFSASGHPVSQPVLQQQGYLPQPSPQMPACYCAPGHYHSSQPQYRPVPSVHYSSHLNQPLPQPAQQTGYQVVPNQQQNYQGIVGVQSPQSQSLMGGQPNNTGTHIQGVVIPYPSVPSYQVSLPQGSQGIAHQTYQQPVVFPNQSNQGSLPTTGMPVYYSVIPPGQQSNLSSAVGYLQHPGSEQVQFPRTTSPCSSQQLQGHQCAAMPQQPPGGGMVMMQLNLPNNSQSRAHSPPQWKQNKYYCDHQRGQKCMEFSNIDNIVQHSPQLSSPIISPVQSPAPAQLSTLKTIRPSGPPLSIMSQFARPFVPGQVSKLW", "length": 966, "header": "tr|A0A9J7JPB4-1|A0A9J7JPB4_CRIGR Computationally mapped isoform of R3H domain-containing protein 1 isoform X7 OS=Cricetulus griseus OX=10029 GN=R3hdm1 PE=4 SV=1 CANONICAL=A0A9J7JSQ0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JSQ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSQ0/entry", "sequence": { "sequence": "MRMSDIVIIKDETETMKDLEAEVKDTTRVENLVKSENYGKILAEKNEHCIDNNIDLQRPLQSFGQTGKRSKSSSKLKLVRSLAVCEESPPPPAAEISQETQEKIQIQLTQSFEKEEKPSKDETDKEKASDKLPRKMLSRDSSQEYTDSTGIDLHEFLVNTLKNNPRDRMMLLKLEQEILDFIGNNESPRKKFPPMTSYHRMLLHRVAAYFGLDHNVDQSGKSVIVNKTSNTRIPDQKFNEHIKDDRGEDFQKRYILKRDNSSFDKDDSQMRIRLKDDRRSKSIEEREEEYQRARDRIFSQDSLCSQENYIIDKRIQDEDTSGTQQRRQIFRVNKDASGRSTNSHQSSTENDLKYSEPRPWSSTDSDSSLRNLKPAVTKASSFSGISVLTRGDSSGSSKSIGRLSKTGSESSGSVGSSTGSLSHTQQPLPGSALSQPSHGTPVIYPAASTHSSLSFDGGLSGQGASPSTSFLLLPLEATGIPPGSILINPQTGQPFINPDGTPVVYNPPMTQQPVRTQVPGPPQPPLPPPPPQQPAASHIFSQPVGPLQSSSQPVQCSPAPYPSPLLPVSPTQQYSVDNLGSQFSHMSLARQPSADGSDPHATMFQSTVVLQSPQQSGYIVTTAPPHPPPPPPPPPPPPPPSLPPGQSVPTASFSASGHPVSQPVLQQQGYLPQPSPQMPACYCAPGHYHSSQPQYRPVPSVHYSSHLNQPLPQPAQQTGYQVVPNQQQNYQGIVGVQSPQSQSLMGGQPNNTGTHIQGVVIPYPSVPSYQVSLPQGSQGIAHQTYQQPVVFPNQSNQGSLPTTGMPVYYSVIPPGQQSNLSSAVGYLQHPGSEQVQFPRTTSPCSSQQLQGHQCAAMPQQPPGGGMVMMQLNLPNNSQSRAHSPPQWKQNKYYCDHQRGQKCMEFSNIDNIVQHSPQLSSPIISPVQSPAPAQLSTLKTIRPSGPPLSIMSQFARPFVPGQGDARYPLLGQPLQYNPPTLLHGHIPHQQGQSGSRHGNRGRRQAKKAASTDLGAGEAVVGKVLEITELPDGITRMEAEKLFGELFKIGAKIRWLRDPQSQPQLHRHPLCCGSGDSTVNPERSKPSDLASTYTVLATFPSISAAQSALKKQIHSVNKFKLRMSKKHYDFHILERASSQ", "length": 1137, "header": "tr|A0A9J7JSQ0-1|A0A9J7JSQ0_CRIGR Isoform 1 of R3H domain-containing protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=R3hdm1 PE=4 SV=1 CANONICAL=A0A9J7JSQ0-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 571, "start_aa": "Thr", "end_pos": 571, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr571", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G174", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G174" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G174", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G174" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100765787", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765787", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JSQ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSQ0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 185, "end_pos": 187, "annotation": "n_glycosylation_sequon" }, { "start_pos": 226, "end_pos": 228, "annotation": "n_glycosylation_sequon" }, { "start_pos": 260, "end_pos": 262, "annotation": "n_glycosylation_sequon" }, { "start_pos": 750, "end_pos": 752, "annotation": "n_glycosylation_sequon" }, { "start_pos": 793, "end_pos": 795, "annotation": "n_glycosylation_sequon" }, { "start_pos": 819, "end_pos": 821, "annotation": "n_glycosylation_sequon" }, { "start_pos": 875, "end_pos": 877, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JSQ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSQ0" }, { "id": "PS51061", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51061" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "R3H", "eco_id": "ECO_0000259", "start_pos": 168, "end_pos": 231, "start_aa": "Arg", "end_aa": "Thr", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7JSQ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSQ0" }, { "id": "PS51673", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51673" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SUZ", "eco_id": "ECO_0000259", "start_pos": 232, "end_pos": 302, "start_aa": "Arg", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 571 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 185, "end_pos": 187 }, { "start_pos": 226, "end_pos": 228 }, { "start_pos": 260, "end_pos": 262 }, { "start_pos": 750, "end_pos": 752 }, { "start_pos": 793, "end_pos": 795 }, { "start_pos": 819, "end_pos": 821 }, { "start_pos": 875, "end_pos": 877 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JT66-1", "uniprot_ac": "A0A9J7JT66", "uniprot_id": "A0A9J7JT66_CRIGR", "mass": { "chemical_mass": 70763.0, "monoisotopic_mass": 70763.0 }, "refseq": { "ac": "XP_007643856", "name": "protein numb homolog isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007643856" }, "gene_names": [ { "name": "Numb", "type": "recommended", "evidence": [ { "id": "A0A9J7JT66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JT66" } ] }, { "name": "Numb", "type": "synonym", "evidence": [ { "id": "XP_007643856", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007643856" } ] } ], "protein_names": [ { "name": "Protein numb homolog isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7JT66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JT66/entry#names_and_taxonomy" } ] }, { "name": "protein numb homolog isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007643856", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007643856" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614123.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007643856", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007643856" } ] }, { "annotation": "Plays a role in the process of neurogenesis.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G298", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G298#function" }, { "database": "UniProtKB", "id": "PIRNR017607", "url": "https://www.uniprot.org/uniprotkb/PIRNR017607#function" }, { "database": "UniProtKB", "id": "A0A9J7G477", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G477#function" }, { "database": "UniProtKB", "id": "A0A9J7G6L4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6L4#function" }, { "database": "UniProtKB", "id": "A0A9J7JT66", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JT66#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JT66", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JT66" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Numb", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JT66", "locus": {} } ], "crossref": [ { "id": "cd01268", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01268", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100771300", "url": "https://www.ncbi.nlm.nih.gov/gene/100771300", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006020", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006020", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010449", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010449", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016698", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016698", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100771300", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771300", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7G298", "url": "https://www.orthodb.org/?gene=A0A9J7G298", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G477", "url": "https://www.orthodb.org/?gene=A0A9J7G477", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G6L4", "url": "https://www.orthodb.org/?gene=A0A9J7G6L4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JT66", "url": "https://www.orthodb.org/?gene=A0A9J7JT66", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47368", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47368", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47368:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47368:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00640", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00640", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF06311", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06311", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007643856", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007643856", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G298", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G298", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G298-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G298-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G477", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G477", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G477-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G477-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G6L4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6L4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G6L4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6L4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JT66", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JT66", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JT66-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JT66-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNKLRQSFRRKKDVYVPEASRPHQWQTDEEGVRTGKCSFPVKYLGHVEVDESRGMHICEDAVKRLKAERKFFKGFFGKTGKKAVKAVLWVSADGLRVVDEKTKDLIVDQTIEKVSFCAPDRNFDRAFSYICRDGTTRRWICHCFMAVKDTGERLSHAVGCAFAACLERKQKREKECGVTATFDASRTTFTREGSFRVTTATEQAEREEIMKQLQDAKKEQDKAVVGPSVAPGNTAPSPSSPTSPTSDTTASLEMNNPHAIPRRHAPIEQLARQGSFRGFPALSQKMSPFKRQLSLRINELPSTMQRKTDFPIKNAVPEVEGEAESISSLCSQITSAFSTPSEDPFSSAPMTKPVTLVAPQSPVLQANGTDSAFYVLAAKPANTALAPVAMPVRETNPWAHAPDAANQEIAAIRPGTEWGQSSGAASPGLFQAGHRRTPSEADRWLEEVSKSVRAQQPQASAAPLQPALQPPPPAAIAPPPAPPFQGNAFLASQPVPVGVVPPLQPAFVPAQSYPVANGMPYPASNVPVVGITPSQMVANVFGTAGHPQATHPHQSPSLANQQTFPQYETTSATISPFFKPPAQHLNGSAAFNGVDDGRLASGSRHAEVPAGTCPVDPFEAQWAALESKSKQRTNPSPTNPFSSDLQKTFEIEL", "length": 653, "header": "tr|A0A9J7JT66-1|A0A9J7JT66_CRIGR Isoform 1 of Protein numb homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=Numb PE=4 SV=1 CANONICAL=A0A9J7JT66-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G298-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G298/entry", "sequence": { "sequence": "MNKLRQSFRRKKDVYVPEASRPHQWQTDEEGVRTGKCSFPVKYLGHVEVDESRGMHICEDAVKRLKAERKFFKGFFGKTGKKAVKAVLWVSADGLRVVDEKTKDLIVDQTIEKVSFCAPDRNFDRAFSYICRDGTTRRWICHCFMAVKDTGERLSHAVGCAFAACLERKQKREKECGVTATFDASRTTFTREGSFRVTTATEQAEREEIMKQLQDAKKEQDKAVVGPSVAPGNTAPSPSSPTSPTSDTTASLEMNNPHAIPRRHAPIEQLARQGSFRGFPALSQKMSPFKRQLSLRINELPSTMQRKTDFPIKNAVPEVEGEAESISSLCSQITSAFSTPSEDPFSSAPMTKPVTLVAPQSPVLQGTEWGQSSGAASPGLFQAGHRRTPSEADRWLEEVSKSVRAQQPQASAAPLQPALQPPPPAAIAPPPAPPFQGNAFLASQPVPVGVVPPLQPAFVPAQSYPVANGMPYPASNVPVVGITPSQMVANVFGTAGHPQATHPHQSPSLANQQTFPQYETTSATISPFFKPPAQHLNGSAAFNGVDDGRLASGSRHAEVPAGTCPVDPFEAQWAALESKSKQRTNPSPTNPFSSDLQKTFEIEL", "length": 604, "header": "tr|A0A9J7G298-1|A0A9J7JT66_CRIGR Computationally mapped isoform of Protein numb homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=Numb PE=4 SV=1 CANONICAL=A0A9J7JT66-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G477-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G477/entry", "sequence": { "sequence": "MNKLRQSFRRKKDVYVPEASRPHQWQTDEEGVRTGKCSFPVKYLGHVEVDESRGMHICEDAVKRLKATGKKAVKAVLWVSADGLRVVDEKTKDLIVDQTIEKVSFCAPDRNFDRAFSYICRDGTTRRWICHCFMAVKDTGERLSHAVGCAFAACLERKQKREKECGVTATFDASRTTFTREGSFRVTTATEQAEREEIMKQLQDAKKEQDKAVVGPSVAPGNTAPSPSSPTSPTSDTTASLEMNNPHAIPRRHAPIEQLARQGSFRGFPALSQKMSPFKRQLSLRINELPSTMQRKTDFPIKNAVPEVEGEAESISSLCSQITSAFSTPSEDPFSSAPMTKPVTLVAPQSPVLQANGTDSAFYVLAAKPANTALAPVAMPVRETNPWAHAPDAANQEIAAIRPGTEWGQSSGAASPGLFQAGHRRTPSEADRWLEEVSKSVRAQQPQASAAPLQPALQPPPPAAIAPPPAPPFQGNAFLASQPVPVGVVPPLQPAFVPAQSYPVANGMPYPASNVPVVGITPSQMVANVFGTAGHPQATHPHQSPSLANQQTFPQYETTSATISPFFKPPAQHLNGSAAFNGVDDGRLASGSRHAEVPAGTCPVDPFEAQWAALESKSKQRTNPSPTNPFSSDLQKTFEIEL", "length": 642, "header": "tr|A0A9J7G477-1|A0A9J7JT66_CRIGR Computationally mapped isoform of Protein numb homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=Numb PE=4 SV=1 CANONICAL=A0A9J7JT66-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G6L4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6L4/entry", "sequence": { "sequence": "MNKLRQSFRRKKDVYVPEASRPHQWQTDEEGVRTGKCSFPVKYLGHVEVDESRGMHICEDAVKRLKATGKKAVKAVLWVSADGLRVVDEKTKDLIVDQTIEKVSFCAPDRNFDRAFSYICRDGTTRRWICHCFMAVKDTGERLSHAVGCAFAACLERKQKREKECGVTATFDASRTTFTREGSFRVTTATEQAEREEIMKQLQDAKKEQDKAVVGPSVAPGNTAPSPSSPTSPTSDTTASLEMNNPHAIPRRHAPIEQLARQGSFRGFPALSQKMSPFKRQLSLRINELPSTMQRKTDFPIKNAVPEVEGEAESISSLCSQITSAFSTPSEDPFSSAPMTKPVTLVAPQSPVLQGTEWGQSSGAASPGLFQAGHRRTPSEADRWLEEVSKSVRAQQPQASAAPLQPALQPPPPAAIAPPPAPPFQGNAFLASQPVPVGVVPPLQPAFVPAQSYPVANGMPYPASNVPVVGITPSQMVANVFGTAGHPQATHPHQSPSLANQQTFPQYETTSATISPFFKPPAQHLNGSAAFNGVDDGRLASGSRHAEVPAGTCPVDPFEAQWAALESKSKQRTNPSPTNPFSSDLQKTFEIEL", "length": 593, "header": "tr|A0A9J7G6L4-1|A0A9J7JT66_CRIGR Computationally mapped isoform of Protein numb homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=Numb PE=4 SV=1 CANONICAL=A0A9J7JT66-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JT66-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JT66/entry", "sequence": { "sequence": "MNKLRQSFRRKKDVYVPEASRPHQWQTDEEGVRTGKCSFPVKYLGHVEVDESRGMHICEDAVKRLKAERKFFKGFFGKTGKKAVKAVLWVSADGLRVVDEKTKDLIVDQTIEKVSFCAPDRNFDRAFSYICRDGTTRRWICHCFMAVKDTGERLSHAVGCAFAACLERKQKREKECGVTATFDASRTTFTREGSFRVTTATEQAEREEIMKQLQDAKKEQDKAVVGPSVAPGNTAPSPSSPTSPTSDTTASLEMNNPHAIPRRHAPIEQLARQGSFRGFPALSQKMSPFKRQLSLRINELPSTMQRKTDFPIKNAVPEVEGEAESISSLCSQITSAFSTPSEDPFSSAPMTKPVTLVAPQSPVLQANGTDSAFYVLAAKPANTALAPVAMPVRETNPWAHAPDAANQEIAAIRPGTEWGQSSGAASPGLFQAGHRRTPSEADRWLEEVSKSVRAQQPQASAAPLQPALQPPPPAAIAPPPAPPFQGNAFLASQPVPVGVVPPLQPAFVPAQSYPVANGMPYPASNVPVVGITPSQMVANVFGTAGHPQATHPHQSPSLANQQTFPQYETTSATISPFFKPPAQHLNGSAAFNGVDDGRLASGSRHAEVPAGTCPVDPFEAQWAALESKSKQRTNPSPTNPFSSDLQKTFEIEL", "length": 653, "header": "tr|A0A9J7JT66-1|A0A9J7JT66_CRIGR Isoform 1 of Protein numb homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=Numb PE=4 SV=1 CANONICAL=A0A9J7JT66-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 339, "start_aa": "Thr", "end_pos": 339, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr339", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G298", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G298" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"XP_027276038", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027276038" } ] } ], "protein_names": [ { "name": "FAST kinase domain-containing protein 1, mitochondrial isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027276038", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027276038" }, { "id": "A0A9J7JKQ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKQ5/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027276038", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027276038" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKQ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKQ5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fastkd1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKQ5", "locus": {} } ], "crossref": [ { "id": "A0A9J7JKQ5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JKQ5", "database": "AlphaFoldDB", "categories": [] }, { "id": "100763353", "url": "https://www.ncbi.nlm.nih.gov/gene/100763353", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR010622", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010622", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013579", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013579", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013584", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013584", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050870", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050870", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763353", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763353", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JKQ5", "url": "https://www.orthodb.org/?gene=A0A9J7JKQ5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21228", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21228", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21228:SF29", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21228:SF29", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06743", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06743", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08368", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08368", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08373", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08373", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027276038", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027276038", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G4B1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4B1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G4B1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4B1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GYX0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GYX0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GYX0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GYX0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H075", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H075", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H075-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H075-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JKQ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKQ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JKQ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKQ5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JSS0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSS0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JSS0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSS0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JU26", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JU26", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JU26-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JU26-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFRLRGISLLSWRAFQLRHFSCEPLVIQMQNCTDEEQIFGLIERNTATLSEHQVGCAFDVLWQFQKQKTNLGRNVECVRNHPQFLTLCNVTANHLETMSDHTLVNVLYIIRQFAVESHHPLVEALVTEAWKRLERFDTNVLSIFSTCLADQHLYFSPLMGKIADIVNRNLETIQDMRALSVLMVSISSLISRCFQERLVNKAELLFDTVDSSKVNTARRILLFLRNIKCSYYPLLERCNKVLTSSVSHLDLESISKILSLYQSLQFHSFEFIEVSRRRLMEMIPGSSGYPESFVRLFATLGPVAGPEIKKQLESTILLMSEELTSQQVLTVLGAMEDMESRNAHLIKKTASVLYKYLDNYKSIELLKVTQALSCLHFQNKEFFVKLRELILSRLEASITPSEICILVSALSMLPFPHFNETAISRIEAVLPQCDSKELSDFVSSLMRWIQNDHKCLANTTRKQLNLLQKLDHWGHHRLQQSNSLDLLWEELKSLKGEWLHESFVEESVAALQCFADEIDCTNVAKIASFLSKTNYLSTLLLDRIASVVVQQIEKIHPFSILAITLPFSVLNYDPPQRDEFFGACVQCLNSYVGTLDPITLVFLGFSLATLEYFPEDLLKKIFNIQFLARLDSQLAILPSTLSARVQFRLMELNRAVCLECPEFQIPWFHDRFCRGHYNKDIDVMNGAQQQIYKMLAEVLGGLRCVKASGLSTYYHTVDFECILDKRKKPLPYRSQSITPGKSPGIYWESDTSRVESSLPPESERCVLRIALEFLDVRAFCSNIPHLKGKSAMKKRHLEILGYRVIQVPYFEWNSMALSTKDARMDYLREHIFGAGKS", "length": 837, "header": "tr|A0A9J7JKQ5-1|A0A9J7JKQ5_CRIGR Isoform 1 of FAST kinase domain-containing protein 1, mitochondrial isoform X1 OS=Cricetulus griseus OX=10029 GN=Fastkd1 PE=4 SV=1 CANONICAL=A0A9J7JKQ5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G4B1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4B1/entry", "sequence": { "sequence": "MSDHTLVNVLYIIRQFAVESHHPLVEALVTEAWKRLERFDTNVLSIFSTCLADQHLYFSPLMGKIADIVNRNLETIQDMRALSVLMVSISSLISRCFQERLVNKAELLFDTVDSSKVNTARRILLFLRNIKCSYYPLLERCNKVLTSSVSHLDLESISKILSLYQSLQFHSFEFIEVSRRRLMEMIPGSSGYPESFVRLFATLGPVAGPEIKKQLESTILLMSEELTSQQVLTVLGAMEDMESRNAHLIKKTASVLYKYLDNYKSIELLKVTQALSCLHFQNKEFFVKLRELILSRLEASITPSEICILVSALSMLPFPHFNETAISRIEAVLPQCDSKELSDFVSSLMRWIQNDHKCLANTTRKQLNLLQKLDHWGHHRLQQSNSLDLLWEELKSLKGEWLHESFVEESVAALQCFADEIDCTNVAKIASFLSKTNYLSTLLLDRIASVVVQQIEKIHPFSILAITLPFSVLNYDPPQRDEFFGACVQCLNSYVGTLDPITLVFLGFSLATLEYFPEDLLKKIFNIQFLARLDSQLAILPSTLSARVQFRLMELNRAVCLECPEFQIPWFHDRFCRGHYNKDIDVMNGAQQQIYKMLAEVLGGLRCVKASGLSTYYHTVDFECILDKRKKPLPYRSQSITPGKSPGIYWESDTSRVESSLPPESERCVLRIALEFLDVRAFCSNIPHLKGKSAMKKRHLEILGYRVIQVPYFEWNSMALSTKDARMDYLREHIFGAGKS", "length": 740, "header": "tr|A0A9J7G4B1-1|A0A9J7JKQ5_CRIGR Computationally mapped isoform of FAST kinase domain-containing protein 1, mitochondrial isoform X1 OS=Cricetulus griseus OX=10029 GN=Fastkd1 PE=4 SV=1 CANONICAL=A0A9J7JKQ5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GYX0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GYX0/entry", "sequence": { "sequence": "MFRLRGISLLSWRAFQLRHFSCEPLVIQMQNCTDEEQIFGLIERNTATLSEHQVGCAFDVLWQFQKQKTNLGRNVECVRNHPQFLTLCNVTANHLETMSDHTLVNVLYIIRQFAVESHHPLVEALVTEAWKRLERFDTNVLSIFSTCLADQHLYFSPLMGKIADIVNRNLETIQDMRALSVLMVSISSLISRCFQERLVNKAELLFDTVDSSKVNTARRILLFLRNIKCSYYPLLERCNKVLTSSVSHLDLESISKILSLYQSLQFHSFEFIEVSRRRLMEMIPGSSGYPESFVRLFATLGPVAGPEIKKQLESTILLMSEELTSQQVLTVLGAMEDMESRNAHLIKKTASVLYKYLDNYKSIELLKVTQALSCLHFQNKEFFVKLRELILSRLEASITPSEICILVSALSMLPFPHFNETAISRIEAVLPQCDSKELSDFVSSLMRWIQNDHKCLANTTRKQLNLLQKLDHWGHHRLQQSNSLDLLWEELKSLKGEWLHESFVEESVAALQCFADEIDCTNVAKIASFLSKTNYLSTLLLDRIASVVVQQIEKIHPFSILAITLPFSVLNYDPPQRDEFFGACVQCLNSYVGTLDPITLVFLGFSLATLEYFPEDLLKKIFNIQFLARLDSQLAILPSTLSARVQFRLMELNRAVCLECPEFQIPWFHDRFCRGHYNKDIDVMNGAQQQIYKMLAEVLGGLRSQSITPGKSPGIYWESDTSRVESSLPPESERIALEFLDVRAFCSNIPHLKGKSAMKKRHLEILGYRVIQVPYFEWNSMALSTKDARMDYLREHIFGAGKS", "length": 803, "header": "tr|A0A9J7GYX0-1|A0A9J7GYX0_CRIGR Computationally mapped isoform of FAST kinase domain-containing protein 1, mitochondrial isoform X4 OS=Cricetulus griseus OX=10029 GN=Fastkd1 PE=4 SV=1 CANONICAL=A0A9J7JKQ5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H075-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H075/entry", "sequence": { "sequence": "MFRLRGISLLSWRAFQLRHFSCEPLVIQMQNCTDEEQIFGLIERNTATLSEHQVGCAFDVLWQFQKQKTNLGRNVECVRNHPQFLTLCNVTANHLETMSDHTLVNVLYIIRQFAVESHHPLVEALVTEAWKRLERFDTNVLSIFSTCLADQHLYFSPLMGKIADIVNRNLETIQDMRALSVLMVSISSLISRCFQERLVNKAELLFDTVDSSKVNTARRILLFLRNIKCSYYPLLERCNKVLTSSVSHLDLESISKILSLYQSLQFHSFEFIEVSRRRLMEMIPGSSGYPESFVRLFATLGPVAGPEIKKQLESTILLMSEELTSQQVLTVLGAMEDMESRNAHLIKKTASVLYKYLDNYKSIELLKVTQALSCLHFQNKEFFVKLRELILSRLEASITPSEICILVSALSMLPFPHFNETAISRIEAVLPQCDSKELSDFVSSLMRWIQNDHKCLANTTRKQLNLLQKLDHWGHHRLQQSNSLDLLWEELKSLKGEWLHESFVEESVAALQCFADEIDCTNVAKIASFLSKTNYLSTLLLDRIASVVVQQIEKIHPFSILAITLPFSVLNYDPPQRDEFFGACVQCLNSYVGTLDPITLVFLGFSLATLEYFPEDLLKKIFNIQFLARLDSQLAILPSTLSARVQFRLMELNRAVCLECPEFQIPWFHDRFCRGHYNKDIDVMNGAQQQIYKMLAEVLGGLRSQSITPGKSPGIYWESDTSRVESSLPPESERCVLRIALEFLDVRAFCSNIPHLKGKSAMKKRHLEILGYRVIQVPYFEWNSMALSTKDARMDYLREHIFGAGKS", "length": 807, "header": "tr|A0A9J7H075-1|A0A9J7H075_CRIGR Computationally mapped isoform of FAST kinase domain-containing protein 1, mitochondrial isoform X3 OS=Cricetulus griseus OX=10029 GN=Fastkd1 PE=4 SV=1 CANONICAL=A0A9J7JKQ5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JKQ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKQ5/entry", "sequence": { "sequence": "MFRLRGISLLSWRAFQLRHFSCEPLVIQMQNCTDEEQIFGLIERNTATLSEHQVGCAFDVLWQFQKQKTNLGRNVECVRNHPQFLTLCNVTANHLETMSDHTLVNVLYIIRQFAVESHHPLVEALVTEAWKRLERFDTNVLSIFSTCLADQHLYFSPLMGKIADIVNRNLETIQDMRALSVLMVSISSLISRCFQERLVNKAELLFDTVDSSKVNTARRILLFLRNIKCSYYPLLERCNKVLTSSVSHLDLESISKILSLYQSLQFHSFEFIEVSRRRLMEMIPGSSGYPESFVRLFATLGPVAGPEIKKQLESTILLMSEELTSQQVLTVLGAMEDMESRNAHLIKKTASVLYKYLDNYKSIELLKVTQALSCLHFQNKEFFVKLRELILSRLEASITPSEICILVSALSMLPFPHFNETAISRIEAVLPQCDSKELSDFVSSLMRWIQNDHKCLANTTRKQLNLLQKLDHWGHHRLQQSNSLDLLWEELKSLKGEWLHESFVEESVAALQCFADEIDCTNVAKIASFLSKTNYLSTLLLDRIASVVVQQIEKIHPFSILAITLPFSVLNYDPPQRDEFFGACVQCLNSYVGTLDPITLVFLGFSLATLEYFPEDLLKKIFNIQFLARLDSQLAILPSTLSARVQFRLMELNRAVCLECPEFQIPWFHDRFCRGHYNKDIDVMNGAQQQIYKMLAEVLGGLRCVKASGLSTYYHTVDFECILDKRKKPLPYRSQSITPGKSPGIYWESDTSRVESSLPPESERCVLRIALEFLDVRAFCSNIPHLKGKSAMKKRHLEILGYRVIQVPYFEWNSMALSTKDARMDYLREHIFGAGKS", "length": 837, "header": "tr|A0A9J7JKQ5-1|A0A9J7JKQ5_CRIGR Isoform 1 of FAST kinase domain-containing protein 1, mitochondrial isoform X1 OS=Cricetulus griseus OX=10029 GN=Fastkd1 PE=4 SV=1 CANONICAL=A0A9J7JKQ5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JSS0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSS0/entry", "sequence": { "sequence": "MFRLRGISLLSWRAFQLRHFSCEPLVIQMQNCTDEEQIFGLIERNTATLSEHQVGCAFDVLWQFQKQKTNLGRNVECVRNHPQFLTLCNVTANHLETMSDHTLVNVLYIIRQFAVESHHPLVEALVTEAWKRLERFDTNVLSIFSTCLADQHLYFSPLMGKIADIVNRNLETIQDMRALSVLMVSISSLISRCFQERLVNKAELLFDTVDSSKVNTARRILLFLRNIKCSYYPLLERCNKVLTSSVSHLDLESISKILSLYQSLQFHSFEFIEVSRRRLMEMIPGSSGYPESFVRLFATLGPVAGPEIKKQLESTILLMSEELTSQQVLTVLGAMEDMESRNAHLIKKTASVLYKYLDNYKSIELLKVTQALSCLHFQNKEFFVKLRELILSRLEASITPSEICILVSALSMLPFPHFNETAISRIEAVLPQCDSKELSDFVSSLMRWIQNDHKCLANTTRKQLNLLQKLDHWGHHRLQQSNSLDLLWEELKSLKGEWLHESFVEESVAALQCFADEIDCTNVAKIASFLSKTNYLSTLLLDRIASVVVQQIEKIHPFSILAITLPFSVLNYDPPQRDEFFGACVQCLNSYVGTLDPITLVFLGFSLATLEYFPEDLLKKIFNIQFLARLDSQLANFECILDKRKKPLPYRSQSITPGKSPGIYWESDTSRVESSLPPESERCVLRIALEFLDVRAFCSNIPHLKGKSAMKKRHLEILGYRVIQVPYFEWNSMALSTKDARMDYLREHIFGAGKS", "length": 755, "header": "tr|A0A9J7JSS0-1|A0A9J7JSS0_CRIGR Computationally mapped isoform of FAST kinase domain-containing protein 1, mitochondrial isoform X5 OS=Cricetulus griseus OX=10029 GN=Fastkd1 PE=4 SV=1 CANONICAL=A0A9J7JKQ5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JU26-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JU26/entry", "sequence": { "sequence": "MFRLRGISLLSWRAFQLRHFSCEPLVIQMQNCTDEEQIFGLIERNTATLSEHQVGCAFDVLWQFQKQKTNLGRNVECVRNHPQFLTLCNVTANHLETMSDHTLVNVLYIIRQFAVESHHPLVEALVTEAWKRLERFDTNVLSIFSTCLADQHLYFSPLMGKIADIVNRNLETIQDMRALSVLMVSISSLISRCFQERLVNKAELLFDTVDSSKVNTARRILLFLRNIKCSYYPLLERCNKVLTSSVSHLDLESISKILSLYQSLQFHSFEFIEVSRRRLMEMIPGSSGYPESFVRLFATLGPVAGPEIKKQLESTILLMSEELTSQQVLTVLGAMEDMESRNAHLIKKTASVLYKYLDNYKSIELLKVTQALSCLHFQNKEFFVKLRELILSRLEASITPSEICILVSALSMLPFPHFNETAISRIEAVLPQCDSKELSDFVSSLMRWIQNDHKCLANTTRKQLNLLQKLDHWGHHRLQQSNSLDLLWEELKSLKGEWLHESFVEESVAALQCFADEIDCTNVAKIASFLSKTNYLSTLLLDRIASVVVQQIEKIHPFSILAITLPFSVLNYDPPQRDEFFGACVQCLNSYVGTLDPITLVFLGFSLATLEYFPEDLLKKIFNIQFLARLDSQLAILPSTLSARVQFRLMELNRAVCLECPEFQIPWFHDRFCRGHYNKDIDVMNGAQQQIYKMLAEVLGGLRCVKASGLSTYYHTVDFECILDKRKKPLPYRSQSITPGKSPGIYWESDTSRVESSLPPESERIALEFLDVRAFCSNIPHLKGKSAMKKRHLEILGYRVIQVPYFEWNSMALSTKDARMDYLREHIFGAGKS", "length": 833, "header": "tr|A0A9J7JU26-1|A0A9J7JU26_CRIGR Computationally mapped isoform of FAST kinase domain-containing protein 1, mitochondrial isoform X2 OS=Cricetulus griseus OX=10029 GN=Fastkd1 PE=4 SV=1 CANONICAL=A0A9J7JKQ5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G4B1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4B1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G4B1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4B1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100763353", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763353", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "mitochondrial RNA processing", "id": "GO:0000963", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000963", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKQ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKQ5" } ], "pmid": "" }, { "name": "regulation of mitochondrial mRNA stability", "id": "GO:0044528", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044528", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKQ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKQ5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKQ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKQ5" } ], "pmid": "" }, { "name": "kinase activity", "id": "GO:0016301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016301", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKQ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKQ5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrial matrix", "id": "GO:0005759", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005759", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKQ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKQ5" } ], "pmid": "" }, { "name": "ribonucleoprotein granule", "id": "GO:0035770", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035770", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKQ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKQ5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 31, "end_pos": 33, "annotation": "n_glycosylation_sequon" }, { "start_pos": 419, "end_pos": 421, "annotation": "n_glycosylation_sequon" }, { "start_pos": 458, "end_pos": 460, "annotation": "n_glycosylation_sequon" }, { "start_pos": 89, "end_pos": 91, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JKQ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKQ5" }, { "id": "PS51286", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51286" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RAP", "eco_id": "ECO_0000259", "start_pos": 769, "end_pos": 829, "start_aa": "Ile", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 31, "end_pos": 33 }, { "start_pos": 419, "end_pos": 421 }, { "start_pos": 458, "end_pos": 460 }, { "start_pos": 89, "end_pos": 91 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JTG9-1", "uniprot_ac": "A0A9J7JTG9", "uniprot_id": "A0A9J7JTG9_CRIGR", "mass": { "chemical_mass": 183565.0, "monoisotopic_mass": 183565.0 }, "refseq": { "ac": "XP_027277083", "name": "protein SOGA1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027277083" }, "gene_names": [ { "name": "Soga1", "type": "recommended", "evidence": [ { "id": "A0A9J7JTG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTG9" } ] }, { "name": "Soga1", "type": "synonym", "evidence": [ { "id": "XP_027277083", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027277083" } ] } ], "protein_names": [ { "name": "Protein SOGA1 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7JTG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTG9/entry#names_and_taxonomy" } ] }, { "name": "protein SOGA1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027277083", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027277083" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027277083", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027277083" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JTG9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTG9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Soga1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTG9", "locus": {} } ], "crossref": [ { "id": "100754944", "url": "https://www.ncbi.nlm.nih.gov/gene/100754944", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027881", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027881", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027882", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027882", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049885", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049885", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100754944", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754944", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JTG9", "url": "https://www.orthodb.org/?gene=A0A9J7JTG9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15742", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15742", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15742:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15742:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF11365", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11365", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14818", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14818", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027277083", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027277083", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G4Y5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4Y5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G4Y5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4Y5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G5N6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5N6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G5N6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5N6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G5S2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5S2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G5S2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5S2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H290", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H290", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H290-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H290-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JTG9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTG9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JTG9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTG9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEAPAGESSARGYCPPPAPAPPTERKKSHRAPSPARPKDVAGWSLAKGRRGTGPGAAAACGAASSARPDKKGRAVTPGARGAGPRVAGVRTGVRAKGRPRPGTGPRPPPPPPSLTDSSSEVSDCASEEARLLGLELALSSDAESAAGGPAGTRTGQPPQPAPSGQQPPRPPASPDEPSVAASSVGSSRLPLSASLAFSDLTEEMLDCGPGGLVRELEELRSENDYLKDEIEELRAEMLEMRDVYMEEDVYQLQELRQQLDQASKTCRILQYRLRKAERRSLRAAQTGQVDDELIRGLEQDVKVSKDISMRLHKELEVVEKKRMRLEEENEGLRQRLIETELAKQVLQTELERPREHSLKKRGTRSLGKTDKKPTAQEDSADLKCQLHFAKEESALMCKKLTKLAKENDSMKEELLKYRSLYGDLDAALSAEELADAPHSRETELKVHLKLVEEEANLLSRRIVELEVENRGLRAEMDDMKDHGGSGGPEARLAFSALGGECGESLAELRRHLQFVEEEAELLRRSSAELEDQNKLLLNELAKYRSEHELDVTLSEDSCSVLSEPSQEELAAAKLQIGELSGKVKKLQYENRVLLSNLQRCDLASCQNTRPMLETDAEAGDSAQCVPAPLGEALEPHTARLCRAREAEALPGLREQAALVSKAIDVLVADANGFSVGLRLCLDNECADLRLHEAPDNSEGPRDAKLIHAILVRLSVLQQELNTFTRKVDVALGNSGKEQSEPFPALPALGSQGPSKEIMLAKDLGSDFQPSDFRDLLEWEPRIREAFRAGDLDSKPDPSRNFRPYRAEDNDSYASEIKELQLVLAEAHDSLRGLQEQLSQERQLRKEEADSFNQKVVQLKEDQQRALLRREFELQSLSLQRRLEQKFWSQEKNILVQESQQFKHNFLLLFMKLRWFLKRWRQGKVLPHEEDDFLEVNSMKELYLLMEEEEMNAQHSDNKACTGDSWTQNTPNEYIKTLADMKVTLKELCWLLRDERRGLTELQQQFAKAKAMWETERAELKGHASQMELKAGKGASERPGPDWKAALQREREEQQHLLAESYSAVMELTRQLQISERHWSQEKLQLVERLQGEKQQVEQQVKELQNRLNQLQKAAEPWVLKHSDLEKQDNSWKETRSEKTHDKEGVSEAELGGTGLKRTKSVSSMSEFESLLDCSPYLAGGDGRNKKLPNSPAFAFVSTEPVEPEKDAKEKPGLSTRDCNRMGTLACQEPAGRQMQRSYTAPDKTGIRVYYSPPVARRLGVPVVHDKEGKILIEPGFLFTTAKPKESAEADGLAESSYSRWLCNFSRQRLDGGSGGNTSGSGPAFPAALHDFEMSGNMSDDMKEITNCVRQAMRSGSLERKVKSTSSQTVGLASVGTQTIRTVSVGLQTDPPRSSLHSKSWSPRSSSLMSVRSKQISSSLDKVHSRIERPCCSPKYGSPKLQRRSVSKLDSTKDRSLWNLHQGKQNGSAWARSTTTRDSPVLRNINDGLSSLFSVVEHSGSTESVWKLGMSEARTKPEPHKYGIVQEFFRNVCGRAPSPTTAAGEESSKKPEPLSPASYHQPEGVARILNKKAVKAGGSEEVRPTMLSQVGKDGVLRDGDGALILSSEDAVCDCSAQSLASCFVRPSRNTIRHSPSKCRLHPSESGWGGEERAAPQ", "length": 1655, "header": "tr|A0A9J7JTG9-1|A0A9J7JTG9_CRIGR Isoform 1 of Protein SOGA1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Soga1 PE=4 SV=1 CANONICAL=A0A9J7JTG9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G4Y5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4Y5/entry", "sequence": { "sequence": "MEAPAGESSARGYCPPPAPAPPTERKKSHRAPSPARPKDVAGWSLAKGRRGTGPGAAAACGAASSARPDKKGRAVTPGARGAGPRVAGVRTGVRAKGRPRPGTGPRPPPPPPSLTDSSSEVSDCASEEARLLGLELALSSDAESAAGGPAGTRTGQPPQPAPSGQQPPRPPASPDEPSVAASSVGSSRLPLSASLAFSDLTEEMLDCGPGGLVRELEELRSENDYLKDEIEELRAEMLEMRDVYMEEDVYQLQELRQQLDQASKTCRILQYRLRKAERRSLRAAQTGQVDDELIRGLEQDVKVSKDISMRLHKELEVVEKKRMRLEEENEGLRQRLIETELAKQVLQTELERPREHSLKKRGTRSLGKTDKKPTAQEDSADLKCQLHFAKEESALMCKKLTKLAKENDSMKEELLKYRSLYGDLDAALSAEELADAPHSRETELKVHLKLVEEEANLLSRRIVELEVENRGLRAEMDDMKDHGGSGGPEARLAFSALGGECGESLAELRRHLQFVEEEAELLRRSSAELEDQNKLLLNELAKYRSEHELDVTLSEDSCSVLSEPSQEELAAAKLQIGELSGKVKKLQYENRVLLSNLQRCDLASCQNTRPMLETDAEAGDSAQCVPAPLGEALEPHTARLCRAREAEALPGLREQAALVSKAIDVLVADANGFSVGLRLCLDNECADLRLHEAPDNSEGPRDAKLIHAILVRLSVLQQELNTFTRKVDVALGNSGKEQSEPFPALPALGSQGPSKEIMLAKDLGSDFQLKEDQQRALLRREFELQSLSLQRRLEQKFWSQEKNILVQESQQFKHNFLLLFMKLRWFLKRWRQGKVLPHEEDDFLEVNSMKELYLLMEEEEMNAQHSDNKACTGDSWTQNTPNEYIKTLADMKVTLKELCWLLRDERRGLTELQQQFAKAKAMWETERAELKGHASQMELKAGKGASERPGPDWKAALQREREEQQHLLAESYSAVMELTRQLQISERHWSQEKLQLVERLQGEKQQVEQQVKELQNRLNQLQKAAEPWVLKHSDLEKQDNSWKETRSEKTHDKEGVSEAELGGTGLKRTKSVSSMSEFESLLDCSPYLAGGDGRNKKLPNSPAFAFVSTEPVEPEKDAKEKPGLSTRDCNRMGTLACQEPAGRQMQRSYTAPDKTGIRVYYSPPVARRLGVPVVHDKEGKILIEPGFLFTTAKPKESAEADGLAESSYSRWLCNFSRQRLDGGSGGNTSGSGPAFPAALHDFEMSGNMSDDMKEITNCVRQAMRSGSLERKVKSTSSQTVGLASVGTQTIRTVSVGLQTDPPRSSLHSKSWSPRSSSLMSVRSKQISSSLDKVHSRIERPCCSPKYGSPKLQRRSVSKLDSTKDRSLWNLHQGKQNGSAWARSTTTRDSPVLRNINDGLSSLFSVVEHSGSTESVWKLGMSEARTKPEPHKYGIVQEFFRNVCGRAPSPTTAAGEESSKKPEPLSPASYHQPEGVARILNKKAVKAGGSEEVRPTMLSQVGKDGVLRDGDGALILSSEDAVCDCSAQSLASCFVRPSRNTIRHSPSKCRLHPSESGWGGEERAAPQ", "length": 1566, "header": "tr|A0A9J7G4Y5-1|A0A9J7JTG9_CRIGR Computationally mapped isoform of Protein SOGA1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Soga1 PE=4 SV=1 CANONICAL=A0A9J7JTG9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G5N6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5N6/entry", "sequence": { "sequence": "MEAPAGESSARGYCPPPAPAPPTERKKSHRAPSPARPKDVAGWSLAKGRRGTGPGAAAACGAASSARPDKKGRAVTPGARGAGPRVAGVRTGVRAKGRPRPGTGPRPPPPPPSLTDSSSEVSDCASEEARLLGLELALSSDAESAAGGPAGTRTGQPPQPAPSGQQPPRPPASPDEPSVAASSVGSSRLPLSASLAFSDLTEEMLDCGPGGLVRELEELRSENDYLKDEIEELRAEMLEMRDVYMEEDVYQLQELRQQLDQASKTCRILQYRLRKAERRSLRAAQTGQVDDELIRGLEQDVKVSKDISMRLHKELEVVEKKRMRLEEENEGLRQRLIETELAKQVLQTELERPREHSLKKRGTRSLGKTDKKPTAQEDSADLKCQLHFAKEESALMCKKLTKLAKENDSMKEELLKYRSLYGDLDAALSAEELADAPHSRETELKVHLKLVEEEANLLSRRIVELEVENRGLRAEMDDMKDHGGSGGPEARLAFSALGGECGESLAELRRHLQFVEEEAELLRRSSAELEDQNKLLLNELAKYRSEHELDVTLSEDSCSVLSEPSQEELAAAKLQIGELSGKVKKLQYENRVLLSNLQRCDLASCQNTRPMLETDAEAGDSAQCVPAPLGEALEPHTARLCRAREAEALPGLREQAALVSKAIDVLVADANGFSVGLRLCLDNECADLRLHEAPDNSEGPRDAKLIHAILVRLSVLQQELNTFTRKVDVALGNSGKEQSEPFPALPALGSQGPSKEIMLAKDLGSDFQIKELQLVLAEAHDSLRGLQEQLSQERQLRKEEADSFNQKVVQLKEDQQRALLRREFELQSLSLQRRLEQKFWSQEKNILVQESQQFKHNFLLLFMKLRWFLKRWRQGKVLPHEEDDFLEVNSMKELYLLMEEEEMNAQHSDNKACTGDSWTQNTPNEYIKTLADMKVTLKELCWLLRDERRGLTELQQQFAKAKAMWETERAELKGHASQMELKAGKGASERPGPDWKAALQREREEQQHLLAESYSAVMELTRQLQISERHWSQEKLQLVERLQGEKQQVEQQVKELQNRLNQLQKAAEPWVLKHSDLEKQDNSWKETRSEKTHDKEGVSEAELGGTGLKRTKSVSSMSEFESLLDCSPYLAGGDGRNKKLPNSPAFAFVSTEPVEPEKDAKEKPGLSTRDCNRMGTLACQEPAGRQMQRSYTAPDKTGIRVYYSPPVARRLGVPVVHDKEGKILIEPGFLFTTAKPKESAEADGLAESSYSRWLCNFSRQRLDGGSGGNTSGSGPAFPAALHDFEMSGNMSDDMKEITNCVRQAMRSGSLERKVKSTSSQTVGLASVGTQTIRTVSVGLQTDPPRSSLHSKSWSPRSSSLMSVRSKQISSSLDKVHSRIERPCCSPKYGSPKLQRRSVSKLDSTKDRSLWNLHQGKQNGSAWARSTTTRDSPVLRNINDGLSSLFSVVEHSGSTESVWKLGMSEARTKPEPHKYGIVQEFFRNVCGRAPSPTTAAGEESSKKPEPLSPASYHQPEGVARILNKKAVKAGGSEEVRPTMLSQVGKDGVLRDGDGALILSSEDAVCDCSAQSLASCFVRPSRNTIRHSPSKCRLHPSESGWGGEERAAPQ", "length": 1608, "header": "tr|A0A9J7G5N6-1|A0A9J7JTG9_CRIGR Computationally mapped isoform of Protein SOGA1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Soga1 PE=4 SV=1 CANONICAL=A0A9J7JTG9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G5S2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5S2/entry", "sequence": { "sequence": "MEAPAGESSARGYCPPPAPAPPTERKKSHRAPSPARPKDVAGWSLAKGRRGTGPGAAAACGAASSARPDKKGRAVTPGARGAGPRVAGVRTGVRAKGRPRPGTGPRPPPPPPSLTDSSSEVSDCASEEARLLGLELALSSDAESAAGGPAGTRTGQPPQPAPSGQQPPRPPASPDEPSVAASSVGSSRLPLSASLAFSDLTEEMLDCGPGGLVRELEELRSENDYLKDEIEELRAEMLEMRDVYMEEDVYQLQELRQQLDQASKTCRILQYRLRKAERRSLRAAQTGQVDDELIRGLEQDVKVSKDISMRLHKELEVVEKKRMRLEEENEGLRQRLIETELAKQVLQTELERPREHSLKKRGTRSLGKTDKKPTAQEDSADLKCQLHFAKEESALMCKKLTKLAKENDSMKEELLKYRSLYGDLDAALSAEELADAPHSRETELKVHLKLVEEEANLLSRRIVELEVENRGLRAEMDDMKDHGGSGGPEARLAFSALGGECGESLAELRRHLQFVEEEAELLRRSSAELEDQNKLLLNELAKYRSEHELDVTLSEDSCSVLSEPSQEELAAAKLQIGELSGKVKKLQYENRVLLSNLQRCDLASCQNTRPMLETDAEAGDSAQCVPAPLGEALEPHTARLCRAREAEALPGLREQAALVSKAIDVLVADANGFSVGLRLCLDNECADLRLHEAPDNSEGPRDAKLIHAILVRLSVLQQELNTFTRKVDVALGNSGKEQSEPFPALPALGSQGPSKEIMLAKDLGSDFQPSDFRDLLEWEPRIREAFRAGDLDSKPDPSRNFRPYRAEDNDSYASELKEDQQRALLRREFELQSLSLQRRLEQKFWSQEKNILVQESQQFKHNFLLLFMKLRWFLKRWRQGKVLPHEEDDFLEVNSMKELYLLMEEEEMNAQHSDNKACTGDSWTQNTPNEYIKTLADMKVTLKELCWLLRDERRGLTELQQQFAKAKAMWETERAELKGHASQMELKAGKGASERPGPDWKAALQREREEQQHLLAESYSAVMELTRQLQISERHWSQEKLQLVERLQGEKQQVEQQVKELQNRLNQLQKAAEPWVLKHSDLEKQDNSWKETRSEKTHDKEGVSEAELGGTGLKRTKSVSSMSEFESLLDCSPYLAGGDGRNKKLPNSPAFAFVSTEPVEPEKDAKEKPGLSTRDCNRMGTLACQEPAGRQMQRSYTAPDKTGIRVYYSPPVARRLGVPVVHDKEGKILIEPGFLFTTAKPKESAEADGLAESSYSRWLCNFSRQRLDGGSGGNTSGSGPAFPAALHDFEMSGNMSDDMKEITNCVRQAMRSGSLERKVKSTSSQTVGLASVGTQTIRTVSVGLQTDPPRSSLHSKSWSPRSSSLMSVRSKQISSSLDKVHSRIERPCCSPKYGSPKLQRRSVSKLDSTKDRSLWNLHQGKQNGSAWARSTTTRDSPVLRNINDGLSSLFSVVEHSGSTESVWKLGMSEARTKPEPHKYGIVQEFFRNVCGRAPSPTTAAGEESSKKPEPLSPASYHQPEGVARILNKKAVKAGGSEEVRPTMLSQVGKDGVLRDGDGALILSSEDAVCDCSAQSLASCFVRPSRNTIRHSPSKCRLHPSESGWGGEERAAPQ", "length": 1613, "header": "tr|A0A9J7G5S2-1|A0A9J7JTG9_CRIGR Computationally mapped isoform of Protein SOGA1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Soga1 PE=4 SV=1 CANONICAL=A0A9J7JTG9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H290-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H290/entry", "sequence": { "sequence": "MEAPAGESSARGYCPPPAPAPPTERKKSHRAPSPARPKDVAGWSLAKGRRGTGPGAAAACGAASSARPDKKGRAVTPGARGAGPRVAGVRTGVRAKGRPRPGTGPRPPPPPPSLTDSSSEVSDCASEEARLLGLELALSSDAESAAGGPAGTRTGQPPQPAPSGQQPPRPPASPDEPSVAASSVGSSRLPLSASLAFSDLTEEMLDCGPGGLVRELEELRSENDYLKDEIEELRAEMLEMRDVYMEEDVYQLQELRQQLDQASKTCRILQYRLRKAERRSLRAAQTGQVDDELIRGLEQDVKHSLKKRGTRSLGKTDKKPTAQEDSADLKCQLHFAKEESALMCKKLTKLAKENDSMKEELLKYRSLYGDLDAALSAEELADAPHSRETELKVHLKLVEEEANLLSRRIVELEVENRGLRAEMDDMKDHGGSGGPEARLAFSALGGECGESLAELRRHLQFVEEEAELLRRSSAELEDQNKLLLNELAKYRSEHELDVTLSEDSCSVLSEPSQEELAAAKLQIGELSGKVKKLQYENRVLLSNLQRCDLASCQNTRPMLETDAEAGDSAQCVPAPLGEALEPHTARLCRAREAEALPGLREQAALVSKAIDVLVADANGFSVGLRLCLDNECADLRLHEAPDNSEGPRDAKLIHAILVRLSVLQQELNTFTRKVDVALGNSGKEQSEPFPALPALGSQGPSKEIMLAKDLGSDFQPSDFRDLLEWEPRIREAFRAGDLDSKPDPSRNFRPYRAEDNDSYASEIKELQLVLAEAHDSLRGLQEQLSQERQLRKEEADSFNQKVVQLKEDQQRALLRREFELQSLSLQRRLEQKFWSQEKNILVQESQQFKHNFLLLFMKLRWFLKRWRQGKVLPHEEDDFLEVNSMKELYLLMEEEEMNAQHSDNKACTGDSWTQNTPNEYIKTLADMKVTLKELCWLLRDERRGLTELQQQFAKAKAMWETERAELKGHASQMELKAGKGASERPGPDWKAALQREREEQQHLLAESYSAVMELTRQLQISERHWSQEKLQLVERLQGEKQQVEQQVKELQNRLNQLQKAAEPWVLKHSDLEKQDNSWKETRSEKTHDKEGVSEAELGGTGLKRTKSVSSMSEFESLLDCSPYLAGGDGRNKKLPNSPAFAFVSTEPVEPEKDAKEKPGLSTRDCNRMGTLACQEPAGRQMQRSYTAPDKTGIRVYYSPPVARRLGVPVVHDKEGKILIEPGFLFTTAKPKESAEADGLAESSYSRWLCNFSRQRLDGGSGGNTSGSGPAFPAALHDFEMSGNMSDDMKEITNCVRQAMRSGSLERKVKSTSSQTVGLASVGTQTIRTVSVGLQTDPPRSSLHSKSWSPRSSSLMSVRSKQISSSLDKVHSRIERPCCSPKYGSPKLQRRSVSKLDSTKDRSLWNLHQGKQNGSAWARSTTTRDSPVLRNINDGLSSLFSVVEHSGSTESVWKLGMSEARTKPEPHKYGIVQEFFRNVCGRAPSPTTAAGEESSKKPEPLSPASYHQPEGVARILNKKAVKAGGSEEVRPTMLSQVGKDGVLRDGDGALILSSEDAVCDCSAQSLASCFVRPSRNTIRHSPSKCRLHPSESGWGGEERAAPQ", "length": 1602, "header": "tr|A0A9J7H290-1|A0A9J7H290_CRIGR Computationally mapped isoform of Protein SOGA1 isoform X4 OS=Cricetulus griseus OX=10029 GN=Soga1 PE=4 SV=1 CANONICAL=A0A9J7JTG9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JTG9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTG9/entry", "sequence": { "sequence": "MEAPAGESSARGYCPPPAPAPPTERKKSHRAPSPARPKDVAGWSLAKGRRGTGPGAAAACGAASSARPDKKGRAVTPGARGAGPRVAGVRTGVRAKGRPRPGTGPRPPPPPPSLTDSSSEVSDCASEEARLLGLELALSSDAESAAGGPAGTRTGQPPQPAPSGQQPPRPPASPDEPSVAASSVGSSRLPLSASLAFSDLTEEMLDCGPGGLVRELEELRSENDYLKDEIEELRAEMLEMRDVYMEEDVYQLQELRQQLDQASKTCRILQYRLRKAERRSLRAAQTGQVDDELIRGLEQDVKVSKDISMRLHKELEVVEKKRMRLEEENEGLRQRLIETELAKQVLQTELERPREHSLKKRGTRSLGKTDKKPTAQEDSADLKCQLHFAKEESALMCKKLTKLAKENDSMKEELLKYRSLYGDLDAALSAEELADAPHSRETELKVHLKLVEEEANLLSRRIVELEVENRGLRAEMDDMKDHGGSGGPEARLAFSALGGECGESLAELRRHLQFVEEEAELLRRSSAELEDQNKLLLNELAKYRSEHELDVTLSEDSCSVLSEPSQEELAAAKLQIGELSGKVKKLQYENRVLLSNLQRCDLASCQNTRPMLETDAEAGDSAQCVPAPLGEALEPHTARLCRAREAEALPGLREQAALVSKAIDVLVADANGFSVGLRLCLDNECADLRLHEAPDNSEGPRDAKLIHAILVRLSVLQQELNTFTRKVDVALGNSGKEQSEPFPALPALGSQGPSKEIMLAKDLGSDFQPSDFRDLLEWEPRIREAFRAGDLDSKPDPSRNFRPYRAEDNDSYASEIKELQLVLAEAHDSLRGLQEQLSQERQLRKEEADSFNQKVVQLKEDQQRALLRREFELQSLSLQRRLEQKFWSQEKNILVQESQQFKHNFLLLFMKLRWFLKRWRQGKVLPHEEDDFLEVNSMKELYLLMEEEEMNAQHSDNKACTGDSWTQNTPNEYIKTLADMKVTLKELCWLLRDERRGLTELQQQFAKAKAMWETERAELKGHASQMELKAGKGASERPGPDWKAALQREREEQQHLLAESYSAVMELTRQLQISERHWSQEKLQLVERLQGEKQQVEQQVKELQNRLNQLQKAAEPWVLKHSDLEKQDNSWKETRSEKTHDKEGVSEAELGGTGLKRTKSVSSMSEFESLLDCSPYLAGGDGRNKKLPNSPAFAFVSTEPVEPEKDAKEKPGLSTRDCNRMGTLACQEPAGRQMQRSYTAPDKTGIRVYYSPPVARRLGVPVVHDKEGKILIEPGFLFTTAKPKESAEADGLAESSYSRWLCNFSRQRLDGGSGGNTSGSGPAFPAALHDFEMSGNMSDDMKEITNCVRQAMRSGSLERKVKSTSSQTVGLASVGTQTIRTVSVGLQTDPPRSSLHSKSWSPRSSSLMSVRSKQISSSLDKVHSRIERPCCSPKYGSPKLQRRSVSKLDSTKDRSLWNLHQGKQNGSAWARSTTTRDSPVLRNINDGLSSLFSVVEHSGSTESVWKLGMSEARTKPEPHKYGIVQEFFRNVCGRAPSPTTAAGEESSKKPEPLSPASYHQPEGVARILNKKAVKAGGSEEVRPTMLSQVGKDGVLRDGDGALILSSEDAVCDCSAQSLASCFVRPSRNTIRHSPSKCRLHPSESGWGGEERAAPQ", "length": 1655, "header": "tr|A0A9J7JTG9-1|A0A9J7JTG9_CRIGR Isoform 1 of Protein SOGA1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Soga1 PE=4 SV=1 CANONICAL=A0A9J7JTG9-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1539, "start_aa": "Thr", "end_pos": 1539, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1539", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 76, "start_aa": "Thr", "end_pos": 76, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr76", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G4Y5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4Y5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G4Y5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4Y5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754944", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754944", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JTG9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTG9" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JTG9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTG9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "regulation of autophagy", "id": "GO:0010506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010506", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JTG9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTG9" } ], "pmid": "" }, { "name": "insulin receptor signaling pathway", "id": "GO:0008286", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008286", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JTG9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTG9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1303, "end_pos": 1305, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1316, "end_pos": 1318, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1336, "end_pos": 1338, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1465, "end_pos": 1467, "annotation": "n_glycosylation_sequon" }, { "start_pos": 407, "end_pos": 409, "annotation": "n_glycosylation_sequon" }, { "start_pos": 809, "end_pos": 811, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JTG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTG9" }, { "id": "PF14818", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14818" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SOGA 1/2-like coiled-coil", "eco_id": "ECO_0000259", "start_pos": 1065, "end_pos": 1117, "start_aa": "Met", "end_aa": "Trp", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7JTG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTG9" }, { "id": "PF11365", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11365" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SOGA coiled-coil", "eco_id": "ECO_0000259", "start_pos": 378, "end_pos": 472, "start_aa": "Asp", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 76, 1539 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1303, "end_pos": 1305 }, { "start_pos": 1316, "end_pos": 1318 }, { "start_pos": 1336, "end_pos": 1338 }, { "start_pos": 1465, "end_pos": 1467 }, { "start_pos": 407, "end_pos": 409 }, { "start_pos": 809, "end_pos": 811 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", 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"table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JTW3-1", "uniprot_ac": "A0A9J7JTW3", "uniprot_id": "A0A9J7JTW3_CRIGR", "mass": { "chemical_mass": 79548.0, "monoisotopic_mass": 79548.0 }, "refseq": { "ac": "XP_016831143", "name": "zinc finger protein 883 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016831143" }, "gene_names": [ { "name": "LOC100773418", "type": "recommended", "evidence": [ { "id": "A0A9J7JTW3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTW3" } ] }, { "name": "LOC100773418", "type": "synonym", "evidence": [ { "id": "XP_016831143", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016831143" } ] } ], "protein_names": [ { "name": "Zinc finger protein 883 isoform X3", "type": "synonym", "evidence": [ { "id": "A0A9J7JTW3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTW3/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 883 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_016831143", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016831143" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 173 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613904.1) and transcript sequence (IACG01087955.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_016831143.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016831143", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016831143" } ] }, { "annotation": "May be involved in transcriptional regulation.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G5I8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5I8#function" }, { "database": "UniProtKB", "id": "ARBA00003767", "url": "https://www.uniprot.org/uniprotkb/ARBA00003767#function" }, { "database": "UniProtKB", "id": "A0A9J7JTW3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTW3#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JTW3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTW3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": 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"https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100773418", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773418", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JTW3", "url": "https://www.orthodb.org/?gene=A0A9J7JTW3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24379", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24379", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24379:SF122", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24379:SF122", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24408", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24408", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24408:SF65", "url": 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CANONICAL=A0A9J7JTW3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JTW3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTW3/entry", "sequence": { "sequence": "MSQPAMESLSFEDIAVYFTWQEWQDLDIAQKLLYRDVMLENYSSLVSLGCCMIKPELILMLEREFGPWRVADTSLWNFPGYYMTRPELNIKFQHGFEPWSASQASLWSLPDVHNVSGLGNQETHLWQVEVTNGITSYEQMVEAELQIQEKMHQGAKPYEYKECVEAIYQNSQHTMNQTSLSYENSFGGEECRKSFYYQSTLTQHQRFYIGEKLYESPQCWEIFPWKSQVSVHAGERRYECEECRKSFHRKANLIRHQRRTHSREKPYECIECGKTFYCKSDVTRHQRRTHSREKPYECVECSKTFYCKSYLIRHQSRTHSREKPYECTDCTKTFYCKSDLTRHQTTHSGEKPFECNECSKTFYYKSDLANHQKTHTDDNPYECKECRKTFCSKSSLNQHHRIHTGEKPYECNVCKKSFNSKSNLTEHQRRTHTREKPYECSECWKSFYCRSELINHQRTHTVERYYECKECRKNFYCKSNLNQHQRTHTGEKPYECKDCNKAFYCKSNLNQHQRTHTGEKPFACKDCSKAFYCKSSLVKHQKIHSGEKPYECEECRKTFFQKSDLTRHQRTHTGEKPYECKDCSKAFYCKSNLNQHRKTHTHEKPYECKECRETFYSKSELTEHQRSHTDEKPYVMFNIDCQLDNIWNNLGDRPLVMPVKDYADS", "length": 665, "header": "tr|A0A9J7JTW3-1|A0A9J7JTW3_CRIGR Isoform 1 of Zinc finger protein 883 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100773418 PE=3 SV=1 CANONICAL=A0A9J7JTW3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G5I8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5I8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100773418", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773418", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JTW3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTW3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JTW3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTW3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JTW3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTW3" } ], "pmid": "" }, { "name": "RNA polymerase II transcription regulatory region sequence-specific DNA binding", "id": "GO:0000977", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000977", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JTW3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTW3" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JTW3", "url": 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{ "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JVN8-1", "uniprot_ac": "A0A9J7JVN8", "uniprot_id": "A0A9J7JVN8_CRIGR", "mass": { "chemical_mass": 139157.0, "monoisotopic_mass": 139157.0 }, "refseq": { "ac": "XP_027277895", "name": "codanin-1 isoform X6", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027277895" }, "gene_names": [ { "name": "Cdan1", "type": "recommended", "evidence": [ { "id": "A0A9J7JVN8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVN8" } ] }, { "name": "Cdan1", "type": "synonym", "evidence": [ { "id": "XP_027277895", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027277895" } ] } ], "protein_names": [ { "name": "Codanin-1 isoform X6", "type": "synonym", "evidence": [ { "id": "A0A9J7JVN8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVN8/entry#names_and_taxonomy" } ] }, { "name": "codanin-1 isoform X6", "type": "synonym", "evidence": [ { "id": "XP_027277895", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027277895" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027277895", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027277895" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JVN8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVN8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cdan1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVN8", "locus": {} } ], "crossref": [ { "id": "A0A9J7JVN8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JVN8", "database": "AlphaFoldDB", "categories": [] }, { "id": "100756905", "url": "https://www.ncbi.nlm.nih.gov/gene/100756905", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR028171", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028171", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040031", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040031", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100756905", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756905", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JVN8", "url": "https://www.orthodb.org/?gene=A0A9J7JVN8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR28678", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28678", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28678:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28678:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15296", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15296", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027277895", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027277895", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G723", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G723", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G723-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G723-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G918", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G918", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G918-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G918-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G923", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G923", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G923-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G923-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H3E9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3E9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H3E9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3E9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JVN8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVN8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JVN8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVN8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K007", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K007", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K007-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K007-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K7J8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7J8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K7J8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7J8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAVLESLLREEVPVAVAVRWVARSTPSSEDSSEVAALSALRPLRKEFVPFLLNFLREQSSRVLPQGPSTPAKTPGASAALPARSGAPARGGRGARSQLFPAAEPPSTAAEAPLARRAGRRRGPGSGPSRERGASGESPPWAGGRKPRGSGSPGSPRQSLSDPPNLSNLEEFPPVGTVPPGPAGRTKPSRRINPTPVSEERSLSKPKTCFTSPPISCVPSSQPSALDTSPWGLGLPPGCRSLQEEREMLRKARSKQLQQSPTPACHIPELGSPIPSRTGNLTAEPADPARVSSRQRLELVAFIYSSCIAENLVPNLFLELFFVLQLLTARRMVATKDGDLESSQGALDSLETPLFQSIHDCVFFAVQVLEHQFQVLSYLDKGTLKLLAENERLLCFSPALQGRLRAAYEGSVAKVSLVIPPSAQAVSFQPETDNRANFSSDRAFHTFKKQRPESLSLANHLRVNFPCPQMPMMCCCWVCNIPSCRELWRLRIGCGDVFYEVLREWEDHHEEPSWDFEKGLGSRIRAMMDQLSAACSHSHFVRLFQKQLLQMCQSPGSTGGSVLGEAPDVLNMLGADKLGRLRQLQERLIAPQSSGGPCPPPTFPGCQGFFRDFIMSASSFHFNQHLMDSLSLKIRELNGLPLPQHEPGDEDGESDVDWQGERRQFAVVLLSLRLLAKFLGFVAFLPYRGPEPPPTRELQDSILALRSQVPPVLDIRALLQQGLWARRAVLTVPWLVEFLSFADHIVPLLDYYRSVFTLLLHLHRSLVLSKENEGEMCFLNKLLLLAVLGWLFQIPTVPEDLFFLDDGQVDALEVDTATSEHGLDSVPVVDQQLLYTCCPYIGELRKLLASWVSGSSGRSGGFVRKITPTTTTSLGTLPPKTSQGLQAQLAQAFFHNQPPSLRRTVEFVAERIGSNCVKHIKATLVADLVNQAESLLQEHLVTQGQQGGDPAQLLEFLCSQLCPHGAQALTQGREFCQRKSPTAVRALLPEETPAAVLSSAENIAVGLATEKACSWLSANITALIRREVKAAVSRILRAQGPEPTARVERRGCSRACEHHAPLPSHLISEIKDVLSLAAGPRDPEEGVSPEHLEQLLNQLGQSLRCRQFLCPTAEQHLAKCSVELASLLVADQIPILGPPTQHKLERGQARRLLHMLLSLWKDDFQGPVPLQLLLSPRNVGLLADTRPREWDLLLFLLRELVEKDLMGQLEIEAYLGSLNEAQWPGDFSEELSTLFRLFLAEPHLLEPQLRACELMQTNRGTVLAQS", "length": 1266, "header": "tr|A0A9J7JVN8-1|A0A9J7JVN8_CRIGR Isoform 1 of Codanin-1 isoform X6 OS=Cricetulus griseus OX=10029 GN=Cdan1 PE=4 SV=1 CANONICAL=A0A9J7JVN8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G723-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G723/entry", "sequence": { "sequence": "MAAVLESLLREEVPVAVAVRWVARSTPSSEDSSEVAALSALRPLRKEFVPFLLNFLREQSSRVLPQGPSTPAKTPGASAALPARSGAPARGGRGARSQLFPAAEPPSTAAEAPLARRAGRRRGPGSGPSRERGASGESPPWAGGRKPRGSGSPGSPRQSLSDPPNLSNLEEFPPVGTVPPGPAGRTKPSRRINPTPVSEERSLSKPKTCFTSPPISCVPSSQPSALDTSPWGLGLPPGCRSLQEEREMLRKARSKQLQQSPTPACHIPELGSPIPSRTGNLTAEPADPARVSSRQRLELVAFIYSSCIAENLVPNLFLELFFVLQLLTARRMVATKDGDLESSQGALDSLETPLFQSIHDCVFFAVQVLEHQFQVLSYLDKGTLKLLAENERLLCFSPALQGRLRAAYEGSVAKVSLVIPPSAQAVSFQPETDNRANFSSDRAFHTFKKQRPESLSLANHLRVNFPCPQMPMMCCCWVCNIPSCRELWRLRIGCGDVFYEVLREWEDHHEEPSWDFEKGLGSRIRAMMDQLSAACSHSHFVRLFQKQLLQMCQSPGSTGGSVLGEAPDVLNMLGADKLGRLRQLQERLIAPQSSGGPCPPPTFPGCQGFFRDFIMSASSFHFNQHLMDSLSLKIRELNGLPLPQHEPGDEDGESDVDWQGERRQFAVVLLSLRLLAKFLGFVAFLPYRGPEPPPTRELQDSILALRSQVPPVLDIRALLQQGLWARRAVLTVPWLVEFLSFADHIVPLLDYYRSVFTLLLHLHRSLVLSKENEGEMCFLNKLLLLAVLGWLFQIPTVPEDLFFLDDGQVDALEVDTATSEHGLDSVPVVDQQLLYTCCPYIGELRKLLASWVSGSSGRSGGFVRKITPTTTTSLGTLPPKTSQGLQAQLAQAFFHNQPPSLRRTVEFVAERIGSNCVKHIKATLVADLVNQAESLLQEHLVTQGQQGGDPAQLLEFLCSQLCPHGAQALTQGREFCQRKSPTAVRALLPEETPAAVLSSAENIAVGLATEKACSWLSANITALIRREVKAAVSRILRAQGPEPTARVERRGCSRA", "length": 1055, "header": "tr|A0A9J7G723-1|A0A9J7JVN8_CRIGR Computationally mapped isoform of Codanin-1 isoform X6 OS=Cricetulus griseus OX=10029 GN=Cdan1 PE=4 SV=1 CANONICAL=A0A9J7JVN8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G918-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G918/entry", "sequence": { "sequence": "MAAVLESLLREEVPVAVAVRWVARSTPSSEDSSEVAALSALRPLRKEFVPFLLNFLREQSSRVLPQGPSTPAKTPGASAALPARSGAPARGGRGARSQLFPAAEPPSTAAEAPLARRAGRRRGPGSGPSRERGASGESPPWAGGRKPRGSGSPGSPRQSLSDPPNLSNLEEFPPVGTVPPGPAGTKPSRRINPTPVSEERSLSKPKTCFTSPPISCVPSSQPSALDTSPWGLGLPPGCRSLQEEREMLRKARSKQLQQSPTPACHIPELGSPIPSRTGNLTAEPADPARVSSRQRLELVAFIYSSCIAENLVPNLFLELFFVLQLLTARRMVATKDGDLESSQGALDSLETPLFQSIHDCVFFAVQVLEHQFQVLSYLDKGTLKLLAENERLLCFSPALQGRLRAAYEGSVAKVSLVIPPSAQAVSFQPETDNRANFSSDRAFHTFKKQRDVFYEVLREWEDHHEEPSWDFEKGLGSRIRAMMDQLSAACSHSHFVRLFQKQLLQMCQSPGSTGGSVLGEAPDVLNMLGADKLGRLRQLQERLIAPQSSGGPCPPPTFPGCQGFFRDFIMSASSFHFNQHLMDSLSLKIRELNGLPLPQHEPGDEDGESDVDWQGERRQFAVVLLSLRLLAKFLGFVAFLPYRGPEPPPTRELQDSILALRSQVPPVLDIRALLQQGLWARRAVLTVPWLVEFLSFADHIVPLLDYYRSVFTLLLHLHRSLVLSKENEGEMCFLNKLLLLAVLGWLFQIPTVPEDLFFLDDGQVDALEVDTATSEHGLDSVPVVDQQLLYTCCPYIGELRKLLASWVSGSSGRSGGFVRKITPTTTTSLGTLPPKTSQGLQAQLAQAFFHNQPPSLRRTVEFVAERIGSNCVKHIKATLVADLVNQAESLLQEHLVTQGQQGGDPAQLLEFLCSQLCPHGAQALTQGREFCQRKSPTAVRALLPEETPAAVLSSAENIAVGLATEKACSWLSANITALIRREVKAAVSRILRAQGPEPTARVERRGCSRACEHHAPLPSHLISEIKDVLSLAAGPRDPEEGVSPEHLEQLLNQLGQSLRCRQFLCPTAEQHLAKCSVELASLLVADQIPILGPPTQHKLERGQARRLLHMLLSLWKDDFQGPVPLQLLLSPRNVGLLADTRPREWDLLLFLLRELVEKDLMGQLEIEAYLGSLNEAQWPGDFSEELSTLFRLFLAEPHLLEPQLRACELMQTNRGTVLAQS", "length": 1221, "header": "tr|A0A9J7G918-1|A0A9J7JVN8_CRIGR Computationally mapped isoform of Codanin-1 isoform X6 OS=Cricetulus griseus OX=10029 GN=Cdan1 PE=4 SV=1 CANONICAL=A0A9J7JVN8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G923-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G923/entry", "sequence": { "sequence": "MAAVLESLLREEVPVAVAVRWVARSTPSSEDSSEVAALSALRPLRKEFVPFLLNFLREQSSRVLPQGPSTPAKTPGASAALPARSGAPARGGRGARSQLFPAAEPPSTAAEAPLARRAGRRRGPGSGPSRERGASGESPPWAGGRKPRGSGSPGSPRQSLSDPPNLSNLEEFPPVGTVPPGPAGRTKPSRRINPTPVSEERSLSKPKTCFTSPPISCVPSSQPSALDTSPWGLGLPPGCRSLQEEREMLRKARSKQLQQSPTPACHIPELGSPIPSRTGNLTAEPADPARVSSRQRLELVAFIYSSCIAENLVPNLFLELFFVLQLLTARRMVATKDGDLESSQGALDSLETPLFQSIHDCVFFAVQVLEHQFQVLSYLDKGTLKLLAENERLLCFSPALQGRLRAAYEGSVAKVSLVIPPSAQAVSFQPETDNRANFSSDRAFHTFKKQRPESLSLANHLRVNFPCPQMPMMCCCWVCNIPSCRELWRLRIGCGDVFYEVLREWEDHHEEPSWDFEKGLGSRIRAMMDQLSAACSHSHFVRLFQKQLLQMCQSPGSTGGSVLGEAPDVLNMLGADKLGRLRQLQERLIAPQSSGGPCPPPTFPGCQGFFRDFIMSASSFHFNQHLMDSLSLKIRELNGLPLPQHEPGDEDGESDVDWQGERRQFAVVLLSLRLLAKFLGFVAFLPYRGPEPPPTRELQDSILALRSQVPPVLDIRALLQQGLWARRAVLTVPWLVEFLSFADHIVPLLDYYRSVFTLLLHLHRSLVLSKENEGEMCFLNKLLLLAVLGWLFQIPTVPEDLFFLDDGQVDALEVDTATSEHGLDSVPVVDQQLLYTCCPYIGELRKLLASWVSGSSGRSGGFVRKITPTTTTSLGTLPPKTSQGLQAQLAQAFFHNQPPSLRRTVEFVAERIGSNCVKHIKATLVADLVNQAESLLQEHLVTQGQQGGDPAQLLEFLCSQLCPHGAQALTQGREFCQRKSPTAVRALLPEETPAAVLSSAENIAVGLATEKACSWLSANITALIRREVKAAVSRILRAQGPEPTARVERRGCSRACEHHAPLPSHLISEIKDVLSLAAGPRDPEEGVSPEHLEQLLNQLGQSLRCRQFLCPTAEQHLAKCSVELASLLVADQIPILGPPTQHKLERGQARRLLHMLLSLWKDDFQGPVPLQLLLSPRNVGLLADTRPREDFSEELSTLFRLFLAEPHLLEPQLRACELMQTNRGTVLAQS", "length": 1230, "header": "tr|A0A9J7G923-1|A0A9J7JVN8_CRIGR Computationally mapped isoform of Codanin-1 isoform X6 OS=Cricetulus griseus OX=10029 GN=Cdan1 PE=4 SV=1 CANONICAL=A0A9J7JVN8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H3E9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3E9/entry", "sequence": { "sequence": "MAAVLESLLREEVPVAVAVRWVARSTPSSEDSSEVAALSALRPLRKEFVPFLLNFLREQSSRVLPQGPSTPAKTPGASAALPARSGAPARGGRGARSQLFPAAEPPSTAAEAPLARRAGRRRGPGSGPSRERGASGESPPWAGGRKPRGSGSPGSPRQSLSDPPNLSNLEEFPPVGTVPPGPAGRTKPSRRINPTPVSEERSLSKPKTCFTSPPISCVPSSQPSALDTSPWGLGLPPGCRSLQEEREMLRKARSKQLQQSPTPACHIPELGSPIPSRTGNLTAEPADPARVSSRQRLELVAFIYSSCIAENLVPNLFLELFFVLQLLTARRMVATKDGDLESSQGALDSLETPLFQSIHDCVFFAVQVLEHQFQVLSYLDKGTLKLLAENERLLCFSPALQGRLRAAYEGSVAKVSLVIPPSAQAVSFQPETDNRANFSSDRAFHTFKKQRPESLSLANHLRVNFPCPQMPMMCCCWVCNIPSCRELWRDVFYEVLREWEDHHEEPSWDFEKGLGSRIRAMMDQLSAACSHSHFVRLFQKQLLQMCQSPGSTGGSVLGEAPDVLNMLGADKLGRLRQLQERLIAPQSSGGPCPPPTFPGCQGFFRDFIMSASSFHFNQHLMDSLSLKIRELNGLPLPQHEPGDEDGESDVDWQGERRQFAVVLLSLRLLAKFLGFVAFLPYRGPEPPPTRELQDSILALRSQVPPVLDIRALLQQGLWARRAVLTVPWLVEFLSFADHIVPLLDYYRSVFTLLLHLHRSLVLSKENEGEMCFLNKLLLLAVLGWLFQIPTVPEDLFFLDDGQVDALEVDTATSEHGLDSVPVVDQQLLYTCCPYIGELRKLLASWVSGSSGRSGGFVRKITPTTTTSLGTLPPKTSQGLQAQLAQAFFHNQPPSLRRTVEFVAERIGSNCVKHIKATLVADLVNQAESLLQEHLVTQGQQGGDPAQLLEFLCSQLCPHGAQALTQGREFCQRKSPTAVRALLPEETPAAVLSSAENIAVGLATEKACSWLSANITALIRREVKAAVSRILRAQGPEPTARVERRGCSRACEHHAPLPSHLISEIKDVLSLAAGPRDPEEGVSPEHLEQLLNQLGQSLRCRQFLCPTAEQHLAKCSVELASLLVADQIPILGPPTQHKLERGQARRLLHMLLSLWKDDFQGPVPLQLLLSPRNVGLLADTRPREWDLLLFLLRELVEKDLMGQLEIEAYLGSLNEAQWPGDFSEELSTLFRLFLAEPHLLEPQLRACELMQTNRGTVLAQS", "length": 1260, "header": "tr|A0A9J7H3E9-1|A0A9J7H3E9_CRIGR Computationally mapped isoform of Codanin-1 isoform X8 OS=Cricetulus griseus OX=10029 GN=Cdan1 PE=4 SV=1 CANONICAL=A0A9J7JVN8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JVN8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVN8/entry", "sequence": { "sequence": "MAAVLESLLREEVPVAVAVRWVARSTPSSEDSSEVAALSALRPLRKEFVPFLLNFLREQSSRVLPQGPSTPAKTPGASAALPARSGAPARGGRGARSQLFPAAEPPSTAAEAPLARRAGRRRGPGSGPSRERGASGESPPWAGGRKPRGSGSPGSPRQSLSDPPNLSNLEEFPPVGTVPPGPAGRTKPSRRINPTPVSEERSLSKPKTCFTSPPISCVPSSQPSALDTSPWGLGLPPGCRSLQEEREMLRKARSKQLQQSPTPACHIPELGSPIPSRTGNLTAEPADPARVSSRQRLELVAFIYSSCIAENLVPNLFLELFFVLQLLTARRMVATKDGDLESSQGALDSLETPLFQSIHDCVFFAVQVLEHQFQVLSYLDKGTLKLLAENERLLCFSPALQGRLRAAYEGSVAKVSLVIPPSAQAVSFQPETDNRANFSSDRAFHTFKKQRPESLSLANHLRVNFPCPQMPMMCCCWVCNIPSCRELWRLRIGCGDVFYEVLREWEDHHEEPSWDFEKGLGSRIRAMMDQLSAACSHSHFVRLFQKQLLQMCQSPGSTGGSVLGEAPDVLNMLGADKLGRLRQLQERLIAPQSSGGPCPPPTFPGCQGFFRDFIMSASSFHFNQHLMDSLSLKIRELNGLPLPQHEPGDEDGESDVDWQGERRQFAVVLLSLRLLAKFLGFVAFLPYRGPEPPPTRELQDSILALRSQVPPVLDIRALLQQGLWARRAVLTVPWLVEFLSFADHIVPLLDYYRSVFTLLLHLHRSLVLSKENEGEMCFLNKLLLLAVLGWLFQIPTVPEDLFFLDDGQVDALEVDTATSEHGLDSVPVVDQQLLYTCCPYIGELRKLLASWVSGSSGRSGGFVRKITPTTTTSLGTLPPKTSQGLQAQLAQAFFHNQPPSLRRTVEFVAERIGSNCVKHIKATLVADLVNQAESLLQEHLVTQGQQGGDPAQLLEFLCSQLCPHGAQALTQGREFCQRKSPTAVRALLPEETPAAVLSSAENIAVGLATEKACSWLSANITALIRREVKAAVSRILRAQGPEPTARVERRGCSRACEHHAPLPSHLISEIKDVLSLAAGPRDPEEGVSPEHLEQLLNQLGQSLRCRQFLCPTAEQHLAKCSVELASLLVADQIPILGPPTQHKLERGQARRLLHMLLSLWKDDFQGPVPLQLLLSPRNVGLLADTRPREWDLLLFLLRELVEKDLMGQLEIEAYLGSLNEAQWPGDFSEELSTLFRLFLAEPHLLEPQLRACELMQTNRGTVLAQS", "length": 1266, "header": "tr|A0A9J7JVN8-1|A0A9J7JVN8_CRIGR Isoform 1 of Codanin-1 isoform X6 OS=Cricetulus griseus OX=10029 GN=Cdan1 PE=4 SV=1 CANONICAL=A0A9J7JVN8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K007-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K007/entry", "sequence": { "sequence": 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"length": 1222, "header": "tr|A0A9J7K007-1|A0A9J7K007_CRIGR Computationally mapped isoform of Codanin-1 isoform X10 OS=Cricetulus griseus OX=10029 GN=Cdan1 PE=4 SV=1 CANONICAL=A0A9J7JVN8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K7J8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7J8/entry", "sequence": { "sequence": "MAAVLESLLREEVPVAVAVRWVARSTPSSEDSSEVAALSALRPLRKEFVPFLLNFLREQSSRVLPQGPSTPAKTPGASAALPARSGAPARGGRGARSQLFPAAEPPSTAAEAPLARRAGRRRGPGSGPSRERGASGESPPWAGGRKPRGSGSPGSPRQSLSDPPNLSNLEEFPPVGTVPPGPAGTKPSRRINPTPVSEERSLSKPKTCFTSPPISCVPSSQPSALDTSPWGLGLPPGCRSLQEEREMLRKARSKQLQQSPTPACHIPELGSPIPSRTGNLTAEPADPARVSSRQRLELVAFIYSSCIAENLVPNLFLELFFVLQLLTARRMVATKDGDLESSQGALDSLETPLFQSIHDCVFFAVQVLEHQFQVLSYLDKGTLKLLAENERLLCFSPALQGRLRAAYEGSVAKVSLVIPPSAQAVSFQPETDNRANFSSDRAFHTFKKQRPESLSLANHLRVNFPCPQMPMMCCCWVCNIPSCRELWRLRIGCGDVFYEVLREWEDHHEEPSWDFEKGLGSRIRAMMDQLSAACSHSHFVRLFQKQLLQMCQSPGSTGGSVLGEAPDVLNMLGADKLGRLRQLQERLIAPQSSGGPCPPPTFPGCQGFFRDFIMSASSFHFNQHLMDSLSLKIRELNGLPLPQHEPGDEDGESDVDWQGERRQFAVVLLSLRLLAKFLGFVAFLPYRGPEPPPTRELQDSILALRSQVPPVLDIRALLQQGLWARRAVLTVPWLVEFLSFADHIVPLLDYYRSVFTLLLHLHRSLVLSKENEGEMCFLNKLLLLAVLGWLFQIPTVPEDLFFLDDGQVDALEVDTATSEHGLDSVPVVDQQLLYTCCPYIGELRKLLASWVSGSSGRSGGFVRKITPTTTTSLGTLPPKTSQGLQAQLAQAFFHNQPPSLRRTVEFVAERIGSNCVKHIKATLVADLVNQAESLLQEHLVTQGQQGGDPAQLLEFLCSQLCPHGAQALTQGREFCQRKSPTAVRALLPEETPAAVLSSAENIAVGLATEKACSWLSANITALIRREVKAAVSRILRAQGPEPTARVERRGCSRACEHHAPLPSHLISEIKDVLSLAAGPRDPEEGVSPEHLEQLLNQLGQSLRCRQFLCPTAEQHLAKCSVELASLLVADQIPILGPPTQHKLERGQARRLLHMLLSLWKDDFQGPVPLQLLLSPRNVGLLADTRPREWDLLLFLLRELVEKDLMGQLEIEAYLGSLNEAQWPGDFSEELSTLFRLFLAEPHLLEPQLRACELMQTNRGTVLAQS", "length": 1265, "header": "tr|A0A9J7K7J8-1|A0A9J7K7J8_CRIGR Computationally mapped isoform of Codanin-1 isoform X7 OS=Cricetulus griseus OX=10029 GN=Cdan1 PE=4 SV=1 CANONICAL=A0A9J7JVN8-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 195, "start_aa": "Thr", "end_pos": 195, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr195", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 262, "start_aa": "Thr", "end_pos": 262, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr262", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G723", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G723" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G723", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G723" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100756905", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756905", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JVN8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVN8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "chromatin organization", "id": "GO:0006325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006325", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JVN8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVN8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1019, "end_pos": 1021, "annotation": "n_glycosylation_sequon" }, { "start_pos": 165, "end_pos": 167, "annotation": "n_glycosylation_sequon" }, { "start_pos": 280, "end_pos": 282, "annotation": "n_glycosylation_sequon" }, { "start_pos": 437, "end_pos": 439, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JVN8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVN8" }, { "id": "PF15296", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15296" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Codanin-1 C-terminal", "eco_id": "ECO_0000259", "start_pos": 824, "end_pos": 938, "start_aa": "Asp", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 195, 262 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1019, "end_pos": 1021 }, { "start_pos": 165, "end_pos": 167 }, { "start_pos": 280, "end_pos": 282 }, { "start_pos": 437, "end_pos": 439 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { 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homology domain-containing 1 protein isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7JSC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSC8/entry#names_and_taxonomy" } ] }, { "name": "bromo adjacent homology domain-containing 1 protein isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027277987", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027277987" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027277987", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027277987" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JSC8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSC8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Bahd1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSC8", "locus": {} } ], "crossref": [ { "id": "A0A9J7JSC8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JSC8", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd04714", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04714", "database": "CDD", "categories": [ "Protein Classification" ] }, 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"PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46576:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46576:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01426", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01426", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027277987", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027277987", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G7D0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7D0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G7D0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7D0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JLY1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLY1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JLY1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLY1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JSC8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSC8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JSC8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSC8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGKLGWRVSMTHTRRKSLPMLSSGPTGRGEPLQMEDSNMDQGAEDVEPGMPDSPGHLTGRRKNYPLRKRSLVPEKPKACKVLLTRLENVAGPRSADEADELPPDLPKPPSPTPSSEDTGLVQPRKRRLASLNAEALNNLLLEREDTSSLAGARRSRGGDPHRSRDRATGAWSFSKKRPRLGDLGEGSRDLSPEPTPDEGARRDGDPAPKRLASLNAAAFLKLSQERELPLRPSRAQGEADGRSTEPLAPKILRPKWAKVNGKNCPKVRQGAGSGETTGPPSWQEQPDEPCPSATPQGPPIQPSHQAPGKALEDPLRPHLPLLMGGQAALKPEPGRPGEESPAPKQELHQPSFPAPQLSPLPLPGNPADYSGLCGGPELTTQGRFYLYCGQDGLQCGGYSPCPMLPEGKLSPVAAPNEGLLMSPSSVPSGIPFQHPPWSSSRYCSSEDTEVNGYSICGVLPLPLTHIGTTCGGCPYKMPFPAEGCRSLGQLEFPLPEAGHPASPAHPLLGCPVPSVPPAAEPIPHLQTPTSEPQTVARACPQSAKPPSGSKSGLRTGSSCRYTVRSKAARRPSHPKQPRVQRPRPRRRRRRRTNGWVPVGAACEKAVYVLDEPEPAIRKSYQAVERHGETIRVRDTVLLKSGPRKTSTPYVAKISALWENPESGELMMSLLWYYRPEHLQGGRSPSMHEPLQNEVFASRHQDQNSVACIEEKCYVLTFAEYCRFCAMAKRRGEGLPSRKTALVPPSSDYSTPPHRTVPEDTDPELVFLCRHVYDFRHGRILKNPQ", "length": 784, "header": "tr|A0A9J7JSC8-1|A0A9J7JSC8_CRIGR Isoform 1 of Bromo adjacent homology domain-containing 1 protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Bahd1 PE=4 SV=1 CANONICAL=A0A9J7JSC8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G7D0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7D0/entry", "sequence": { "sequence": "MGKLGWRVSMTHTRRKSLPMLSSGPTGRGEPLQMEDSNMDQGAEDVEPGMPDSPGHLTGRRKNYPLRKRSLVPEKPKACKVLLTRLENVAGPRSADEADELPPDLPKPPSPTPSSEDTGLVQPRKRRLASLNAEALNNLLLEREDTSSLAGARRSRGGDPHRSRDRATGAWSFSKKRPRLGDLGEGSRDLSPEPTPDEGARRDGDPAPKRLASLNAAAFLKLSQERELPLRPSRAQGEADGRSTEPLAPKILRPKWAKVNGKNCPKVRQGAGSGETTGPPSWQEQPDEPCPSATPQGPPIQPSHQAPGKALEDPLRPHLPLLMGGQAALKPEPGRPGEESPAPKQELHQPSFPAPQLSPLPLPGNPADYSGLCGGPELTTQGRFYLYCGQDGLQCGGYSPCPMLPEGKLSPVAAPNEGLLMSPSSVPSGIPFQHPPWSSSRYCSSEDTEVNGYSICGVLPLPLTHIGTTCGGCPYKMPFPAGCRSLGQLEFPLPEAGHPASPAHPLLGCPVPSVPPAAEPIPHLQTPTSEPQTVARACPQSAKPPSGSKSGLRTGSSCRYTVRSKAARRPSHPKQPRVQRPRPRRRRRRRTNGWVPVGAACEKAVYVLDEPEPAIRKSYQAVERHGETIRVRDTVLLKSGPRKTSTPYVAKISALWENPESGELMMSLLWYYRPEHLQGGRSPSMHEPLQNEVFASRHQDQNSVACIEEKCYVLTFAEYCRFCAMAKRRGEGLPSRKTALVPPSSDYSTPPHRTVPEDTDPELVFLCRHVYDFRHGRILKNPQ", "length": 783, "header": "tr|A0A9J7G7D0-1|A0A9J7JSC8_CRIGR Computationally mapped isoform of Bromo adjacent homology domain-containing 1 protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Bahd1 PE=4 SV=1 CANONICAL=A0A9J7JSC8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JLY1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLY1/entry", "sequence": { "sequence": "MGKLGWRVSMTHTRRKSLPMLSSGPTGRGEPLQMEDSNMDQGAEDVEPGMPDSPGHLTGRRKNYPLRKRSLVPEKPKACKVLLTRLENVAGPRSADEADELPPDLPKPPSPTPSSEDTGLVQPRKRRLASLNAEALNNLLLEREDTSSLAGARRSRGGDPHRSRDRATGAWSFSKKRPRLGDLGEGSRDLSPEPTPDEGARRDGDPAPKRLASLNAAAFLKLSQERELPLRPSRAQGEADGRSTEPLAPKILRPKWAKVNGKNCPKVRQGAGSGETTGPPSWQEQPDEPCPSATPQGPPIQPSHQAPGKALEDPLRPHLPLLMGGQAALKPEPGRPGEESPAPKQELHQPSFPAPQLSPLPLPGNPADYSGLCGGPELTTQGRFYLYCGQDGLQCGGYSPCPMLPEGKLSPVAAPNEGLLMSPSSVPSGIPFQHPPWSSSRYCSSEDTEVNGYSICGVLPLPLTHIGTTCGGCPYKMPFPAEGCRSLGQLEFPLPEAGHPASPAHPLLGCPVPSVPPAAEPIPHLQTPTSEPQTVARACPQSAKPPSGSKSGLRTGSSCRYTVRSKAARRPSHPKQPRVQRPRPRRRRRRRTNGWVPVGAACEKAVYVLDEPEPAIRKSYQAVERHGETIRVRDTVLLKSGPRKTSTPYVAKISALWENPESGELMMSLLWYYRPEHLQGGRSPSMHENEVFASRHQDQNSVACIEEKCYVLTFAEYCRFCAMAKRRGEGLPSRKTALVPPSSDYSTPPHRTVPEDTDPELVFLCRHVYDFRHGRILKNPQ", "length": 781, "header": "tr|A0A9J7JLY1-1|A0A9J7JLY1_CRIGR Computationally mapped isoform of Bromo adjacent homology domain-containing 1 protein isoform X3 OS=Cricetulus griseus OX=10029 GN=Bahd1 PE=4 SV=1 CANONICAL=A0A9J7JSC8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JSC8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSC8/entry", "sequence": { "sequence": "MGKLGWRVSMTHTRRKSLPMLSSGPTGRGEPLQMEDSNMDQGAEDVEPGMPDSPGHLTGRRKNYPLRKRSLVPEKPKACKVLLTRLENVAGPRSADEADELPPDLPKPPSPTPSSEDTGLVQPRKRRLASLNAEALNNLLLEREDTSSLAGARRSRGGDPHRSRDRATGAWSFSKKRPRLGDLGEGSRDLSPEPTPDEGARRDGDPAPKRLASLNAAAFLKLSQERELPLRPSRAQGEADGRSTEPLAPKILRPKWAKVNGKNCPKVRQGAGSGETTGPPSWQEQPDEPCPSATPQGPPIQPSHQAPGKALEDPLRPHLPLLMGGQAALKPEPGRPGEESPAPKQELHQPSFPAPQLSPLPLPGNPADYSGLCGGPELTTQGRFYLYCGQDGLQCGGYSPCPMLPEGKLSPVAAPNEGLLMSPSSVPSGIPFQHPPWSSSRYCSSEDTEVNGYSICGVLPLPLTHIGTTCGGCPYKMPFPAEGCRSLGQLEFPLPEAGHPASPAHPLLGCPVPSVPPAAEPIPHLQTPTSEPQTVARACPQSAKPPSGSKSGLRTGSSCRYTVRSKAARRPSHPKQPRVQRPRPRRRRRRRTNGWVPVGAACEKAVYVLDEPEPAIRKSYQAVERHGETIRVRDTVLLKSGPRKTSTPYVAKISALWENPESGELMMSLLWYYRPEHLQGGRSPSMHEPLQNEVFASRHQDQNSVACIEEKCYVLTFAEYCRFCAMAKRRGEGLPSRKTALVPPSSDYSTPPHRTVPEDTDPELVFLCRHVYDFRHGRILKNPQ", "length": 784, "header": "tr|A0A9J7JSC8-1|A0A9J7JSC8_CRIGR Isoform 1 of Bromo adjacent homology domain-containing 1 protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Bahd1 PE=4 SV=1 CANONICAL=A0A9J7JSC8-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 112, "start_aa": "Thr", "end_pos": 112, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr112", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 195, "start_aa": "Thr", "end_pos": 195, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr195", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7D0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7D0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7D0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7D0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100753540", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753540", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JSC8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSC8" } ], "pmid": "" }, { "name": "transcription cis-regulatory region binding", "id": "GO:0000976", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000976", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JSC8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSC8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "negative regulation of DNA-templated transcription", "id": "GO:0045892", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045892", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JSC8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSC8" } ], "pmid": "" }, { "name": "heterochromatin formation", "id": "GO:0031507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031507", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JSC8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSC8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "chromatin silencing complex", "id": "GO:0005677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005677", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JSC8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSC8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JSC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSC8" }, { "id": "PS51038", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51038" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BAH", "eco_id": "ECO_0000259", "start_pos": 628, "end_pos": 783, "start_aa": "Glu", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 112, 195 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JUR7-1", "uniprot_ac": "A0A9J7JUR7", "uniprot_id": "A0A9J7JUR7_CRIGR", "mass": { "chemical_mass": 44324.0, "monoisotopic_mass": 44324.0 }, "refseq": { "ac": "XP_027240956", "name": "uncharacterized protein C9orf50 homolog isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027240956" }, "gene_names": [ { "name": "CUNH9orf50", "type": "recommended", "evidence": [ { "id": "A0A9J7JUR7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUR7" } ] }, { "name": "CUNH9orf50", "type": "synonym", "evidence": [ { "id": "XP_027240956", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027240956" } ] } ], "protein_names": [ { "name": "Uncharacterized protein C9orf50 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7JUR7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUR7/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein C9orf50 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027240956", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027240956" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003616044.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027240956", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027240956" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JUR7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUR7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH9orf50", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUR7", "locus": {} } ], "crossref": [ { "id": "100772028", "url": "https://www.ncbi.nlm.nih.gov/gene/100772028", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR032756", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032756", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772028", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772028", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WERSCAF", "url": "https://omabrowser.org/oma/group/WERSCAF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7G8B9", "url": "https://www.orthodb.org/?gene=A0A9J7G8B9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JUR7", "url": "https://www.orthodb.org/?gene=A0A9J7JUR7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR36865", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36865", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR36865:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36865:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15737", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15737", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027240956", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027240956", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G7E4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7E4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G7E4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7E4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G7X1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7X1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G7X1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7X1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G8B9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G8B9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G8B9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G8B9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JUR7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUR7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JUR7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUR7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYRRQPAAGTPVYVPKGWTDRAASRRSTPLLPRLFTSDSRTRGSAGAWWQNSDRLPYLSPGVPYGPRSRGTLRTLVLPPLPYSTARGAGARGTRQPAVSVGTLLGQFLPTKFRDFLHHLRTKYTEPQAHPPSAPQYPKGASEHYPGLRNPSCSFYPGLRNPSCSFLPDLWDQPSHSEDSFKKKPTAGLPRGEFITARKANALSREGLRTRRRNCPFRVRFEDETLQDTALRYWERSRAFRQNIFPCEQTALPSMSVSERVLGSVGRWLESLPRALRPRAQDTVAGSSFWNCPRVAAQEPQIYFSEDANMSSRLPFIHRATAIRPRGGLRTFLDTPNSVEQGILSWLVINSTQPQTWINPCLKQTRSHYLSLRKWKNNFFLSSVPEASLSTIL", "length": 392, "header": "tr|A0A9J7JUR7-1|A0A9J7JUR7_CRIGR Isoform 1 of Uncharacterized protein C9orf50 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=CUNH9orf50 PE=4 SV=1 CANONICAL=A0A9J7JUR7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G7E4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7E4/entry", "sequence": { "sequence": "MYRRQPAAGTPVYVPKGWTDRAASRRSTPLLPRLFTSDSRTRGSAGAWWQNSDRLPYLSPGVPYGPRSRGTLRTLVLPPLPYSTARGAGARGTRQPAVSVGTLLGQFLPTKFRDFLHHLRTKYTEPQAHPPSAPQYPKGASEHYPGLRNPSCSFYPGLRNPSCSFLPDLWDQPSHSEDSFKKKPTAGLPRGEFITARKANALSREGLRTRRRNCPFRVRFEDETLQDTALRYWERSRAFRQNIFPCEQTALPSMSVSERVLGSVGRWLESLPRALRPRAQDTVAGSSFWNCPRVAAQEPQIYFSEDANMSSRLPFIHRATAIRPRGGLRTFLDTPNSVEQVPLAVPSWASFSL", "length": 353, "header": "tr|A0A9J7G7E4-1|A0A9J7JUR7_CRIGR Computationally mapped isoform of Uncharacterized protein C9orf50 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=CUNH9orf50 PE=4 SV=1 CANONICAL=A0A9J7JUR7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G7X1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7X1/entry", "sequence": { "sequence": "MYRRQPAAGTPVYVPKGWTDRAASRRSTPLLPRLFTSDSRTRGSAGAWWQNSDRLPYLSPGVPYGPRSRGTLRTLVLPPLPYSTARGAGARGTRQPAVSVGTLLGQFLPTKFRDFLHHLRTKYTEPQAHPPSAPQYPKGASEHYPGLRNPSCSFYPGLRNPSCSFLPDLWDQPSHSEDSFKKKPTAGLPRGEFITARKANALSREGLRTRRRNCPFRVRFEDETLQDTALRYWERSRAFRQNIFPCEQTALPSMSVSERVLGSVGRWLESLPRALRPRAQDTVAGSSFWNCPRVAAQEPQIYFSEDANMSSRLPFIHRATAIRPRGGLRTFLDTPNSVEQEPFLPSMMMQSVLNRGRPKGYRLLLPYTNQQQAQR", "length": 375, "header": "tr|A0A9J7G7X1-1|A0A9J7JUR7_CRIGR Computationally mapped isoform of Uncharacterized protein C9orf50 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=CUNH9orf50 PE=4 SV=1 CANONICAL=A0A9J7JUR7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7G8B9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G8B9/entry", "sequence": { "sequence": "MYRRQPAAGTPVYVPKGWTDRAASRRSTPLLPRLFTSDSRTRGSAGAWWQNSDRLPYLSPGVPYGPRSRGTLRTLVLPPLPYSTARGAGARGTRQPAVSVGTLLGQFLPTKFRDFLHHLRTKYTEPQAHPPSAPQYPKGASEHYPGLRNPSCSFYPGLRNPSCSFLPDLWDQPSHSEDSFKKKPTAGLPRGEFITARKANALSREGLRTRRRNCPFRVRFEDETLQDTALRYWERSRAFRQNIFPCEQTALPSMSVSERVLGSVGRWLESLPRALRPRAQDTVAGSSFWNCPRVAAQEPQIYFSEDANMSSRLPFIHRATAIRPRGGLRTFLDTPNSVEQEPFLPSMMMQSVLNRGRPKGYRLLLPYTNQQQAQREYFPGW", "length": 381, "header": "tr|A0A9J7G8B9-1|A0A9J7JUR7_CRIGR Computationally mapped isoform of Uncharacterized protein C9orf50 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=CUNH9orf50 PE=4 SV=1 CANONICAL=A0A9J7JUR7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JUR7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUR7/entry", "sequence": { "sequence": "MYRRQPAAGTPVYVPKGWTDRAASRRSTPLLPRLFTSDSRTRGSAGAWWQNSDRLPYLSPGVPYGPRSRGTLRTLVLPPLPYSTARGAGARGTRQPAVSVGTLLGQFLPTKFRDFLHHLRTKYTEPQAHPPSAPQYPKGASEHYPGLRNPSCSFYPGLRNPSCSFLPDLWDQPSHSEDSFKKKPTAGLPRGEFITARKANALSREGLRTRRRNCPFRVRFEDETLQDTALRYWERSRAFRQNIFPCEQTALPSMSVSERVLGSVGRWLESLPRALRPRAQDTVAGSSFWNCPRVAAQEPQIYFSEDANMSSRLPFIHRATAIRPRGGLRTFLDTPNSVEQGILSWLVINSTQPQTWINPCLKQTRSHYLSLRKWKNNFFLSSVPEASLSTIL", "length": 392, "header": "tr|A0A9J7JUR7-1|A0A9J7JUR7_CRIGR Isoform 1 of Uncharacterized protein C9orf50 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=CUNH9orf50 PE=4 SV=1 CANONICAL=A0A9J7JUR7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7E4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7E4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7E4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7E4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100772028", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772028", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A2APZ1-1", "protein_name": "RIKEN cDNA 1700001O22 gene", "gene_name": "1700001O22Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFRRQSMEGTPAYKPKGYPDGTTQRRPVKRLPMLLPMLEGRVGRDVDGAWRRDRKSQRLPCGSPESPNARRDRGTARALLLPSLQPSSSAREAGTRGNRQPAARDNPDSLGTLLGKLLPNKFRHFLHHLSAESADPEADPPSAPHNPRSTSNHCLASRSSSCLFLPDLWDKPLHWDNNFKEKTTLGLPRGELARAKKAHPPAGEGSRPRKRYCPFRVRFADETLQDTALRYWERNRAVRQNIFPSEQTALPAVSVSERVLGSVGRWLDSLPRALYPRVQDTVAGSSFWTCPRVSAQEPQLYLSEDSSVSSHLPFISRATIPRPRGGLRTFLDTPNNVDQESFLPSLVLQSVLKQGRPKGYQLLLPSTTNRQQAHR", "length": 375 }, "evidence": [ { "id": "A0A9J7JUR7", "url": "https://omabrowser.org/oma/group/A0A9J7JUR7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q5SZB4-1", "protein_name": "Uncharacterized protein C9orf50", "gene_name": "C9orf50", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFWRRLRPGAQDLAPKGLPGDGDFRRSSDPRLPKLTPPALRAALGARGSGDWRIPGGGAAWWPEGDAKPGVGVGRLPPRLPALLTATRRAVRKRGLLRSLLPPPLLSAGASRESAPRQPGPGERERPRRRVAREDPDFLGAFLGELLPSRFREFLHQLQEKCAEEPEPLTSPAPQHQRGVLEHCPGSPRCPNCSFLPDLWGQSSHLQDSLTKISLQQTPILGPLKGDHSQFTTVRKANHRPHGAQVPRLKAALTHNPSGEGSRPCRQRCPFRVRFADETLQDTTLRYWERRRSVQQSVIVNQKAALPVASERVFGSVGKRLESLPKALYPGAKEETLASSSCWDCAGLSTQKTQGYLSEDTSMNSSLPFCSWKKAAAQRPRSSLRAFLDPHRNLEQESLLPNRVLQSVLKQGCPKGYHLLLASATLQPDKR", "length": 431 }, "evidence": [ { "id": "A0A9J7JUR7", "url": "https://omabrowser.org/oma/group/A0A9J7JUR7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 308, "end_pos": 310, "annotation": "n_glycosylation_sequon" }, { "start_pos": 349, "end_pos": 351, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JUR7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUR7" }, { "id": "PF15737", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15737" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DUF4685", "eco_id": "ECO_0000259", "start_pos": 200, "end_pos": 243, "start_aa": "Asn", "end_aa": "Ile", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 308, "end_pos": 310 }, { "start_pos": 349, "end_pos": 351 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JSS7-1", "uniprot_ac": "A0A9J7JSS7", "uniprot_id": "A0A9J7JSS7_CRIGR", "mass": { "chemical_mass": 45874.0, "monoisotopic_mass": 45874.0 }, "refseq": { "ac": "XP_007652927", "name": "suppressor APC domain-containing protein 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652927" }, "gene_names": [ { "name": "Sapcd2", "type": "recommended", "evidence": [ { "id": "A0A9J7JSS7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSS7" } ] }, { "name": "Sapcd2", "type": "synonym", "evidence": [ { "id": "XP_007652927", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652927" } ] } ], "protein_names": [ { "name": "Suppressor APC domain-containing protein 2 isoform X3", "type": "synonym", "evidence": [ { "id": "A0A9J7JSS7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSS7/entry#names_and_taxonomy" } ] }, { "name": "suppressor APC domain-containing protein 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007652927", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652927" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 175 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003616838.1) and transcript sequence (IACG01033770.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_007652927.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007652927", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652927" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JSS7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSS7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Sapcd2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSS7", "locus": {} } ], "crossref": [ { "id": "A0A9J7JSS7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JSS7", "database": "AlphaFoldDB", "categories": [] }, { "id": "100772508", "url": "https://www.ncbi.nlm.nih.gov/gene/100772508", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026828", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026828", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057953", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057953", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772508", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772508", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JSS7", "url": "https://www.orthodb.org/?gene=A0A9J7JSS7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14907", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14907", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14907:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14907:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF11414", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11414", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25825", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25825", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007652927", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652927", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G870", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G870", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G870-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G870-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JSS7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSS7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JSS7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSS7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAVAAMAERGRLSHAAPTPSTEGLPRAFLQSLRTLFDILDDRQRGYVHLREIESRWQGADARELPCGVLEGLRQVAPASGYLTFERFVAGLRTSLLNANGGPRDQARVAPRSGDQPSLQQRLMFMPADEPRTLLERKPLQPSARPAPAGPSGTSRNPELLCIPAEAAPSPEEPERPLSKTLERSPSADASTGGGAQERIVFTPSLQPLRELIALLKAGAAVCKTQDIGTGETRQAPRARGERRRHTITNGVDCGLLKQMKELDQEQEVLLQGLEMMARGREWYQQQLQRVQERQRRLSQSRAGADFGTAGSPLPLGRLLPKVQEVARCLGELLTAACSGRALPSSSLGPLGPTSPSTPVWQQQTILMLKEQNRLLTQEVTDKSERITQLEQEKSALIKQLFEARALSQQDAGPLDSTFI", "length": 419, "header": "tr|A0A9J7JSS7-1|A0A9J7JSS7_CRIGR Isoform 1 of Suppressor APC domain-containing protein 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Sapcd2 PE=4 SV=1 CANONICAL=A0A9J7JSS7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G870-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G870/entry", "sequence": { "sequence": "MAVAAMAERGRLSHAAPTPSTEGLPRAFLQSLRTLFDILDDRQRGYVHLREIESRWQGADARELPCGVLEGLRQVAPASGYLTFERFVAGLRTSLLNANGGPRDQARVAPRSGDQPSLQQRLMFMPADEPRTLLERKPLQPSARPAPAGPSGTSRNPELLCIPAEAAPSPEEPERPLSKTLERSPSADASAAVCKTQDIGTGETRQAPRARGERRRHTITNGVDCGLLKQMKELDQEQEVLLQGLEMMARGREWYQQQLQRVQERQRRLSQSRAGADFGTAGSPLPLGRLLPKVQEVARCLGELLTAACSGRALPSSSLGPLGPTSPSTPVWQQQTILMLKEQNRLLTQEVTDKSERITQLEQEKSALIKQLFEARALSQQDAGPLDSTFI", "length": 391, "header": "tr|A0A9J7G870-1|A0A9J7JSS7_CRIGR Computationally mapped isoform of Suppressor APC domain-containing protein 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Sapcd2 PE=4 SV=1 CANONICAL=A0A9J7JSS7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JSS7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSS7/entry", "sequence": { "sequence": "MAVAAMAERGRLSHAAPTPSTEGLPRAFLQSLRTLFDILDDRQRGYVHLREIESRWQGADARELPCGVLEGLRQVAPASGYLTFERFVAGLRTSLLNANGGPRDQARVAPRSGDQPSLQQRLMFMPADEPRTLLERKPLQPSARPAPAGPSGTSRNPELLCIPAEAAPSPEEPERPLSKTLERSPSADASTGGGAQERIVFTPSLQPLRELIALLKAGAAVCKTQDIGTGETRQAPRARGERRRHTITNGVDCGLLKQMKELDQEQEVLLQGLEMMARGREWYQQQLQRVQERQRRLSQSRAGADFGTAGSPLPLGRLLPKVQEVARCLGELLTAACSGRALPSSSLGPLGPTSPSTPVWQQQTILMLKEQNRLLTQEVTDKSERITQLEQEKSALIKQLFEARALSQQDAGPLDSTFI", "length": 419, "header": "tr|A0A9J7JSS7-1|A0A9J7JSS7_CRIGR Isoform 1 of Suppressor APC domain-containing protein 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Sapcd2 PE=4 SV=1 CANONICAL=A0A9J7JSS7-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 18, "start_aa": "Thr", "end_pos": 18, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr18", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 353, "start_aa": "Thr", "end_pos": 353, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr353", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G870", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G870" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G870", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G870" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100772508", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772508", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JSS7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSS7" }, { "id": "PF25825", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25825" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Suppressor APC", "eco_id": "ECO_0000259", "start_pos": 23, "end_pos": 98, "start_aa": "Gly", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 18, 353 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JVF4-1", "uniprot_ac": "A0A9J7JVF4", "uniprot_id": "A0A9J7JVF4_CRIGR", "mass": { "chemical_mass": 74894.0, "monoisotopic_mass": 74894.0 }, "refseq": { "ac": "XP_027277582", "name": "leucine zipper putative tumor suppressor 3 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027277582" }, "gene_names": [ { "name": "Lzts3", "type": "recommended", "evidence": [ { "id": "A0A9J7JVF4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVF4" } ] }, { "name": "Lzts3", "type": "synonym", "evidence": [ { "id": "XP_027277582", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027277582" } ] } ], "protein_names": [ { "name": "Leucine zipper putative tumor suppressor 3 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7JVF4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVF4/entry#names_and_taxonomy" } ] }, { "name": "leucine zipper putative tumor suppressor 3 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027277582", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027277582" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027277582", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027277582" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JVF4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVF4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Lzts3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVF4", "locus": {} } ], "crossref": [ { "id": "A0A9J7JVF4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JVF4", "database": "AlphaFoldDB", "categories": [] }, { "id": "100768902", "url": "https://www.ncbi.nlm.nih.gov/gene/100768902", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR045329", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045329", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768902", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768902", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JVF4", "url": "https://www.orthodb.org/?gene=A0A9J7JVF4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19354", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19354", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19354:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19354:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06818", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06818", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027277582", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027277582", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G8L5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G8L5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G8L5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G8L5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JVF4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVF4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JVF4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVF4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPADSASEGPKLEDPPAHHLFGKCPSGSVMAKLETLPVRADPGRDPLLGFAPRPSELGPPDPRLTMGGVGSGVTHAQEFPMKSVGTRTGGGGSQGSFPGPRSSGSGPSRERPGRYPSEDKVLANSLYLNGELRGSDHTDVCGNVVGSSGGSSSSGGSDKAPPQYREANHPPKLLTTSGKLDQCSEPLVRPSAFKPVVPKNFHSMQNLCPPQTNGTPEGRQGPAGLKGGLDKSRTMTPSGGSGGGLSDSGRNSLTSLPTYSSSYSQHLAPLSASTSHINRIGTAGYSSSSSGGGSGYQDLGTSDSGRASSKSGSSSSMGRSGHLGSGEGGSGGLPFAACSPPSPSALIQELEERLWEKEQEVAALRRSLEQSEAAVAQVLEERQKAWERELAELRQGCSGKLQQVARRAQRAQQGLQLQVLRLQQDKKQLQEEAAQLMRQREELEDKVAACQKEQADFLPRMEETKWEVCQKAGEISLLKQQLKDSQADVSQKLSEIVGLRSQLREGRASLREKEEQLLSLRDSFGSKQASLELSEGELPTACFKPALTPVDLAEPQEALASCESDEAKMRRQAGVAAAASLVSVDAEVDAGGEGGTRALRREVGRLQAELAAERRARERQGASFAEERRVWLEEKEKVIEYQKQLQLSYVEMYQRNQQLERRLRERGAAGGASTPTPQHGEEKKAWTPSRLERIESTEI", "length": 700, "header": "tr|A0A9J7JVF4-1|A0A9J7JVF4_CRIGR Isoform 1 of Leucine zipper putative tumor suppressor 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Lzts3 PE=4 SV=1 CANONICAL=A0A9J7JVF4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G8L5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G8L5/entry", "sequence": { "sequence": "MAPADSASEGPKLEDPPAHHLFGKCPSGSVMAKLETLPVRADPGRDPLLGFAPRPSELGPPDPRLTMGGVGSGVTHAQEFPMKSVGTRTGGGGSQGSFPGPRSSGSGPSRERPGRYPSEDKVLANSLYLNGELRGSDHTDVCGNVVGSSGGSSSSGGSDKAPPQYREANHPPKLLTTSGKLDQCSEPLVRPSAFKPVVPKNFHSMQNLCPPQTNGTPEGRQGPAGLKGGLDKSRTMTPSGGSGGGLSDSGRNSLTSLPTYSSSYSQHLAPLSASTSHINRIGTAGYSSSSSGGGSGYQDLGTSDSGRASSKSGSSSSMGRSGHLGSGEGGSGGLPFAACSPPSPSALIQELEERLWEKEQEVAALRRSLEQSEAAVAQVLEERQKAWERELAELRQGCSGKLQQVARRAQRAQQGLQLQVLRLQQDKKQLQEEAAQLMRQREELEDKVCQKAGEISLLKQQLKDSQADVSQKLSEIVGLRSQLREGRASLREKEEQLLSLRDSFGSKQASLELSEGELPTACFKPALTPVDLAEPQEALASCESDEAKMRRQAGVAAAASLVSVDAEVDAGGEGGTRALRREVGRLQAELAAERRARERQGASFAEERRVWLEEKEKVIEYQKQLQLSYVEMYQRNQQLERRLRERGAAGGASTPTPQHGEEKKAWTPSRLERIESTEI", "length": 679, "header": "tr|A0A9J7G8L5-1|A0A9J7JVF4_CRIGR Computationally mapped isoform of Leucine zipper putative tumor suppressor 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Lzts3 PE=4 SV=1 CANONICAL=A0A9J7JVF4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JVF4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVF4/entry", "sequence": { "sequence": "MAPADSASEGPKLEDPPAHHLFGKCPSGSVMAKLETLPVRADPGRDPLLGFAPRPSELGPPDPRLTMGGVGSGVTHAQEFPMKSVGTRTGGGGSQGSFPGPRSSGSGPSRERPGRYPSEDKVLANSLYLNGELRGSDHTDVCGNVVGSSGGSSSSGGSDKAPPQYREANHPPKLLTTSGKLDQCSEPLVRPSAFKPVVPKNFHSMQNLCPPQTNGTPEGRQGPAGLKGGLDKSRTMTPSGGSGGGLSDSGRNSLTSLPTYSSSYSQHLAPLSASTSHINRIGTAGYSSSSSGGGSGYQDLGTSDSGRASSKSGSSSSMGRSGHLGSGEGGSGGLPFAACSPPSPSALIQELEERLWEKEQEVAALRRSLEQSEAAVAQVLEERQKAWERELAELRQGCSGKLQQVARRAQRAQQGLQLQVLRLQQDKKQLQEEAAQLMRQREELEDKVAACQKEQADFLPRMEETKWEVCQKAGEISLLKQQLKDSQADVSQKLSEIVGLRSQLREGRASLREKEEQLLSLRDSFGSKQASLELSEGELPTACFKPALTPVDLAEPQEALASCESDEAKMRRQAGVAAAASLVSVDAEVDAGGEGGTRALRREVGRLQAELAAERRARERQGASFAEERRVWLEEKEKVIEYQKQLQLSYVEMYQRNQQLERRLRERGAAGGASTPTPQHGEEKKAWTPSRLERIESTEI", "length": 700, "header": "tr|A0A9J7JVF4-1|A0A9J7JVF4_CRIGR Isoform 1 of Leucine zipper putative tumor suppressor 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Lzts3 PE=4 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"https://www.uniprot.org/uniprotkb/A0A9J7JUD7" } ] }, { "name": "Pwwp2a", "type": "synonym", "evidence": [ { "id": "XP_027281052", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281052" } ] } ], "protein_names": [ { "name": "PWWP domain-containing protein 2A isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027281052", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281052" }, { "id": "A0A9J7JUD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUD7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027281052", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281052" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JUD7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUD7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Pwwp2a", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUD7", "locus": {} } ], "crossref": [ { "id": "A0A9J7JUD7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JUD7", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd20152", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20152", "database": "CDD", "categories": [ "Protein Classification" ] 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"https://www.ebi.ac.uk/interpro/entry/pfam/PF00855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027281052", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281052", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GA40", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA40", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GA40-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA40-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GAH8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAH8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GAH8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAH8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GB76", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB76", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GB76-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB76-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GBC0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBC0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GBC0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBC0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JUD7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUD7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JUD7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUD7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAVAAEAAATAASPGDGGAGEAEPELEPIPGSEAGTPLPVTATEAAVPDGEADGRQSAPQADEQPPLPPPPRRGELAGSPEAEAKPPEPAAAPAPPPEQPSAAPEQSEDAPRPPPAPALVPPAGGDSAVSQLIPGSEVRVTLDHIIEDALVVSFRLGEKLFSGVLMDLSKRFGPHGIPVTVFPKREYKDKTDAMQLQSNTFQEGIEVKREVNGAVPDNLSPVPPPEHLWTSKPPPLFHEGAPYPPPLFIRDTYNQSIPQPPPRKIKRPKRKMYREEPTSIMNAIKLRPRQVLCDKCKNSVVAEKKEIRKGSSDSSRYEDKKRRNDSVATVNKKLKTDHKVDGKNQNESQRRNAVVRVSNIAHSRGRVVKVSAQANTSKAQLSTKKVLQSKNMDHAKAREVLKIAKEKAQKKQSETSTSKNTHSKVHFTRRYQNPSSGSLPPRVRLKPQRYRNEENDSSLKTGLEKIRSGKLAPKPQSRCTSTRSAGEAPSENQSPSEGLEEAASEVQDTSKVYVPGEQEELQTVGKKGNKSNISVYLTLNQEKSDSSSASVCSVDSMDDLKSSISECSSSESFVFPPGSMHVPSTSSVSSSSKEEKSLSNSLKMKIFSKNVSKCITPDGRTICVGDIVWAKIYGFPWWPARILTITVSRKDNGLLARQEACISWFASPTTSFLALSQLSPFLENFQLRFNKKRKGLYRRAITEAAKAAKQLTPEVRALLTQFET", "length": 725, "header": "tr|A0A9J7JUD7-1|A0A9J7JUD7_CRIGR Isoform 1 of PWWP domain-containing protein 2A isoform X2 OS=Cricetulus griseus OX=10029 GN=Pwwp2a PE=4 SV=1 CANONICAL=A0A9J7JUD7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GA40-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA40/entry", "sequence": { "sequence": "MAAVAAEAAATAASPGDGGAGEAEPELEPIPGSEAGTPLPVTATEAAVPDGEADGRQSAPQADEQPPLPPPPRRGELAGSPEAEAKPPEPAAAPAPPPEQPSAAPEQSEDAPRPPPAPALVPPAGGDSAVSQLIPGSEVRVTLDHIIEDALVVSFRLGEKLFSGVLMDLSKRFGPHGIPVTVFPKREYKDKTDAMQLQSNTFQEGIEVKREVNGAVPDNLSPVPPPEHLWTSKPPPLFHEGAPYPPPLFIRDTYNQSIPQPPPRKIKRPKRKMYREEPTSIMNAIKLRPRQVLCDKCKNSVVAEKKEIRKGSSDSSRYEDKKRRNDSVATVNKKLKTDHKVDGKNQNESQRRNAVVRVSNIAHSRGRVVKVSAQANTSKAQLSTKKVLQSKNMDHAKAREVLKIAKEKAQKKQSETSTSKNTHSKVHFTRRYQNPSSGSLPPRVRLKPQRYRNEENDSSLKTGLEKIRSGKLAPKPQSRCTSTRSAAQRH", "length": 490, "header": "tr|A0A9J7GA40-1|A0A9J7JUD7_CRIGR Computationally mapped isoform of PWWP domain-containing protein 2A isoform X2 OS=Cricetulus griseus OX=10029 GN=Pwwp2a PE=4 SV=1 CANONICAL=A0A9J7JUD7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GAH8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAH8/entry", "sequence": { "sequence": "MAAVAAEAAATAASPGDGGAGEAEPELEPIPGSEAGTPLPVTATEAAVPDGEADGRQSAPQADEQPPLPPPPRRGELAGSPEAEAKPPEPAAAPAPPPEQPSAAPEQSEDAPRPPPAPALVPPAGGDSAVSQLIPGSEVRVTLDHIIEDALVVSFRLGEKLFSGVLMDLSKRFGPHGIPVTVFPKREYKDKTDAMQLQSNTFQEGIEVKREVNGAVPDNLSPVPPPEHLWTSKPPPLFHEGAPYPPPLFIRDTYNQSIPQPPPRKIKRPKRKMYREEPTSIMNAIKLRPRQVLCDKCKNSVVAEKKEIRKGSSDSSRYEDKKRRNDSVATVNKKLKTDHKVDGKNQNESQRRNAVVRVSNIAHSRGRVVKVSAQANTSKAQLSTKKVLQSKNMDHAKAREVLKIAKEKAQKKQSETSTSKNTHSKVHFTRRYQNPSSGSLPPRVRLKPQRYRNEENDSSLKTGLEKIRSGKLAPKPQSRCTSTRSAERKLT", "length": 491, "header": "tr|A0A9J7GAH8-1|A0A9J7JUD7_CRIGR Computationally mapped isoform of PWWP domain-containing protein 2A isoform X2 OS=Cricetulus griseus OX=10029 GN=Pwwp2a PE=4 SV=1 CANONICAL=A0A9J7JUD7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GB76-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB76/entry", "sequence": { "sequence": "MAAVAAEAAATAASPGDGGAGEAEPELEPIPGSEAGTPLPVTATEAAVPDGEADGRQSAPQADEQPPLPPPPRRGELAGSPEAEAKPPEPAAAPAPPPEQPSAAPEQSEDAPRPPPAPALVPPAGGDSAVSQLIPGSEVRVTLDHIIEDALVVSFRLGEKLFSGVLMDLSKRFGPHGIPVTVFPKREYKDKTDAMQLQSNTFQEGIEVKREVNGAVPDNLSPVPPPEHLWTSKPPPLFHEGAPYPPPLFIRDTYNQSIPQPPPRKIKRPKRKMYREEPTSIMNAIKLRPRQVLCDKCKNSVVAEKKEIRKGSSDSSRYEDKKRRNDSVATVNKKLKTDHKVDGKNQNESQRRNAVVRVSNIAHSRGRVVKVSAQANTSKAQLSTKKVLQSKNMDHAKAREVLKIAKEKAQKKQSETSTSKNTHSKVHFTRRYQNPSSGSLPPRVRLKPQRYRNEENDSSLKTGLEKIRSGKLAPKPQSRCTSTRSAGLNKWQLLHQTVTSPAAPLQCLTDHCGFRLGALKLTVKRAAQRH", "length": 530, "header": "tr|A0A9J7GB76-1|A0A9J7JUD7_CRIGR Computationally mapped isoform of PWWP domain-containing protein 2A isoform X2 OS=Cricetulus griseus OX=10029 GN=Pwwp2a PE=4 SV=1 CANONICAL=A0A9J7JUD7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GBC0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBC0/entry", "sequence": { "sequence": "MQLQSNTFQEGIEVKREVNGAVPDNLSPVPPPEHLWTSKPPPLFHEGAPYPPPLFIRDTYNQSIPQPPPRKIKRPKRKMYREEPTSIMNAIKLRPRQVLCDKCKNSVVAEKKEIRKGSSDSSRYEDKKRRNDSVATVNKKLKTDHKVDGKNQNESQRRNAVVRVSNIAHSRGRVVKVSAQANTSKAQLSTKKVLQSKNMDHAKAREVLKIAKEKAQKKQSETSTSKNTHSKVHFTRRYQNPSSGSLPPRVRLKPQRYRNEENDSSLKTGLEKIRSGKLAPKPQSRCTSTRSAGEAPSENQSPSEGLEEAASEVQDTSKVYVPGEQEELQTVGKKGNKSNISVYLTLNQEKSDSSSASVCSVDSMDDLKSSISECSSSESFVFPPGSMHVPSTSSVSSSSKEEKSLSNSLKMKIFSKNVSKCITPDGRTICVGDIVWAKIYGFPWWPARILTITVSRKDNGLLARQEACISWFASPTTSFLALSQLSPFLENFQLRFNKKRKGLYRRAITEAAKAAKQLTPEVRALLTQFET", "length": 531, "header": "tr|A0A9J7GBC0-1|A0A9J7JUD7_CRIGR Computationally mapped isoform of PWWP domain-containing protein 2A isoform X2 OS=Cricetulus griseus OX=10029 GN=Pwwp2a PE=4 SV=1 CANONICAL=A0A9J7JUD7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JUD7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUD7/entry", "sequence": { "sequence": "MAAVAAEAAATAASPGDGGAGEAEPELEPIPGSEAGTPLPVTATEAAVPDGEADGRQSAPQADEQPPLPPPPRRGELAGSPEAEAKPPEPAAAPAPPPEQPSAAPEQSEDAPRPPPAPALVPPAGGDSAVSQLIPGSEVRVTLDHIIEDALVVSFRLGEKLFSGVLMDLSKRFGPHGIPVTVFPKREYKDKTDAMQLQSNTFQEGIEVKREVNGAVPDNLSPVPPPEHLWTSKPPPLFHEGAPYPPPLFIRDTYNQSIPQPPPRKIKRPKRKMYREEPTSIMNAIKLRPRQVLCDKCKNSVVAEKKEIRKGSSDSSRYEDKKRRNDSVATVNKKLKTDHKVDGKNQNESQRRNAVVRVSNIAHSRGRVVKVSAQANTSKAQLSTKKVLQSKNMDHAKAREVLKIAKEKAQKKQSETSTSKNTHSKVHFTRRYQNPSSGSLPPRVRLKPQRYRNEENDSSLKTGLEKIRSGKLAPKPQSRCTSTRSAGEAPSENQSPSEGLEEAASEVQDTSKVYVPGEQEELQTVGKKGNKSNISVYLTLNQEKSDSSSASVCSVDSMDDLKSSISECSSSESFVFPPGSMHVPSTSSVSSSSKEEKSLSNSLKMKIFSKNVSKCITPDGRTICVGDIVWAKIYGFPWWPARILTITVSRKDNGLLARQEACISWFASPTTSFLALSQLSPFLENFQLRFNKKRKGLYRRAITEAAKAAKQLTPEVRALLTQFET", "length": 725, "header": "tr|A0A9J7JUD7-1|A0A9J7JUD7_CRIGR Isoform 1 of PWWP domain-containing protein 2A isoform X2 OS=Cricetulus griseus OX=10029 GN=Pwwp2a PE=4 SV=1 CANONICAL=A0A9J7JUD7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GA40", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA40" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GA40", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA40" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100766797", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766797", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JUD7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUD7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JUD7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUD7" } ], "pmid": "" }, { "name": "chromocenter", "id": "GO:0010369", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010369", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JUD7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUD7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JUD7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUD7" } ], "pmid": "" }, { "name": "positive regulation of transcription elongation by RNA polymerase II", "id": "GO:0032968", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032968", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JUD7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUD7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 219, "end_pos": 221, "annotation": "n_glycosylation_sequon" }, { "start_pos": 255, "end_pos": 257, "annotation": "n_glycosylation_sequon" }, { "start_pos": 325, "end_pos": 327, "annotation": "n_glycosylation_sequon" }, { "start_pos": 347, "end_pos": 349, "annotation": "n_glycosylation_sequon" }, { "start_pos": 376, "end_pos": 378, "annotation": "n_glycosylation_sequon" }, { "start_pos": 456, "end_pos": 458, "annotation": "n_glycosylation_sequon" }, { "start_pos": 493, "end_pos": 495, "annotation": "n_glycosylation_sequon" }, { "start_pos": 530, "end_pos": 532, "annotation": "n_glycosylation_sequon" }, { "start_pos": 533, "end_pos": 535, "annotation": "n_glycosylation_sequon" }, { "start_pos": 611, "end_pos": 613, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JUD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUD7" }, { "id": "PS50812", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50812" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PWWP", "eco_id": "ECO_0000259", "start_pos": 625, "end_pos": 685, "start_aa": "Val", "end_aa": "Asn", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 219, "end_pos": 221 }, { "start_pos": 255, "end_pos": 257 }, { "start_pos": 325, "end_pos": 327 }, { "start_pos": 347, "end_pos": 349 }, { "start_pos": 376, "end_pos": 378 }, { "start_pos": 456, "end_pos": 458 }, { "start_pos": 493, "end_pos": 495 }, { "start_pos": 530, "end_pos": 532 }, { "start_pos": 533, "end_pos": 535 }, { "start_pos": 611, "end_pos": 613 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JWL9-1", "uniprot_ac": "A0A9J7JWL9", "uniprot_id": "A0A9J7JWL9_CRIGR", "mass": { "chemical_mass": 108184.0, "monoisotopic_mass": 108184.0 }, "refseq": { "ac": "XP_027281760", "name": "GPI ethanolamine phosphate transferase 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281760" }, "gene_names": [ { "name": "Pigg", "type": "recommended", "evidence": [ { "id": "A0A9J7JWL9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWL9" } ] }, { "name": "Pigg", "type": "synonym", "evidence": [ { "id": "XP_027281760", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281760" } ] } ], "protein_names": [ { "name": "GPI ethanolamine phosphate transferase 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027281760", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281760" }, { "id": "A0A9J7JWL9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWL9/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027281760", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281760" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JWL9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWL9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Pigg", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWL9", "locus": {} } ], "crossref": [ { "id": "A0A9J7JWL9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JWL9", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd16024", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16024", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100765524", "url": "https://www.ncbi.nlm.nih.gov/gene/100765524", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017850", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017850", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037674", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037674", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039527", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039527", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045687", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045687", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100765524", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765524", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JWL9", "url": "https://www.orthodb.org/?gene=A0A9J7JWL9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23072", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23072", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23072:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23072:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01663", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01663", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF19316", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19316", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027281760", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281760", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GB25", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB25", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GB25-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB25-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GBC2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBC2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GBC2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBC2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GC60", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GC60", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GC60-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GC60-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H0W3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0W3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H0W3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0W3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H2Q9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2Q9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H2Q9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2Q9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JWL9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWL9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JWL9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWL9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRLGSGAFAASCVAIEVIGVAIFIRGFFPAPVRSSAGPEHGVETPAPEPMAGASSNWTKLPSPLFNKVVIVLIDALRDDFVFGSKGVKYMPYTTYLVEKGASHSFVAEAKPPTVTMPRIKALMTGSVPGFVDVIRNLNSPVLLEDNVIRQGKAAGKRMIFYGDETWLKLFPKHFVEYDGTTSFFVSDYIEVDNNVTRHLDKVLQRGDWDVLILHYLGLDHIGHISGPNSPLIGHKLSEMDSILMKIHTSLLSKERETLSPSLLVVCGDHGMSETGSHGASSTEEVSTPLILISSAFERKPGDVRHPKHVQQTDLAATLAIGLGVPIPKDSVGSLLFPVIEGRPMREQLRFLHLNTLQLSKLLQENIPSYEKDPGFEQFKMAERLHGNWVKLHLEENHSDILLGLGTKVLRQYLGALKTLSLSLSTQVAHYDIYSMAVGTVVVLEVLILFLLSTPHVLCRKAELDVPLLSPVFSLLFYMIFLVLSAIHVLVCTSSESSCYLCSLPWLAAGGVMVLVSVLLCAILSALIRMVIDGTLLKKRAAHPGSGWSEVDLLLLLGTVGHVLSLGASSFVEEEHQTWYFLVNTLCLALSQETCRSYFVGDDCEPQHYFQVEEQGCSDILASTLLDSTSYNTPEPVRTGKGASLSEAQGSCKWWTVLASPWLVLICCRLLRSLNQTGVQGAHRPDLSHWLTSSDHKVQLSGLAALSLIVIFMLVQKGCSPVSKAALALGLLGVFCYRAAIGIVLFPWQSDNKVISKGIIEARFVYVFVLGILFTGTKDLLKAQVIATDYKTRTIGLWEIHSGLVLLAALLLRPHNLPVLAFSLLIQTVMTKFIWKPLRHDAAEITVMHYWFGQAFFYFQGNSNNIATIDISAGFVGLDTYLEVPATFLTVFGTYVGPVLWASHLMHFLSSEASNGPALSRACFCYALIGSVPVATYIVLVTSLRYHLFIWSVFSPKLLYEGMHLLITAALCAVFTATDQTRHTRA", "length": 985, "header": "tr|A0A9J7JWL9-1|A0A9J7JWL9_CRIGR Isoform 1 of GPI ethanolamine phosphate transferase 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Pigg PE=3 SV=1 CANONICAL=A0A9J7JWL9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GB25-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB25/entry", "sequence": { "sequence": "MTGSVPGFVDVIRNLNSPVLLEDNVIRQGKAAGKRMIFYGDETWLKLFPKHFVEYDGTTSFFVSDYIEVDNNVTRHLDKVLQRGDWDVLILHYLGLDHIGHISGPNSPLIGHKLSEMDSILMKIHTSLLSKERETLSPSLLVVCGDHGMSETGSHGASSTEEVSTPLILISSAFERKPGDVRHPKHVQQTDLAATLAIGLGVPIPKDSVGSLLFPVIEGRPMREQLRFLHLNTLQLSKLLQENIPSYEKDPGFEQFKMAERLHGNWVKLHLEENHSDILLGLGTKVLRQYLGALKTLSLSLSTQVAHYDIYSMAVGTVVVLEVLILFLLSTPHVLCRKAELDVPLLSPVFSLLFYMIFLVLSAIHVLVCTSSESSCYLCSLPWLAAGGVMVLVSVLLCAILSALIRMVIDGTLLKKRAAHPGSGWSEVDLLLLLGTVGHVLSLGASSFVEEEHQTWYFLVNTLCLALSQETCRSYFVGDDCEPQHYFQVEEQGCSDILASTLLDSTSYNTPEPVRTGKGASLSEAQGSCKWWTVLASPWLVLICCRLLRSLNQTGVQGAHRPDLSHWLTSSDHKVQLSGLAALSLIVIFMLVQKGCSPVSKAALALGLLGVFCYRAAIGIVLFPWQSDNKVISKGIIEARFVYVFVLGILFTGTKDLLKAQVIATDYKTRTIGLWEIHSGLVLLAALLLRPHNLPVLAFSLLIQTVMTKFIWKPLRHDAAEITVMHYWFGQAFFYFQGNSNNIATIDISAGFVGLDTYLEVPATFLTVFGTYVGPVLWASHLMHFLSSEASNGPALSRACFCYALIGSVPVATYIVLVTSLRYHLFIWSVFSPKLLYEGMHLLITAALCAVFTATDQTRHTRA", "length": 863, "header": "tr|A0A9J7GB25-1|A0A9J7JWL9_CRIGR Computationally mapped isoform of GPI ethanolamine phosphate transferase 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Pigg PE=3 SV=1 CANONICAL=A0A9J7JWL9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GBC2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBC2/entry", "sequence": { "sequence": "MRLGSGAFAASCVAIEVIGVAIFIRGFFPAPVRSSAGPEHGVETPAPEPMAGASSNWTKLPSPLFNKVVIVLIDALRDDFVFGSKGVKYMPYTTYLVEKGASHSFVAEAKPPTVTMPRIKALMTGSVPGFVDVIRNLNSPVLLEDNVIRQGKAAGKRMIFYGDETWLKLFPKHFVEYDGTTSFFVSDYIEVDNNVTRHLDKVLQRGDWDVLILHYLGLDHIGHISGPNSPLIGHKLSEMDSILMKIHTSLLSKERETLSPSLLVVCGDHGMSETGSHGASSTEEVSTPLILISSAFERKPGDVRHPKHVQQTDLAATLAIGLGVPIPKDSVGSLLFPVIEGRPMREQLRFLHLNTLQLSKLLQENIPSYEKDPGFEQFKMAERLHGNWVKLHLEENHSDILLGLGTKVLRQYLGALKTLSLSLSTQVAHYDIYSMAVGTVVVLEVLILFLLSTPHVLCRKAELDVPLLSPVFSLLFYMIFLVLSAIHVLVCTSSESSCYLCSLPWLAAGGVMVLVSVLLCAILSALIRMVIDGTLLKKRAAHPGSGWSEVDLLLLLGTVGHVLSLGASSFVEEEHQTWYFLVNTLCLALSQETCRSYFVGDDCEPQHYFQVEEQGCSDILASTLLDSTSYNTPEPVRTGKGASLSEAQGSCKWWTVLASPWLVLICCRLLRSLNQTGVQGAHRPDLSHWLTSSDHKVQLSGLAALSLIVIFMLVQKGCSPVSKAALALGLLGVFCYRAAIGIVLFPWQSDNKVISKGIIEARFVYVFVLGILFTGTKDLLKAQVIATDYKTRTIGLWEIHSGLVLLAALLLRPHNLPVLAFSLLIQTVMTKFIWKPLRHDAAEITVMHYWFGQAFFYFQGNSNNIATIDISAGFVGLDTYLEVPATFLTVFGTYVGPVLWASHLMHFLSSEASK", "length": 914, "header": "tr|A0A9J7GBC2-1|A0A9J7JWL9_CRIGR Computationally mapped isoform of GPI ethanolamine phosphate transferase 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Pigg PE=3 SV=1 CANONICAL=A0A9J7JWL9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GC60-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GC60/entry", "sequence": { "sequence": "MRLGSGAFAASCVAIEVIGVAIFIRGFFPAPVRSSAGPEHGVETPAPEPMAGASSNWTKLPSPLFNKVVIVLIDALRDDFVFGSKGVKYMPYTTYLVEKGASHSFVAEAKPPTVTMPRIKALMTGSVPGFVDVIRNLNSPVLLEDNVIRQGKAAGKRMIFYGDETWLKLFPKHFVEYDGTTSFFVSDYIEVDNNVTRHLDKVLQRGDWDVLILHYLGLDHIGHISGPNSPLIGHKLSEMDSILMKIHTSLLSKERETLSPSLLVVCGDHGMSETGSHGASSTEEVSTPLILISSAFERKPGDVRHPKHVQQTDLAATLAIGLGVPIPKDSVGSLLFPVIEGRPMREQLRFLHLNTLQLSKLLQENIPSYEKDPGFEQFKMAERLHGNWVKLHLEENHSDILLGLGTKVLRQYLGALKTLSLSLSTQVAHYDIYSMAVGTVVVLEVLILFLLSTPHVLCRKAELDVPLLSPVFSLLFYMIFLVLSAIHVLVCTSSESSCYLCSLPWLAAGGVMVLVSVLLCAILSALIRMVIDGTLLKKRAAHPGSGWSEVDLLLLLGTVGHVLSLGASSFVEEEHQTWYFLVNTLCLALSQETCRSYFVGDDCEPQHYFQVEEQGCSDILASTLLDSTSYNTPEPVRTGKGASLSEAQGSCKWWTVLASPWLVLICCRLLRSLNQTGVQGAHRPDLSHWLTRGIIEARFVYVFVLGILFTGTKDLLKAQVIATDYKTRTIGLWEIHSGLVLLAALLLRPHNLPVLAFSLLIQTVMTKFIWKPLRHDAAEITVMHYWFGQAFFYFQGNSNNIATIDISAGFVGLDTYLEVPATFLTVFGTYVGPVLWASHLMHFLSSEASNGPALSRACFCYALIGSVPVATYIVLVTSLRYHLFIWSVFSPKLLYEGMHLLITAALCAVFTATDQTRHTRA", "length": 921, "header": "tr|A0A9J7GC60-1|A0A9J7JWL9_CRIGR Computationally mapped isoform of GPI ethanolamine phosphate transferase 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Pigg PE=3 SV=1 CANONICAL=A0A9J7JWL9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H0W3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0W3/entry", "sequence": { "sequence": "MDSILMKIHTSLLSKERETLSPSLLVVCGDHGMSETGSHGASSTEEVSTPLILISSAFERKPGDVRHPKHVQQTDLAATLAIGLGVPIPKDSVGSLLFPVIEGRPMREQLRFLHLNTLQLSKLLQENIPSYEKDPGFEQFKMAERLHGNWVKLHLEENHSDILLGLGTKVLRQYLGALKTLSLSLSTQVAHYDIYSMAVGTVVVLEVLILFLLSTPHVLCRKAELDVPLLSPVFSLLFYMIFLVLSAIHVLVCTSSESSCYLCSLPWLAAGGVMVLVSVLLCAILSALIRMVIDGTLLKKRAAHPGSGWSEVDLLLLLGTVGHVLSLGASSFVEEEHQTWYFLVNTLCLALSQETCRSYFVGDDCEPQHYFQVEEQGCSDILASTLLDSTSYNTPEPVRTGKGASLSEAQGSCKWWTVLASPWLVLICCRLLRSLNQTGVQGAHRPDLSHWLTSSDHKVQLSGLAALSLIVIFMLVQKGCSPVSKAALALGLLGVFCYRAAIGIVLFPWQSDNKVISKGIIEARFVYVFVLGILFTGTKDLLKAQVIATDYKTRTIGLWEIHSGLVLLAALLLRPHNLPVLAFSLLIQTVMTKFIWKPLRHDAAEITVMHYWFGQAFFYFQGNSNNIATIDISAGFVGLDTYLEVPATFLTVFGTYVGPVLWASHLMHFLSSEASNGPALSRACFCYALIGSVPVATYIVLVTSLRYHLFIWSVFSPKLLYEGMHLLITAALCAVFTATDQTRHTRA", "length": 747, "header": "tr|A0A9J7H0W3-1|A0A9J7H0W3_CRIGR Computationally mapped isoform of GPI ethanolamine phosphate transferase 2 isoform X6 OS=Cricetulus griseus OX=10029 GN=Pigg PE=4 SV=1 CANONICAL=A0A9J7JWL9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H2Q9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2Q9/entry", "sequence": { "sequence": "MRLGSGAFAASCVAIEVIGVAIFIRGFFPAPVRSSAGPEHGVETPAPEPMAGASSNWTKLPSPLFNKVVIVLIDALRDDFVFGSKGVKYMPYTTYLVEKGASHSFVAEAKPPTVTMPRIKALMTGSVPGFVDVIRNLNSPVLLEDNVIRQGKAAGKRMIFYGDETWLKLFPKHFVEYDGTTSFFVSDYIEVDNNVTRHLDKVLQRGDWDVLILHYLGLDHIGHISGPNSPLIGHKLSEMDSILMKIHTSLLSKERETLSPSLLVVCGDHGMSETGSHGASSTEEVSTPLILISSAFERKPGDVRHPKHVQQTDLAATLAIGLGVPIPKDSVGSLLFPVIEGRPMREQLRFLHLNTLQLSKLLQENIPSYEKDPGFEQFKMAERLHGNWVKLHLEENHSDILLGLGTKVLRQYLGALKTLSLSLSTQVAHYDIYSMAVGTVVVLEVLILFLLSTPHVLCRKAELDVPLLSPVFSLLFYMIFLVLSAIHVLVCTSSESSCYLCSLPWLAAGGVMVLVSVLLCAILSALIRMVIDGTLLKKRAAHPGSGWSEVDLLLLLGTVGHVLSLGASSFVEEEHQTWYFLVNTLCLALSQETCRSYFVGDDCEPQHYFQVEEQGCSDILASTLLDSTSYNTPEPVRTGKGASLSEAQGSCKWWTVLASPWLVLICCRLLRSLNQTGVQGAHRPDLSHWLTSSDHKVQLSGLAALSLIVIFMLVQKGCSPVSKAALALGLLGVFCYRAAIGIVLFPWQSDNKVISKGIIEARFVYVFVLGILFTGTKDLLKAQVIATDYKTRTIGLWEIHSGLVLLAALLLRPHNLPVLAFSLLIQTVMTKFIWKPLRHDAAEITVMHYWFGQAFFYFQGNSNNIATIDISAGFVGLDTYLEVPATFLTVFGTYVGPVLWASHLMHFLSSEASKLMSDL", "length": 919, "header": "tr|A0A9J7H2Q9-1|A0A9J7H2Q9_CRIGR Computationally mapped isoform of GPI ethanolamine phosphate transferase 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Pigg PE=3 SV=1 CANONICAL=A0A9J7JWL9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JWL9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWL9/entry", "sequence": { "sequence": "MRLGSGAFAASCVAIEVIGVAIFIRGFFPAPVRSSAGPEHGVETPAPEPMAGASSNWTKLPSPLFNKVVIVLIDALRDDFVFGSKGVKYMPYTTYLVEKGASHSFVAEAKPPTVTMPRIKALMTGSVPGFVDVIRNLNSPVLLEDNVIRQGKAAGKRMIFYGDETWLKLFPKHFVEYDGTTSFFVSDYIEVDNNVTRHLDKVLQRGDWDVLILHYLGLDHIGHISGPNSPLIGHKLSEMDSILMKIHTSLLSKERETLSPSLLVVCGDHGMSETGSHGASSTEEVSTPLILISSAFERKPGDVRHPKHVQQTDLAATLAIGLGVPIPKDSVGSLLFPVIEGRPMREQLRFLHLNTLQLSKLLQENIPSYEKDPGFEQFKMAERLHGNWVKLHLEENHSDILLGLGTKVLRQYLGALKTLSLSLSTQVAHYDIYSMAVGTVVVLEVLILFLLSTPHVLCRKAELDVPLLSPVFSLLFYMIFLVLSAIHVLVCTSSESSCYLCSLPWLAAGGVMVLVSVLLCAILSALIRMVIDGTLLKKRAAHPGSGWSEVDLLLLLGTVGHVLSLGASSFVEEEHQTWYFLVNTLCLALSQETCRSYFVGDDCEPQHYFQVEEQGCSDILASTLLDSTSYNTPEPVRTGKGASLSEAQGSCKWWTVLASPWLVLICCRLLRSLNQTGVQGAHRPDLSHWLTSSDHKVQLSGLAALSLIVIFMLVQKGCSPVSKAALALGLLGVFCYRAAIGIVLFPWQSDNKVISKGIIEARFVYVFVLGILFTGTKDLLKAQVIATDYKTRTIGLWEIHSGLVLLAALLLRPHNLPVLAFSLLIQTVMTKFIWKPLRHDAAEITVMHYWFGQAFFYFQGNSNNIATIDISAGFVGLDTYLEVPATFLTVFGTYVGPVLWASHLMHFLSSEASNGPALSRACFCYALIGSVPVATYIVLVTSLRYHLFIWSVFSPKLLYEGMHLLITAALCAVFTATDQTRHTRA", "length": 985, "header": "tr|A0A9J7JWL9-1|A0A9J7JWL9_CRIGR Isoform 1 of GPI ethanolamine phosphate transferase 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Pigg PE=3 SV=1 CANONICAL=A0A9J7JWL9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GB25", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB25" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GB25", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB25" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100765524", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765524", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "CP2 mannose-ethanolamine phosphotransferase activity", "id": "GO:0051267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051267", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JWL9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWL9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JWL9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWL9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "GPI anchor biosynthetic process", "id": "GO:0006506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006506", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JWL9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWL9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 194, "end_pos": 196, "annotation": "n_glycosylation_sequon" }, { "start_pos": 396, "end_pos": 398, "annotation": "n_glycosylation_sequon" }, { "start_pos": 56, "end_pos": 58, "annotation": "n_glycosylation_sequon" }, { "start_pos": 674, "end_pos": 676, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JWL9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWL9" }, { "id": "PF19316", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19316" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GPI ethanolamine phosphate transferase 2 C-terminal", "eco_id": "ECO_0000259", "start_pos": 657, "end_pos": 969, "start_aa": "Leu", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 194, "end_pos": 196 }, { "start_pos": 396, "end_pos": 398 }, { "start_pos": 56, "end_pos": 58 }, { "start_pos": 674, "end_pos": 676 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JWR7-1", "uniprot_ac": "A0A9J7JWR7", "uniprot_id": "A0A9J7JWR7_CRIGR", "mass": { "chemical_mass": 90896.0, "monoisotopic_mass": 90896.0 }, "refseq": { "ac": "XP_027279614", "name": "cip1-interacting zinc finger protein isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027279614" }, "gene_names": [ { "name": "Ciz1", "type": "recommended", "evidence": [ { "id": "A0A9J7JWR7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWR7" } ] }, { "name": "Ciz1", "type": "synonym", "evidence": [ { "id": "XP_027279614", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027279614" } ] } ], "protein_names": [ { "name": "Cip1-interacting zinc finger protein isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7JWR7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWR7/entry#names_and_taxonomy" } ] }, { "name": "cip1-interacting zinc finger protein isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027279614", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027279614" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027279614", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027279614" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JWR7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWR7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ciz1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWR7", "locus": {} } ], "crossref": [ { "id": "A0A9J7JWR7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JWR7", "database": "AlphaFoldDB", "categories": [] }, { "id": "100753565", "url": "https://www.ncbi.nlm.nih.gov/gene/100753565", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000690", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000690", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003604", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003604", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022755", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022755", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026811", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026811", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056345", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056345", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100753565", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753565", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JWR7", "url": "https://www.orthodb.org/?gene=A0A9J7JWR7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15491", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15491", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15491:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15491:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12171", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12171", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23330", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23330", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027279614", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027279614", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GB74", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB74", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GB74-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB74-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GB78", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB78", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GB78-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB78-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H0J7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0J7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H0J7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0J7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H3G9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3G9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H3G9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3G9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H3X4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3X4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H3X4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3X4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H4K7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4K7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H4K7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4K7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JWR7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWR7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JWR7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWR7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KAH7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAH7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KAH7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAH7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFNQQLQQQQLQQLQQQQLQQQQLQQQQQLLQLQQLLQQSPPQAPLPMPVSRGLPQQSSPQPLLNLQAAHTASLLNGSMLQRALLLQQLQGLDQFAVPPATYDSAGLTMPTAALGNLRAYNMAAPSLAAPSLTPTQMVTPNLQQFFPQATRQSLLGPPPVGVPMNPSQLSHSGRNSQKQARTPTSTTPNLKDSSSQTVPLGDREDPTEGSEEAQELQMDTPEDQDLLVCPNGMANETPVPEPETFEASEPPAKRSKSSEESTEKGPTGQPQAKVQPQIQMTAPKQTQTPDQLPEPPEAQVLPHFQPQVLQIQAQVQPRLQKQAQTQTSPEHLASQQSQVQPQVHPQPQKQAQPQTQPQVPAQAQPQEQPSGQMQEQTSEKTQDQPQTWPQGSAPPPEQASVLACATEPQPSPGAAEAGGEPEEVLPEPAGAQSNEDKSQEASTDGLDVGECEKRAREMLGTWGAGGSLKVTILQSSDSRAFNTTPLTSGPRPGDSTSAAAALASTHSKQTLQFFCYICKAGCSSQQEFQDHMSDAQHQQRLGEMQHSSQTCLLSLLPMPRDILERETEEPPPKRWCNTCQVYYMGDLIQHRRTQEHKIAKQSLRPFCTICNRYFKTPRKFVEHVKSQGHKDKAKELKTLEKETTSPEEDHFITVDAVGCFESDQEEDEEDEEEEEIEAEEEFCKQVRSRDTSLEEWKGPETYSPNTAYGVDFLVPVMGYVCRVCHKFYDSNSGLRLSHCKSLAHFENLQKYKAAKNPSPATRPMSRRCAINARNALTALFTSSSGSGRPLSQPSTQDTAKIPSKVKPGFPSPPLPLRRSTRLKT", "length": 824, "header": "tr|A0A9J7JWR7-1|A0A9J7JWR7_CRIGR Isoform 1 of Cip1-interacting zinc finger protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Ciz1 PE=4 SV=1 CANONICAL=A0A9J7JWR7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GB74-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB74/entry", "sequence": { "sequence": "MFNQQLQQQQLQQLQQQQLQQQQLQQQQQLLQLQQLLQQSPPQAPLPMPVSRGLPQQSSPQPLLNLQAAHTASLLNGSMLQRALLLQQLQGLDQFAVPPATYDSAGLTMPTAALGNLRAYNMAAPSLAAPSLTPTQMVTPNLQQFFPQATRQSLLGPPPVGVPMNPSQLSHSGRNSQKQARTPTSTTPNLKTVPLGDREDPTEGSEEAQELQMDTPEDQDLLVCPNGMANETPVPEPETFEASEPPAKRSKSSEESTEKGPTGQPQAKVQPQIQMTAPKQTQTPDQLPEPPEAQVLPHFQPQVLQIQAQVQPRLQKQAQTQTSPEHLASQQSQVQPQVHPQPQKQAQPQTQPQVPAQAQPQEQPSGQMQEQTSEKTQDQPQTWPQGSAPPPEQASVLACATEPQPSPGAAEAGGEPEEVLPEPAGAQSNEDKSQEASTDGLDVGECEKRAREMLGTWGAGGSLKVTILQSSDSRAFNTTPLTSGPRPGDSTSAAAALASTHSKQTLQFFCYICKAGCSSQQEFQDHMSDAQHQQRLGEMQHSSQTCLLSLLPMPRDILERETEEPPPKRWCNTCQVYYMGDLIQHRRTQEHKIAKQSLRPFCTICNRYFKTPRKFVEHVKSQGHKDKAKELKTLEKETTSPEEDHFITVDAVGCFESDQEEDEEDEEEEEIEAEEEFCKQVRSRDTSLEEWKGPETYSPNTAYGVDFLVPVMGYVCRVCHKFYDSNSGLRLSHCKSLAHFENLQKYKAAKNPSPATRPMSRRCAINARNALTALFTSSSGSGRPLSQPSTQDTAKIPSKVKPGFPSPPLPLRRSTRLKT", "length": 819, "header": "tr|A0A9J7GB74-1|A0A9J7JWR7_CRIGR Computationally mapped isoform of Cip1-interacting zinc finger protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Ciz1 PE=4 SV=1 CANONICAL=A0A9J7JWR7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GB78-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB78/entry", "sequence": { "sequence": "MFNQQLQQQQLQQLQQQQLQQQQLQQQQQLLQLQQLLQQSPPQAPLPMPVSRGLPQQSSPQPLLNLQAAHTASLLNGSMLQRALLLQQLQGLDQFAVPPATYDSAGLTMPTAALGNLRAYNMAAPSLAAPSLTPTQMVTPNLQQFFPQATRQSLLGPPPVGVPMNPSQLSHSGRNSQKQARTPTSTTPNLKDSSSQTVPLGDREDPTEGSEEAQELQMDTPEDQDLLVCPNGMANETPVPEPETFEASEPPAKRSKSSEESTEKGPTGQPQAKVQPQIQMTAPKQTQTPDQLPEPPEAQVLPHFQPQVLQIQAQVQPRLQKQAQTQTSPEHLASQQSQVQPQVHPQPQKQAQPQTQPQVPAQAQPQEQPSGQMQEQTSEKTQDQPQTWPQGSAPPPEQASVLACATEPQPSPGAAEAGGEPEEVLPEPAGAQSNEDKSQEASTDGLDVGECEKRAREMLGTWGAGGSLKVTILQSSDSRAFNTTPLTSGPRPGDSTSAAAALASTHSKQTLQFFCYICKAGCSSQQEFQDHMSDAQHQQRLGEMQHSSQTCLLSLLPMPRDILERETEEPPPKRWCNTCQVYYMGDLIQHRRTQEHKIAKQSLRPFCTICNRYFKTPRKFVEHVKSQGHKDKAKELKTLEKETTSPEEDHFITVDAVGCFESDQEEDEEDEEEEEIEAEEEFCKQVRSRDTSLEEWKGPETYSPNTAYEKVCHPAV", "length": 716, "header": "tr|A0A9J7GB78-1|A0A9J7JWR7_CRIGR Computationally mapped isoform of Cip1-interacting zinc finger protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Ciz1 PE=4 SV=1 CANONICAL=A0A9J7JWR7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H0J7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0J7/entry", "sequence": { "sequence": "MEVRGLQVDGFPNNRLIPLLPSHRGLPQQSSPQPLLNLQAAHTASLLNGSMLQRALLLQQLQGLDQFAVPPATYDSAGLTMPTAALGNLRAYNMAAPSLAAPSLTPTQMVTPNLQQFFPQATRQSLLGPPPVGVPMNPSQLSHSGRNSQKQARTPTSTTPNLKDSSSQTVPLGDREDPTEGSEEAQELQMDTPEDQDLLVCPNGMANETPVPEPETFEASEPPAKRSKSSEESTEKGPTGQPQAKVQPQIQMTAPKQTQTPDQLPEPPEAQVLPHFQPQVLQIQAQVQPRLQKQAQTQTSPEHLASQQSQVQPQVHPQPQKQAQPQTQPQVPAQAQPQEQPSGQMQEQTSEKTQDQPQTWPQGSAPPPEQASVLACATEPQPSPGAAEAGGEPEEVLPEPAGAQSNEDKSQEASTDGLDVGECEKRAREMLGTWGAGGSLKVTILQSSDSRAFNTTPLTSGPRPGDSTSAAAALASTHSKQTLQFFCYICKAGCSSQQEFQDHMSDAQHQQRLGEMQHSSQTCLLSLLPMPRDILERETEEPPPKRWCNTCQVYYMGDLIQHRRTQEHKIAKQSLRPFCTICNRYFKTPRKFVEHVKSQGHKDKAKELKTLEKETTSPEEDHFITVDAVGCFESDQEEDEEDEEEEEIEAEEEFCKQVRSRDTSLEEWKGPETYSPNTAYGVDFLVPVMGYVCRVCHKFYDSNSGLRLSHCKSLAHFENLQKYKAAKNPSPATRPMSRRCAINARNALTALFTSSSGSGRPLSQPSTQDTAKIPSKVKPGFPSPPLPLRRSTRLKT", "length": 796, "header": "tr|A0A9J7H0J7-1|A0A9J7H0J7_CRIGR Computationally mapped isoform of Cip1-interacting zinc finger protein isoform X7 OS=Cricetulus griseus OX=10029 GN=Ciz1 PE=4 SV=1 CANONICAL=A0A9J7JWR7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H3G9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3G9/entry", "sequence": { "sequence": "MFNQQLQQQQLQQLQQQQLQQQQLQQQQQLLQLQQLLQQSPPQAPLPMPVSRGLPQQSSPQPLLNLQAAHTASLLNGSMLQRALLLQQLQGNLRAYNMAAPSLAAPSLTPTQMVTPNLQQFFPQATRQSLLGPPPVGVPMNPSQLSHSGRNSQKQARTPTSTTPNLKDSSSQTVPLGDREDPTEGSEEAQELQMDTPEDQDLLVCPNGMANETPVPEPETFEASEPPAKRSKSSEESTEKGPTGQPQAKVQPQIQMTAPKQTQTPDQLPEPPEAQVLPHFQPQVLQIQAQVQPRLQKQAQTQTSPEHLASQQSQVQPQVHPQPQKQAQPQTQPQVPAQAQPQEQPSGQMQEQTSEKTQDQPQTWPQGSAPPPEQASVLACATEPQPSPGAAEAGGEPEEVLPEPAGAQSNEDKSQEASTDGLDVGECEKRAREMLGTWGAGGSLKVTILQSSDSRAFNTTPLTSGPRPGDSTSAAAALASTHSKQTLQFFCYICKAGCSSQQEFQDHMSDAQHQQRLGEMQHSSQTCLLSLLPMPRDILERETEEPPPKRWCNTCQVYYMGDLIQHRRTQEHKIAKQSLRPFCTICNRYFKTPRKFVEHVKSQGHKDKAKELKTLEKETTSPEEDHFITVDAVGCFESDQEEDEEDEEEEEIEAEEEFCKQVRSRDTSLEEWKGPETYSPNTAYGVDFLVPVMGYVCRVCHKFYDSNSGLRLSHCKSLAHFENLQKYKAAKNPSPATRPMSRRCAINARNALTALFTSSSGSGRPLSQPSTQDTAKIPSKVKPGFPSPPLPLRRSTRLKT", "length": 800, "header": "tr|A0A9J7H3G9-1|A0A9J7H3G9_CRIGR Computationally mapped isoform of Cip1-interacting zinc finger protein isoform X6 OS=Cricetulus griseus OX=10029 GN=Ciz1 PE=4 SV=1 CANONICAL=A0A9J7JWR7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H3X4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3X4/entry", "sequence": { "sequence": "MFNQQLQQQQLQQLQQQQLQQQQLQQQQQLLQLQQLLQQSPPQAPLPMPVSRGLPQQSSPQPLLNLQAAHTASLLNGSMLQRALLLQQLQGLDQFAVPPATYDSAGLTMPTAALGNLRAYNMAAPSLAAPSLTPTQMVTPNLQQFFPQATRQSLLGPPPVGVPMNPSQLSHSGRNSQKQDSSSQTVPLGDREDPTEGSEEAQELQMDTPEDQDLLVCPNGMANETPVPEPETFEASEPPAKRSKSSEESTEKGPTGQPQAKVQPQIQMTAPKQTQTPDQLPEPPEAQVLPHFQPQVLQIQAQVQPRLQKQAQTQTSPEHLASQQSQVQPQVHPQPQKQAQPQTQPQVPAQAQPQEQPSGQMQEQTSEKTQDQPQTWPQGSAPPPEQASVLACATEPQPSPGAAEAGGEPEEVLPEPAGAQSNEDKSQEASTDGLDVGECEKRAREMLGTWGAGGSLKVTILQSSDSRAFNTTPLTSGPRPGDSTSAAAALASTHSKQTLQFFCYICKAGCSSQQEFQDHMSDAQHQQRLGEMQHSSQTCLLSLLPMPRDILERETEEPPPKRWCNTCQVYYMGDLIQHRRTQEHKIAKQSLRPFCTICNRYFKTPRKFVEHVKSQGHKDKAKELKTLEKETTSPEEDHFITVDAVGCFESDQEEDEEDEEEEEIEAEEEFCKQVRSRDTSLEEWKGPETYSPNTAYGVDFLVPVMGYVCRVCHKFYDSNSGLRLSHCKSLAHFENLQKYKAAKNPSPATRPMSRRCAINARNALTALFTSSSGSGRPLSQPSTQDTAKIPSKVKPGFPSPPLPLRRSTRLKT", "length": 812, "header": "tr|A0A9J7H3X4-1|A0A9J7H3X4_CRIGR Computationally mapped isoform of Cip1-interacting zinc finger protein isoform X4 OS=Cricetulus griseus OX=10029 GN=Ciz1 PE=4 SV=1 CANONICAL=A0A9J7JWR7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H4K7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4K7/entry", "sequence": { "sequence": "MEVRGLQVDGFPNNRLIPLLPSHRGLPQQSSPQPLLNLQAAHTASLLNGSMLQRALLLQQLQGNLRAYNMAAPSLAAPSLTPTQMVTPNLQQFFPQATRQSLLGPPPVGVPMNPSQLSHSGRNSQKQARTPTSTTPNLKDSSSQTVPLGDREDPTEGSEEAQELQMDTPEDQDLLVCPNGMANETPVPEPETFEASEPPAKRSKSSEESTEKGPTGQPQAKVQPQIQMTAPKQTQTPDQLPEPPEAQVLPHFQPQVLQIQAQVQPRLQKQAQTQTSPEHLASQQSQVQPQVHPQPQKQAQPQTQPQVPAQAQPQEQPSGQMQEQTSEKTQDQPQTWPQGSAPPPEQASVLACATEPQPSPGAAEAGGEPEEVLPEPAGAQSNEDKSQEASTDGLDVGECEKRAREMLGTWGAGGSLKVTILQSSDSRAFNTTPLTSGPRPGDSTSAAAALASTHSKQTLQFFCYICKAGCSSQQEFQDHMSDAQHQQRLGEMQHSSQTCLLSLLPMPRDILERETEEPPPKRWCNTCQVYYMGDLIQHRRTQEHKIAKQSLRPFCTICNRYFKTPRKFVEHVKSQGHKDKAKELKTLEKETTSPEEDHFITVDAVGCFESDQEEDEEDEEEEEIEAEEEFCKQVRSRDTSLEEWKGPETYSPNTAYGVDFLVPVMGYVCRVCHKFYDSNSGLRLSHCKSLAHFENLQKYKAAKNPSPATRPMSRRCAINARNALTALFTSSSGSGRPLSQPSTQDTAKIPSKVKPGFPSPPLPLRRSTRLKT", "length": 772, "header": "tr|A0A9J7H4K7-1|A0A9J7H4K7_CRIGR Computationally mapped isoform of Cip1-interacting zinc finger protein isoform X8 OS=Cricetulus griseus OX=10029 GN=Ciz1 PE=4 SV=1 CANONICAL=A0A9J7JWR7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JWR7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWR7/entry", "sequence": { "sequence": "MFNQQLQQQQLQQLQQQQLQQQQLQQQQQLLQLQQLLQQSPPQAPLPMPVSRGLPQQSSPQPLLNLQAAHTASLLNGSMLQRALLLQQLQGLDQFAVPPATYDSAGLTMPTAALGNLRAYNMAAPSLAAPSLTPTQMVTPNLQQFFPQATRQSLLGPPPVGVPMNPSQLSHSGRNSQKQARTPTSTTPNLKDSSSQTVPLGDREDPTEGSEEAQELQMDTPEDQDLLVCPNGMANETPVPEPETFEASEPPAKRSKSSEESTEKGPTGQPQAKVQPQIQMTAPKQTQTPDQLPEPPEAQVLPHFQPQVLQIQAQVQPRLQKQAQTQTSPEHLASQQSQVQPQVHPQPQKQAQPQTQPQVPAQAQPQEQPSGQMQEQTSEKTQDQPQTWPQGSAPPPEQASVLACATEPQPSPGAAEAGGEPEEVLPEPAGAQSNEDKSQEASTDGLDVGECEKRAREMLGTWGAGGSLKVTILQSSDSRAFNTTPLTSGPRPGDSTSAAAALASTHSKQTLQFFCYICKAGCSSQQEFQDHMSDAQHQQRLGEMQHSSQTCLLSLLPMPRDILERETEEPPPKRWCNTCQVYYMGDLIQHRRTQEHKIAKQSLRPFCTICNRYFKTPRKFVEHVKSQGHKDKAKELKTLEKETTSPEEDHFITVDAVGCFESDQEEDEEDEEEEEIEAEEEFCKQVRSRDTSLEEWKGPETYSPNTAYGVDFLVPVMGYVCRVCHKFYDSNSGLRLSHCKSLAHFENLQKYKAAKNPSPATRPMSRRCAINARNALTALFTSSSGSGRPLSQPSTQDTAKIPSKVKPGFPSPPLPLRRSTRLKT", "length": 824, "header": "tr|A0A9J7JWR7-1|A0A9J7JWR7_CRIGR Isoform 1 of Cip1-interacting zinc finger protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Ciz1 PE=4 SV=1 CANONICAL=A0A9J7JWR7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KAH7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAH7/entry", "sequence": { "sequence": "MFNQQLQQQQLQQLQQQQLQQQQLQQQQQLLQLQQLLQQSPPQAPLPMPVSRGLPQQSSPQPLLNLQAAHTASLLNGSMLQRALLLQQLQGLDQFAVPPATYDSAGLTMPTAALGNLRAYNMAAPSLAAPSLTPTQMVTPNLQQFFPQATRQSLLGPPPVGVPMNPSQLSHSGRNSQKQARTPTSTTPNLKDSSSQTVPLGDREDPTEGSEEAQELQMDTPEDQDLLVCPNGMANETPVPEPETFEASEPPAKRSKSSEESTEKGPTGQPQAKVQPQIQMTAPKQTQTPDQLPEPPEAQVLPHFQPQVLQIQAQVQPRLQKQAQTQTSPEHLASQQSQVQPQVHPQPQKQAQPQTQPQVPAQAQPQEQPSGQMQEQTSEKTQDQPQTWPQGSAPPPEQASVLACATEPQPSPGAAEAGGEPEEVLPEPAGAQSNEDKSQEASTDGLDVGECEKRAREMLGTWGAGGSLKVTILQSSDSRAFNTTPLTSGPRPGDSTSAAAALASTHSKQTLQFFCYICKAGCSSQQEFQDHMSDAQHQQRLGEMQHSSQTCLLSLLPMPRDILERETEEPPPKRWCNTCQVYYMGDLIQHRRTQEHKIAKQSLRPFCTICNRYFKTPRKFVEHVKSQGHKDKAKELKTLEKETTSPEEDHFITVDAVGCFESDQEEDEEDEEEEEIEAEEEFCKQVRSRDTSLEEWKGPETYSPNTAYGVDFLVPVMGYVCRVCHKFYDSNSGLRLSHCKSLAHFENLQKYKAAKNPSPATRPMSRRCAINARNALTALFTSSSGSGRPLSQPSTQDTAKIPSKASRAVR", "length": 810, "header": "tr|A0A9J7KAH7-1|A0A9J7KAH7_CRIGR Computationally mapped isoform of Cip1-interacting zinc finger protein isoform X5 OS=Cricetulus griseus OX=10029 GN=Ciz1 PE=4 SV=1 CANONICAL=A0A9J7JWR7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GB74", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB74" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GB74", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB74" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100753565", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753565", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JWR7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWR7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JWR7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWR7" } ], "pmid": "" }, { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JWR7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWR7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 235, "end_pos": 237, "annotation": "n_glycosylation_sequon" }, { "start_pos": 482, "end_pos": 484, "annotation": "n_glycosylation_sequon" }, { "start_pos": 76, "end_pos": 78, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JWR7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWR7" }, { "id": "PS50171", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50171" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Matrin-type", "eco_id": "ECO_0000259", "start_pos": 719, "end_pos": 750, "start_aa": "Tyr", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 235, "end_pos": 237 }, { "start_pos": 482, "end_pos": 484 }, { "start_pos": 76, "end_pos": 78 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JW37-1", "uniprot_ac": "A0A9J7JW37", "uniprot_id": "A0A9J7JW37_CRIGR", "mass": { "chemical_mass": 22201.0, "monoisotopic_mass": 22201.0 }, "refseq": { "ac": "XP_027283531", "name": "keratin-associated protein 4-2-like isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283531" }, "gene_names": [ { "name": "LOC113836890", "type": "recommended", "evidence": [ { "id": "A0A9J7JW37", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JW37" } ] }, { "name": "LOC113836890", "type": "synonym", "evidence": [ { "id": "XP_027283531", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283531" } ] } ], "protein_names": [ { "name": "Keratin-associated protein 4-2-like isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7JW37", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JW37/entry#names_and_taxonomy" } ] }, { "name": "keratin-associated protein 4-2-like isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027283531", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283531" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027283531", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283531" } ] }, { "annotation": "In the hair cortex, hair keratin intermediate filaments are embedded in an interfilamentous matrix, consisting of hair keratin-associated proteins (KRTAP), which are essential for the formation of a rigid and resistant hair shaft through their extensive disulfide bond cross-linking with abundant cysteine residues of hair keratins. 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"PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23262:SF183", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23262:SF183", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23262:SF248", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23262:SF248", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13885", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13885", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027283531", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283531", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GEL9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEL9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GEL9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEL9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JQ44", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQ44", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JQ44-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQ44-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JW37", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JW37", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JW37-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JW37-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVNSCCGSVCSEEGCGQGCCQPSCCQPTCCRTTCCRPSCCVSSCCRPSCCQSVCCQPTCCHPSCCRPSCCRPSCCVSSCCRPSCCISSCCRPCCSSSSCCGSSCCRPSCCVSSCCRPSCCRPSCCVSSCCRPSCCRPSCCRPCCSSSSCCGSSCCRPSCCVSSCCRPSCCQTTCCRPSCCVSSCCRPQCCISSCCRPTCCQTTCCRPACSSGSCC", "length": 215, "header": "tr|A0A9J7JW37-1|A0A9J7JW37_CRIGR Isoform 1 of Keratin-associated protein 4-2-like isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC113836890 PE=4 SV=1 CANONICAL=A0A9J7JW37-1" }, "isoforms": [ { "isoform_ac": 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CANONICAL=A0A9J7JW37-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JW37-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JW37/entry", "sequence": { "sequence": "MVNSCCGSVCSEEGCGQGCCQPSCCQPTCCRTTCCRPSCCVSSCCRPSCCQSVCCQPTCCHPSCCRPSCCRPSCCVSSCCRPSCCISSCCRPCCSSSSCCGSSCCRPSCCVSSCCRPSCCRPSCCVSSCCRPSCCRPSCCRPCCSSSSCCGSSCCRPSCCVSSCCRPSCCQTTCCRPSCCVSSCCRPQCCISSCCRPTCCQTTCCRPACSSGSCC", "length": 215, "header": "tr|A0A9J7JW37-1|A0A9J7JW37_CRIGR Isoform 1 of Keratin-associated protein 4-2-like isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC113836890 PE=4 SV=1 CANONICAL=A0A9J7JW37-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048601.1) annotated using gene prediction method: Gnomon. 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"MSACVPTVSSPLPLQDPMSKLWRRGSTSGAMEAPEPGSPSSGEALELSLTGAHSHGVHKKKHKKHKKKHKKKHHQEEEAGQTQAPAKPQLKLKIKLGGQVLGTKSVPTFTVIPEGPRSPSPLMVVDNEEEPMEGVPLEQYRAWLDEDSNLSPSPLRDLPGDLEGQEEEEEQRWLDALEKGELDDNGDLKKEIDERLLTARQRALLQKARSQPSPILPLPVAGGCPAPALTEEMLLKREERARKRRLQAARRAEEHKNQTIERLTKTAAPSGRGGRGAARGERRGGRTAAPAPTPMVRYSSGAQGSTLSFPPGVPAPAAVAQRPAPSNPAPRCSVPGCPHPRRYACSRTGQALCSLQCYRINLQLRLGGPEGPGSPLLAT", "length": 379, "header": "tr|A0A9J7JX47-1|A0A9J7JX47_CRIGR Isoform 1 of INO80 complex subunit B isoform X3 OS=Cricetulus griseus OX=10029 GN=Ino80b PE=4 SV=1 CANONICAL=A0A9J7JX47-1" }, "isoforms": [ { "isoform_ac": "A0A8C2L764-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2L764/entry", "sequence": { "sequence": "MSKLWRRGSTSGAMEAPEPGEALELSLTGAHSHGVHKKKHKKHKKKHKKKHHQEEEAGQTQAPAKPQLKLKIKLGGQVLGTKSVPTFTVIPEGPRSPSPLMVVDNEEEPMEGVPLEQYRAWLDEDSNLSPSPLRDLPGDLEGQEEEEEQRWLDALEKGELDDNGDLKKEIDERLLTARQRALLQKARSQPSPILPLPVAGGCPAPALTEEMLLKREERARKRRLQAARRAEEHKNQTIERLTKTAAPSGRGGRGAARGERRGGRTAAPAPTPMVRYSSGAQGSTLSFPPGVPAPAAVAQRPAPSNPAPRCSVPGCPHPRRYACSRTGQALCSLQCYRINLQLRLGGPEGPGSPLLAT", "length": 357, "header": "tr|A0A8C2L764-1|A0A8C2L764_CRIGR Computationally mapped isoform of INO80 complex subunit B isoform X6 OS=Cricetulus griseus OX=10029 GN=Ino80b PE=4 SV=1 CANONICAL=A0A9J7JX47-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GGR2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGR2/entry", "sequence": { "sequence": "MSACVPTVSSPLPLQDPMSKLWRRGSTSGAMEAPEPGEALELSLTGAHSHGVHKKKHKKHKKKHKKKHHQEEEAGQTQAPAKPQLKLKIKLGGQVLGTKSVPTFTVIPEGPRSPSPLMVVDNEEEPMEGVPLEQYRAWLDEDSNLSPSPLRDLPGDLEGQEEEEEQRWLDALEKGELDDNGDLKKEIDERLLTARQRALLQKARSQPSPILPLPVAGGCPAPALTEEMLLKREERARKRRLQAARRAEEHKNQTIERLTKTAAPSGRGGRGAARGERRGGRTAAPAPTPMVRYSSGAQGSTLSFPPGVPAPAAVAQRPAPSNPAPRCSVPGCPHPRRYACSRTGQALCSLQCYRINLQLRLGGPEGPGSPLLAT", "length": 374, "header": "tr|A0A9J7GGR2-1|A0A9J7JX47_CRIGR Computationally mapped isoform of INO80 complex subunit B isoform X3 OS=Cricetulus griseus OX=10029 GN=Ino80b PE=4 SV=1 CANONICAL=A0A9J7JX47-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JR08-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JR08/entry", "sequence": { "sequence": "MSKLWRRGSTSGAMEAPEPGSPSSGEALELSLTGAHSHGVHKKKHKKHKKKHKKKHHQEEEAGQTQAPAKPQLKLKIKLGGQVLGTKSVPTFTVIPEGPRSPSPLMVVDNEEEPMEGVPLEQYRAWLDEDSNLSPSPLRDLPGDLEGQEEEEEQRWLDALEKGELDDNGDLKKEIDERLLTARQRALLQKARSQPSPILPLPVAGGCPAPALTEEMLLKREERARKRRLQAARRAEEHKNQTIERLTKTAAPSGRGGRGAARGERRGGRTAAPAPTPMVRYSSGAQGSTLSFPPGVPAPAAVAQRPAPSNPAPRCSVPGCPHPRRYACSRTGQALCSLQCYRINLQLRLGGPEGPGSPLLAT", "length": 362, "header": "tr|A0A9J7JR08-1|A0A9J7JR08_CRIGR Computationally mapped isoform of INO80 complex subunit B isoform X5 OS=Cricetulus griseus OX=10029 GN=Ino80b PE=4 SV=1 CANONICAL=A0A9J7JX47-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JX47-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JX47/entry", "sequence": { "sequence": "MSACVPTVSSPLPLQDPMSKLWRRGSTSGAMEAPEPGSPSSGEALELSLTGAHSHGVHKKKHKKHKKKHKKKHHQEEEAGQTQAPAKPQLKLKIKLGGQVLGTKSVPTFTVIPEGPRSPSPLMVVDNEEEPMEGVPLEQYRAWLDEDSNLSPSPLRDLPGDLEGQEEEEEQRWLDALEKGELDDNGDLKKEIDERLLTARQRALLQKARSQPSPILPLPVAGGCPAPALTEEMLLKREERARKRRLQAARRAEEHKNQTIERLTKTAAPSGRGGRGAARGERRGGRTAAPAPTPMVRYSSGAQGSTLSFPPGVPAPAAVAQRPAPSNPAPRCSVPGCPHPRRYACSRTGQALCSLQCYRINLQLRLGGPEGPGSPLLAT", "length": 379, "header": "tr|A0A9J7JX47-1|A0A9J7JX47_CRIGR Isoform 1 of INO80 complex subunit B isoform X3 OS=Cricetulus griseus OX=10029 GN=Ino80b PE=4 SV=1 CANONICAL=A0A9J7JX47-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 293, "start_aa": "Thr", "end_pos": 293, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr293", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGR2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGR2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGR2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGR2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100764793", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764793", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "chromatin remodeling", "id": "GO:0006338", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006338", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JX47", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JX47" } ], "pmid": "" }, { "name": "regulation of DNA strand elongation", "id": "GO:0060382", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060382", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JX47", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JX47" } ], "pmid": "" }, { "name": "regulation of chromosome organization", "id": "GO:0033044", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033044", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JX47", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JX47" } ], "pmid": "" }, { "name": "positive regulation of DNA-templated transcription", "id": "GO:0045893", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045893", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JX47", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JX47" } ], "pmid": "" }, { "name": "regulation of DNA replication", "id": "GO:0006275", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006275", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JX47", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JX47" } ], "pmid": "" }, { "name": "regulation of cell cycle", "id": "GO:0051726", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051726", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JX47", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JX47" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "Ino80 complex", "id": "GO:0031011", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031011", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JX47", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JX47" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JX47", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JX47" } ], "pmid": "" }, { "name": "nuclear body", "id": "GO:0016604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016604", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JX47", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JX47" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 149, "end_pos": 151, "annotation": "n_glycosylation_sequon" }, { "start_pos": 257, "end_pos": 259, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JX47", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JX47" }, { "id": "SM01406", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01406" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "INO80 complex subunit B-like conserved region", "eco_id": "ECO_0000259", "start_pos": 232, "end_pos": 313, "start_aa": "Glu", "end_aa": "Val", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 293 ], 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}, "refseq": { "ac": "XP_027286267", "name": "zinc finger protein 60 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286267" }, "gene_names": [ { "name": "LOC100767190", "type": "recommended", "evidence": [ { "id": "A0A9J7JRL0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRL0" } ] }, { "name": "LOC100767190", "type": "synonym", "evidence": [ { "id": "XP_027286267", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286267" } ] } ], "protein_names": [ { "name": "Zinc finger protein 60 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7JRL0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRL0/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 60 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027286267", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286267" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027286267", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286267" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JRL0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRL0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100767190", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRL0", "locus": {} } ], "crossref": [ { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100767190", "url": "https://www.ncbi.nlm.nih.gov/gene/100767190", "database": "GeneID", "categories": [ 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Classification" ] }, { "id": "PTHR23234:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23234:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24377", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24377", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027286267", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286267", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GHX2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHX2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GHX2-1", "url": 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"MASSGSQDMACGAVTFGDVAVDFSEEEWACLDSAQRAFYRDLMLETYSNLVTVVGSSISKPDLITLLEEEREPWMVVKEETDRPSQVGSSISKPDLITSLEQEREPWMVVKEETDRPSPDLESCYEAENTSQENHIYNRNLFKQGIKKLSKTFGLKASSFNNGPNYTTSNELPSYQGDGYQKISNKEKLLPNTFQTLAHNIEKTYECKECGKYFSCSSNLIQHHSIHTGEKPYECKECGKAFRLPQHFARHQKSHSGKRPFECDECGKGFQLPSVLKYHKTIHTGIKPFECEECGKSFKRFSHLVEHRIIHADVKPFECNECGKAFNRRSNLMQHQKIHSGERPFQCKECGKAFTVLAHLTRHQNIHTGEKSFECEQCGKIFSCGSFLVQHQSIHTGEKPFECNVCGKAFRLQVYLSEHQKTHTDEKPFKCMLCGSAFRRKYQLNEHQKIHTDEKPYQCKECGKLFRHHSNLIDHESIHTGKKPFECKECGKVFRLNIHLIRHQRLHSGERPFECKECGRAFHLPSQLNYHKIVHTSIKPFECKVCGKSFKHVSTLVQHRIIHADVKPFECNECGKAFNRRSNLMQHQKIHSGERPFQCKECGKAFTVLALLTRHQNIHSGEKSFECKECGKIFSCGSFLVQHQSIHTGEKPFECNVCGKAFRLQVYLSEHQKTHTGEKPFKCMLCGSAFRRKYQLNEHQRIHTDEKPYQCNECGKYFRRRSNFTEHQSIHTGKKPFDCKECGKVFRLNIHLIRHQRCHSGERPFGCDECGRTFHLPSQLNYHKSILHTGQKIFECEECGKSFKRVSSLVEHRIIHAGVKPYECNECGKAFSRRSNLMQHQKIHSGERPFQCKECGKGFTLLAQLTRHQNIHTGEKSFECEQCGLAFRLKSQLSQHQRIHTDVKLFQCKECGKDFIHSTGLRIHQRIHTGEKPFQCKECGEAFQYHYQFLAHFRIHTGKNPYECTQCGKYFTCDRDLKLHQRIHTVEKLYQC", "length": 992, "header": "tr|A0A9J7JRL0-1|A0A9J7JRL0_CRIGR Isoform 1 of Zinc finger protein 60 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100767190 PE=3 SV=1 CANONICAL=A0A9J7JRL0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GHX2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHX2/entry", "sequence": { "sequence": "MVVKEETDRPSQVGSSISKPDLITSLEQEREPWMVVKEETDRPSPDLESCYEAENTSQENHIYNRNLFKQGIKKLSKTFGLKASSFNNGPNYTTSNELPSYQGDGYQKISNKEKLLPNTFQTLAHNIEKTYECKECGKYFSCSSNLIQHHSIHTGEKPYECKECGKAFRLPQHFARHQKSHSGKRPFECDECGKGFQLPSVLKYHKTIHTGIKPFECEECGKSFKRFSHLVEHRIIHADVKPFECNECGKAFNRRSNLMQHQKIHSGERPFQCKECGKAFTVLAHLTRHQNIHTGEKSFECEQCGKIFSCGSFLVQHQSIHTGEKPFECNVCGKAFRLQVYLSEHQKTHTDEKPFKCMLCGSAFRRKYQLNEHQKIHTDEKPYQCKECGKLFRHHSNLIDHESIHTGKKPFECKECGKVFRLNIHLIRHQRLHSGERPFECKECGRAFHLPSQLNYHKIVHTSIKPFECKVCGKSFKHVSTLVQHRIIHADVKPFECNECGKAFNRRSNLMQHQKIHSGERPFQCKECGKAFTVLALLTRHQNIHSGEKSFECKECGKIFSCGSFLVQHQSIHTGEKPFECNVCGKAFRLQVYLSEHQKTHTGEKPFKCMLCGSAFRRKYQLNEHQRIHTDEKPYQCNECGKYFRRRSNFTEHQSIHTGKKPFDCKECGKVFRLNIHLIRHQRCHSGERPFGCDECGRTFHLPSQLNYHKSILHTGQKIFECEECGKSFKRVSSLVEHRIIHAGVKPYECNECGKAFSRRSNLMQHQKIHSGERPFQCKECGKGFTLLAQLTRHQNIHTGEKSFECEQCGLAFRLKSQLSQHQRIHTDVKLFQCKECGKDFIHSTGLRIHQRIHTGEKPFQCKECGEAFQYHYQFLAHFRIHTGKNPYECTQCGKYFTCDRDLKLHQRIHTVEKLYQC", "length": 918, "header": "tr|A0A9J7GHX2-1|A0A9J7JRL0_CRIGR Computationally mapped isoform of Zinc finger protein 60 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100767190 PE=3 SV=1 CANONICAL=A0A9J7JRL0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H734-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H734/entry", "sequence": { "sequence": "MASSGSQDMACGAVTFGDVAVDFSEEEWACLDAAQRAFYRDLMLETYSNLVTVVGSSISKPHLITLLEQEREPWMVVKEETDRPSMDLESDYEAQKISPDNHIYNVNLHKQSIKHVSKACDLKSSSFSDGPNSRTFKRLQDYQDGDADQKINNKGKMPTYTSQSLTHNTEKAYECKECGKPFSCSSTLIQHQSVHTEERPNECQECGKTFRLHQQLTRHQKSHSGERPFECEECGKAFRLQQQLIRHQTSHSGERHFECEECGKTFHRPSLLKYHKTIHSGTKPFACEECGKSFRRVFQLVQHSSVHTGVKPHECQECGKAFRLHQQLTRHQKSHSGERPFECDECGKAFHHPNVLKYHKTIHSGTKPFACEECGKSFKRAYYLVLHRSIHASVRPYECKECGKAFKRRSYFRQHQKIHSGERPFQCKECGKAFTLLFQLTQHQNVHSGEKSLECEQCGKIFSHSSLLVRHQSIHTGEKPFECNVCGKAFRLQSYLSLHQKTHSEEKPFKCKLCGSAFRQMYLLNQHQKIHTNGKPFQCNVCGKGFLRSTFLKIHQRIHTGEKPFQCKECGEAFQYRYQFLRHFSIHTGKHPYECEDCRKCFTCDRDLTVHQRIHIGEKLCQR", "length": 623, "header": "tr|A0A9J7H734-1|A0A9J7H734_CRIGR Computationally mapped isoform of Zinc finger protein 780A isoform X10 OS=Cricetulus griseus OX=10029 GN=LOC100767190 PE=3 SV=1 CANONICAL=A0A9J7JRL0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JRL0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRL0/entry", "sequence": { "sequence": "MASSGSQDMACGAVTFGDVAVDFSEEEWACLDSAQRAFYRDLMLETYSNLVTVVGSSISKPDLITLLEEEREPWMVVKEETDRPSQVGSSISKPDLITSLEQEREPWMVVKEETDRPSPDLESCYEAENTSQENHIYNRNLFKQGIKKLSKTFGLKASSFNNGPNYTTSNELPSYQGDGYQKISNKEKLLPNTFQTLAHNIEKTYECKECGKYFSCSSNLIQHHSIHTGEKPYECKECGKAFRLPQHFARHQKSHSGKRPFECDECGKGFQLPSVLKYHKTIHTGIKPFECEECGKSFKRFSHLVEHRIIHADVKPFECNECGKAFNRRSNLMQHQKIHSGERPFQCKECGKAFTVLAHLTRHQNIHTGEKSFECEQCGKIFSCGSFLVQHQSIHTGEKPFECNVCGKAFRLQVYLSEHQKTHTDEKPFKCMLCGSAFRRKYQLNEHQKIHTDEKPYQCKECGKLFRHHSNLIDHESIHTGKKPFECKECGKVFRLNIHLIRHQRLHSGERPFECKECGRAFHLPSQLNYHKIVHTSIKPFECKVCGKSFKHVSTLVQHRIIHADVKPFECNECGKAFNRRSNLMQHQKIHSGERPFQCKECGKAFTVLALLTRHQNIHSGEKSFECKECGKIFSCGSFLVQHQSIHTGEKPFECNVCGKAFRLQVYLSEHQKTHTGEKPFKCMLCGSAFRRKYQLNEHQRIHTDEKPYQCNECGKYFRRRSNFTEHQSIHTGKKPFDCKECGKVFRLNIHLIRHQRCHSGERPFGCDECGRTFHLPSQLNYHKSILHTGQKIFECEECGKSFKRVSSLVEHRIIHAGVKPYECNECGKAFSRRSNLMQHQKIHSGERPFQCKECGKGFTLLAQLTRHQNIHTGEKSFECEQCGLAFRLKSQLSQHQRIHTDVKLFQCKECGKDFIHSTGLRIHQRIHTGEKPFQCKECGEAFQYHYQFLAHFRIHTGKNPYECTQCGKYFTCDRDLKLHQRIHTVEKLYQC", "length": 992, "header": "tr|A0A9J7JRL0-1|A0A9J7JRL0_CRIGR Isoform 1 of Zinc finger protein 60 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100767190 PE=3 SV=1 CANONICAL=A0A9J7JRL0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GHX2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHX2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GHX2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHX2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100767190", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767190", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JRL0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRL0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JRL0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRL0" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JRL0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRL0" } ], "pmid": "" }, { "name": "regulation of anatomical structure morphogenesis", "id": "GO:0022603", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022603", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JRL0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRL0" } ], "pmid": "" }, { "name": "negative regulation of gene expression", "id": "GO:0010629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010629", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JRL0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRL0" } ], "pmid": "" }, { "name": "negative regulation of DNA-templated transcription", "id": "GO:0045892", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045892", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JRL0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRL0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JRL0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRL0" } ], "pmid": "" }, { "name": "sequence-specific DNA binding", "id": "GO:0043565", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043565", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JRL0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRL0" } ], "pmid": "" }, { "name": "double-stranded DNA binding", "id": "GO:0003690", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003690", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JRL0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRL0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 129, "end_pos": 131, "annotation": "n_glycosylation_sequon" }, { "start_pos": 165, "end_pos": 167, "annotation": "n_glycosylation_sequon" }, { "start_pos": 723, "end_pos": 725, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JRL0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRL0" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 205, "end_pos": 232, "start_aa": "Tyr", "end_aa": "Pro", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7JRL0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRL0" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 14, "end_pos": 86, "start_aa": "Val", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 129, "end_pos": 131 }, { "start_pos": 165, "end_pos": 167 }, { "start_pos": 723, "end_pos": 725 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JSD9-1", "uniprot_ac": "A0A9J7JSD9", "uniprot_id": "A0A9J7JSD9_CRIGR", "mass": { "chemical_mass": 27627.0, "monoisotopic_mass": 27627.0 }, "refseq": { "ac": "XP_003503062", "name": "protein FAM122B isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503062" }, "gene_names": [ { "name": "Fam122b", "type": "recommended", "evidence": [ { "id": "A0A9J7JSD9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSD9" } ] }, { "name": "Fam122b", "type": "synonym", "evidence": [ { "id": "XP_003503062", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503062" } ] } ], "protein_names": [ { "name": "Protein FAM122B isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7JSD9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSD9/entry#names_and_taxonomy" } ] }, { "name": "protein FAM122B isoform X2", "type": "synonym", "evidence": [ { "id": "XP_003503062", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503062" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 263 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613932.1) and transcript sequence (IACG01048207.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003503062", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503062" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JSD9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSD9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fam122b", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSD9", "locus": {} } ], "crossref": [ { "id": "A0A9J7JSD9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JSD9", "database": "AlphaFoldDB", "categories": [] }, { "id": "100767852", "url": "https://www.ncbi.nlm.nih.gov/gene/100767852", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026716", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026716", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GID5", "url": "https://www.orthodb.org/?gene=A0A9J7GID5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GJS9", "url": "https://www.orthodb.org/?gene=A0A9J7GJS9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GN95", "url": "https://www.orthodb.org/?gene=A0A9J7GN95", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JSD9", "url": "https://www.orthodb.org/?gene=A0A9J7JSD9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7K0I7", "url": "https://www.orthodb.org/?gene=A0A9J7K0I7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7K208", "url": "https://www.orthodb.org/?gene=A0A9J7K208", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22227", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22227", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22227:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22227:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27638", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27638", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003503062", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503062", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GID5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GID5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GID5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GID5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GIM5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIM5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GIM5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIM5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GJS9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJS9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GJS9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJS9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GN95", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GN95", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GN95-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GN95-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JSD9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSD9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JSD9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSD9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K0I7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0I7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K0I7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0I7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K208", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K208", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K208-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K208-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAQEKMELDFEADTSDGGTLRRSNSAPLIHVLSDLSQVFEPYPLRTRRNSATIMSHHSLEEGLDMMNRETSLGREAQAGMQISQSWDESLSLSDSDFDKPEKLYSPKRIDFTPVSPAPSPTRGFGKQCYSPSLQMFVSSSGMPSSPVSNPRHFSRRSQSPVKCIRPNALGPLKRKGEMETESQPKRLFQGTTTMLSTDAGQLSDLSSCSDILDGSSISSGLSSDSLATGSAPAESPVACSNSCSSFILMDDLSPK", "length": 255, "header": "tr|A0A9J7JSD9-1|A0A9J7JSD9_CRIGR Isoform 1 of Protein FAM122B isoform X2 OS=Cricetulus griseus OX=10029 GN=Fam122b PE=3 SV=1 CANONICAL=A0A9J7JSD9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GID5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GID5/entry", "sequence": { "sequence": "MAQEKMELDFEADTSDGGTLRRSNSAPLIHVLSDLSQVFEPYPLRTRRNSATIMSHHSLEEGLDMMNRETSLGREAQAGMQISQSWDESLSLSDSDFDKPEKLYSPKRIDFTPVSPAPSPTRGFGKCYSPSLQMFVSSSGMPSSPVSNPRHFSSRRSQSPVKCIRPNALGPLKRKGEMETESQPKRLFQGTTTMLSTDAGQLSDLSSWWCYQGEEIPALTRCVEHLQMNE", "length": 230, "header": "tr|A0A9J7GID5-1|A0A9J7JSD9_CRIGR Computationally mapped isoform of Protein FAM122B isoform X2 OS=Cricetulus griseus OX=10029 GN=Fam122b PE=3 SV=1 CANONICAL=A0A9J7JSD9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GIM5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIM5/entry", "sequence": { "sequence": "MAQEKMELDFEADTSDGGTLRRSNSAPLIHVLSDLSQVFEPYPLRTRRNSATIMSHHSLEEGLDMMNRETSLGREAQAGMQISQSWDESLSLSDSDFDKPEKLYSPKRIDFTPVSPAPSPTRGFGKQCYSPSLQMFVSSSGMPSSPVSNPRHFSRRSQSPVKCIRPNALGPLKRKGEMETESQPKRLFQGTTTMLSTDAGQLSDLSSWWCYQGEEIPALTRCVEHLQMNE", "length": 230, "header": "tr|A0A9J7GIM5-1|A0A9J7JSD9_CRIGR Computationally mapped isoform of Protein FAM122B isoform X2 OS=Cricetulus griseus OX=10029 GN=Fam122b PE=3 SV=1 CANONICAL=A0A9J7JSD9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GJS9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJS9/entry", "sequence": { "sequence": "MAQEKMELDFEADTSDGGTLRRSNSAPLIHVLSDLSQVFEPYPLRTRRNSATIMSHHSLEEGLDMMNRETSLGREAQAGMQISQSWDESLSLSDSDFDKPEKLYSPKRIDFTPVSPAPSPTRGFGKQCYSPSLQMFVSSSGMPSSPVSNPRHFSSRRSQSPVKCIRPNALGPLKRKGEMETESQPKRLFQGTTTMLSTDAGQLSDLSSWWCYQGEEIPALTRCVEHLQMNE", "length": 231, "header": "tr|A0A9J7GJS9-1|A0A9J7JSD9_CRIGR Computationally mapped isoform of Protein FAM122B isoform X2 OS=Cricetulus griseus OX=10029 GN=Fam122b PE=3 SV=1 CANONICAL=A0A9J7JSD9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GN95-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GN95/entry", "sequence": { "sequence": "MAQEKMELDFEADTSDGGTLRRSNSAPLIHVLSDLSQVFEPYPLRTRRNSATIMSHHSLEEGLDMMNRETSLGREAQAGMQISQSWDESLSLSDSDFDKPEKLYSPKRIDFTPVSPAPSPTRGFGKCYSPSLQMFVSSSGMPSSPVSNPRHFSRRSQSPVKCIRPNALGPLKRKGEMETESQPKRLFQGTTTMLSTDAGQLSDLSSWWCYQGEEIPALTRCVEHLQMNE", "length": 229, "header": "tr|A0A9J7GN95-1|A0A9J7GN95_CRIGR Computationally mapped isoform of Protein FAM122B isoform X7 OS=Cricetulus griseus OX=10029 GN=Fam122b PE=3 SV=1 CANONICAL=A0A9J7JSD9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JSD9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSD9/entry", "sequence": { "sequence": "MAQEKMELDFEADTSDGGTLRRSNSAPLIHVLSDLSQVFEPYPLRTRRNSATIMSHHSLEEGLDMMNRETSLGREAQAGMQISQSWDESLSLSDSDFDKPEKLYSPKRIDFTPVSPAPSPTRGFGKQCYSPSLQMFVSSSGMPSSPVSNPRHFSRRSQSPVKCIRPNALGPLKRKGEMETESQPKRLFQGTTTMLSTDAGQLSDLSSCSDILDGSSISSGLSSDSLATGSAPAESPVACSNSCSSFILMDDLSPK", "length": 255, "header": "tr|A0A9J7JSD9-1|A0A9J7JSD9_CRIGR Isoform 1 of Protein FAM122B isoform X2 OS=Cricetulus griseus OX=10029 GN=Fam122b PE=3 SV=1 CANONICAL=A0A9J7JSD9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K0I7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0I7/entry", "sequence": { "sequence": "MAQEKMELDFEADTSDGGTLRRSNSAPLIHVLSDLSQVFEPYPLRTRRNSATIMSHHSLEEGLDMMNRETSLGREAQAGMQISQSWDESLSLSDSDFDKPEKLYSPKRIDFTPVSPAPSPTRGFGKCYSPSLQMFVSSSGMPSSPVSNPRHFSRRSQSPVKCIRPNALGPLKRKGEMETESQPKRLFQGTTTMLSTDAGQLSDLSSCSDILDGSSISSGLSSDSLATGSAPAESPVACSNSCSSFILMDDLSPK", "length": 254, "header": "tr|A0A9J7K0I7-1|A0A9J7K0I7_CRIGR Computationally mapped isoform of Protein FAM122B isoform X4 OS=Cricetulus griseus OX=10029 GN=Fam122b PE=3 SV=1 CANONICAL=A0A9J7JSD9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K208-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K208/entry", "sequence": { "sequence": "MAQEKMELDFEADTSDGGTLRRSNSAPLIHVLSDLSQVFEPYPLRTRRNSATIMSHHSLEEGLDMMNRETSLGREAQAGMQISQSWDESLSLSDSDFDKPEKLYSPKRIDFTPVSPAPSPTRGFGKCYSPSLQMFVSSSGMPSSPVSNPRHFSSRRSQSPVKCIRPNALGPLKRKGEMETESQPKRLFQGTTTMLSTDAGQLSDLSSCSDILDGSSISSGLSSDSLATGSAPAESPVACSNSCSSFILMDDLSPK", "length": 255, "header": "tr|A0A9J7K208-1|A0A9J7K208_CRIGR Computationally mapped isoform of Protein FAM122B isoform X3 OS=Cricetulus griseus OX=10029 GN=Fam122b PE=3 SV=1 CANONICAL=A0A9J7JSD9-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 121, "start_aa": "Thr", "end_pos": 121, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr121", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GID5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GID5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GID5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GID5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein serine/threonine phosphatase inhibitor activity", "id": "GO:0004865", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004865", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JSD9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSD9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 121 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JJT8-1", "uniprot_ac": "A0A9J7JJT8", "uniprot_id": "A0A9J7JJT8_CRIGR", "mass": { "chemical_mass": 79715.0, "monoisotopic_mass": 79715.0 }, "refseq": { "ac": "XP_027274457", "name": "coiled-coil domain-containing protein 177", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274457" }, "gene_names": [ { "name": "LOC113836016", "type": "recommended", "evidence": [ { "id": "A0A9J7JJT8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJT8" } ] }, { "name": "LOC113836016", "type": "synonym", "evidence": [ { "id": "XP_027274457", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274457" } ] } ], "protein_names": [ { "name": "Coiled-coil domain-containing protein 177", "type": "synonym", "evidence": [ { "id": "A0A9J7JJT8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJT8/entry#names_and_taxonomy" } ] }, { "name": "coiled-coil domain-containing protein 177", "type": "synonym", "evidence": [ { "id": "XP_027274457", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027274457" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. 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"MDITSLSCGSLLLGDQVCSQEETEGESTLVGFLKNCNKDEAVDFTQEEWATKDPPQNDIPSDVTAENCKNPASVGCQTLTKPNALTCLKEELVTTQRGGVQEVEKQLHTKDLALEQDILTRHNFMETQQVDAVTFEDVTVDFTQEEWTSLDPIQRSLYRDVMLENYQNLATVEWEMHLKTKGTALQRDIVWSDMSNGTQLGREHNGGVLGDSIQVGTVTSEDSCPQIHISTPNTENTLECNLYGKDFLPLKETSTEDNTFQLNQCVKPFTLTSDVSQKMSTLEESFECSDCGKTFLNQLVLQAHSASHGEKDLHKSEQCAQAFTHPTSHDEHVVIPTEKKYYECKKCEKIFTHPIYLNIHMQSHTVEKPYDCKECGKAFTERSSLIVHLRQHTREKSYECKECGKTFIQPSRLTEHMRSHTGEKPYQCDQCGNAFASSSYLTTHLRTHTGEKPFECNICGKAFTRSSYLLGHIRTHTGEKPYECKVCGKAFSGRSWLTIHLRKHTGERPYPCTECEKAFTSFAQLTEHIKTHTGEKPFRCKVCARTFRNSSCLKTHFRIHTGIKPYKCNFCGKDFTARSGLTKHVLIHNGEKPYECKECGKAFSTSSGLVEHIRIHTGEKPFECYQCGKALAHSSSLVGHLRTHTGEKPFECNQCDKTFTRSSYLRIHMRTHTGEKPYECKECGKTFPERSCLTKHIRTHTGERPYECKECGKGFISFAQLTVHIKTHSSERPFQCKVCTKSFRNSSSLETHFRIHTGVKPYKCTYCGKDFTARSGLTIHLRNHTGEKSYACQECGKAFSTSSGLIAHIRSHKGEKPFECDHCGKAFASSSYLNVHLKIHTGEKPFQCTVCGKTFTCSSYLPVHMRTHTGEKPFQCIICGKSFLWSSYLRVHMRIHTGEKPYVCQYCGKAFTEHSGLNKHLRKHTGEKPYEYKECASADAKEHENPHWGENL", "length": 952, "header": "tr|A0A9J7GWN7-1|A0A9J7GWN7_CRIGR Computationally mapped isoform of Zinc finger protein 26 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100766207 PE=3 SV=1 CANONICAL=A0A9J7JK10-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JK10-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK10/entry", "sequence": { "sequence": "MDITSLSCGSLLLGDQVCSQEETEGESTLVGFLKNCNKDEAVDFTQEEWATKDPPQNDIPSDVTAENCKNPASVGCQTLTKPNALTCLKEELVTTQRGGVQEVEKQLHTKDLALEQDILTRHNFMETQQVDAVTFEDVTVDFTQEEWTSLDPIQRSLYRDVMLENYQNLATVGGQLFKPSLISWLEQKVELTVTEQEILQEWEMHLKTKGTALQRDIVWSDMSNGTQLGREHNGGVLGDSIQVGTVTSEDSCPQIHISTPNTENTLECNLYGKDFLPLKETSTEDNTFQLNQCVKPFTLTSDVSQKMSTLEESFECSDCGKTFLNQLVLQAHSASHGEKDLHKSEQCAQAFTHPTSHDEHVVIPTEKKYYECKKCEKIFTHPIYLNIHMQSHTVEKPYDCKECGKAFTERSSLIVHLRQHTREKSYECKECGKTFIQPSRLTEHMRSHTGEKPYQCDQCGNAFASSSYLTTHLRTHTGEKPFECNICGKAFTRSSYLLGHIRTHTGEKPYECKVCGKAFSGRSWLTIHLRKHTGERPYPCTECEKAFTSFAQLTEHIKTHTGEKPFRCKVCARTFRNSSCLKTHFRIHTGIKPYKCNFCGKDFTARSGLTKHVLIHNGEKPYECKECGKAFSTSSGLVEHIRIHTGEKPFECYQCGKALAHSSSLVGHLRTHTGEKPFECNQCDKTFTRSSYLRIHMRTHTGEKPYECKECGKTFPERSCLTKHIRTHTGERPYECKECGKGFISFAQLTVHIKTHSSERPFQCKVCTKSFRNSSSLETHFRIHTGVKPYKCTYCGKDFTARSGLTIHLRNHTGEKSYACQECGKAFSTSSGLIAHIRSHKGEKPFECDHCGKAFASSSYLNVHLKIHTGEKPFQCTVCGKTFTCSSYLPVHMRTHTGEKPFQCIICGKSFLWSSYLRVHMRIHTGEKPYVCQYCGKAFTEHSGLNKHLRKHTGEKPYEYKECASADAKEHENPHWGENL", "length": 980, "header": "tr|A0A9J7JK10-1|A0A9J7JK10_CRIGR Isoform 1 of Zinc finger protein 26 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100766207 PE=3 SV=1 CANONICAL=A0A9J7JK10-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JK10", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK10" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JK10", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK10" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100766207", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766207", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JK10", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK10" } ], "pmid": "" }, { "name": "transcription regulator complex", "id": "GO:0005667", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005667", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JK10", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK10" } ], "pmid": "" }, { "name": "chromatin", "id": "GO:0000785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000785", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JK10", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK10" } ], "pmid": "" }, { "name": "PcG protein complex", "id": "GO:0031519", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031519", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JK10", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK10" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JK10", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK10" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": 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Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. 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[ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003499798", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003499798" } ] }, { "annotation": "Ubiquitin-like protein that plays a role in cell proliferation and sister chromatid cohesion by associating with spliceosomal proteins. Participates thereby in pre-mRNA splicing by maintaining spliceosome integrity. Promotes the functional integrity of the Fanconi anemia DNA repair pathway by interacting with FANCI component and subsequently mediating the formation of FANCI homodimers. Also plays a protective role against ER stress-induced apoptosis.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JK20", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK20#function" }, { "database": "UniProtKB", "id": "ARBA00059610", "url": "https://www.uniprot.org/uniprotkb/ARBA00059610#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JK20", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK20" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ubl5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK20", "locus": {} } ], "crossref": [ { "id": "A0A9J7JK20", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JK20", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd01791", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01791", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100764154", "url": "https://www.ncbi.nlm.nih.gov/gene/100764154", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000626", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000626", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039732", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039732", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100764154", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764154", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GMSLEMQ", "url": "https://omabrowser.org/oma/group/GMSLEMQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JK20", "url": "https://www.orthodb.org/?gene=A0A9J7JK20", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13042", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13042", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00240", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00240", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003499798", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003499798", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JK20", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK20", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JK20-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK20-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYYQ", "length": 73, "header": "tr|A0A9J7JK20-1|A0A9J7JK20_CRIGR Isoform 1 of Ubiquitin-like protein 5 OS=Cricetulus griseus OX=10029 GN=Ubl5 PE=4 SV=1 CANONICAL=A0A9J7JK20-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JK20-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK20/entry", "sequence": { "sequence": "MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYYQ", "length": 73, "header": "tr|A0A9J7JK20-1|A0A9J7JK20_CRIGR Isoform 1 of Ubiquitin-like protein 5 OS=Cricetulus griseus OX=10029 GN=Ubl5 PE=4 SV=1 CANONICAL=A0A9J7JK20-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK28/entry#names_and_taxonomy" } ] }, { "name": "centrosomal protein of 78 kDa-like", "type": "synonym", "evidence": [ { "id": "XP_027262088", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262088" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023277303.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027262088.1. COMPLETENESS: incomplete on the amino end.", "evidence": [ { "database": "RefSeq", "id": "XP_027262088", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262088" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JK28", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK28" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113834726", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK28", "locus": {} } ], "crossref": [ { "id": "A0A9J7JK28", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JK28", "database": "AlphaFoldDB", "categories": [] }, { "id": "113834726", "url": "https://www.ncbi.nlm.nih.gov/gene/113834726", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026212", "url": 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annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027267423", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267423" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JK65", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK65" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100763896", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK65", "locus": {} } ], "crossref": [ { "id": "A0A9J7JK65", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JK65", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd06365", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06365", "database": "CDD", "categories": [ "Protein 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"InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017978", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017978", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028082", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028082", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038550", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038550", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763896", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763896", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JK65", "url": "https://www.orthodb.org/?gene=A0A9J7JK65", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24061", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24061", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24061:SF567", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24061:SF567", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00003", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00003", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01094", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01094", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07562", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07562", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027267423", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267423", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JK65", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK65", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JK65-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK65-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFSWSFIPWILQIPNLVCAFGNSECYFRIKDFSHDGNVMIGAFFPLYYYYTNKKIPHKNLPNHYEDLYLQYKFKNYQFVLALVFAIEEINRNPHLLPNTSLGFDLHNIPFSEKNTLMNAFIWLTGVNGDIVNYNCKLEQKSAAALTGTSFAISAHMGTLLQLYKIPQLTFGPFDSILGDRAQFTSLYQMAPKDTYLPRGIVSLMLHFKWSWVGLLLTDDHRGMQILSDLKEEMKKNRVCVAFVELISGTWNSFSHKFWKSLGKIEDSSANVIIIFGDTDSLQGLMKNIGQKLTTWKVWIMNSQWDVTNHNDYFMLDSFHGSLTFSHHYEEMVDFSNFIQTVHPSKYPEDTYLPKLWHLFFKCPFSKINCKLLDNCQPNASLDLLPKQNFDTAMSEESYYIYNAVYSVAHSLHKLILKHIQLQQSENGEENIFLPWQLHPFLQNNYMNNHVGSHMVMDMNSKLDSKYDIINFWNFPKGMGLKVKVGSFSPYAPHGQELSLSNHLIQWPARFTEIPKSVCYKLCEPGFRRTVIQGKAACCFDCISCPDNEISNDTADMDHCVKCPESHYANTERNHCLQKTVTFLHFEDPLGMALSSTALCFSAITATVLGIFVKHRDTPIVKANNRALSYILLITLIICFLSSLLFIGQPNTATCILQQTTFGIVFTVALSTVLAKALTVVIAFKVTFPGKWMRWLMISRATNYIIPIFTLLQIILCGIWLGTSPPFVDQDSHAQHGHIIILCNKGSAIAFHCVLGYLCSLAIGSYIMAFLSRNLPDKFNEAKFLTFSMLVFFSVWVTFLPVYHSTKGTIMVAMEIFSILSSSAALLGFIFAPKCYIIFLKPDKNVLHGIRDNSHRGRNYLN", "length": 861, "header": "tr|A0A9J7JK65-1|A0A9J7JK65_CRIGR Isoform 1 of Vomeronasal type-2 receptor 116 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100763896 PE=3 SV=1 CANONICAL=A0A9J7JK65-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JK65-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK65/entry", "sequence": { "sequence": "MFSWSFIPWILQIPNLVCAFGNSECYFRIKDFSHDGNVMIGAFFPLYYYYTNKKIPHKNLPNHYEDLYLQYKFKNYQFVLALVFAIEEINRNPHLLPNTSLGFDLHNIPFSEKNTLMNAFIWLTGVNGDIVNYNCKLEQKSAAALTGTSFAISAHMGTLLQLYKIPQLTFGPFDSILGDRAQFTSLYQMAPKDTYLPRGIVSLMLHFKWSWVGLLLTDDHRGMQILSDLKEEMKKNRVCVAFVELISGTWNSFSHKFWKSLGKIEDSSANVIIIFGDTDSLQGLMKNIGQKLTTWKVWIMNSQWDVTNHNDYFMLDSFHGSLTFSHHYEEMVDFSNFIQTVHPSKYPEDTYLPKLWHLFFKCPFSKINCKLLDNCQPNASLDLLPKQNFDTAMSEESYYIYNAVYSVAHSLHKLILKHIQLQQSENGEENIFLPWQLHPFLQNNYMNNHVGSHMVMDMNSKLDSKYDIINFWNFPKGMGLKVKVGSFSPYAPHGQELSLSNHLIQWPARFTEIPKSVCYKLCEPGFRRTVIQGKAACCFDCISCPDNEISNDTADMDHCVKCPESHYANTERNHCLQKTVTFLHFEDPLGMALSSTALCFSAITATVLGIFVKHRDTPIVKANNRALSYILLITLIICFLSSLLFIGQPNTATCILQQTTFGIVFTVALSTVLAKALTVVIAFKVTFPGKWMRWLMISRATNYIIPIFTLLQIILCGIWLGTSPPFVDQDSHAQHGHIIILCNKGSAIAFHCVLGYLCSLAIGSYIMAFLSRNLPDKFNEAKFLTFSMLVFFSVWVTFLPVYHSTKGTIMVAMEIFSILSSSAALLGFIFAPKCYIIFLKPDKNVLHGIRDNSHRGRNYLN", "length": 861, "header": "tr|A0A9J7JK65-1|A0A9J7JK65_CRIGR Isoform 1 of Vomeronasal type-2 receptor 116 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100763896 PE=3 SV=1 CANONICAL=A0A9J7JK65-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JK65", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK65" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JK65", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK65" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100763896", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763896", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JK65", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK65" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JK65", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK65" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 378, "end_pos": 380, "annotation": "n_glycosylation_sequon" }, { "start_pos": 551, "end_pos": 553, "annotation": "n_glycosylation_sequon" }, { "start_pos": 98, "end_pos": 100, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JK65", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK65" }, { "id": "PS50259", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50259" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 3 profile", "eco_id": "ECO_0000259", "start_pos": 589, "end_pos": 853, "start_aa": "Leu", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 378, "end_pos": 380 }, { "start_pos": 551, "end_pos": 553 }, { "start_pos": 98, "end_pos": 100 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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} ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JKV5-1", "uniprot_ac": "A0A9J7JKV5", "uniprot_id": "A0A9J7JKV5_CRIGR", "mass": { "chemical_mass": 24726.0, "monoisotopic_mass": 24726.0 }, "refseq": { "ac": "XP_003509974", "name": "calcium-binding protein 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003509974" }, "gene_names": [ { "name": "Cabp2", "type": "recommended", "evidence": [ { "id": "A0A9J7JKV5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKV5" } ] }, { "name": "Cabp2", "type": "synonym", "evidence": [ { "id": "XP_003509974", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003509974" } ] } ], "protein_names": [ { "name": "Calcium-binding protein 2 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7JKV5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKV5/entry#names_and_taxonomy" } ] }, { "name": "calcium-binding protein 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003509974", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003509974" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614797.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003509974", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003509974" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKV5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKV5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cabp2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKV5", "locus": {} } ], "crossref": [ { "id": "A0A9J7JKV5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JKV5", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00051", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00051", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100757813", "url": "https://www.ncbi.nlm.nih.gov/gene/100757813", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018247", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018247", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043582", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043582", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100757813", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757813", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LVQNCSM", "url": "https://omabrowser.org/oma/group/LVQNCSM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JKV5", "url": "https://www.orthodb.org/?gene=A0A9J7JKV5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45917", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45917", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45917:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45917:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13499", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13499", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003509974", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003509974", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JK72", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK72", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JK72-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK72-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JKV5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKV5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JKV5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKV5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K4D4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4D4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K4D4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4D4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVQEPMGNCAKRPWSGGPKERWQWPRAPLGSSSPSPGPRAEEQEGTQGYSVLSSLVGPACIFLRPSIAATQLDRELRPEEIEELQAAFQEFDRDRDGYIGYRELGACMRTLGYMPTEMELIEISQQISGGKVDFEDFVELMGPKLLAETADMIGVRELRDAFREFDTNGDGCISVGELRAALKALLGERLSQREVDEILQDIDLNGDGLVDFEEFVRMMSR", "length": 221, "header": "tr|A0A9J7JKV5-1|A0A9J7JKV5_CRIGR Isoform 1 of Calcium-binding protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Cabp2 PE=4 SV=1 CANONICAL=A0A9J7JKV5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JK72-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK72/entry", "sequence": { "sequence": "MSMALPEGPADGSLPEEDSSPSTDTPGPSQDLASPNARRRALLRELEAQVQAAYGQDRELRPEEIEELQAAFQEFDRDRDGYIGYRELGACMRTLGYMPTEMELIEISQQISGGKVDFEDFVELMGPKLLAETADMIGVRELRDAFREFDTNGDGCISVGELRAALKALLGERLSQREVDEILQDIDLNGDGLVDFEEFVRMMSR", "length": 205, "header": "tr|A0A9J7JK72-1|A0A9J7JKV5_CRIGR Computationally mapped isoform of Calcium-binding protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Cabp2 PE=4 SV=1 CANONICAL=A0A9J7JKV5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JKV5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKV5/entry", "sequence": { "sequence": "MVQEPMGNCAKRPWSGGPKERWQWPRAPLGSSSPSPGPRAEEQEGTQGYSVLSSLVGPACIFLRPSIAATQLDRELRPEEIEELQAAFQEFDRDRDGYIGYRELGACMRTLGYMPTEMELIEISQQISGGKVDFEDFVELMGPKLLAETADMIGVRELRDAFREFDTNGDGCISVGELRAALKALLGERLSQREVDEILQDIDLNGDGLVDFEEFVRMMSR", "length": 221, "header": "tr|A0A9J7JKV5-1|A0A9J7JKV5_CRIGR Isoform 1 of Calcium-binding protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Cabp2 PE=4 SV=1 CANONICAL=A0A9J7JKV5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K4D4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4D4/entry", "sequence": { "sequence": "MVQEPMGNCAKRPWSGGPKDRELRPEEIEELQAAFQEFDRDRDGYIGYRELGACMRTLGYMPTEMELIEISQQISGGKVDFEDFVELMGPKLLAETADMIGVRELRDAFREFDTNGDGCISVGELRAALKALLGERLSQREVDEILQDIDLNGDGLVDFEEFVRMMSR", "length": 168, "header": "tr|A0A9J7K4D4-1|A0A9J7K4D4_CRIGR Computationally mapped isoform of Calcium-binding protein 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Cabp2 PE=4 SV=1 CANONICAL=A0A9J7JKV5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JK72", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK72" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JK72", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK72" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100757813", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757813", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0R4IU57-1", "protein_name": "Calcium-binding protein 2a", "gene_name": "cabp2a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MMGTKPSKRGSMKKGVPPLEGSGLPLAQAMLGGSGDAAAEDDEDEELREGKQFEEPICALVQNCTMLHNIVGPACIFLRQSFVQAQLDRDLRPEEIEELKEAFREFDKDKDGFISCKDLGECMRTMGYMPTEMELIELSQQICGGRVDFEDFVDLMGPKMLAETADMIGVKELRDAFREFDSNGDGQISLAELREAMKKLMGEQLNHREIDEILRDVDLNGDGLVDFEEFVRMMSR", "length": 236 }, "evidence": [ { "id": "A0A9J7JKV5", "url": "https://omabrowser.org/oma/group/A0A9J7JKV5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9JLK4-1", "protein_name": "Calcium-binding protein 2", "gene_name": "Cabp2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGNCAKTPWHRGSKERWQWPGSPLGGSRPSPGPRTEEQEGTQGYSVLGSLVGPACIFLRPSIAATQLDRELRPEEIEELQIAFQEFDRDRDGYIGYRELGACMRTLGYMPTEMELIEISQQISGGKVDFEDFVELMGPKLLAETADMIGVRELRDAFREFDTNGDGCISVGELRAALKALLGERLSQREVDEILQDIDLNGDGLVDFEEFVRMMSR", "length": 216 }, "evidence": [ { "id": "A0A9J7JKV5", "url": "https://omabrowser.org/oma/group/A0A9J7JKV5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NPB3-1", "protein_name": "Calcium-binding protein 2", "gene_name": "CABP2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGNCAKRPWRRGPKDPLQWLGSPPRGSCPSPSSSPKEQGDPAPGVQGYSVLNSLVGPACIFLRPSIAATQLDRELRPEEIEELQVAFQEFDRDRDGYIGCRELGACMRTLGYMPTEMELIEISQQISGGKVDFEDFVELMGPKLLAETADMIGVRELRDAFREFDTNGDGRISVGELRAALKALLGERLSQREVDEILQDVDLNGDGLVDFEEFVRMMSR", "length": 220 }, "evidence": [ { "id": "A0A9J7JKV5", "url": "https://omabrowser.org/oma/group/A0A9J7JKV5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKV5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKV5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "calcium channel regulator activity", "id": "GO:0005246", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005246", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKV5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKV5" } ], "pmid": "" }, { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKV5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKV5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "visual perception", "id": "GO:0007601", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007601", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKV5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKV5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JKV5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKV5" }, { "id": "PS50222", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50222" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EF-hand", "eco_id": "ECO_0000259", "start_pos": 79, "end_pos": 114, "start_aa": "Glu", "end_aa": "Met", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JK78-1", "uniprot_ac": "A0A9J7JK78", "uniprot_id": "A0A9J7JK78_CRIGR", "mass": { "chemical_mass": 97187.0, "monoisotopic_mass": 97187.0 }, "refseq": { "ac": "XP_003514279", "name": "vomeronasal type-2 receptor 116-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514279" }, "gene_names": [ { "name": "LOC100752980", "type": "recommended", "evidence": [ { "id": "A0A9J7JK78", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK78" } ] }, { "name": "LOC100752980", "type": "synonym", "evidence": [ { "id": "XP_003514279", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514279" } ] } ], "protein_names": [ { "name": "Vomeronasal type-2 receptor 116-like", "type": "synonym", "evidence": [ { "id": "A0A9J7JK78", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK78/entry#names_and_taxonomy" } ] }, { "name": "vomeronasal type-2 receptor 116-like", "type": "synonym", "evidence": [ { "id": "XP_003514279", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514279" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003616448.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003514279", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514279" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JK78", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK78" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100752980", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK78", "locus": {} } ], "crossref": [ { "id": "A0A9J7JK78", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JK78", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd06365", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06365", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd15283", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15283", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100752980", "url": "https://www.ncbi.nlm.nih.gov/gene/100752980", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000068", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000068", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000337", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000337", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001828", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001828", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004073", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004073", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011500", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011500", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017978", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017978", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028082", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028082", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038550", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038550", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752980", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752980", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JK78", "url": "https://www.orthodb.org/?gene=A0A9J7JK78", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24061", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24061", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24061:SF409", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24061:SF409", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00003", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00003", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01094", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01094", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07562", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07562", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003514279", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514279", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JK78", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK78", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JK78-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK78-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MINMFSLTFVFLVLRFSFLFCTLTDPKCFLRIKDKENQDGDKELDCFFSIYTVGGHMKNDHFSGNLDKQLTTKNIHLILSLYFAIEEINRDPHILPNISLLVKVECKLLADRRKISLSSKRGDYFPNYHCRKQKRYLVVLTGPMWLPAAMLGPLLYISRLPELYYGPFHPLLSNHEHFPSLYQMDIKDTSVSVAMVSLAVYFSWNWVGLIISDDDLGLQFSSELRKEMQRHDICLAFVTIITYDIKLFFKRVSMYYNQIMMSSAKVVIIYGDKDSLLQMNLRLWQFVDIRRIWVTTSQWDMITSKGEFLFNSFHGTLSFSHHYSEIAGFKKFMQTVHPSNYTNSISLAKLWWIYFNCSLSSTNCKKLKKCSGKMLLEWLSRYQFEMSMSDTSYKLYNAVYAVAHSLHELLLHQVDTQSETTGKGLEFDSLQVVSFLRNAQFVNPAGDIVNMNKKANLDIEYDIFYTGNFIQMYGLKVKIGKFTQYLPHPQQLLVSDEMIEWATDIRQTPPSICSTPCSPGFRKSLQDGKSICCFDCIPCSENEISNMSDMDYCLKCPDEQYANMEGTHCLSKIVTYLSYKDPIGMILACLALCFSALTAAIFGVFMRNQDTPIVKANNRNLSYCLLMSLISCFLCCLLFIGQPQVATCIMQPTIFAVVFTVAVSTVLAKTITVVLAFKVTAPGKKMRWLLISGASNLIIPICTMIQLILCGIWVGTSPPFVDIDVHIEFGRILIVCNKGSVIAFYLVLGYLGFIALASFTIAFLARNLPDTFNEAKLLTISTVVFCSVWITFLPVYHSTKGKATVVVEVFCILASSAGLLLCIFAPKCYVILLKPEKNSFCKIRNTHAKVKNGY", "length": 854, "header": "tr|A0A9J7JK78-1|A0A9J7JK78_CRIGR Isoform 1 of Vomeronasal 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"https://www.uniprot.org/uniprotkb/A0A8C2M4W8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M4W8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4W8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H1Y8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1Y8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H1Y8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1Y8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JKA9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKA9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JKA9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKA9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JS97", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JS97", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JS97-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JS97-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K9R6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9R6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K9R6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9R6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEASSLERQSPRVTSCLAHSLCPREPSLQTTAVVSMGSADHQFNLAELLSQNYSLREGCAEAPRCPDKPEEELDKDFIAQSSDMPLDELLALYGYESSDPISEQESEGGDTAPTLPDMTLDKEQIAKDLLSGEEEEETQSSADDLTPSVTSHEASDLFHNQSGSRFLAGDNVPGSSASSDTEEDALPANKCKKEIMVGPQFQADLNILHLNRHCDKIYENEDQLLWSPSVLPEREVEEFLYRAVKRRWQEMAGPQIPEGEVVKDSEQALYELVKCNFNVEEALRRLRFNVKVIRDGLCAWSEEECRNFEHGFRVHGKNFHLIQANKVRTRSVGECVEYYYLWKKSERYDYFAQQTRLGRRKFVSSGTTDAEQDLDGLDSDGPARLRPEQESEAGVPMEQPSVDVAAGGLDQPGAGSDHLLSSEPGPHPFEQLNEPPAVASLQQPSSLASPADLSPVVAAAPAAATPAPEPGTSPRLAVDLALPEELPLVSSPVDLSEDTAEPMAPAQVALSVTEFGLIGIGDVNPFLTGHPTCPASTLRSEPLSQCNVMTC", "length": 552, "header": "tr|A0A9J7JKA9-1|A0A9J7JKA9_CRIGR Isoform 1 of Mesoderm induction early response protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Mier2 PE=4 SV=1 CANONICAL=A0A9J7JKA9-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M4W8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4W8/entry", "sequence": { "sequence": "MAEASSLERQSPRVTSCLAHSLCPREPSLQTTAVVSMGSADHQFNLAELLSQNYSLREGCAEAPRCPDKPEEELDKDFIAQSSDMPLDELLALYGYESSDPISEQESEGGDTAPTLPDMTLDKEQIAKDLLSGEEEEETQSSADDLTPSVTSHEASDLFHNQTRFLAGDNVPGSSASSDTEEDALPANKCKKEIMVGPQFQADLNILHLNRHCDKIYENEDQLLWSPSVLPEREVEEFLYRAVKRRWQEMAGPQIPEGEVVKDSEQALYELVKCNFNVEEALRRLRFNVKVIRDGLCAWSEEECRNFEHGFRVHGKNFHLIQANKVRTRSVGECVEYYYLWKKSERYDYFAQQTRLGRRKFVSSGTTDAEQDLDGLDSDGPARLRPEQESEAGVPMEQPSVDVAAGGLDQPGAGSDHLLSSEPGPHPFEQLNEPPAVASLQQPSSLASPADLSPVVAAAPAAATPAPEPGTSPRLAVDLALPEELPLVSSPVDLSEDTAEPMAPAQVALSVTEFGLIGIGDVNPFLTGHPTCPASTLRSEPLSQCNVMTC", "length": 550, "header": "tr|A0A8C2M4W8-1|A0A8C2M4W8_CRIGR Computationally mapped isoform of Mesoderm induction early response protein 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Mier2 PE=4 SV=1 CANONICAL=A0A9J7JKA9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H1Y8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1Y8/entry", "sequence": { "sequence": "MGSADHQFNLAELLSQNYSLREGCAEAPRCPDKPEEELDKDFIAQSSDMPLDELLALYGYESSDPISEQESEGGDTAPTLPDMTLDKEQIAKDLLSGEEEEETQSSADDLTPSVTSHEASDLFHNQSGSRFLAGDNVPGSSASSDTEEDALPANKCKKEIMVGPQFQADLNILHLNRHCDKIYENEDQLLWSPSVLPEREVEEFLYRAVKRRWQEMAGPQIPEGEVVKDSEQALYELVKCNFNVEEALRRLRFNVKVIRDGLCAWSEEECRNFEHGFRVHGKNFHLIQANKVRTRSVGECVEYYYLWKKSERYDYFAQQTRLGRRKFVSSGTTDAEQDLDGLDSDGPARLRPEQESEAGVPMEQPSVDVAAGGLDQPGAGSDHLLSSEPGPHPFEQLNEPPAVASLQQPSSLASPADLSPVVAAAPAAATPAPEPGTSPRLAVDLALPEELPLVSSPVDLSEDTAEPMAPAQVALSVTEFGLIGIGDVNPFLTGHPTCPASTLRSEPLSQCNVMTC", "length": 516, "header": "tr|A0A9J7H1Y8-1|A0A9J7H1Y8_CRIGR Computationally mapped isoform of Mesoderm induction early response protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Mier2 PE=4 SV=1 CANONICAL=A0A9J7JKA9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JKA9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKA9/entry", "sequence": { "sequence": "MAEASSLERQSPRVTSCLAHSLCPREPSLQTTAVVSMGSADHQFNLAELLSQNYSLREGCAEAPRCPDKPEEELDKDFIAQSSDMPLDELLALYGYESSDPISEQESEGGDTAPTLPDMTLDKEQIAKDLLSGEEEEETQSSADDLTPSVTSHEASDLFHNQSGSRFLAGDNVPGSSASSDTEEDALPANKCKKEIMVGPQFQADLNILHLNRHCDKIYENEDQLLWSPSVLPEREVEEFLYRAVKRRWQEMAGPQIPEGEVVKDSEQALYELVKCNFNVEEALRRLRFNVKVIRDGLCAWSEEECRNFEHGFRVHGKNFHLIQANKVRTRSVGECVEYYYLWKKSERYDYFAQQTRLGRRKFVSSGTTDAEQDLDGLDSDGPARLRPEQESEAGVPMEQPSVDVAAGGLDQPGAGSDHLLSSEPGPHPFEQLNEPPAVASLQQPSSLASPADLSPVVAAAPAAATPAPEPGTSPRLAVDLALPEELPLVSSPVDLSEDTAEPMAPAQVALSVTEFGLIGIGDVNPFLTGHPTCPASTLRSEPLSQCNVMTC", "length": 552, "header": "tr|A0A9J7JKA9-1|A0A9J7JKA9_CRIGR Isoform 1 of Mesoderm induction early response protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Mier2 PE=4 SV=1 CANONICAL=A0A9J7JKA9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JS97-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JS97/entry", "sequence": { "sequence": "MAEASSLERQSPRVTSCLAHSLCPREPSLQTTAVVSMGSADHQFNLAELLSQNYSLREGCAEAPRCPDKPEEELDKDFIAQSSDMPLDELLALYGYESSDPISEQESEGGDTAPTLPDMTLDKIAKDLLSGEEEEETQSSADDLTPSVTSHEASDLFHNQSGSRFLAGDNVPGSSASSDTEEDALPANKCKKEIMVGPQFQADLNILHLNRHCDKIYENEDQLLWSPSVLPEREVEEFLYRAVKRRWQEMAGPQIPEGEVVKDSEQALYELVKCNFNVEEALRRLRFNVKVIRDGLCAWSEEECRNFEHGFRVHGKNFHLIQANKVRTRSVGECVEYYYLWKKSERYDYFAQQTRLGRRKFVSSGTTDAEQDLDGLDSDGPARLRPEQESEAGVPMEQPSVDVAAGGLDQPGAGSDHLLSSEPGPHPFEQLNEPPAVASLQQPSSLASPADLSPVVAAAPAAATPAPEPGTSPRLAVDLALPEELPLVSSPVDLSEDTAEPMAPAQVALSVTEFGLIGIGDVNPFLTGHPTCPASTLRSEPLSQCNVMTC", "length": 550, "header": "tr|A0A9J7JS97-1|A0A9J7JS97_CRIGR Computationally mapped isoform of Mesoderm induction early response protein 2 isoform X4 OS=Cricetulus griseus OX=10029 GN=Mier2 PE=4 SV=1 CANONICAL=A0A9J7JKA9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K9R6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9R6/entry", "sequence": { "sequence": "MAEASSLERQSPRVTSCLAHSLCPREPSLQTTAVVSMGSADHQFNLAELLSQNYSLREGCAEAPRCPDKPEEELDKDFIAQSSDMPLDELLALYGYESSDPISEQESEGGDTAPTLPDMTLDKIAKDLLSGEEEEETQSSADDLTPSVTSHEASDLFHNQTRFLAGDNVPGSSASSDTEEDALPANKCKKEIMVGPQFQADLNILHLNRHCDKIYENEDQLLWSPSVLPEREVEEFLYRAVKRRWQEMAGPQIPEGEVVKDSEQALYELVKCNFNVEEALRRLRFNVKVIRDGLCAWSEEECRNFEHGFRVHGKNFHLIQANKVRTRSVGECVEYYYLWKKSERYDYFAQQTRLGRRKFVSSGTTDAEQDLDGLDSDGPARLRPEQESEAGVPMEQPSVDVAAGGLDQPGAGSDHLLSSEPGPHPFEQLNEPPAVASLQQPSSLASPADLSPVVAAAPAAATPAPEPGTSPRLAVDLALPEELPLVSSPVDLSEDTAEPMAPAQVALSVTEFGLIGIGDVNPFLTGHPTCPASTLRSEPLSQCNVMTC", "length": 548, "header": "tr|A0A9J7K9R6-1|A0A9J7K9R6_CRIGR Computationally mapped isoform of Mesoderm induction early response protein 2 isoform X5 OS=Cricetulus griseus OX=10029 GN=Mier2 PE=4 SV=1 CANONICAL=A0A9J7JKA9-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 466, "start_aa": "Thr", "end_pos": 466, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr466", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKA9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKA9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKA9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKA9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100774581", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774581", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKA9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKA9" } ], "pmid": "" }, { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKA9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKA9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKA9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKA9" } ], "pmid": "" }, { "name": "protein-containing complex", "id": "GO:0032991", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032991", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKA9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKA9" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKA9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKA9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "transcription corepressor 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"MGNLPGTKSLKKKKAVPLPRDYKHKLPQTRTVNMEQQCGLITGDMEPVPLKNISVNLCINDFVAGVSATLNYENEEEVPVEAIFVFPMDEDSAVYSFEALVDGKKIVAELQEKMQAQRNYEDALSQGHQAYLLEEDDYSRDVFSCNIGNLLPGAKVGVTLRYVQELPLDTDGALRYVLPAILNPRYQLSEQSANSSLNMKTPIVPLEALPYTLSMVATVTSQHGIERVHSNCSLGPIQYLADGKTSAQVSLAEGHKFDRDVELLIYYSEVHSPSVAVEMGMQDMKPDSLMGSPSAMVSFYPDLPEVEGSRACGEFVFLMDRSGSMGSRLSHHNDSQLRIEAAKETLLLLLKSLPMGCYFNIYGFGSSYEKFFPESVKYTQETMEEAVKRVKDLKADLGGTEILTPLLNIYKGPSIPEHPLQLFVFTDGEVDDTFSVIKEVKLNSKKHRCFSFGIGEGASTSLIKGIARVSGGTAEFITGKGRMQTKALGSLKFALNCSVEDISVSWELPPGLSASMLSSEQTVIFRGQRLIIYAQLTGTMPQVESSGKVCFKYTLKGKSLENRVTFSLQPKTNASFTIHRLAAKSLIQMKDLGSHETSDGEKEDVLNISIQSGVLSSFTAFIAVNKELNQPVQGPLAPRVIPRPMTFSYLPTLCQYSSGSRPSYDSKVELYSILCEDISSKGHEIYDDVCCEGYFSLDCMEDTESMSMMNNSDFSTKNPKLQNDHKGFGENAILHLISLQKANGSWELDEELTEILGTSLEDIKAANPAKDQDPSVWATVLAVLWLHANGKDLKCEWELLERKAVAWLHDHADSSNPMLVQAANSFLKLSVTPDDLVF", "length": 838, "header": "tr|A0A9J7JKC1-1|A0A9J7JKC1_CRIGR Isoform 1 of von Willebrand factor A domain-containing protein 5A OS=Cricetulus griseus OX=10029 GN=LOC100759681 PE=4 SV=1 CANONICAL=A0A9J7JKC1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_003614083.1) annotated using gene prediction method: Gnomon. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKC4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKC4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100752743", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752743", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A2I3BRV4-1", "protein_name": "Olfactory receptor family 10 subfamily B member 1", "gene_name": "Or10b1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": 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Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 4 indels internal stop codons :: corrected 1 genomic stop codons ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027275381.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027275381", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027275381" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKC7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKC7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fam89a", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKC7", "locus": {} } ], "crossref": [ { "id": "100770549", "url": "https://www.ncbi.nlm.nih.gov/gene/100770549", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:100770549", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770549", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JKC7", "url": "https://www.orthodb.org/?gene=A0A9J7JKC7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46949", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46949", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46949:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46949:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_027275381", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027275381", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JKC7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKC7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JKC7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKC7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSGAGSAGTARGXRVDGLPPLPKSLSGLLHSAAGGGWRHLEAVRLYAQKSLIQNELSRGAAGGGGXRAAGTRTKPRNLDAMLALLRKTVGLRQLDMSLLCQLYSLYESIQEYKGACQAASSLDCTYALENGFFDEEEDFQEQGSPQEGQGXGLPGTCHYLXYLSSSDCVLESI", "length": 173, "header": "tr|A0A9J7JKC7-1|A0A9J7JKC7_CRIGR Isoform 1 of Protein FAM89A OS=Cricetulus griseus OX=10029 GN=Fam89a PE=3 SV=1 CANONICAL=A0A9J7JKC7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JKC7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKC7/entry", "sequence": { "sequence": "MSGAGSAGTARGXRVDGLPPLPKSLSGLLHSAAGGGWRHLEAVRLYAQKSLIQNELSRGAAGGGGXRAAGTRTKPRNLDAMLALLRKTVGLRQLDMSLLCQLYSLYESIQEYKGACQAASSLDCTYALENGFFDEEEDFQEQGSPQEGQGXGLPGTCHYLXYLSSSDCVLESI", "length": 173, "header": "tr|A0A9J7JKC7-1|A0A9J7JKC7_CRIGR Isoform 1 of Protein FAM89A OS=Cricetulus griseus OX=10029 GN=Fam89a PE=3 SV=1 CANONICAL=A0A9J7JKC7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027265406", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027265406" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKS5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKS5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113835035", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKS5", "locus": {} } ], "crossref": [ { "id": "A0A9J7JKS5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JKS5", "database": "AlphaFoldDB", "categories": [] }, { "id": "113835035", "url": "https://www.ncbi.nlm.nih.gov/gene/113835035", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:113835035", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113835035", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_027265406", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027265406", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JKS5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKS5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JKS5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKS5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPEDGAASGRPAAGRTRRVAPLGTRSAAMQPGHSRAAHPASRRAEPAAGERAGGRRKIRTGAAERGGDGAGRERRGRAALRTGATPGTGDPFGQRLRLPQGGAGGQRRESGTRSGLLFRIRHRPNPPVGAQVAREGPRAAATPAQRQPAESSPTLECPGQVPLQSRLTPLPPGCAPRSSARRRTELARGLDGGLQEGSGGAQRGWQERPGPQCRSP", "length": 216, "header": "tr|A0A9J7JKS5-1|A0A9J7JKS5_CRIGR Isoform 1 of Uncharacterized protein LOC113835035 OS=Cricetulus griseus OX=10029 GN=LOC113835035 PE=4 SV=1 CANONICAL=A0A9J7JKS5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JKS5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKS5/entry", "sequence": { "sequence": "MPEDGAASGRPAAGRTRRVAPLGTRSAAMQPGHSRAAHPASRRAEPAAGERAGGRRKIRTGAAERGGDGAGRERRGRAALRTGATPGTGDPFGQRLRLPQGGAGGQRRESGTRSGLLFRIRHRPNPPVGAQVAREGPRAAATPAQRQPAESSPTLECPGQVPLQSRLTPLPPGCAPRSSARRRTELARGLDGGLQEGSGGAQRGWQERPGPQCRSP", "length": 216, "header": "tr|A0A9J7JKS5-1|A0A9J7JKS5_CRIGR Isoform 1 of Uncharacterized protein LOC113835035 OS=Cricetulus griseus OX=10029 GN=LOC113835035 PE=4 SV=1 CANONICAL=A0A9J7JKS5-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 142, "start_aa": "Thr", "end_pos": 142, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr142", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 85, "start_aa": "Thr", "end_pos": 85, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr85", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKS5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKS5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113835035", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113835035", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 85, 142 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], 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eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027276119", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027276119" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKS7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKS7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fap", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKS7", "locus": {} } ], "crossref": [ { "id": "A0A9J7JKS7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JKS7", "database": "AlphaFoldDB", "categories": [] }, { "id": "100767303", "url": "https://www.ncbi.nlm.nih.gov/gene/100767303", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001375", 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This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027276319.1. 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"https://www.ebi.ac.uk/interpro/entry/IPR008916", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008919", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008919", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036875", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036875", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045345", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045345", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050195", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050195", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113836300", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113836300", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JKW6", "url": "https://www.orthodb.org/?gene=A0A9J7JKW6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR40389", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR40389", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR40389:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR40389:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00098", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00098", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00607", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00607", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14787", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14787", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF19317", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19317", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027276319", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027276319", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JKW6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKW6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JKW6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKW6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWSDELQPVRGSDDSESSGDEVLDTEEEAEQDEEADKYEEERYHPDDHIQSSKKPRRRQLQTALSQVVPSAPPPYETHPKSYSFLPEKVKRKLRLAFPVFEGIEGEQMHAPVEYNQIKELAESVRKYGGTANFTLAQLDRLALNALTPSDWQMVAKAALVSMGQYMEWKALWHEAVQEQARANATALTPEQQLWTFNLLTGQGRFAADQTNCHWGAYPQIANAAIRAWKALSERRGGVDNQLTKIIQGTQEPFSDFVARMTEAVGRIFGDPEQAAPLVEQLIFEQATQECRTAIAPRKNKGLQDWLRVCRELGGPLTNAGLAAAILQSQKHPLXGPDKRTCFRCGKAGHLRKDCKMPDRERGPPTLCTRCGKGYNKAYQCRSVRDIKGRILPPIETTINEVPKNGAAGPQSQGPPKYGNRFTRVTDGTPPPESEQEWTCEPPPTSY", "length": 446, "header": "tr|A0A9J7JKW6-1|A0A9J7JKW6_CRIGR Isoform 1 of LOW QUALITY PROTEIN: igE-binding protein-like OS=Cricetulus griseus OX=10029 GN=LOC113836300 PE=4 SV=1 CANONICAL=A0A9J7JKW6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JKW6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKW6/entry", "sequence": { "sequence": "MWSDELQPVRGSDDSESSGDEVLDTEEEAEQDEEADKYEEERYHPDDHIQSSKKPRRRQLQTALSQVVPSAPPPYETHPKSYSFLPEKVKRKLRLAFPVFEGIEGEQMHAPVEYNQIKELAESVRKYGGTANFTLAQLDRLALNALTPSDWQMVAKAALVSMGQYMEWKALWHEAVQEQARANATALTPEQQLWTFNLLTGQGRFAADQTNCHWGAYPQIANAAIRAWKALSERRGGVDNQLTKIIQGTQEPFSDFVARMTEAVGRIFGDPEQAAPLVEQLIFEQATQECRTAIAPRKNKGLQDWLRVCRELGGPLTNAGLAAAILQSQKHPLXGPDKRTCFRCGKAGHLRKDCKMPDRERGPPTLCTRCGKGYNKAYQCRSVRDIKGRILPPIETTINEVPKNGAAGPQSQGPPKYGNRFTRVTDGTPPPESEQEWTCEPPPTSY", "length": 446, "header": "tr|A0A9J7JKW6-1|A0A9J7JKW6_CRIGR Isoform 1 of LOW QUALITY PROTEIN: igE-binding protein-like OS=Cricetulus griseus OX=10029 GN=LOC113836300 PE=4 SV=1 CANONICAL=A0A9J7JKW6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKW6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKW6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKW6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKW6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113836300", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113836300", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKW6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKW6" } ], "pmid": "" }, { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKW6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKW6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "viral process", "id": "GO:0016032", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016032", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKW6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKW6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 132, "end_pos": 134, "annotation": "n_glycosylation_sequon" }, { "start_pos": 183, "end_pos": 185, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JKW6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKW6" }, { "id": "PS50158", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50158" } ], "ann_type": 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eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003615236.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Apr 30, 2014 this sequence version replaced XP_003511857.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003511857", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003511857" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKW9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKW9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH15orf40", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKW9", "locus": {} } ], "crossref": [ { "id": "A0A9J7JKW9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JKW9", "database": "AlphaFoldDB", "categories": [] }, { "id": "100770476", "url": "https://www.ncbi.nlm.nih.gov/gene/100770476", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003746", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003746", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100770476", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770476", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JKW9", "url": "https://www.orthodb.org/?gene=A0A9J7JKW9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13420", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13420", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13420:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13420:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02594", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02594", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003511857", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003511857", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JKW9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKW9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JKW9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKW9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLQLVVGRSGSAPARFLSSSTMPKKAGTMSKGKNQTKEPETPPPPAGPVTTDPKGCVTIAIHAKPGSKQNAVTDLTTEAVGVAIAAPPSEGEANAELCRYLSKVLELRKSDVVLDKGGKSREKVVKLLASTTPEEVLEKLKKEAEKK", "length": 147, "header": "tr|A0A9J7JKW9-1|A0A9J7JKW9_CRIGR Isoform 1 of UPF0235 protein C15orf40 homolog OS=Cricetulus griseus OX=10029 GN=CUNH15orf40 PE=3 SV=1 CANONICAL=A0A9J7JKW9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JKW9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKW9/entry", "sequence": { "sequence": "MLQLVVGRSGSAPARFLSSSTMPKKAGTMSKGKNQTKEPETPPPPAGPVTTDPKGCVTIAIHAKPGSKQNAVTDLTTEAVGVAIAAPPSEGEANAELCRYLSKVLELRKSDVVLDKGGKSREKVVKLLASTTPEEVLEKLKKEAEKK", "length": 147, "header": "tr|A0A9J7JKW9-1|A0A9J7JKW9_CRIGR Isoform 1 of UPF0235 protein C15orf40 homolog OS=Cricetulus griseus OX=10029 GN=CUNH15orf40 PE=3 SV=1 CANONICAL=A0A9J7JKW9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKW9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKW9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKW9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKW9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100770476", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770476", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JKW9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKW9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 34, "end_pos": 36, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 34, "end_pos": 36 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JL01-1", "uniprot_ac": "A0A9J7JL01", "uniprot_id": "A0A9J7JL01_CRIGR", "mass": { "chemical_mass": 210656.0, "monoisotopic_mass": 210656.0 }, "refseq": { "ac": "XP_027276501", "name": "proline-rich protein 12 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027276501" }, "gene_names": [ { "name": "Prr12", "type": "recommended", "evidence": [ { "id": "A0A9J7JL01", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JL01" } ] }, { "name": "Prr12", "type": "synonym", "evidence": [ { "id": "XP_027276501", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027276501" } ] } ], "protein_names": [ { "name": "Proline-rich protein 12 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7JL01", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JL01/entry#names_and_taxonomy" } ] }, { "name": "proline-rich protein 12 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027276501", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027276501" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027276501", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027276501" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JL01", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JL01" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Prr12", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JL01", "locus": {} } ], "crossref": [ { "id": "100767720", "url": "https://www.ncbi.nlm.nih.gov/gene/100767720", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR025451", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025451", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052466", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052466", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100767720", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767720", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JL01", "url": "https://www.orthodb.org/?gene=A0A9J7JL01", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14709", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14709", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14709:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14709:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13926", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13926", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027276501", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027276501", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JL01", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JL01", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JL01-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JL01-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDRNYPSAGFGDPLGAGAGWSYERSAKASLVYGSSRTSHPETDILHRQAYAAPHPLQSYATNHHPAGLSGLFDTGLHHAGSAGPDASVMNLISALESRGPQPGPSASSLLSQFRSPSWQTAMHTPGPTELFISGALPGSSTFPSSSALSAYQHPASFGSRPFPVPSSLSLQDPPFSPPANGLLSPHDVLHLKPSQAPTVPSSLGFERLAGGGVLGPAGLGPAQTPPYRPGPPDPPPPPRHLPTQFNLLASSSAATAAEPSSPQLYNFSGAAPGPPPERALPRQDTVIKHYQRPASAQPPPPPPPTHSLQHYLSCGGSYPSMGHRASLACSPLGGGEPSPGAGEPSKGGPSGATAGAAGRATGPETAGGGGAGGGGGYRPIIQSPGYKTSKGGYGPATGGATRPPPPRSTATPKCQSLGGPAAYAAGKASGAGGAGGQAYSPGQPQGLLGPQGYGQGFGGGQAQDLSKGPSYSGGPPQPPSGPPPPGLATCQSYSPDQLQGQLYGVQGEPYPGPAAHSQGLPTASPSLSYSTGHSPALSGHGGGWGPSSLGGGGEASPSHIIRPLQSPPATGRPPGVGSPGAPGKYLSSVLASAPFLAPPGASSYAAGAGGYKGKGDGSELLAGPGGATTERTEDEEFLIQHLLQAPSPPRTSGADGLVGEDGPADASKGLGGSGGAGGPPGTPYELAKEDPQRYHLQSVIRTSASLDEGATAALELGLGRMKEKKKGPERGGETPEGLATSVVHYGAGAKELGAFLQKSPPPPPPTAQPTQPPPHGLLLEAGGPDLPMVLPPPPPQLLPSVLSHAPSPSPSAPKVGVHLLEPATRDGAPQPPPPPPPPPPSMPLQLEAHLRSHGLEPTAPSPRLRPEESLEPPGAMQELLGALEPLPPGPGDTGVGPPNSEGKDPAGAYRSPSPQGTKAPRFVPLTSICFPDSLLQDEERSFFPTMEEMFGGGAADDYGKAGQTEDDGDPKTGAGPPPGPPAYDPYGPYCGARASGAGPETPGLGLDPNKPPELPSTVNAEPLGLIQSGPHQSAPPPPPPPPPPPPVSEPKGGLTSPIFCSTKPKKLLKTSSFHLLRRRDPPFQTPKKLYAQEYEFEADEDKADVPADIRLNPRRLPDLVSSCRSRPALSPLGDIDFCPPNPGPDGPRRRGRKPTKAKRDGPPRPRGRPRIRPLEGPAIAGPASASITTDGAKKPRGRGRGRGRKAEEMGSTRLEPLKPLKIKLSVPKAGEGLGAPSNDAVSGVDHNSLDSNLTREKIEAKIKEVEEKQPEMKSGFMASFLDFLKSGKRHPPLYQAGLTPPLSPPKNVPASVPTRGLQPPPPTAPTVPHSASSGPFGLGGALEAAESEGLGLGCPSPCKRLDEELKRNLETLPSFSSDEEDSVAKNRDLQESISSAISALDDPPLTGPKDTSAPEEPPLGTGPTVSGPTPLPSLPSTNSNGTPGEAPLLEEKPPPTPPPAPTPQPAPPPPAVPALPSPAPLVTPVASSPPPPQPLPPPALPSPPPPAPTAVPPVAPPEEPVAPSPEDPEPPDARPLHLAKKQETAAVCGETDEEAGESGGEGIFRERDEFVIRAEDIPSLKLALQTGREPPPIWRVQKALLQKFTPEIKDGQRQFCATSNYLGYFGDAKNRYQRLYVKFLENVNKKDYVRVCARKPWHRPPLPVRRSGQTKGPTSVGGTSAPPSKVPAPPPKPETSEKVASEKPPELTPEPALLEPPAPEKPSPPRPVEKEKERERVTRGGDRPLRSERSTSGRQMRTDRSLAAGQSTTSRLSKARPTKVKAEPPPKKRKKWLKEAVGNASAGGGPGGSSSDSESSPGAPSEDERAVPGRLLKTRAMREMYRSYVEMLVSTALDPDMIQALEDTHDELYLPPMRKIDGLLNEHKKKVLKRLSLSPALQDALHTFPQLQVEQTGEGSPEEGAVRLRPAGEPYNRKTLSKLKRSVVRAQEFKVELEKSGYYTLYHSLHHYKYHTFLRCRDQTLAIEGGAEDLGQEEVVQQCMRNQPWLEQLFDSFSDLLAQAQAHSRCG", "length": 2027, "header": "tr|A0A9J7JL01-1|A0A9J7JL01_CRIGR Isoform 1 of Proline-rich protein 12 isoform X2 OS=Cricetulus griseus OX=10029 GN=Prr12 PE=4 SV=1 CANONICAL=A0A9J7JL01-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JL01-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JL01/entry", "sequence": { "sequence": "MDRNYPSAGFGDPLGAGAGWSYERSAKASLVYGSSRTSHPETDILHRQAYAAPHPLQSYATNHHPAGLSGLFDTGLHHAGSAGPDASVMNLISALESRGPQPGPSASSLLSQFRSPSWQTAMHTPGPTELFISGALPGSSTFPSSSALSAYQHPASFGSRPFPVPSSLSLQDPPFSPPANGLLSPHDVLHLKPSQAPTVPSSLGFERLAGGGVLGPAGLGPAQTPPYRPGPPDPPPPPRHLPTQFNLLASSSAATAAEPSSPQLYNFSGAAPGPPPERALPRQDTVIKHYQRPASAQPPPPPPPTHSLQHYLSCGGSYPSMGHRASLACSPLGGGEPSPGAGEPSKGGPSGATAGAAGRATGPETAGGGGAGGGGGYRPIIQSPGYKTSKGGYGPATGGATRPPPPRSTATPKCQSLGGPAAYAAGKASGAGGAGGQAYSPGQPQGLLGPQGYGQGFGGGQAQDLSKGPSYSGGPPQPPSGPPPPGLATCQSYSPDQLQGQLYGVQGEPYPGPAAHSQGLPTASPSLSYSTGHSPALSGHGGGWGPSSLGGGGEASPSHIIRPLQSPPATGRPPGVGSPGAPGKYLSSVLASAPFLAPPGASSYAAGAGGYKGKGDGSELLAGPGGATTERTEDEEFLIQHLLQAPSPPRTSGADGLVGEDGPADASKGLGGSGGAGGPPGTPYELAKEDPQRYHLQSVIRTSASLDEGATAALELGLGRMKEKKKGPERGGETPEGLATSVVHYGAGAKELGAFLQKSPPPPPPTAQPTQPPPHGLLLEAGGPDLPMVLPPPPPQLLPSVLSHAPSPSPSAPKVGVHLLEPATRDGAPQPPPPPPPPPPSMPLQLEAHLRSHGLEPTAPSPRLRPEESLEPPGAMQELLGALEPLPPGPGDTGVGPPNSEGKDPAGAYRSPSPQGTKAPRFVPLTSICFPDSLLQDEERSFFPTMEEMFGGGAADDYGKAGQTEDDGDPKTGAGPPPGPPAYDPYGPYCGARASGAGPETPGLGLDPNKPPELPSTVNAEPLGLIQSGPHQSAPPPPPPPPPPPPVSEPKGGLTSPIFCSTKPKKLLKTSSFHLLRRRDPPFQTPKKLYAQEYEFEADEDKADVPADIRLNPRRLPDLVSSCRSRPALSPLGDIDFCPPNPGPDGPRRRGRKPTKAKRDGPPRPRGRPRIRPLEGPAIAGPASASITTDGAKKPRGRGRGRGRKAEEMGSTRLEPLKPLKIKLSVPKAGEGLGAPSNDAVSGVDHNSLDSNLTREKIEAKIKEVEEKQPEMKSGFMASFLDFLKSGKRHPPLYQAGLTPPLSPPKNVPASVPTRGLQPPPPTAPTVPHSASSGPFGLGGALEAAESEGLGLGCPSPCKRLDEELKRNLETLPSFSSDEEDSVAKNRDLQESISSAISALDDPPLTGPKDTSAPEEPPLGTGPTVSGPTPLPSLPSTNSNGTPGEAPLLEEKPPPTPPPAPTPQPAPPPPAVPALPSPAPLVTPVASSPPPPQPLPPPALPSPPPPAPTAVPPVAPPEEPVAPSPEDPEPPDARPLHLAKKQETAAVCGETDEEAGESGGEGIFRERDEFVIRAEDIPSLKLALQTGREPPPIWRVQKALLQKFTPEIKDGQRQFCATSNYLGYFGDAKNRYQRLYVKFLENVNKKDYVRVCARKPWHRPPLPVRRSGQTKGPTSVGGTSAPPSKVPAPPPKPETSEKVASEKPPELTPEPALLEPPAPEKPSPPRPVEKEKERERVTRGGDRPLRSERSTSGRQMRTDRSLAAGQSTTSRLSKARPTKVKAEPPPKKRKKWLKEAVGNASAGGGPGGSSSDSESSPGAPSEDERAVPGRLLKTRAMREMYRSYVEMLVSTALDPDMIQALEDTHDELYLPPMRKIDGLLNEHKKKVLKRLSLSPALQDALHTFPQLQVEQTGEGSPEEGAVRLRPAGEPYNRKTLSKLKRSVVRAQEFKVELEKSGYYTLYHSLHHYKYHTFLRCRDQTLAIEGGAEDLGQEEVVQQCMRNQPWLEQLFDSFSDLLAQAQAHSRCG", "length": 2027, "header": "tr|A0A9J7JL01-1|A0A9J7JL01_CRIGR Isoform 1 of Proline-rich protein 12 isoform X2 OS=Cricetulus griseus OX=10029 GN=Prr12 PE=4 SV=1 CANONICAL=A0A9J7JL01-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1323, "start_aa": "Thr", "end_pos": 1323, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1323", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", 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"url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1462, "start_aa": "Thr", "end_pos": 1462, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1462", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1509, "start_aa": "Thr", "end_pos": 1509, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1509", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 766, "start_aa": "Thr", "end_pos": 766, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr766", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JL01", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JL01" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100767720", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767720", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 1252, "end_pos": 1254, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1440, "end_pos": 1442, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1799, "end_pos": 1801, "annotation": "n_glycosylation_sequon" }, { "start_pos": 266, "end_pos": 268, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], 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Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027264882", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264882" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JL34", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JL34" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tcerg1l", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JL34", "locus": {} } ], "crossref": [ { "id": "A0A9J7JL34", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JL34", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00201", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00201", "database": "CDD", "categories": [ "Protein Classification" ] 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"Protein Classification" ] }, { "id": "cge:103160765", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103160765", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JL34", "url": "https://www.orthodb.org/?gene=A0A9J7JL34", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15377", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15377", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15377:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15377:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01846", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01846", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23517", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23517", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": 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] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027264176", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264176" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JLH2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLH2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC118237694", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLH2", "locus": {} } ], "crossref": [ { "id": "A0A9J7JLH2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JLH2", "database": "AlphaFoldDB", "categories": [] }, { "id": "118237694", "url": "https://www.ncbi.nlm.nih.gov/gene/118237694", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:118237694", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118237694", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JLH2", "url": "https://www.orthodb.org/?gene=A0A9J7JLH2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "XP_027264176", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264176", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JLH2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLH2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JLH2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLH2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGCCQDKDHQTSDEHAREEVTDEGRQDNEVNLDNAGRRKQRSNESLLITVLWRRLSMFSRRGSSRSSKRLSDLTQKQESQIQERKREGSHKEPEKG", "length": 96, "header": "tr|A0A9J7JLH2-1|A0A9J7JLH2_CRIGR Isoform 1 of Testis-expressed protein 54-like OS=Cricetulus griseus OX=10029 GN=LOC118237694 PE=4 SV=1 CANONICAL=A0A9J7JLH2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JLH2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLH2/entry", "sequence": { "sequence": "MGCCQDKDHQTSDEHAREEVTDEGRQDNEVNLDNAGRRKQRSNESLLITVLWRRLSMFSRRGSSRSSKRLSDLTQKQESQIQERKREGSHKEPEKG", "length": 96, "header": "tr|A0A9J7JLH2-1|A0A9J7JLH2_CRIGR Isoform 1 of Testis-expressed protein 54-like OS=Cricetulus griseus OX=10029 GN=LOC118237694 PE=4 SV=1 CANONICAL=A0A9J7JLH2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JLH2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLH2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JLH2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLH2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:118237694", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118237694", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 43, "end_pos": 45, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 43, "end_pos": 45 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { 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} ], "protein_names": [ { "name": "Trinucleotide repeat-containing gene 18 protein", "type": "recommended", "evidence": [ { "id": "A0A9J7JLI7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLI7/entry#names_and_taxonomy" } ] }, { "name": "LOW QUALITY PROTEIN: trinucleotide repeat-containing gene 18 protein isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027269347", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269347" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 2 indels ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027269347", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269347" } ] }, { "annotation": "Chromatin reader involved in the silencing of endogenous retroviruses (ERV) class-I elements, such as LTR12. Specifically binds histone H3 trimethylated at 'Lys-9' (H3K9me3) deposited by SETB1 at class-I ERV and directly mediates recruitment of corepressor complexes, such as Sin3-type and N-Cor complexes, leading to ERV silencing.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JLI7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLI7#function" }, { "database": "UniProtKB", "id": "ARBA00094451", "url": "https://www.uniprot.org/uniprotkb/ARBA00094451#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JLI7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLI7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tnrc18", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLI7", "locus": {} } ], "crossref": [ { "id": "cd04714", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04714", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100768203", "url": "https://www.ncbi.nlm.nih.gov/gene/100768203", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001025", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001025", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043151", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043151", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048924", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048924", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052429", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052429", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768203", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768203", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JLI7", "url": "https://www.orthodb.org/?gene=A0A9J7JLI7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12505", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12505", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12505:SF21", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12505:SF21", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01426", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01426", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21744", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21744", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24912", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24912", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027269347", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269347", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JLI7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLI7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JLI7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLI7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDGRDFGPQRSVHGPPPPLLSGLAMDSHRVGAATAGRLPSSGLPGPLPPGKYMAGLNLHPHPGEAFLGSFVASGMGPSASSQGSPLSLPSALSFRSPTPSNLPMVQLWATHAHEGFSHLPSGLYPSYLHLNHLEPPSNGSPLLSQLGQPSIFDTQKDGFYLPAPGTLHSHTPSSRTPGGHSSVGPAKGSSREGAGKDRSGRGGDPPPLFGKKDPRAREEVSVPRGVVDLTQEARAEGRQDRGPSRLAERLSPFLAEAKAKGTLQPSTLSLCNGVVDAGLVAELGRGGAKEVARQEESARLLRRTEALLPTARPCGSPLPPPPPLPPKGPPAPPSSTPTGVYTVFREPGREHRVVAPTFVPSVEAFDERVGPIQIASQARDARAREREPGRPGVLQGPPGSPRLERPEVLREKSSVIRSLKRPPPSDGPPARSSRSSPDTRAYLPPKELLKPEADPRPCERAPRGSSSSAAQQAAKFFGLEPSRPPGPEHKWKPFELGNFATTQMAVLAAQHHHASRAEEEATVATASKKAYLDPGSTMPRASATCGRPGADLHPAAHGPGEASAMQSLIKYSGSFAREAVAVRPGGGGKKSPFGGLGTMKPEPIPTSAGPPRAQARLTHPGVPTAGGGRQLKRDPERPESAKAFGREGSGAQGEAEVRHPPVGIAVAVARQKDSGSSSRLGPGLVDQDRSLSLNNVKGHGRTDDDCDRTRHREDRLLGTRLDRDQEKLLRESKELADLARLHPTSCAPNGLNPNLMVTGGPTLAGSGRWSADPAAHLAAHPWLPRSGSTSMWLAGHPYGLGPPSLHQGMAPAFPPGLGSSLPSTYQFVRDPQSGQLVVIPSDHLPHFAELMERAAVPPLWPALYPPGRSPLHHAQQLQLFSQQHFLRQQELLYLQQQAAQALELQRSAQLVQERLKAQEHRTEMEEKVNKKSLETTGKAGLSATGPGLLPRKPTGLASGPTGTHGKAVSPPPSPRASPVTSLKAKVIQKVEDVSKPPAYTYPATPSSHPSSPPPASPPPTPGITRKEEAPENVVEKKDLELEKEAPSPFQALFTDIPPRYPFQALPPHYGRPYPFLLQPTAAADADGLAPDVPLPADGPERLALSPEDKPICLSPSKIPEPPRDSPEEQPLVDREVKAEVEDVEEGSTELPPLESPMALPVPETMVAVSPASGCGGGLLEAQALSTAGQGCREPSEASDFAQVAEPQIELPSRTEPRVAALELGTQLTPEPLVETKEEPVEVPLDVPMEGPMTEAGPEDSLPQPSLTEPQPSLELSDCDLPVPEGQCLNLETQEAAPALGSTCYLEETCSESLLPGLEDPLAGMNALAAAAELPQARPLPSLGTGVPTGEKLDTAPSLGLEHSFLQGITLLSEIAELELDRRGQEVAGAEPNLVVRPSLESLLAASSHMLKEVLDSPFSDPLKNLRLPRELNSNKKYSWMQKKEERMFAMKSSLEDMDALELDFRMRLAEVQRRYKEKQRELVKLQRRRDSGDRHEDAHRSMARRGPGRPRKRTHTPSALSPPCKRGKSHSGSGKLSSKSLLTSDDYELGTGIRKRHKGPEEDQDALIGMGKARSRNQSWDDHESSSDFMSQLKIKKKKMASDQEQLASKLDRALSLTKQDKLKSPFKFSDSPGGKSKASGGCGRFLTPYDSLLGKDRKALAKGLGLSLKPSREGKHKRAAKARKMEGGFKARGQPKPAHSPFASEVSSHSYNTDSDEDDEDFSKNEWSAQGPSSSKLTSSFLCGMVTKNSKPGTGPKLTKRSLAGPRTLKPKAASSRKQSFCLLLREARSSFSDSSEEDSFDQDDSSEEDDEEELEEEEEEEEEEEEEEAVGSYRLGAGEQALSPSLEESGLGLLARFAASALPSPVVGPPLSVVQLEAEQKARKKEERQSLMGTEFEYTDSDSEVKVPKQSPAGLLRPKKGVGEPGQSMAAPVPGTRASGPTSPDKTKLASEKGRKPRKIRGPKEPGFEAGPEASDDDLWTRRRSERIFLHDASAAVQAPSNTAPAPKPTRCGKGGAPSPRKDTGRAKDRKDPRKKKKGKEAGSAATLPPARVSALPDSRAPHTGPLATARRSKAKAKGKEVKKENRGKGGAVSKLMECMAAEEDFEPNQDSSFSEDEHLPGGGATERPLTPAPRSCIIDKDELKDGLRVLIPMDDKLLYAGHVHTVHSPDIYRVVVEGERGNRPHIYCLEQLLQEAIIDVRPASTRFLPQGTRIAAYWSQQYRCLYPGTVVRGLLDLEDDGDLITVEFDDGDTGRIPLSHIRLLPPDYKIQCAEPSPALLVPSAKRRSRKTSKDTGEGKEGATTGTQEATGAKARGRGRKPSAKAKGDRAAVLEEGATTDEVPSAPLALEPINTPSSKKSPPEPVDKRARAPKARSVSAQPSPMPPTFSSCPAPEPFGELPAPPAAPLINMPVTMPATRPKPKKARAAEGSGAKGPRRPGEEDELLVKLDHEGVMSPKSKKAKEALLLREDPGPGAWPESTGLLSLGSYPPAVGNSEPKATWPKALDGDLTQEPGPGLPLEDPGNSKNPDKAQAEQDGAEESETTTSSSSSSSTSSSSSSSSSSSSSSSSSSSSGSETEGEEDTEKSREDGRGAGGRTCSAASSRASSPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDDEAAPAPAAGPSTQQPALPTKVSKPPSKARSSAHSPGKKAPTATQPPPSPHQPPQPQQTLQPKTQAGAGAKSRPKKREGVHLPTTKELAKRQRLPSVENRPKIAAFLPARQLWKWFGKPTQRRGMKGKARKLFYKAIVRGKEMIRIGDCAVFLSAGRPNLPYIGRIQSMWESWGNNMVVRVKWFYHPEETSPGKQFHEGQHWDQKSGRSLPAALRASSQRKDFMERALYQSSHVDENDVQTVSHKCLVVGLEQYEQMLKTKKYQDSEGLYYLAGTYEPTTGMIFSTDGVPVLC", 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"MDGRDFGPQRSVHGPPPPLLSGLAMDSHRVGAATAGRLPSSGLPGPLPPGKYMAGLNLHPHPGEAFLGSFVASGMGPSASSQGSPLSLPSALSFRSPTPSNLPMVQLWATHAHEGFSHLPSGLYPSYLHLNHLEPPSNGSPLLSQLGQPSIFDTQKDGFYLPAPGTLHSHTPSSRTPGGHSSVGPAKGSSREGAGKDRSGRGGDPPPLFGKKDPRAREEVSVPRGVVDLTQEARAEGRQDRGPSRLAERLSPFLAEAKAKGTLQPSTLSLCNGVVDAGLVAELGRGGAKEVARQEESARLLRRTEALLPTARPCGSPLPPPPPLPPKGPPAPPSSTPTGVYTVFREPGREHRVVAPTFVPSVEAFDERVGPIQIASQARDARAREREPGRPGVLQGPPGSPRLERPEVLREKSSVIRSLKRPPPSDGPPARSSRSSPDTRAYLPPKELLKPEADPRPCERAPRGSSSSAAQQAAKFFGLEPSRPPGPEHKWKPFELGNFATTQMAVLAAQHHHASRAEEEATVATASKKAYLDPGSTMPRASATCGRPGADLHPAAHGPGEASAMQSLIKYSGSFAREAVAVRPGGGGKKSPFGGLGTMKPEPIPTSAGPPRAQARLTHPGVPTAGGGRQLKRDPERPESAKAFGREGSGAQGEAEVRHPPVGIAVAVARQKDSGSSSRLGPGLVDQDRSLSLNNVKGHGRTDDDCDRTRHREDRLLGTRLDRDQEKLLRESKELADLARLHPTSCAPNGLNPNLMVTGGPTLAGSGRWSADPAAHLAAHPWLPRSGSTSMWLAGHPYGLGPPSLHQGMAPAFPPGLGSSLPSTYQFVRDPQSGQLVVIPSDHLPHFAELMERAAVPPLWPALYPPGRSPLHHAQQLQLFSQQHFLRQQELLYLQQQAAQALELQRSAQLVQERLKAQEHRTEMEEKVNKKSLETTGKAGLSATGPGLLPRKPTGLASGPTGTHGKAVSPPPSPRASPVTSLKAKVIQKVEDVSKPPAYTYPATPSSHPSSPPPASPPPTPGITRKEEAPENVVEKKDLELEKEAPSPFQALFTDIPPRYPFQALPPHYGRPYPFLLQPTAAADADGLAPDVPLPADGPERLALSPEDKPICLSPSKIPEPPRDSPEEQPLVDREVKAEVEDVEEGSTELPPLESPMALPVPETMVAVSPASGCGGGLLEAQALSTAGQGCREPSEASDFAQVAEPQIELPSRTEPRVAALELGTQLTPEPLVETKEEPVEVPLDVPMEGPMTEAGPEDSLPQPSLTEPQPSLELSDCDLPVPEGQCLNLETQEAAPALGSTCYLEETCSESLLPGLEDPLAGMNALAAAAELPQARPLPSLGTGVPTGEKLDTAPSLGLEHSFLQGITLLSEIAELELDRRGQEVAGAEPNLVVRPSLESLLAASSHMLKEVLDSPFSDPLKNLRLPRELNSNKKYSWMQKKEERMFAMKSSLEDMDALELDFRMRLAEVQRRYKEKQRELVKLQRRRDSGDRHEDAHRSMARRGPGRPRKRTHTPSALSPPCKRGKSHSGSGKLSSKSLLTSDDYELGTGIRKRHKGPEEDQDALIGMGKARSRNQSWDDHESSSDFMSQLKIKKKKMASDQEQLASKLDRALSLTKQDKLKSPFKFSDSPGGKSKASGGCGRFLTPYDSLLGKDRKALAKGLGLSLKPSREGKHKRAAKARKMEGGFKARGQPKPAHSPFASEVSSHSYNTDSDEDDEDFSKNEWSAQGPSSSKLTSSFLCGMVTKNSKPGTGPKLTKRSLAGPRTLKPKAASSRKQSFCLLLREARSSFSDSSEEDSFDQDDSSEEDDEEELEEEEEEEEEEEEEEAVGSYRLGAGEQALSPSLEESGLGLLARFAASALPSPVVGPPLSVVQLEAEQKARKKEERQSLMGTEFEYTDSDSEVKVPKQSPAGLLRPKKGVGEPGQSMAAPVPGTRASGPTSPDKTKLASEKGRKPRKIRGPKEPGFEAGPEASDDDLWTRRRSERIFLHDASAAVQAPSNTAPAPKPTRCGKGGAPSPRKDTGRAKDRKDPRKKKKGKEAGSAATLPPARVSALPDSRAPHTGPLATARRSKAKAKGKEVKKENRGKGGAVSKLMECMAAEEDFEPNQDSSFSEDEHLPGGGATERPLTPAPRSCIIDKDELKDGLRVLIPMDDKLLYAGHVHTVHSPDIYRVVVEGERGNRPHIYCLEQLLQEAIIDVRPASTRFLPQGTRIAAYWSQQYRCLYPGTVVRGLLDLEDDGDLITVEFDDGDTGRIPLSHIRLLPPDYKIQCAEPSPALLVPSAKRRSRKTSKDTGEGKEGATTGTQEATGAKARGRGRKPSAKAKGDRAAVLEEGATTDEVPSAPLALEPINTPSSKKSPPEPVDKRARAPKARSVSAQPSPMPPTFSSCPAPEPFGELPAPPAAPLINMPVTMPATRPKPKKARAAEGSGAKGPRRPGEEDELLVKLDHEGVMSPKSKKAKEALLLREDPGPGAWPESTGLLSLGSYPPAVGNSEPKATWPKALDGDLTQEPGPGLPLEDPGNSKNPDKAQAEQDGAEESETTTSSSSSSSTSSSSSSSSSSSSSSSSSSSSGSETEGEEDTEKSREDGRGAGGRTCSAASSRASSPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDDEAAPAPAAGPSTQQPALPTKVSKPPSKARSSAHSPGKKAPTATQPPPSPHQPPQPQQTLQPKTQAGAGAKSRPKKREGVHLPTTKELAKRQRLPSVENRPKIAAFLPARQLWKWFGKPTQRRGMKGKARKLFYKAIVRGKEMIRIGDCAVFLSAGRPNLPYIGRIQSMWESWGNNMVVRVKWFYHPEETSPGKQFHEGQHWDQKSGRSLPAALRASSQRKDFMERALYQSSHVDENDVQTVSHKCLVVGLEQYEQMLKTKKYQDSEGLYYLAGTYEPTTGMIFSTDGVPVLC", "length": 2958, "header": "tr|A0A9J7JLI7-1|A0A9J7JLI7_CRIGR Isoform 1 of Trinucleotide repeat-containing gene 18 protein OS=Cricetulus griseus OX=10029 GN=Tnrc18 PE=4 SV=1 CANONICAL=A0A9J7JLI7-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1004, "start_aa": "Thr", "end_pos": 1004, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1004", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1020, "start_aa": "Thr", "end_pos": 1020, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1020", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1944, "start_aa": "Thr", "end_pos": 1944, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1944", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 961, "start_aa": "Thr", "end_pos": 961, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr961", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JLI7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLI7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JLI7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLI7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100768203", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768203", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JLI7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLI7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 138, "end_pos": 140, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1577, "end_pos": 1579, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JLI7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLI7" }, { "id": "PS51038", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51038" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BAH", "eco_id": "ECO_0000259", "start_pos": 2807, "end_pos": 2952, "start_aa": "Glu", "end_aa": "Asp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 961, 1004, 1020, 1944 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 138, "end_pos": 140 }, { "start_pos": 1577, "end_pos": 1579 } ] }, 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0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 4 }, { "field": "exact_o_linked_sites", "count": 4 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JLM3-1", "uniprot_ac": "A0A9J7JLM3", "uniprot_id": "A0A9J7JLM3_CRIGR", "mass": { "chemical_mass": 48909.0, "monoisotopic_mass": 48909.0 }, "refseq": { "ac": "XP_027266683", "name": "upstream-binding factor 1-like protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266683" }, "gene_names": [ { "name": "LOC113835158", "type": "recommended", "evidence": [ { "id": "A0A9J7JLM3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLM3" } ] }, { "name": "LOC113835158", "type": "synonym", "evidence": [ { "id": "XP_027266683", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266683" } ] } ], "protein_names": [ { "name": "Upstream-binding factor 1-like protein 1", "type": "synonym", "evidence": [ { "id": "A0A9J7JLM3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLM3/entry#names_and_taxonomy" } ] }, { "name": "upstream-binding factor 1-like protein 1", "type": "synonym", "evidence": [ { "id": "XP_027266683", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266683" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 26% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. 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"database": "UniProtKB", "id": "A0A9J7JLM3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLM3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 170, "end_pos": 172, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JLM3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLM3" }, { "id": "PS50118", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50118" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "HMG box", "eco_id": "ECO_0000259", "start_pos": 100, "end_pos": 168, "start_aa": "Pro", "end_aa": "Arg", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 170, "end_pos": 172 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { 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"total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JLS8-1", "uniprot_ac": "A0A9J7JLS8", "uniprot_id": "A0A9J7JLS8_CRIGR", "mass": { "chemical_mass": 80995.0, "monoisotopic_mass": 80995.0 }, "refseq": { "ac": "XP_003505382", "name": "NUT family member 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003505382" }, "gene_names": [ { "name": "LOC100754022", "type": "recommended", "evidence": [ { "id": "A0A9J7JLS8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLS8" } ] }, { "name": "LOC100754022", "type": "synonym", "evidence": [ { "id": "XP_003505382", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003505382" } ] } ], "protein_names": [ { 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This record is derived from a genomic sequence (NW_003614143.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003505382", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003505382" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JLS8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLS8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100754022", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLS8", "locus": {} } ], "crossref": [ { "id": "A0A9J7JLS8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JLS8", "database": "AlphaFoldDB", "categories": [] }, { "id": "100754022", "url": "https://www.ncbi.nlm.nih.gov/gene/100754022", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR024309", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024309", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024310", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024310", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100754022", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754022", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JLS8", "url": "https://www.orthodb.org/?gene=A0A9J7JLS8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22879", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22879", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22879:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22879:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12881", "url": 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"MDPSRHAWLLSNPVGITSEASSLGKNMTANPSASMSTFATLPVLPPAPQPTPQLFWEPPAPLMTASISPRNPLVLSTLPGMSLVAEDGSTTLGTAVPLNLVQVGTPGRPVQPMPNANIVLTQVPLNCNVPVTQGGGMGRPASLFMTTPAANTFINAQIASTVQPQEGLWVLGSHPPTTQPVVQLVPVRSPVNSAPPPKGAVGESGPANVKTSSPENYLSKPDSVYGNFRRWQHIKTLVQRHLPQTPDASAFSCFLIPVLRSLARRKPTMNVEEGLWRGLQEWQCTSNYDRMIFFEMAEKFTEFESAEEMENSRLETENSRLEVMRSVQGQTLTTTRQDPPSSPAPEVLEEPVCNSMKTGPKTDPAGLPVLRHRQLQNTEAPMEIPPEAVQEYMDIMDWLERLPQSFTGEPTEKEEEENSGPEQERDDLYSDAGVLSYIDELCSQKHFVEQVEAIINPQFVAEILSSKPEMDILSLMKVLEYEEELSVEQLLEEHCLTLKKKGCKSAPLNPGAPQILSNASLPTVCQGAKRDDHGPQRGASAQKGSSQVPSLDQQCPGATTAEIWGPRPTVFPGSQCLPSLGDIGSTVIPSGRGTHPQSPGSRCATSLRGVSAMEELQESLGRTIEDKEELPSLSFLLWSQYRLVPWKLSGYLCPYTGLSDSASIPKPLSPKIRDLSPDPSSTDKSKKRALIGGLTPMAKRSNSGLGHGMFEGSLSALGLTHPLQAQKKKFESLGTRKRKRKKRH", "length": 744, "header": "tr|A0A9J7JLS8-1|A0A9J7JLS8_CRIGR Isoform 1 of NUT family member 2 OS=Cricetulus griseus OX=10029 GN=LOC100754022 PE=3 SV=1 CANONICAL=A0A9J7JLS8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JLS8-1", "url": 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:: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027267131", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267131" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JMQ8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMQ8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Pdcd7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMQ8", "locus": {} } ], "crossref": [ { "id": "A0A9J7JMQ8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JMQ8", "database": "AlphaFoldDB", "categories": [] }, { "id": "100753946", "url": "https://www.ncbi.nlm.nih.gov/gene/100753946", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031974", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031974", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052831", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052831", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100753946", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753946", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JMQ8", "url": "https://www.orthodb.org/?gene=A0A9J7JMQ8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48190", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48190", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48190:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48190:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF16021", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16021", 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"MALPPFFAPGRQGPPPPQPPPSAPFGCPPPPLPSPAFPPPLPQRPGPFPGAAAPFLQPPLALQPPPRPRPPRRRGGGGGGSSGSFFPVPPPPLPPPPPQCRPFPGPDAGERPRPPPPGPGPPWSPRWAEAPPPPDVLGDAALQRLRDRQWLEAVFGNPRRPGGPGPGPPRTPVGPSLGEVRARLRAALRLVRRLRSLGQSLREAETDGAAWASLHAQAEPLRAELAERLQPLAQAAYVGEARRRLKRVRRRRLRLRERAREREAEREAEAAQATEREQEIDRWRVKCVQEVEEKKREQELKAAADGVLSEVRKKQSDTKRMVDILRALEKLRKLRKEAAARKGVCPPASADETFEHHLQRLRKLIKKRSELYEAEERALRVMLEGEQEEERKRELEKKQRKEKEKLLLQKREIESKLFGDPEEFPLAHLLQPFRQYYLQAEHSLPALIQIRHDWDQYLVPSDHPKGNSVPQGWVLPPIPSNDIWATAVKLH", "length": 491, "header": "tr|A0A9J7JMQ8-1|A0A9J7JMQ8_CRIGR Isoform 1 of Programmed cell death protein 7 isoform X2 OS=Cricetulus griseus OX=10029 GN=Pdcd7 PE=4 SV=1 CANONICAL=A0A9J7JMQ8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JLX9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLX9/entry", "sequence": { "sequence": 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"MALPPFFAPGRQGPPPPQPPPSAPFGCPPPPLPSPAFPPPLPQRPGPFPGAAAPFLQPPLALQPPPRPRPPRRRGGGGGGSSGSFFPVPPPPLPPPPPQCRPFPGPDAGERPRPPPPGPGPPWSPRWAEAPPPPDVLGDAALQRLRDRQWLEAVFGNPRRPGGPGPGPPRTPVGPSLGEVRARLRAALRLVRRLRSLGQSLREAETDGAAWASLHAQAEPLRAELAERLQPLAQAAYVGEARRRLKRVRRRRLRLRERAREREAEREAEAAQATEREQEIDRWRVKCVQEVEEKKREQELKAAADGVLSEVRKKQSDTKRMVDILRALEKLRKLRKEAAARKGVCPPASADETFEHHLQRLRKLIKKRSELYEAEERALRVMLEGEQEEERKRELEKKQRKEKEKLLLQKREIESKLFGDPEEFPLAHLLQPFRQYYLQAEHSLPALIQIRHDWDQYLVPSDHPKGNSVPQGWVLPPIPSNDIWATAVKLH", "length": 491, "header": "tr|A0A9J7JMQ8-1|A0A9J7JMQ8_CRIGR Isoform 1 of Programmed cell death protein 7 isoform X2 OS=Cricetulus griseus OX=10029 GN=Pdcd7 PE=4 SV=1 CANONICAL=A0A9J7JMQ8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JLY6-1", "uniprot_ac": "A0A9J7JLY6", "uniprot_id": "A0A9J7JLY6_CRIGR", "mass": { "chemical_mass": 31162.0, "monoisotopic_mass": 31162.0 }, "refseq": { "ac": "XP_007646173", "name": "LOW QUALITY PROTEIN: phospholipid scramblase 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007646173" }, "gene_names": [ { "name": "LOC100763512", "type": "recommended", "evidence": [ { "id": "A0A9J7JLY6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLY6" } ] }, { "name": "LOC100763512", "type": "synonym", "evidence": [ { "id": "XP_007646173", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007646173" } ] } ], "protein_names": [ { "name": "Phospholipid scramblase", "type": "recommended", "evidence": [ { "id": "A0A9J7JLY6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLY6/entry#names_and_taxonomy" } ] }, { "name": "LOW QUALITY PROTEIN: phospholipid scramblase 2", "type": "synonym", "evidence": [ { "id": "XP_007646173", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007646173" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 15% of CDS bases frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614375.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007646173", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007646173" } ] }, { "annotation": "May mediate accelerated ATP-independent bidirectional transbilayer migration of phospholipids upon binding calcium ions that results in a loss of phospholipid asymmetry in the plasma membrane.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JLY6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLY6#function" }, { "database": "UniProtKB", "id": "RU363116", "url": "https://www.uniprot.org/uniprotkb/RU363116#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JLY6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLY6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100763512", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLY6", "locus": {} } ], "crossref": [ { "id": "100763512", "url": "https://www.ncbi.nlm.nih.gov/gene/100763512", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005552", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005552", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763512", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763512", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JLY6", "url": "https://www.orthodb.org/?gene=A0A9J7JLY6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23248", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23248", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23248:SF32", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23248:SF32", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03803", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03803", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007646173", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007646173", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JLY6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLY6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JLY6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLY6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSDRKLAAPVEQTKTQSQSYVLGFHSCYPQSQQLCVPAVTPWIPASPXLELPPGLRYLLQLDRILIHQDFEFAEAILGFETANKYNITSKLGQKIYHAVEESNFCMRLCCGDYRPFTMRILDNLGHEVIILKRPLRCSSCFCPCCLQKIEVQIPPGVPIGYISQTWHPCVPKFTVQNERKQDVLKIIGPCITCSCVGNVDFQIKSLDEKIVIGRISKHWSGFLKEVLTDVDSFGIYFPMDLDVKMKAVMLGACFLIDFMFFETGRGQRPKLRLC", "length": 274, "header": "tr|A0A9J7JLY6-1|A0A9J7JLY6_CRIGR Isoform 1 of Phospholipid scramblase OS=Cricetulus griseus OX=10029 GN=LOC100763512 PE=3 SV=1 CANONICAL=A0A9J7JLY6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JLY6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLY6/entry", "sequence": { "sequence": "MSDRKLAAPVEQTKTQSQSYVLGFHSCYPQSQQLCVPAVTPWIPASPXLELPPGLRYLLQLDRILIHQDFEFAEAILGFETANKYNITSKLGQKIYHAVEESNFCMRLCCGDYRPFTMRILDNLGHEVIILKRPLRCSSCFCPCCLQKIEVQIPPGVPIGYISQTWHPCVPKFTVQNERKQDVLKIIGPCITCSCVGNVDFQIKSLDEKIVIGRISKHWSGFLKEVLTDVDSFGIYFPMDLDVKMKAVMLGACFLIDFMFFETGRGQRPKLRLC", "length": 274, "header": "tr|A0A9J7JLY6-1|A0A9J7JLY6_CRIGR Isoform 1 of Phospholipid scramblase OS=Cricetulus griseus OX=10029 GN=LOC100763512 PE=3 SV=1 CANONICAL=A0A9J7JLY6-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 40, "start_aa": "Thr", "end_pos": 40, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr40", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"length": 1701, "header": "tr|A0A9J7JM77-1|A0A9J7JM77_CRIGR Isoform 1 of 182 kDa tankyrase-1-binding protein OS=Cricetulus griseus OX=10029 GN=Tnks1bp1 PE=4 SV=1 CANONICAL=A0A9J7JM77-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 325, "start_aa": "Thr", "end_pos": 325, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr325", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 616, "start_aa": "Thr", "end_pos": 616, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr616", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JM77", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JM77" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JM77", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JM77" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100759238", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759238", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JM77", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JM77" } ], "pmid": "" }, { "name": "heterochromatin", "id": "GO:0000792", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000792", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JM77", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JM77" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "double-strand break repair", "id": "GO:0006302", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006302", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JM77", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JM77" } ], "pmid": "" }, { "name": "cellular response to ionizing radiation", "id": "GO:0071479", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071479", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JM77", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JM77" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1200, "end_pos": 1202, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1636, "end_pos": 1638, "annotation": "n_glycosylation_sequon" }, { "start_pos": 284, "end_pos": 286, "annotation": "n_glycosylation_sequon" }, { "start_pos": 354, "end_pos": 356, "annotation": 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"cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 325, 616 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1200, "end_pos": 1202 }, { "start_pos": 1636, "end_pos": 1638 }, { "start_pos": 284, "end_pos": 286 }, { "start_pos": 354, "end_pos": 356 }, { "start_pos": 458, "end_pos": 460 }, { "start_pos": 746, "end_pos": 748 }, { "start_pos": 864, "end_pos": 866 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { 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"count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JM85-1", "uniprot_ac": "A0A9J7JM85", "uniprot_id": "A0A9J7JM85_CRIGR", "mass": { "chemical_mass": 86822.0, "monoisotopic_mass": 86822.0 }, "refseq": { "ac": "XP_003504283", "name": "solute carrier family 26 member 6 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003504283" }, "gene_names": [ { "name": "Slc26a6", "type": "recommended", "evidence": [ { "id": "A0A9J7JM85", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JM85" } ] }, { "name": "Slc26a6", "type": "synonym", "evidence": [ { "id": "XP_003504283", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003504283" } ] } ], "protein_names": [ { "name": "Solute carrier family 26 member 6 isoform X4", "type": "synonym", "evidence": [ { "id": "A0A9J7JM85", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JM85/entry#names_and_taxonomy" } ] }, { "name": "solute carrier family 26 member 6 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003504283", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003504283" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614047.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003504283", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003504283" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JM85", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JM85" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Slc26a6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JM85", "locus": {} } ], "crossref": [ { "id": "A0A9J7JM85", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JM85", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd07042", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07042", "database": "CDD", "categories": [ "Protein Classification" ] 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Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027278885.1. 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984, "header": "tr|A0A9J7JW48-1|A0A9J7JW48_CRIGR Computationally mapped isoform of Transcription termination factor 1 isoform X4 OS=Cricetulus griseus OX=10029 GN=Ttf1 PE=4 SV=1 CANONICAL=A0A9J7JMF7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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[ { "database": "UniProtKB", "id": "A0A9J7JMF7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMF7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "termination of RNA polymerase I transcription", "id": "GO:0006363", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006363", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JMF7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMF7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 944, "end_pos": 946, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JMF7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMF7" }, { "id": "PS50090", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50090" } ], "ann_type": 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"Protein Classification" ] }, { "id": "A0A9J7JPD0", "url": "https://www.orthodb.org/?gene=A0A9J7JPD0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JQF0", "url": "https://www.orthodb.org/?gene=A0A9J7JQF0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31434", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31434", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31434:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31434:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12874", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12874", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16501", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16501", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007617621", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007617621", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MW68", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MW68", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MW68-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MW68-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GYQ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GYQ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GYQ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GYQ5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JMI6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMI6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JMI6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMI6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JPD0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPD0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JPD0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPD0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JQF0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQF0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JQF0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQF0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMASFQRSNSHDKVRRIVAEEGRTARNLIAWSVPLESKDEDGKHKCQTGGKSKRTIQSTHKISKQSTAVDCKITSTSGEKHFDKSPTKARHPRKIDLRARYWAFLFDNLRRAVDEIYVTCESDQSVVECKEVLMMLDYYVRDFKALIDWIQLQEKLEKTDAQSRPTSLAWEVKKMSPGRHVIPSPSTDRMNVTSTARRSLNFGSLPGTVTAPCLAPTGVSWADKVKAHHTGSATSDVTPAQPCAPTTVQKNSRKNERKDAEGWETVQRGRPVRPRSTVVMPKVSLVTETLRSKDDSDKENVCLLPGERTQKGDLVDNRPSVAESLSKDSFHPSDHPLAERTQFTVSILDDVKNSGGSQDSSVHTSEIPAVHSDAVCLAVTQQATSALPTDKDRVLAEKAGIVNETDPSDISNVSAADLSMAEVLAKKEELADRLEKANEEAIASAIAEEEQLTREIEAEENNDINIETDNDSDFSASMGSGSLSFCGMSMDWSDVLADYEARESWRQNTSWGDIVEEEPARLPGHGIHMHEKLSSPSRKRTIAESKKKYEEKHMKAQQLREKLREEKTLKLQKLLEREKDVRKWKEELLDQRRRMMEEKLLHAEFKREVQLQAIVKKAQEEEAKVNEIAFINTLEAQNKRHDVLSKLKEYEQRLNELQEERQRRQEEKQARDEAVQERKRALEAERQARVEELLMKRKEQEARIEQQRQEKEKAREDAARERARDREERLAALTAAQQEAMEELQKKIQLKHDESIRRHMEQIEQRKEKAAELSSGRHASTDYAPKLTPYERKKQCSLCNVLIASEVYLFSHIKGKKHQQAVRENSSIQGRELSDEEVEHLSLKKYVVDIVIESAAPPEPVKDGEERQKNKKKAKKIKARMNSRAKEYESLVETKNSGSDSPYKAKLQRLAKDLVKQFQVQDSGSWANNKASALDRTLGEVARILEKENIADQIAFQVAGGLTALEHILQVVAPASNMNTVSRIPPKSLCNAINVYNLTCNNCSENCTDVLFSNKITFLMDLLIHQLTVYVPDENNAVLGRNTNKQVFEGLTTGLLRAGAVVFSCLIANRPDGNSRPATPKIPTQEMKNKPSQGDAFNSRVQDLISYVVNMGLIDRLHGCFLSVQGPVDENPKMATFLQHAAGFLRGMCSLCFAVTGRSYSIFDNNHQDPTGLTAALQATDLAGVLHMLYCILFHGTISDPSTTSPKESYTQNTIQVAIQSLRFFNSFAVLDLPAFQSIVGAEGLSLAFRHIASSLLGHCSQVSCESLLHEVIVCVGYFTVNHPDNQVIVQSGRHPTVLQKLCQLPFQYFSDPRLIKVLFPSLIAASYNNLQNKIILEQEMSCVLLATFIQDFAQTPGHVDNQSAYPKGKRGNLGDYLELANRFPQQAWDEARQFFLKKEKK", "length": 1402, "header": "tr|A0A9J7JMI6-1|A0A9J7JMI6_CRIGR Isoform 1 of S phase cyclin A-associated protein in the endoplasmic reticulum isoform X1 OS=Cricetulus griseus OX=10029 GN=Scaper PE=4 SV=1 CANONICAL=A0A9J7JMI6-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MW68-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MW68/entry", "sequence": { "sequence": "MMASFQRSNSHDKVRRIVAEEGRTARNLIAWSVPLESKDEDGKHKCQTGGKSKRTIQSTHKISKQSTAVDCKITSTSGEKHFDKSPTKARHPRKIDLRARYWAFLFDNLRRAVDEIYVTCESDQSVVECKEVLMMLDYYVRDFKALIDWIQLQEKLEKTDAQSRPTSLAWEVKKMSPGRHVIPSPSTDRMNVTSTARRSLNFGSLPGTVTAPCLAPTGVSWADKVKAHHTGSATSDVTPAQPCAPTTVQKNSRKNERKDAEGWETVQRGRPVRPRSTVVMPKVSLVTETLRSKDDSDKENVCLLPGERTQKGDLVDNRPSVAESLSKDSFHPSDHPLAERTQFTVSILDDVKNSGGSQDSSVHTSEIPAVHSDAVCLAVTQQATSALPTDKDRVLAEKAGIVNETDPSDISNSMAEVLAKKEELADRLEKANEEAIASAIAEEEQLTREIEAEENNDINIETDNDSDFSASMGSGSLSFCGMSMDWSDVLADYEARESWRQNTSWGDIVEEEPARLPGHGIHMHEKLSSPSRKRTIAESKKKYEEKHMKAQQLREKLREEKTLKLQKLLEREKDVRKWKEELLDQRRRMMEEKLLHAEFKREVQLQAIVKKAQEEEAKVNEIAFINTLEAQNKRHDVLSKLKEYEQRLNELQEERQRRQEEKQARDEAVQERKRALEAERQARVEELLMKRKEQEARIEQQRQEKEKAREDAARERARDREERLAALTAAQQEAMEELQKKIQLKHDESIRRHMEQIEQRKEKAAELSSGRHASTDYAPKLTPYERKKQCSLCNVLIASEVYLFSHIKGKKHQQAVRENSSIQGRELSDEEVEHLSLKKYVVDIVIESAAPPEPVKDGEERQKNKKKAKKIKARMNSRAKEYESLVETKNSGSDSPYKAKLQRLAKDLVKQFQVQDSGSWANNKASALDRTLGEVARILEKENIADQIAFQVAGGLTALEHILQVVAPASNMNTVSRIPPKSLCNAINVYNLTCNNCSENCTDVLFSNKITFLMDLLIHQLTVYVPDENNAVLGRNTNKQVFEGLTTGLLRAGAVVFSCLIANRPDGNSRPATPKIPTQEMKNKPSQGDAFNSRVQDLISYVVNMGLIDRLHGCFLSVQGPVDENPKMATFLQHAAGFLRGMCSLCFAVTGRSYSIFDNNHQDPTGLTAALQATDLAGVLHMLYCILFHGTISDPSTTSPKESYTQNTIQVAIQSLRFFNSFAVLDLPAFQSIVGAEGLSLAFRHIASSLLGHCSQVSCESLLHEVIVCVGYFTVNHPDNQVIVQSGRHPTVLQKLCQLPFQYFSDPRLIKVLFPSLIAASYNNLQNKIILEQEMSCVLLATFIQDFAQTPGHVDNQSAYPKGKRGNLGDYLELANRFPQQAWDEARQFFLKKEKK", "length": 1396, "header": "tr|A0A8C2MW68-1|A0A8C2MW68_CRIGR Computationally mapped isoform of S phase cyclin A-associated protein in the endoplasmic reticulum isoform X2 OS=Cricetulus griseus OX=10029 GN=Scaper PE=4 SV=1 CANONICAL=A0A9J7JMI6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GYQ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GYQ5/entry", "sequence": { "sequence": "MMSTAVDCKITSTSGEKHFDKSPTKARHPRKIDLRARYWAFLFDNLRRAVDEIYVTCESDQSVVECKEVLMMLDYYVRDFKALIDWIQLQEKLEKTDAQSRPTSLAWEVKKMSPGRHVIPSPSTDRMNVTSTARRSLNFGSLPGTVTAPCLAPTGVSWADKVKAHHTGSATSDVTPAQPCAPTTVQKNSRKNERKDAEGWETVQRGRPVRPRSTVVMPKVSLVTETLRSKDDSDKENVCLLPGERTQKGDLVDNRPSVAESLSKDSFHPSDHPLAERTQFTVSILDDVKNSGGSQDSSVHTSEIPAVHSDAVCLAVTQQATSALPTDKDRVLAEKAGIVNETDPSDISNVSAADLSMAEVLAKKEELADRLEKANEEAIASAIAEEEQLTREIEAEENNDINIETDNDSDFSASMGSGSLSFCGMSMDWSDVLADYEARESWRQNTSWGDIVEEEPARLPGHGIHMHEKLSSPSRKRTIAESKKKYEEKHMKAQQLREKLREEKTLKLQKLLEREKDVRKWKEELLDQRRRMMEEKLLHAEFKREVQLQAIVKKAQEEEAKVNEIAFINTLEAQNKRHDVLSKLKEYEQRLNELQEERQRRQEEKQARDEAVQERKRALEAERQARVEELLMKRKEQEARIEQQRQEKEKAREDAARERARDREERLAALTAAQQEAMEELQKKIQLKHDESIRRHMEQIEQRKEKAAELSSGRHASTDYAPKLTPYERKKQCSLCNVLIASEVYLFSHIKGKKHQQAVRENSSIQGRELSDEEVEHLSLKKYVVDIVIESAAPPEPVKDGEERQKNKKKAKKIKARMNSRAKEYESLVETKNSGSDSPYKAKLQRLAKDLVKQFQVQDSGSWANNKASALDRTLGEVARILEKENIADQIAFQVAGGLTALEHILQVVAPASNMNTVSRIPPKSLCNAINVYNLTCNNCSENCTDVLFSNKITFLMDLLIHQLTVYVPDENNAVLGRNTNKQVFEGLTTGLLRAGAVVFSCLIANRPDGNSRPATPKIPTQEMKNKPSQGDAFNSRVQDLISYVVNMGLIDRLHGCFLSVQGPVDENPKMATFLQHAAGFLRGMCSLCFAVTGRSYSIFDNNHQDPTGLTAALQATDLAGVLHMLYCILFHGTISDPSTTSPKESYTQNTIQVAIQSLRFFNSFAVLDLPAFQSIVGAEGLSLAFRHIASSLLGHCSQVSCESLLHEVIVCVGYFTVNHPDNQVIVQSGRHPTVLQKLCQLPFQYFSDPRLIKVLFPSLIAASYNNLQNKIILEQEMSCVLLATFIQDFAQTPGHVDNQSAYPKGKRGNLGDYLELANRFPQQAWDEARQFFLKKEKK", "length": 1339, "header": "tr|A0A9J7GYQ5-1|A0A9J7GYQ5_CRIGR Computationally mapped isoform of S phase cyclin A-associated protein in the endoplasmic reticulum isoform X5 OS=Cricetulus griseus OX=10029 GN=Scaper PE=4 SV=1 CANONICAL=A0A9J7JMI6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JMI6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMI6/entry", "sequence": { "sequence": "MMASFQRSNSHDKVRRIVAEEGRTARNLIAWSVPLESKDEDGKHKCQTGGKSKRTIQSTHKISKQSTAVDCKITSTSGEKHFDKSPTKARHPRKIDLRARYWAFLFDNLRRAVDEIYVTCESDQSVVECKEVLMMLDYYVRDFKALIDWIQLQEKLEKTDAQSRPTSLAWEVKKMSPGRHVIPSPSTDRMNVTSTARRSLNFGSLPGTVTAPCLAPTGVSWADKVKAHHTGSATSDVTPAQPCAPTTVQKNSRKNERKDAEGWETVQRGRPVRPRSTVVMPKVSLVTETLRSKDDSDKENVCLLPGERTQKGDLVDNRPSVAESLSKDSFHPSDHPLAERTQFTVSILDDVKNSGGSQDSSVHTSEIPAVHSDAVCLAVTQQATSALPTDKDRVLAEKAGIVNETDPSDISNVSAADLSMAEVLAKKEELADRLEKANEEAIASAIAEEEQLTREIEAEENNDINIETDNDSDFSASMGSGSLSFCGMSMDWSDVLADYEARESWRQNTSWGDIVEEEPARLPGHGIHMHEKLSSPSRKRTIAESKKKYEEKHMKAQQLREKLREEKTLKLQKLLEREKDVRKWKEELLDQRRRMMEEKLLHAEFKREVQLQAIVKKAQEEEAKVNEIAFINTLEAQNKRHDVLSKLKEYEQRLNELQEERQRRQEEKQARDEAVQERKRALEAERQARVEELLMKRKEQEARIEQQRQEKEKAREDAARERARDREERLAALTAAQQEAMEELQKKIQLKHDESIRRHMEQIEQRKEKAAELSSGRHASTDYAPKLTPYERKKQCSLCNVLIASEVYLFSHIKGKKHQQAVRENSSIQGRELSDEEVEHLSLKKYVVDIVIESAAPPEPVKDGEERQKNKKKAKKIKARMNSRAKEYESLVETKNSGSDSPYKAKLQRLAKDLVKQFQVQDSGSWANNKASALDRTLGEVARILEKENIADQIAFQVAGGLTALEHILQVVAPASNMNTVSRIPPKSLCNAINVYNLTCNNCSENCTDVLFSNKITFLMDLLIHQLTVYVPDENNAVLGRNTNKQVFEGLTTGLLRAGAVVFSCLIANRPDGNSRPATPKIPTQEMKNKPSQGDAFNSRVQDLISYVVNMGLIDRLHGCFLSVQGPVDENPKMATFLQHAAGFLRGMCSLCFAVTGRSYSIFDNNHQDPTGLTAALQATDLAGVLHMLYCILFHGTISDPSTTSPKESYTQNTIQVAIQSLRFFNSFAVLDLPAFQSIVGAEGLSLAFRHIASSLLGHCSQVSCESLLHEVIVCVGYFTVNHPDNQVIVQSGRHPTVLQKLCQLPFQYFSDPRLIKVLFPSLIAASYNNLQNKIILEQEMSCVLLATFIQDFAQTPGHVDNQSAYPKGKRGNLGDYLELANRFPQQAWDEARQFFLKKEKK", "length": 1402, "header": "tr|A0A9J7JMI6-1|A0A9J7JMI6_CRIGR Isoform 1 of S phase cyclin A-associated protein in the endoplasmic reticulum isoform X1 OS=Cricetulus griseus OX=10029 GN=Scaper PE=4 SV=1 CANONICAL=A0A9J7JMI6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JPD0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPD0/entry", "sequence": { "sequence": "MRMSTAVDCKITSTSGEKHFDKSPTKARHPRKIDLRARYWAFLFDNLRRAVDEIYVTCESDQSVVECKEVLMMLDYYVRDFKALIDWIQLQEKLEKTDAQSRPTSLAWEVKKMSPGRHVIPSPSTDRMNVTSTARRSLNFGSLPGTVTAPCLAPTGVSWADKVKAHHTGSATSDVTPAQPCAPTTVQKNSRKNERKDAEGWETVQRGRPVRPRSTVVMPKVSLVTETLRSKDDSDKENVCLLPGERTQKGDLVDNRPSVAESLSKDSFHPSDHPLAERTQFTVSILDDVKNSGGSQDSSVHTSEIPAVHSDAVCLAVTQQATSALPTDKDRVLAEKAGIVNETDPSDISNVSAADLSMAEVLAKKEELADRLEKANEEAIASAIAEEEQLTREIEAEENNDINIETDNDSDFSASMGSGSLSFCGMSMDWSDVLADYEARESWRQNTSWGDIVEEEPARLPGHGIHMHEKLSSPSRKRTIAESKKKYEEKHMKAQQLREKLREEKTLKLQKLLEREKDVRKWKEELLDQRRRMMEEKLLHAEFKREVQLQAIVKKAQEEEAKVNEIAFINTLEAQNKRHDVLSKLKEYEQRLNELQEERQRRQEEKQARDEAVQERKRALEAERQARVEELLMKRKEQEARIEQQRQEKEKAREDAARERARDREERLAALTAAQQEAMEELQKKIQLKHDESIRRHMEQIEQRKEKAAELSSGRHASTDYAPKLTPYERKKQCSLCNVLIASEVYLFSHIKGKKHQQAVRENSSIQGRELSDEEVEHLSLKKYVVDIVIESAAPPEPVKDGEERQKNKKKAKKIKARMNSRAKEYESLVETKNSGSDSPYKAKLQRLAKDLVKQFQVQDSGSWANNKASALDRTLGEVARILEKENIADQIAFQVAGGLTALEHILQVVAPASNMNTVSRIPPKSLCNAINVYNLTCNNCSENCTDVLFSNKITFLMDLLIHQLTVYVPDENNAVLGRNTNKQVFEGLTTGLLRAGAVVFSCLIANRPDGNSRPATPKIPTQEMKNKPSQGDAFNSRVQDLISYVVNMGLIDRLHGCFLSVQGPVDENPKMATFLQHAAGFLRGMCSLCFAVTGRSYSIFDNNHQDPTGLTAALQATDLAGVLHMLYCILFHGTISDPSTTSPKESYTQNTIQVAIQSLRFFNSFAVLDLPAFQSIVGAEGLSLAFRHIASSLLGHCSQVSCESLLHEVIVCVGYFTVNHPDNQVIVQSGRHPTVLQKLCQLPFQYFSDPRLIKVLFPSLIAASYNNLQNKIILEQEMSCVLLATFIQDFAQTPGHVDNQSAYPKGKRGNLGDYLELANRFPQQAWDEARQFFLKKEKK", "length": 1340, "header": "tr|A0A9J7JPD0-1|A0A9J7JPD0_CRIGR Computationally mapped isoform of S phase cyclin A-associated protein in the endoplasmic reticulum isoform X4 OS=Cricetulus griseus OX=10029 GN=Scaper PE=4 SV=1 CANONICAL=A0A9J7JMI6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JQF0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQF0/entry", "sequence": { "sequence": "MMASFQRSNSHDKVRRIVAEEGRTARNLIAWSVPLESKDEDGKHKCQTGGKSKRTIQSTHKISKQSTAVDCKITSTSGEKHFDKSPTKARHPRKIDLRARYWAFLFDNLRRAVDEIYVTCESDQSVVECKEVLMMLDYYVRDFKALIDWIQLQEKLEKTDAQSRPTSLAWEVKKMSPGRHVIPSPSTDRMNVTSTARRSLNFGSLPGTVTAPCLAPTGVSWADKVKAHHTGSATSDVTPAQPCAPTTVQKNSRKNERKDAEGWETVQRGRPVRPRSTVVMPKVSLVTETLRSKDDSDKENVCLLPGERTQKGDLVDNRPSVAESLSKDSFHPSDHPLAERTQFTVSILDDVKNSGGSQDSSVHTSEIPAVHSDAVCLAVTQQATSALPTDKDRVLAEKAGIVNETDPSDISNVSAADLSMAEVLAKKEELADRLEKANEEAIASAIAEEEQLTREIEAEENNDINIETDNDSDFSASMGSGSLSFCGMSMDWSDVLADYEARESWRQNTSWGDIVEEEPARLPGHGIHMHEKLSSPSRKRTIAESKKKYEEKHMKAQQLREKLREEKTLKLQKLLEREKDVRKWKEELLDQRRRMMEEKLLHAEFKREVQLQAIVKKAQEEEAKVNEIAFINTLEAQNKRHDVLSKLKEYEQRLNELQEERQRRQEEKQARDEAVQERKRALEAERQARVEELLMKRKEQEARIEQQRQEKEKAREDAARERARDREERLAALTAAQQEAMEELQKKIQLKHDESIRRHMEQIEQRKEKAAELSSGRHASTDYAPKLTPYERKKQCSLCNVLIASEVYLFSHIKGKKHQQAVRENSSIQGRELSDEEVEHLSLKKYVVDIVIESAAPPEPVKDGEERQKNKKKAKKIKARMNSRAKEYESLVETKNSGSDSPYKAKLQRLAKDLVKQFQVQDSGSWANNKASALDRTLGEVARILEKENIADQIAFQVAGGLTALEHILQVVAPASNMNTVSRIPPKSLCNAINVYNLTCNNCSENCTDVLFSNKITFLMDLLIHQLTVYVPDENNAVLGRNTNKQVFEGLTTGLLRAGAVVFSCLIANRPDGNSRPATPKIPTQEMKNKPSQGDAFNSRVQDLISYVVNMGLIDRLHGCFLSVQGPVDENPKMATFLQHAAGFLRGMCSLCFAVTGRSYSIFDNNHQDPTGLTAALQATDLAGVLHMLYCILFHGTISDPSTTSPKESYTQNTIQVAIQSLRFFNSFAVLDLPAFQVIVQSGRHPTVLQKLCQLPFQYFSDPRLIKVLFPSLIAASYNNLQNKIILEQEMSCVLLATFIQDFAQTPGHVDNQSAYPKGKRGNLGDYLELANRFPQQAWDEARQFFLKKEKK", "length": 1352, "header": "tr|A0A9J7JQF0-1|A0A9J7JQF0_CRIGR Computationally mapped isoform of S phase cyclin A-associated protein in the endoplasmic reticulum isoform X3 OS=Cricetulus griseus OX=10029 GN=Scaper PE=4 SV=1 CANONICAL=A0A9J7JMI6-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 238, "start_aa": "Thr", "end_pos": 238, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr238", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JMI6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMI6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JMI6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMI6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100764741", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764741", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0M1U7-1", "protein_name": "S-phase cyclin A-associated protein in the ER", "gene_name": "Scaper", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": 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"evidence": [ { "id": "A0A9J7JMK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMK4/entry#names_and_taxonomy" } ] }, { "name": "olfactory receptor 148", "type": "synonym", "evidence": [ { "id": "XP_003513660", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003513660" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003616035.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003513660", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003513660" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JMK4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMK4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100766548", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMK4", "locus": {} } ], "crossref": [ { "id": "A0A9J7JMK4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JMK4", "database": "AlphaFoldDB", "categories": [] }, { "id": "100766548", "url": "https://www.ncbi.nlm.nih.gov/gene/100766548", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100766548", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766548", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IIYLQPA", "url": "https://omabrowser.org/oma/group/IIYLQPA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JMK4", "url": "https://www.orthodb.org/?gene=A0A9J7JMK4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR26453", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26453", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003513660", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003513660", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JMK4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMK4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JMK4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMK4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRNYTLLNEFILLGIPQTQGLETLLFVVFLFIYFFTLLGNLLIFTAIVSSSTLHTPMYFFLGLLSIFDMLFPSVTCPKMLLYLSGQSPAISYKGCAAQLFFYHLLGSTEGCLYSVMAYDRYVAICHPLRYMLIMKPGVCLSLVTIACLVGCLHATILTSFTFQLVYCAFNQVDYFFCDLPAVLPLACTDSKLAQKVGSINVGFLALMLLFSVCVSYAHIGIAILKIRSAEGRQKAFSTCSAHLTAILCAYGPVIIIYLQRTPNPLLGAVVQILNNIVSPMLNSLIYSLRNKEVKRSLRRVFQSVILGIHK", "length": 310, "header": "tr|A0A9J7JMK4-1|A0A9J7JMK4_CRIGR Isoform 1 of Olfactory receptor 148 OS=Cricetulus griseus OX=10029 GN=LOC100766548 PE=3 SV=1 CANONICAL=A0A9J7JMK4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JMK4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMK4/entry", "sequence": { "sequence": "MRNYTLLNEFILLGIPQTQGLETLLFVVFLFIYFFTLLGNLLIFTAIVSSSTLHTPMYFFLGLLSIFDMLFPSVTCPKMLLYLSGQSPAISYKGCAAQLFFYHLLGSTEGCLYSVMAYDRYVAICHPLRYMLIMKPGVCLSLVTIACLVGCLHATILTSFTFQLVYCAFNQVDYFFCDLPAVLPLACTDSKLAQKVGSINVGFLALMLLFSVCVSYAHIGIAILKIRSAEGRQKAFSTCSAHLTAILCAYGPVIIIYLQRTPNPLLGAVVQILNNIVSPMLNSLIYSLRNKEVKRSLRRVFQSVILGIHK", "length": 310, "header": "tr|A0A9J7JMK4-1|A0A9J7JMK4_CRIGR Isoform 1 of Olfactory receptor 148 OS=Cricetulus griseus OX=10029 GN=LOC100766548 PE=3 SV=1 CANONICAL=A0A9J7JMK4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023277414.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027268120", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268120" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JML4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JML4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113835321", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JML4", "locus": {} } ], "crossref": [ { "id": "113835321", "url": "https://www.ncbi.nlm.nih.gov/gene/113835321", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031626", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031626", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055453", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055453", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113835321", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113835321", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JML4", "url": "https://www.orthodb.org/?gene=A0A9J7JML4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16096", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16096", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16096:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16096:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15806", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15806", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23652", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23652", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027268120", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268120", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JML4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JML4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JML4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JML4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MESQCDYSMYFPAVPLPPRAELAGDPGRYRTLPRRNHLYLGETVRFLLVLRCRGGAGPGAGAGAGLASRGTWTELATALAALASVSAGGGXAGGGGAGDPDAEPPGGGDPGGGGLFRGCSPLLTHGPGPATSGGATTLPVEEPIVSTDEVIFPLTVSLDRLPPGTPKAKIVVTVWKREVEAPEVRDQGYLRLLQTRSPGETFRVEQSAFKAQVSTLLTLLPPPVLKCRQFTVAGKHLTVLKVLNSSSQEEISIWDIRILPNFNASYLPVMPDGSVLLVDNVCHQSGEVSMGSFCRLPGTSGYFPCPLSALEEHNFLFQLRGGEQPPPGAKEGLEVPLIAVVQWSTPKLPFTQSIYTHYRLPSVRLDRPCFVMTASCESPVRTYERFTVTYTLLNNLQDFLAVRLVWTPEHAQAGKQLCEEERRAMQAALDSIVCHTPLNNLGFSRKGSALTFSVAFQALRTGLFELSQHMKLKLQFTASVSHPPPEARPLSRKSSPSSPAVRDLVERHQASLGRSQSFSHQQPSRSHLMRSGSVMERRAITPPVASPVGRPLYLPPDKAVLSLDKIAKRECKVLVVEPVK", "length": 580, "header": "tr|A0A9J7JML4-1|A0A9J7JML4_CRIGR Isoform 1 of LOW QUALITY PROTEIN: microtubule-associated protein 11-like OS=Cricetulus griseus OX=10029 GN=LOC113835321 PE=4 SV=1 CANONICAL=A0A9J7JML4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JML4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JML4/entry", "sequence": { "sequence": "MESQCDYSMYFPAVPLPPRAELAGDPGRYRTLPRRNHLYLGETVRFLLVLRCRGGAGPGAGAGAGLASRGTWTELATALAALASVSAGGGXAGGGGAGDPDAEPPGGGDPGGGGLFRGCSPLLTHGPGPATSGGATTLPVEEPIVSTDEVIFPLTVSLDRLPPGTPKAKIVVTVWKREVEAPEVRDQGYLRLLQTRSPGETFRVEQSAFKAQVSTLLTLLPPPVLKCRQFTVAGKHLTVLKVLNSSSQEEISIWDIRILPNFNASYLPVMPDGSVLLVDNVCHQSGEVSMGSFCRLPGTSGYFPCPLSALEEHNFLFQLRGGEQPPPGAKEGLEVPLIAVVQWSTPKLPFTQSIYTHYRLPSVRLDRPCFVMTASCESPVRTYERFTVTYTLLNNLQDFLAVRLVWTPEHAQAGKQLCEEERRAMQAALDSIVCHTPLNNLGFSRKGSALTFSVAFQALRTGLFELSQHMKLKLQFTASVSHPPPEARPLSRKSSPSSPAVRDLVERHQASLGRSQSFSHQQPSRSHLMRSGSVMERRAITPPVASPVGRPLYLPPDKAVLSLDKIAKRECKVLVVEPVK", "length": 580, "header": "tr|A0A9J7JML4-1|A0A9J7JML4_CRIGR Isoform 1 of LOW QUALITY PROTEIN: microtubule-associated protein 11-like OS=Cricetulus griseus OX=10029 GN=LOC113835321 PE=4 SV=1 CANONICAL=A0A9J7JML4-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 541, "start_aa": "Thr", "end_pos": 541, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr541", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [], "pathway": [ { "id": "cge:113835321", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113835321", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cilium assembly", "id": "GO:0060271", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060271", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JML4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JML4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "alpha-tubulin binding", "id": "GO:0043014", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043014", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JML4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JML4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "TRAPPII protein complex", "id": "GO:1990071", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990071", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JML4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JML4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 244, "end_pos": 246, "annotation": "n_glycosylation_sequon" }, { "start_pos": 263, "end_pos": 265, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JML4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JML4" }, { "id": "PF23652", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23652" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TRAPP14 C-terminal", "eco_id": "ECO_0000259", "start_pos": 370, "end_pos": 579, "start_aa": "Phe", "end_aa": "Val", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7JML4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JML4" }, { "id": "PF15806", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15806" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TRAPP14 N-terminal", "eco_id": "ECO_0000259", "start_pos": 5, "end_pos": 369, "start_aa": "Cys", "end_aa": "Cys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 541 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 244, "end_pos": 246 }, { "start_pos": 263, "end_pos": 265 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JMQ0-1", "uniprot_ac": "A0A9J7JMQ0", "uniprot_id": "A0A9J7JMQ0_CRIGR", "mass": { "chemical_mass": 99984.0, "monoisotopic_mass": 99984.0 }, "refseq": { "ac": "XP_027241206", "name": "uncharacterized protein C2orf78 homolog", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027241206" }, "gene_names": [ { "name": "LOC100753093", "type": "recommended", "evidence": [ { "id": "A0A9J7JMQ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMQ0" } ] }, { "name": "LOC100753093", "type": "synonym", "evidence": [ { "id": "XP_027241206", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027241206" } ] } ], "protein_names": [ { "name": "Uncharacterized protein C2orf78 homolog", "type": "synonym", "evidence": [ { "id": "A0A9J7JMQ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMQ0/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein C2orf78 homolog", "type": "synonym", "evidence": [ { "id": "XP_027241206", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027241206" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 3% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003616353.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027241206.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027241206", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027241206" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JMQ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMQ0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100753093", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMQ0", "locus": {} } ], "crossref": [ { "id": "A0A9J7JMQ0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JMQ0", "database": "AlphaFoldDB", "categories": [] }, { "id": "100753093", "url": "https://www.ncbi.nlm.nih.gov/gene/100753093", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027898", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027898", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040292", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040292", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100753093", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753093", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JMQ0", "url": "https://www.orthodb.org/?gene=A0A9J7JMQ0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31466", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31466", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31466:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31466:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15442", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15442", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027241206", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027241206", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JMQ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMQ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JMQ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMQ0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKEDNRRYLEETYPEERDKDVSEDKKYELHNKNNFQSAPFYGTECALRPSVPVLRNSTPSAGSVCNFSRVSTPAVSSAWLLPSDPSTCCQQLMDSDSLYQRAGTTMLTTLTDQSQISTSALSYPDALPWDLTGSTDRREAAFRDFTVTIIDQNTTLSSLSMTAQCDNILDPNALVPFYPTLSASLIQGTPPQVSNQGDSLAPSYQEGNQVYYYDHNSLGPVMAGELLQCLQAYGSVSYPGSQASTLQPEMVMVLKEIQPTNVQTSFSTSAIYYPRSAETMTDTSLQVVDMQTSLGLIPSGQTLCLLQSSDLCNACTQDAQIKTPPVDGDRSLTAPIHSPSEFLALPPAPALEQTENNNLDEMTANLSTSLDSYEGTTENQDSSLFPLVHPNVQQALHYTDAERIWQKPASDNATLGSSSLDQKELGSMQSVMGSGIDFADMTTMVADIHLPQVFNSLSDVDQFQDTTATQSKDVRSDQTQESPSIISVPSDQVRKGNQNASELLDGAPQVKNQCQDVVEGEGAEGSARASEGAIDNMAKHLDGTAQKSAHSRPRISRAQGQDKNKRTRENKTKKKGELKPSCPRVKAEEKPTIPKTKRTRNPPELSQDSFKKPRTHLGMHMLESVQVFHPLGKKSEKKMGISSSRALLNLSSNKDPRTGPATTSLLDVSCDGRGPAKTPGNAQRPESSAQKECPTLSQYELPPPGKVKLVPLPFPALDKPQARPLSRKLLSLASRKPTAAYAVRPHSHSAQSTTLKPSQPAPASISVTASDKTAVPTTTYATRPNTTNPIQSCTRAQSFVSRPAPYRASSHTSLQRELVSAARNKVPSPPKPQTQYLLQDFSRQPIPWRKVDIPGPTISQPITAEQRPEREAMKRRAQQDRENAAKYTSLGKLQLFLQREKDMEISRYYGYAM", "length": 913, "header": "tr|A0A9J7JMQ0-1|A0A9J7JMQ0_CRIGR Isoform 1 of Uncharacterized protein C2orf78 homolog OS=Cricetulus griseus OX=10029 GN=LOC100753093 PE=4 SV=1 CANONICAL=A0A9J7JMQ0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JMQ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMQ0/entry", "sequence": { "sequence": "MKEDNRRYLEETYPEERDKDVSEDKKYELHNKNNFQSAPFYGTECALRPSVPVLRNSTPSAGSVCNFSRVSTPAVSSAWLLPSDPSTCCQQLMDSDSLYQRAGTTMLTTLTDQSQISTSALSYPDALPWDLTGSTDRREAAFRDFTVTIIDQNTTLSSLSMTAQCDNILDPNALVPFYPTLSASLIQGTPPQVSNQGDSLAPSYQEGNQVYYYDHNSLGPVMAGELLQCLQAYGSVSYPGSQASTLQPEMVMVLKEIQPTNVQTSFSTSAIYYPRSAETMTDTSLQVVDMQTSLGLIPSGQTLCLLQSSDLCNACTQDAQIKTPPVDGDRSLTAPIHSPSEFLALPPAPALEQTENNNLDEMTANLSTSLDSYEGTTENQDSSLFPLVHPNVQQALHYTDAERIWQKPASDNATLGSSSLDQKELGSMQSVMGSGIDFADMTTMVADIHLPQVFNSLSDVDQFQDTTATQSKDVRSDQTQESPSIISVPSDQVRKGNQNASELLDGAPQVKNQCQDVVEGEGAEGSARASEGAIDNMAKHLDGTAQKSAHSRPRISRAQGQDKNKRTRENKTKKKGELKPSCPRVKAEEKPTIPKTKRTRNPPELSQDSFKKPRTHLGMHMLESVQVFHPLGKKSEKKMGISSSRALLNLSSNKDPRTGPATTSLLDVSCDGRGPAKTPGNAQRPESSAQKECPTLSQYELPPPGKVKLVPLPFPALDKPQARPLSRKLLSLASRKPTAAYAVRPHSHSAQSTTLKPSQPAPASISVTASDKTAVPTTTYATRPNTTNPIQSCTRAQSFVSRPAPYRASSHTSLQRELVSAARNKVPSPPKPQTQYLLQDFSRQPIPWRKVDIPGPTISQPITAEQRPEREAMKRRAQQDRENAAKYTSLGKLQLFLQREKDMEISRYYGYAM", "length": 913, "header": "tr|A0A9J7JMQ0-1|A0A9J7JMQ0_CRIGR Isoform 1 of Uncharacterized protein C2orf78 homolog OS=Cricetulus griseus OX=10029 GN=LOC100753093 PE=4 SV=1 CANONICAL=A0A9J7JMQ0-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 857, "start_aa": "Thr", "end_pos": 857, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr857", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"length": 1682, "header": "tr|A0A9J7JMR1-1|A0A9J7JMR1_CRIGR Isoform 1 of Complement C5 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100753880 PE=4 SV=1 CANONICAL=A0A9J7JMR1-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 328, "start_aa": "Thr", "end_pos": 328, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr328", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", 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genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027266047", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266047" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JMR2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMR2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100751814", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMR2", "locus": {} } ], "crossref": [ { "id": "A0A9J7JMR2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JMR2", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00051", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00051", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100751814", "url": "https://www.ncbi.nlm.nih.gov/gene/100751814", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018247", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018247", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050230", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050230", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751814", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751814", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JMR2", "url": "https://www.orthodb.org/?gene=A0A9J7JMR2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23048", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23048", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23048:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23048:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13499", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13499", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027266047", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027266047", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JMR2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMR2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JMR2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMR2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVGADGNGTIDFPEFLTMMARKMKDKDSEEKIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADFHGDGQVNYEGFVQMMTAK", "length": 149, "header": "tr|A0A9J7JMR2-1|A0A9J7JMR2_CRIGR Isoform 1 of Calmodulin-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100751814 PE=3 SV=1 CANONICAL=A0A9J7JMR2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JMR2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMR2/entry", "sequence": { "sequence": "MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVGADGNGTIDFPEFLTMMARKMKDKDSEEKIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADFHGDGQVNYEGFVQMMTAK", "length": 149, "header": "tr|A0A9J7JMR2-1|A0A9J7JMR2_CRIGR Isoform 1 of Calmodulin-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100751814 PE=3 SV=1 CANONICAL=A0A9J7JMR2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027267173", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267173" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JMS0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMS0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113835203", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMS0", "locus": {} } ], "crossref": [ { "id": "A0A9J7JMS0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JMS0", "database": "AlphaFoldDB", "categories": [] }, { "id": "113835203", "url": "https://www.ncbi.nlm.nih.gov/gene/113835203", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR018903", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018903", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113835203", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113835203", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JMS0", "url": "https://www.orthodb.org/?gene=A0A9J7JMS0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31813", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31813", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31813:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31813:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10630", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10630", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027267173", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027267173", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JMS0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMS0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JMS0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMS0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MHRVSCRRQTTAILELGTAAHKSIFCIGLCRVPATNMLGARPRSPEDDLLQELNPAKHHHVQEPSGPAREDLRSFVVVPAGYALKIHLEDCDLLLKPTPGSITQVSHPGFGFNIILVPQDLQVVAQPGQPVDGPCRPQEASLVDTAQEHLLVLQRGYSSASGSHIKGWENASRPAQESFMTPERHSPAVRVPEPSVHFTEKLSPMFENPVPPCPGSPSAPPSAERYAPWSIWSLRDSTVFPLPSSPLQPLPPSPPTSLKARRTQNHQKSPCTPCKTRKRLF", "length": 281, "header": "tr|A0A9J7JMS0-1|A0A9J7JMS0_CRIGR Isoform 1 of Proline-rich protein 23A3-like OS=Cricetulus griseus OX=10029 GN=LOC113835203 PE=3 SV=1 CANONICAL=A0A9J7JMS0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JMS0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMS0/entry", "sequence": { "sequence": "MHRVSCRRQTTAILELGTAAHKSIFCIGLCRVPATNMLGARPRSPEDDLLQELNPAKHHHVQEPSGPAREDLRSFVVVPAGYALKIHLEDCDLLLKPTPGSITQVSHPGFGFNIILVPQDLQVVAQPGQPVDGPCRPQEASLVDTAQEHLLVLQRGYSSASGSHIKGWENASRPAQESFMTPERHSPAVRVPEPSVHFTEKLSPMFENPVPPCPGSPSAPPSAERYAPWSIWSLRDSTVFPLPSSPLQPLPPSPPTSLKARRTQNHQKSPCTPCKTRKRLF", "length": 281, "header": "tr|A0A9J7JMS0-1|A0A9J7JMS0_CRIGR Isoform 1 of Proline-rich protein 23A3-like OS=Cricetulus griseus OX=10029 GN=LOC113835203 PE=3 SV=1 CANONICAL=A0A9J7JMS0-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 98, "start_aa": "Thr", "end_pos": 98, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr98", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027269184.1. 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"tr|A0A9J7JX98-1|A0A9J7JX98_CRIGR Computationally mapped isoform of PI-PLC X domain-containing protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Plcxd1 PE=4 SV=1 CANONICAL=A0A9J7JNE7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"https://www.ebi.ac.uk/QuickGO/term/GO:0008081", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JNE7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNE7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 245, "end_pos": 247, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JNE7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNE7" }, { "id": "SM00148", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00148" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Phosphatidylinositol-specific phospholipase C X", "eco_id": "ECO_0000259", "start_pos": 25, "end_pos": 194, "start_aa": "Asp", "end_aa": "Tyr", "glycosite_overlap": [] } ], "binding_sites": [], 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JNE8-1", "uniprot_ac": "A0A9J7JNE8", "uniprot_id": "A0A9J7JNE8_CRIGR", "mass": { "chemical_mass": 42717.0, "monoisotopic_mass": 42717.0 }, "refseq": { "ac": "XP_007627284", "name": "uncharacterized protein C11orf53 homolog", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007627284" }, "gene_names": [ { "name": "CUNH11orf53", "type": "recommended", "evidence": [ { "id": "A0A9J7JNE8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNE8" } ] }, { "name": "CUNH11orf53", "type": "synonym", "evidence": [ { "id": "XP_007627284", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007627284" } ] } ], "protein_names": [ { "name": "Uncharacterized protein C11orf53 homolog", "type": "synonym", "evidence": [ { "id": "A0A9J7JNE8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNE8/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein C11orf53 homolog", "type": "synonym", "evidence": [ { "id": "XP_007627284", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007627284" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 27% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613694.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_007627284.2. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007627284", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007627284" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JNE8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNE8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH11orf53", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNE8", "locus": {} } ], "crossref": [ { "id": "A0A9J7JNE8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JNE8", "database": "AlphaFoldDB", "categories": [] }, { "id": "100753897", "url": "https://www.ncbi.nlm.nih.gov/gene/100753897", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR037655", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037655", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047571", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047571", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100753897", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753897", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JNE8", "url": "https://www.orthodb.org/?gene=A0A9J7JNE8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR28376", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28376", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28376:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28376:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF17721", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17721", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007627284", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007627284", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JNE8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNE8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JNE8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNE8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGAEELEPPALSVIMPSFCLWGYSQLEEVQPQRTGCHSHDRLLVKCRDVPDPKARRKVIPETGDTEQARDKLEQGSKTSQIKFILSRTVEEKWEGGEGGEERGKGVSGDYSKRVYQGVRVKHTVKDLLAEKRSRQTSNSRLNGSVSSSQPPFVQMPGSPVMSGYYGVRRSFLSDSDFHTSKQFSNDLYTSSMTKPFTCESSAGQSHTGLLESYLAEPYGDYRPPALTSTPSSLFSTSTLPPLLPPPFPNDPTHFVFRDSWEQTVSDGLSQPDPVPADALQTLPPSTSCLSQLESGSSTQHRSMGWGASLPGAQPYSLHALEDLHHTPGYPAPSSYPFTSFMTVSSDLQPKVVPLSPEEGSDASSLHDPSPWTKEDGSMAWGSYECRRAY", "length": 389, "header": "tr|A0A9J7JNE8-1|A0A9J7JNE8_CRIGR Isoform 1 of Uncharacterized protein C11orf53 homolog OS=Cricetulus griseus OX=10029 GN=CUNH11orf53 PE=4 SV=1 CANONICAL=A0A9J7JNE8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JNE8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNE8/entry", "sequence": { "sequence": "MGAEELEPPALSVIMPSFCLWGYSQLEEVQPQRTGCHSHDRLLVKCRDVPDPKARRKVIPETGDTEQARDKLEQGSKTSQIKFILSRTVEEKWEGGEGGEERGKGVSGDYSKRVYQGVRVKHTVKDLLAEKRSRQTSNSRLNGSVSSSQPPFVQMPGSPVMSGYYGVRRSFLSDSDFHTSKQFSNDLYTSSMTKPFTCESSAGQSHTGLLESYLAEPYGDYRPPALTSTPSSLFSTSTLPPLLPPPFPNDPTHFVFRDSWEQTVSDGLSQPDPVPADALQTLPPSTSCLSQLESGSSTQHRSMGWGASLPGAQPYSLHALEDLHHTPGYPAPSSYPFTSFMTVSSDLQPKVVPLSPEEGSDASSLHDPSPWTKEDGSMAWGSYECRRAY", "length": 389, "header": "tr|A0A9J7JNE8-1|A0A9J7JNE8_CRIGR Isoform 1 of Uncharacterized protein C11orf53 homolog OS=Cricetulus griseus OX=10029 GN=CUNH11orf53 PE=4 SV=1 CANONICAL=A0A9J7JNE8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"UniProtKB", "id": "A0A9J7JNE8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNE8" } ], "pmid": "" }, { "name": "POU domain binding", "id": "GO:0070974", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070974", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JNE8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNE8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JNE8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNE8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JNE8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNE8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], 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8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027268273", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268273" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JNJ1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNJ1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Filip1l", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNJ1", "locus": {} } ], "crossref": [ { "id": "100755572", "url": "https://www.ncbi.nlm.nih.gov/gene/100755572", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR050719", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050719", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755572", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755572", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JNJ1", "url": "https://www.orthodb.org/?gene=A0A9J7JNJ1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23166", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23166", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23166:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23166:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_027268273", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268273", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JNJ1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNJ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JNJ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNJ1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVVDEQQRLTAQLALQRQKTQDLTTRAKETHGKLALAEARAQQEEQKATRLEKELQTQTTLFHQNQDTIMAKLTNEDSQNRQLRQKLAALSRQIDELEETNRSLRKAEEELQDIKEKINKGECGNTGIMAEVDELRKRVLDMEGKDEELIKMEEQCRDLNKRLEKETAQSKDFKLEVEKLSKRITALEKLEDALDKSKQECYSLKCSLDKEKMTTKQLAEELESLNTRIKELEAIESRLEKTEFTLKDDLTKLKTLTVMLVDERKTMSEKLKQTEDKLQTTASQLQAEQNKVTTVTEKLIEETKRALKSKTDAEEKMYTVTKERDDLRNKLKAEEEKGHDLLSKMNILKNRLQSLEAIEKDFVKNKLNQDSSKSTTALHQENNKIKELSQEVEKLKLKLKDMKAIEDDLMKTEDEYETLERRYANERDKAQFLSEELEHVKMELAKYKLAEKTESSHEQWLFKRLQEEEAKSGHLSREVDALKEKIHEYMATEDLICHLQGDHSILQKKLNQQENRNRDLGREIENLTKELERYRHFNKSLRPSLNGRRISDPQVFSKEVQTEVADNEPPDYKSLIPLERAVINGQLYEESEDQDEDPNEESVLSFKCNPSTSLPMNRKLWIPWMKSKEGHPQNGKIQTKSNGNFVQPGDLVLSHTPGQPLHIKVTPDHAQNTATLEITSPTTESPHSYTSTAVIPNCGTPKQRITILQNASITPVKSKTSTESLSNLEQSVPPVTMATFARAQTPESCGSVTPERTMSPIQVLAMAGSASSPEQGRSPEPIEISAKHAIFRVSPDRQSSWQFQRSNSNSSSVITTEDNKIHIHLGSPYMQAVASPVRPASPSAPLQDNRTQGLTNGALNKTTNKVTSSITITPTATPLPRQSQITVSNIYN", "length": 892, "header": "tr|A0A9J7JNJ1-1|A0A9J7JNJ1_CRIGR Isoform 1 of Filamin A-interacting protein 1-like OS=Cricetulus griseus OX=10029 GN=Filip1l PE=4 SV=1 CANONICAL=A0A9J7JNJ1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JNJ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNJ1/entry", "sequence": { "sequence": "MVVDEQQRLTAQLALQRQKTQDLTTRAKETHGKLALAEARAQQEEQKATRLEKELQTQTTLFHQNQDTIMAKLTNEDSQNRQLRQKLAALSRQIDELEETNRSLRKAEEELQDIKEKINKGECGNTGIMAEVDELRKRVLDMEGKDEELIKMEEQCRDLNKRLEKETAQSKDFKLEVEKLSKRITALEKLEDALDKSKQECYSLKCSLDKEKMTTKQLAEELESLNTRIKELEAIESRLEKTEFTLKDDLTKLKTLTVMLVDERKTMSEKLKQTEDKLQTTASQLQAEQNKVTTVTEKLIEETKRALKSKTDAEEKMYTVTKERDDLRNKLKAEEEKGHDLLSKMNILKNRLQSLEAIEKDFVKNKLNQDSSKSTTALHQENNKIKELSQEVEKLKLKLKDMKAIEDDLMKTEDEYETLERRYANERDKAQFLSEELEHVKMELAKYKLAEKTESSHEQWLFKRLQEEEAKSGHLSREVDALKEKIHEYMATEDLICHLQGDHSILQKKLNQQENRNRDLGREIENLTKELERYRHFNKSLRPSLNGRRISDPQVFSKEVQTEVADNEPPDYKSLIPLERAVINGQLYEESEDQDEDPNEESVLSFKCNPSTSLPMNRKLWIPWMKSKEGHPQNGKIQTKSNGNFVQPGDLVLSHTPGQPLHIKVTPDHAQNTATLEITSPTTESPHSYTSTAVIPNCGTPKQRITILQNASITPVKSKTSTESLSNLEQSVPPVTMATFARAQTPESCGSVTPERTMSPIQVLAMAGSASSPEQGRSPEPIEISAKHAIFRVSPDRQSSWQFQRSNSNSSSVITTEDNKIHIHLGSPYMQAVASPVRPASPSAPLQDNRTQGLTNGALNKTTNKVTSSITITPTATPLPRQSQITVSNIYN", "length": 892, "header": "tr|A0A9J7JNJ1-1|A0A9J7JNJ1_CRIGR Isoform 1 of Filamin A-interacting protein 1-like OS=Cricetulus griseus OX=10029 GN=Filip1l PE=4 SV=1 CANONICAL=A0A9J7JNJ1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027272411", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272411" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JNJ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNJ3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Znf839", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNJ3", "locus": {} } ], "crossref": [ { "id": "100772816", "url": "https://www.ncbi.nlm.nih.gov/gene/100772816", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] 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Isoform 1 of LOW QUALITY PROTEIN: zinc finger protein 839 isoform X2 OS=Cricetulus griseus OX=10029 GN=Znf839 PE=4 SV=1 CANONICAL=A0A9J7JNJ3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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{ "id": "A0A9J7JNK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNK4/entry#names_and_taxonomy" } ] }, { "name": "transmembrane protein 233", "type": "synonym", "evidence": [ { "id": "XP_003495973", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495973" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 42% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613605.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_003495973.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003495973", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495973" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JNK4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNK4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tmem233", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNK4", "locus": {} } ], "crossref": [ { "id": "A0A9J7JNK4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JNK4", "database": "AlphaFoldDB", "categories": [] }, { "id": "100759565", "url": "https://www.ncbi.nlm.nih.gov/gene/100759565", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007593", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007593", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051423", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051423", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759565", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759565", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JNK4", "url": "https://www.orthodb.org/?gene=A0A9J7JNK4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14948", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14948", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14948:SF19", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14948:SF19", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04505", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04505", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003495973", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495973", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JNK4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNK4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JNK4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNK4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSQYASRSDSKGALDSSSPEANTEDDKTEEDLPEPKNYLWLTIVACFCPAYPVNIVALVFSIMSQNSYNDGDYEGARRLGRNAKWVAIASIIIGLVIIGVFCVVQFYRNEVGGTVNGILQCPVGSGTRRARERLLPSVRKLVQGAARNDPLRLRAERPEEARSQDGNGSVAC", "length": 172, "header": "tr|A0A9J7JNK4-1|A0A9J7JNK4_CRIGR Isoform 1 of Transmembrane protein 233 OS=Cricetulus griseus OX=10029 GN=Tmem233 PE=3 SV=1 CANONICAL=A0A9J7JNK4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JNK4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNK4/entry", "sequence": { "sequence": "MSQYASRSDSKGALDSSSPEANTEDDKTEEDLPEPKNYLWLTIVACFCPAYPVNIVALVFSIMSQNSYNDGDYEGARRLGRNAKWVAIASIIIGLVIIGVFCVVQFYRNEVGGTVNGILQCPVGSGTRRARERLLPSVRKLVQGAARNDPLRLRAERPEEARSQDGNGSVAC", "length": 172, "header": "tr|A0A9J7JNK4-1|A0A9J7JNK4_CRIGR Isoform 1 of Transmembrane protein 233 OS=Cricetulus griseus OX=10029 GN=Tmem233 PE=3 SV=1 CANONICAL=A0A9J7JNK4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JNK4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNK4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JNK4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNK4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100759565", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759565", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JNK4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNK4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 167, "end_pos": 169, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 167, "end_pos": 169 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JNT5-1", "uniprot_ac": "A0A9J7JNT5", "uniprot_id": "A0A9J7JNT5_CRIGR", "mass": { "chemical_mass": 122068.0, "monoisotopic_mass": 122068.0 }, "refseq": { "ac": "XP_007652164", "name": "centrosomal protein of 131 kDa isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652164" }, "gene_names": [ { "name": "Cep131", "type": "recommended", "evidence": [ { "id": "A0A9J7JNT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNT5" } ] }, { "name": "Cep131", "type": "synonym", "evidence": [ { "id": "XP_007652164", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652164" } ] } ], "protein_names": [ { "name": "Centrosomal protein of 131 kDa isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7JNT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNT5/entry#names_and_taxonomy" } ] }, { "name": "centrosomal protein of 131 kDa isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007652164", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652164" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613637.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007652164", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652164" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JNT5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNT5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cep131", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNT5", "locus": {} } ], "crossref": [ { "id": "100762484", "url": "https://www.ncbi.nlm.nih.gov/gene/100762484", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR030465", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030465", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762484", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762484", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2LBH4", "url": "https://www.orthodb.org/?gene=A0A8C2LBH4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JNT5", "url": "https://www.orthodb.org/?gene=A0A9J7JNT5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JW99", "url": "https://www.orthodb.org/?gene=A0A9J7JW99", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31540", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31540", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31540:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31540:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27681", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27681", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27695", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27695", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007652164", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652164", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LBH4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LBH4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LBH4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LBH4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JNT5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNT5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JNT5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNT5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JW99", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JW99", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JW99-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JW99-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKGSRTISAAPEGSPEGVDLSLVGLPPPMSQRPSSASATKSIVRSVSVATGTEPRKKALEAAGPGGSRAINNLRRSNSTTQVNQSWTSSPRPADPSDFLMLFEGGASGRRRMASPSKASSEKEASWNVLDDQPRGFGLPASVQSPSTLDSALGPRRKECALAPSFTVNNRSNKGAVGNCVTTMVHNHYSSLKKASPPKSSNQTAPSLNNIIKAAAHESTEGSDFGKPRKNFSGGSHSTRGATSLLRRKEVTEEEAERFIHQVNQAAVTIQRWYRRQVQRRQAGAASLEHLLASKREGQRQRLGRGNLLDLHRQEETARKKAREEKARRARQAAIQELQQKRAQKASEAEHRPPKDRPETRAPGQPRPMQEPPLVPGSVTHPALKANNANVSVYPTGPGDPCPPASESFPQPQQPPEDKPQAIHSQDAAREDLEVLGTARGKARARATLDELLDTLRILEEEPEPLPRPRTYHKDRYAWTDEPPMLGRLQEDDTNSLTADNLEKFGKLSAPPGPPDDGTLLSEAKLQSIMNFLDEMERSAQDQPAPHRESLVLEAGPRLLELGSERSASMMRLKLEVEEKKQAMVLLQRALAQQRDLTIRRVKETEKELSRQLRQQKEHYEATIQRHLSFIDQLIEDKKILSEKCEAVVAELKHGDQRCQERVAQMQEQHELEIKKLKELMSATEKIRREKWINEKTKKIKEITVRGLEPEIQKLIAKHKQEVRRLRGLHEAELQQREEQAAQRHLRQEEELREHLEREKEALARQERERAQQRFEQHLEQEHQALEQQRRRLYNEVAEEKERLGQQAARQRAELEESSATLTQTLRAEFEKSREEQEQRHQMELKALKDQLEAERQAWVASCAKKEEAWMLNRERELKEEIRKGRDQEIELVIHRLEADMALVKEESERAAESRVKRVRDKYELELSELEQSERKLQERCTELKGRLGEAEGEKERLQSLVRQKEKELEDVRVVNTQMCGERASLAQVVRQEFADQLAASQEENQRVKAELAELQARQQMELDEVHRRVKTALAKKEEAVNSLRKQHEAAVKRADHLEELLEQHRRPSLNAK", "length": 1072, "header": "tr|A0A9J7JNT5-1|A0A9J7JNT5_CRIGR Isoform 1 of Centrosomal protein of 131 kDa isoform X1 OS=Cricetulus griseus OX=10029 GN=Cep131 PE=4 SV=1 CANONICAL=A0A9J7JNT5-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LBH4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LBH4/entry", "sequence": { "sequence": "MKGSRTISAAPEGSPEGVDLSLVGLPPPMSQRPSSASATKSIVRSVSVATGTEPRKKALEAAGPGGSRAINNLRRSNSTTQVNQSWTSSPRPADPSDFLMLFEGGASGRRRMASPSKASSEKEASWNVLDDQPRGFGLPASVQSPSTLDSALGPRRKECALAPSFTVNNRSNKGAVGNCVTTMVHNHYSSLKKASPPKSSNQTAPSLNNIIKAAAHESTEGSDFGKPRKNFSGGSHSTRGATSLLRRKEVTEEEAERFIHQVNQAAVTIQRWYRRQVQRRQAGAASLEHLLASKREGQRQRLGRGNLLDLHRQEETARKKAREEKARRARQAAIQELQQKRAQKASEAEHRPPKDRPETRAPGQPRPMQEPPLVPGSVTHPALKANNANVSVYPTGPGDPCPPASESFPQPQQPPEDKPQAIHSQDAAREDLEVLGTARGKARARATLDELLDTLRILEEEPEPLPRPRTYHKDRYAWTDEEDDTNSLTADNLEKFGKLSAPPGPPDDGTLLSEAKLQSIMNFLDEMERSAQDQPAPHRESLVLEAGPRLLELGSERSASMMRLKLEVEEKKQAMVLLQRALAQQRDLTIRRVKETEKELSRQLRQQKEHYEATIQRHLSFIDQLIEDKKILSEKCEAVVAELKHGDQRCQERVAQMQEQHELEIKKLKELMSATEKIRREKWINEKTKKIKEITVRGLEPEIQKLIAKHKQEVRRLRGLHEAELQQREEQAAQRHLRQEEELREHLEREKEALARQERERAQQRFEQHLEQEHQALEQQRRRLYNEVAEEKERLGQQAARQRAELEESSATLTQTLRAEFEKSREEQEQRHQMELKALKDQLEAERQAWVASCAKKEEAWMLNRERELKEEIRKGRDQEIELVIHRLEADMALVKEESERAAESRVKRVRDKYELELSELEQSERKLQERCTELKGRLGEAEGEKERLQSLVRQKEKELEDVRVVNTQMCGERASLAQVVRQEFADQLAASQEENQRVKAELAELQARQQMELDEVHRRVKTALAKKEEAVNSLRKQHEAAVKRADHLEELLEQHRRPSLNAK", "length": 1064, "header": "tr|A0A8C2LBH4-1|A0A8C2LBH4_CRIGR Computationally mapped isoform of Centrosomal protein of 131 kDa isoform X2 OS=Cricetulus griseus OX=10029 GN=Cep131 PE=4 SV=1 CANONICAL=A0A9J7JNT5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JNT5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNT5/entry", "sequence": { "sequence": "MKGSRTISAAPEGSPEGVDLSLVGLPPPMSQRPSSASATKSIVRSVSVATGTEPRKKALEAAGPGGSRAINNLRRSNSTTQVNQSWTSSPRPADPSDFLMLFEGGASGRRRMASPSKASSEKEASWNVLDDQPRGFGLPASVQSPSTLDSALGPRRKECALAPSFTVNNRSNKGAVGNCVTTMVHNHYSSLKKASPPKSSNQTAPSLNNIIKAAAHESTEGSDFGKPRKNFSGGSHSTRGATSLLRRKEVTEEEAERFIHQVNQAAVTIQRWYRRQVQRRQAGAASLEHLLASKREGQRQRLGRGNLLDLHRQEETARKKAREEKARRARQAAIQELQQKRAQKASEAEHRPPKDRPETRAPGQPRPMQEPPLVPGSVTHPALKANNANVSVYPTGPGDPCPPASESFPQPQQPPEDKPQAIHSQDAAREDLEVLGTARGKARARATLDELLDTLRILEEEPEPLPRPRTYHKDRYAWTDEPPMLGRLQEDDTNSLTADNLEKFGKLSAPPGPPDDGTLLSEAKLQSIMNFLDEMERSAQDQPAPHRESLVLEAGPRLLELGSERSASMMRLKLEVEEKKQAMVLLQRALAQQRDLTIRRVKETEKELSRQLRQQKEHYEATIQRHLSFIDQLIEDKKILSEKCEAVVAELKHGDQRCQERVAQMQEQHELEIKKLKELMSATEKIRREKWINEKTKKIKEITVRGLEPEIQKLIAKHKQEVRRLRGLHEAELQQREEQAAQRHLRQEEELREHLEREKEALARQERERAQQRFEQHLEQEHQALEQQRRRLYNEVAEEKERLGQQAARQRAELEESSATLTQTLRAEFEKSREEQEQRHQMELKALKDQLEAERQAWVASCAKKEEAWMLNRERELKEEIRKGRDQEIELVIHRLEADMALVKEESERAAESRVKRVRDKYELELSELEQSERKLQERCTELKGRLGEAEGEKERLQSLVRQKEKELEDVRVVNTQMCGERASLAQVVRQEFADQLAASQEENQRVKAELAELQARQQMELDEVHRRVKTALAKKEEAVNSLRKQHEAAVKRADHLEELLEQHRRPSLNAK", "length": 1072, "header": "tr|A0A9J7JNT5-1|A0A9J7JNT5_CRIGR Isoform 1 of Centrosomal protein of 131 kDa isoform X1 OS=Cricetulus griseus OX=10029 GN=Cep131 PE=4 SV=1 CANONICAL=A0A9J7JNT5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JW99-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JW99/entry", "sequence": { "sequence": "MKGSRTISAAPEGSPEGVDLSLVGLPPPMSQRPSSASATKSIVRSVSVATGTEPRKKALEAAGPGGSRAINNLRRSNSTTQVNQSWTSSPRPADPSDFLMLFEGGASGRRRMASPSKASSEKEASWNVLDDQPRGFGLPASVQSPSTLDSALGPRRKECALAPSFTVNNRSNKGAVGNCVTTMVHNHYSSLKKASPPKSSNQTAPSLNNIIKAAAHESTEGSDFGKPRKNFSGGSHSTRGATSLLRRKEVTEEEAERFIHQVNQAAVTIQRWYRRQVQRRQAGAASLEHLLASKREGQRQRLGRGNLLDLHRQEETARKKAREEKARRARQAAIQELQQKRAQKASEAEHRPPKDRPETRAPGQPRPMQEPPLVPGSVTHPALKANNANVSVYPTGPGDPCPPASESFPQPQQPPEDKPQAIHSQDAAREDLEVLGTARGKARARATLDELLDTLRILEEEPEPLPRPRTYHKDRYAWTDEPPMLGRLQEDDTNSLTADNLEKFGKLSAPPGPPDDGTLLSEAKLQSIMNFLDEMERSAQDQPAPHRESLVLEAGPRLLELGSERSASMMRLKLEVEEKKQAMVLLQRALAQQRDLTIRRVKETEKELSRQLRQQKEHYEATIQRHLSFIDQLIEDKKILSEKCEAVVAELKHGDQRCQERVAQMQEQHELEIKKLKELMSATEKIRREKWINEKTKKIKEITVRGLEPEIQKLIAKHKQEVRRLRGLHEAELQQREEQAAQRHLRQEEELREHLEREKEALARQERERAQQRFEQHLEQEHQALEQQRRRLYNEVAEEKERLGQQAARQRAELEESSATLTQTLRAEFEKSREEQEQRHQMELKALKDQLEAERQAWVASCAKKEEAWMLNRERELKEEIRKGRDQEIELVIHRLEADMALVKEESERAAESRVKRVRDKYELELSELEQSERKLQERCTELKGRLGEAEGEKERLQSLVRQKEKELEDVRVVNTQMCGERASLAQVVRQEFADQLAASQEENQRVKAELAELQARQQMELDEVHRRGPAAGRVTVSTQHLSPS", "length": 1045, "header": "tr|A0A9J7JW99-1|A0A9J7JW99_CRIGR Computationally mapped isoform of Centrosomal protein of 131 kDa isoform X3 OS=Cricetulus griseus OX=10029 GN=Cep131 PE=4 SV=1 CANONICAL=A0A9J7JNT5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JNT5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNT5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JNT5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNT5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100762484", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762484", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "regulation of centrosome duplication", "id": "GO:0010824", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010824", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JNT5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNT5" } ], "pmid": "" }, { "name": "intraciliary transport involved in cilium assembly", "id": "GO:0035735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035735", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JNT5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNT5" } ], "pmid": "" }, { "name": "positive regulation of cell population proliferation", "id": "GO:0008284", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008284", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JNT5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNT5" } ], "pmid": "" }, { "name": "positive regulation of intracellular protein transport", "id": "GO:0090316", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090316", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JNT5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNT5" } ], "pmid": "" }, { "name": "protein localization to centrosome", "id": "GO:0071539", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071539", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JNT5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNT5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 7, "go_terms": [ { "name": "cilium", "id": "GO:0005929", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005929", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JNT5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNT5" } ], "pmid": "" }, { "name": "centriolar satellite", "id": "GO:0034451", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034451", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JNT5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNT5" } ], "pmid": "" }, { "name": "acrosomal vesicle", "id": "GO:0001669", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001669", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JNT5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNT5" } ], "pmid": "" }, { "name": "centriole", "id": "GO:0005814", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005814", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JNT5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNT5" } ], "pmid": "" }, { "name": "ciliary basal body", "id": "GO:0036064", 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Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027270053", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027270053" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JNW3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNW3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113835514", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNW3", "locus": {} } ], "crossref": [ { "id": "A0A9J7JNW3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JNW3", "database": "AlphaFoldDB", "categories": [] }, { "id": "113835514", "url": "https://www.ncbi.nlm.nih.gov/gene/113835514", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR053127", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053127", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113835514", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113835514", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JNW3", "url": "https://www.orthodb.org/?gene=A0A9J7JNW3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR37929", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37929", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR37929:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37929:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_027270053", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027270053", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JNW3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNW3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JNW3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNW3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPAAPALRPPPPPTTPAPPAPSRPAPPIPEAEDITGPDVTEAVGITGPDVTEAEVITGPDVTEAEDITGPDVTEAVDITGPDVTEAEVITGPDVTEAVVITGPDVTEAVDITGPDVTEAEDITGPDVTESVDITGPDVTEAVDITGPDVTEAVDITGPDVTEAVDITGPDVTEAVGITGSDVTEAVGITGPDVTEAVGITGPDVTESVDITGPDVTEAVDITGPDVTEAVDITGSDVTESVDITGPDVTEAVDITGPDVTEAVDITGSDVTESVDITGPDVTEAVVITGPDVTEAVNITGPDVTEAVGITGPDVTEAEDITGPDVTETEDITGPDVTEAVVITGPDVTEAEDITGPDVTEAVDITGPDVTEAVVITGPDVTEAVDITGPDVTEAEVITGPDVTEAVDITGPDVTEAVGITGPDVTEAEDITGSDVTEAVDITGPDVTEAVDITGPDVTEAVGITGPDVTEAEDITEAVDITGPDVTEAVGITGPDVTEAEDITGSDVTEAVVITGPDVTEAVNITGPDVTEAVGITGPDVTEAEVITGPDVTEAEDITGPDVTEAVVITGPDVTEAVVITGPDVTEAGHHRALMSQRLWSSQVLMSQRLWSSQGPDVTEAVVITGPDVTEAVVITGPDVTEAVVITGPDVT", "length": 651, "header": "tr|A0A9J7JNW3-1|A0A9J7JNW3_CRIGR Isoform 1 of Galactose-specific cell agglutination protein 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This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. 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"A0A9J7JPB7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPB7/entry", "sequence": { "sequence": "MAASETVRLRLQFDYPPPATPHCTVFWLLVDLNRCRVVTDLISLIRQRFGFSSGALLGLYLEGGLLPPAESARLVRDNDCLRVKLEDGELPENFIVSNGGDSNFLLRKAKKRAFKLVDNEEMELGYKCSKKHWRKLEDSSYKEKALDLETKPVPDEVGVGRTKSKKKSKVTDSPAEEEEEARKKSPKKKEKCEHKKQTKAPKSPKTQMPKEWSPQNCLPKGSPRSSLTKALRKSSAGPKGGSGYLSESDSCPESVSDSLCNITVSGITFSEKLSAELLNDGPAAKTAAVNKQASKPAFPFSSGKGKGKAIRTSSSSSDSSSESEDQFLVSKNISEGASDFLKTAGLFAGQGCPGLTLQTSGVMGWKPSDSSRGRQALGPAPSVPVPTSLGRGWGRGEDFLLGKGLRGRGIRGRGRGRGPAISCILNRSSESQKQKQLNDILTNSSTVIQNPVETHKKDYSLLPLLAAAPQVGEKIAFKLLELTSDYSPDVSDYKEGKILSHDPETQQVDIEVLSDLPALKEPGKFDLVYHNENGTEVVEYAVTQERRITVLWKELIDPRLIIDSSSSISSK", "length": 571, "header": "tr|A0A9J7JPB7-1|A0A9J7JPB7_CRIGR Isoform 1 of Coilin isoform X1 OS=Cricetulus griseus OX=10029 GN=Coil PE=4 SV=1 CANONICAL=A0A9J7JPB7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JYE9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYE9/entry", "sequence": { "sequence": "MCHKPAFSGLRLVQETKAGRKDSIVFLTCWMSEEGVRLGGGGAIPAFGRQRHVDLCEFEASLVVSTEVKLEDGELPENFIVSNGGDSNFLLRKAKKRAFKLVDNEEMELGYKCSKKHWRKLEDSSYKEKALDLETKPVPDEVGVGRTKSKKKSKVTDSPAEEEEEARKKSPKKKEKCEHKKQTKAPKSPKTQMPKEWSPQNCLPKGSPRSSLTKALRKSSAGPKGGSGYLSESDSCPESVSDSLCNITVSGITFSEKLSAELLNDGPAAKTAAVNKQASKPAFPFSSGKGKGKAIRTSSSSSDSSSESEDQFLVSKNISEGASDFLKTAGLFAGQGCPGLTLQTSGVMGWKPSDSSRGRQALGPAPSVPVPTSLGRGWGRGEDFLLGKGLRGRGIRGRGRGRGPAISCILNRSSESQKQKQLNDILTNSSTVIQNPVETHKKDYSLLPLLAAAPQVGEKIAFKLLELTSDYSPDVSDYKEGKILSHDPETQQVDIEVLSDLPALKEPGKFDLVYHNENGTEVVEYAVTQERRITVLWKELIDPRLIIDSSSSISSK", "length": 556, "header": "tr|A0A9J7JYE9-1|A0A9J7JYE9_CRIGR Computationally mapped isoform of Coilin isoform X2 OS=Cricetulus griseus OX=10029 GN=Coil PE=4 SV=1 CANONICAL=A0A9J7JPB7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JPB7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPB7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100760263", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760263", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "U2 snRNA binding", "id": "GO:0030620", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030620", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JPB7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPB7" } ], "pmid": "" }, { "name": "U1 snRNA binding", "id": "GO:0030619", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030619", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JPB7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPB7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "Cajal body", "id": "GO:0015030", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015030", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JPB7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPB7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "spliceosomal snRNP assembly", "id": "GO:0000387", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000387", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JPB7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPB7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 261, "end_pos": 263, "annotation": "n_glycosylation_sequon" }, { "start_pos": 332, "end_pos": 334, "annotation": "n_glycosylation_sequon" }, { "start_pos": 426, "end_pos": 428, "annotation": "n_glycosylation_sequon" }, { "start_pos": 443, "end_pos": 445, 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"uniprotkb_annotation": "Coilin tudor", "eco_id": "ECO_0000259", "start_pos": 456, "end_pos": 548, "start_aa": "Lys", "end_aa": "Ile", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 261, "end_pos": 263 }, { "start_pos": 332, "end_pos": 334 }, { "start_pos": 426, "end_pos": 428 }, { "start_pos": 443, "end_pos": 445 }, { "start_pos": 533, "end_pos": 535 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"monoisotopic_mass": 51610.0 }, "refseq": { "ac": "XP_027273575", "name": "G-protein coupled receptor 39", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273575" }, "gene_names": [ { "name": "Gpr39", "type": "recommended", "evidence": [ { "id": "A0A9J7JPC3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPC3" } ] }, { "name": "Gpr39", "type": "synonym", "evidence": [ { "id": "XP_027273575", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273575" } ] } ], "protein_names": [ { "name": "G-protein coupled receptor 39", "type": "synonym", "evidence": [ { "id": "XP_027273575", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273575" }, { "id": "A0A9J7JPC3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPC3/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027273575", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273575" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JPC3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPC3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Gpr39", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPC3", "locus": {} } ], "crossref": [ { "id": "A0A9J7JPC3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JPC3", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15135", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15135", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100759577", "url": "https://www.ncbi.nlm.nih.gov/gene/100759577", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052676", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052676", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759577", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759577", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JPC3", "url": "https://www.orthodb.org/?gene=A0A9J7JPC3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46752", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46752", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46752:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46752:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00001", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00001", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027273575", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273575", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JPC3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPC3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JPC3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPC3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASSSISGNVCSRVIDHSHVPEFEVATWIKITLILVYLVIFVVGILGNSVTIRVTQVLQKKGYLQKEVTDHMISLACSDILVFLIGMPMEFYSIIWNPLTTPSYALSCKLHTFLFETCSYATLLHVLTLSFERYIAICHPFRYKAVSGPCQVKLLIGFVWVTSALVALPLLFAMGIEYPLVSVPRHRGLNCNLSRTRHHEQPDTSNMSICTNLSSRWTVFQSSIFGAFAVYLVVLVSVAFMCWNMMKVLMRSKRGTLAGTGPQLQLRKSESEESRTARRQTIIFLRLIVVTLAVCWMPNQVRRIMAAATPKHDWTKSYFKAYMILLPFSDTFFYLSSVVNPLLYNVSSQQFRKVFWQVLCCRLTLQHVNHEKRLRAQFSSTKDSTRSVRSPLIFLGARRNSSSRRTNKVFLSTFQAEARPGEAKPQSMSPESPQTDSETKPADSITENGLQEQEV", "length": 455, "header": "tr|A0A9J7JPC3-1|A0A9J7JPC3_CRIGR Isoform 1 of G-protein coupled receptor 39 OS=Cricetulus griseus OX=10029 GN=Gpr39 PE=3 SV=1 CANONICAL=A0A9J7JPC3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JPC3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPC3/entry", "sequence": { "sequence": "MASSSISGNVCSRVIDHSHVPEFEVATWIKITLILVYLVIFVVGILGNSVTIRVTQVLQKKGYLQKEVTDHMISLACSDILVFLIGMPMEFYSIIWNPLTTPSYALSCKLHTFLFETCSYATLLHVLTLSFERYIAICHPFRYKAVSGPCQVKLLIGFVWVTSALVALPLLFAMGIEYPLVSVPRHRGLNCNLSRTRHHEQPDTSNMSICTNLSSRWTVFQSSIFGAFAVYLVVLVSVAFMCWNMMKVLMRSKRGTLAGTGPQLQLRKSESEESRTARRQTIIFLRLIVVTLAVCWMPNQVRRIMAAATPKHDWTKSYFKAYMILLPFSDTFFYLSSVVNPLLYNVSSQQFRKVFWQVLCCRLTLQHVNHEKRLRAQFSSTKDSTRSVRSPLIFLGARRNSSSRRTNKVFLSTFQAEARPGEAKPQSMSPESPQTDSETKPADSITENGLQEQEV", "length": 455, "header": "tr|A0A9J7JPC3-1|A0A9J7JPC3_CRIGR Isoform 1 of G-protein coupled receptor 39 OS=Cricetulus griseus OX=10029 GN=Gpr39 PE=3 SV=1 CANONICAL=A0A9J7JPC3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027273864", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273864" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JPH9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPH9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "C1galt1c1l", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPH9", "locus": {} } ], "crossref": [ { "id": "107978234", "url": "https://www.ncbi.nlm.nih.gov/gene/107978234", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:107978234", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:107978234", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JPH9", "url": "https://www.orthodb.org/?gene=A0A9J7JPH9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "XP_027273864", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273864", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JPH9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPH9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JPH9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPH9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRDDKGVQIRKVYTFVFQKNVNYNSYFLACPATLSLKIXNIFLLTRDTSQPFYVGYIIPGGLQXVTVEGGIVLSRESAKRLKGLLGDHTECKDQDVIWNLSLDKQLVVCLKCVGVVGXDAEDYEGRNVFNAXPIEYLIRAAMPNNLHQVIKGCCSDIAIMFHGLTSPVRVMMACGHCFMLFWAFFCLQTIQKIRLVSNTTVLLKDLLKCGKSDVRWTT", "length": 218, "header": "tr|A0A9J7JPH9-1|A0A9J7JPH9_CRIGR Isoform 1 of LOW QUALITY PROTEIN: C1GALT1-specific chaperone 1-like protein OS=Cricetulus griseus OX=10029 GN=C1galt1c1l PE=4 SV=1 CANONICAL=A0A9J7JPH9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JPH9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPH9/entry", "sequence": { "sequence": "MRDDKGVQIRKVYTFVFQKNVNYNSYFLACPATLSLKIXNIFLLTRDTSQPFYVGYIIPGGLQXVTVEGGIVLSRESAKRLKGLLGDHTECKDQDVIWNLSLDKQLVVCLKCVGVVGXDAEDYEGRNVFNAXPIEYLIRAAMPNNLHQVIKGCCSDIAIMFHGLTSPVRVMMACGHCFMLFWAFFCLQTIQKIRLVSNTTVLLKDLLKCGKSDVRWTT", "length": 218, "header": "tr|A0A9J7JPH9-1|A0A9J7JPH9_CRIGR Isoform 1 of LOW QUALITY PROTEIN: C1GALT1-specific chaperone 1-like protein OS=Cricetulus griseus OX=10029 GN=C1galt1c1l PE=4 SV=1 CANONICAL=A0A9J7JPH9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JPI1-1", "uniprot_ac": "A0A9J7JPI1", "uniprot_id": "A0A9J7JPI1_CRIGR", "mass": { "chemical_mass": 45750.0, "monoisotopic_mass": 45750.0 }, "refseq": { "ac": "XP_027269586", "name": "sin3 histone deacetylase corepressor complex component SDS3 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269586" }, "gene_names": [ { "name": "Suds3", "type": "recommended", "evidence": [ { "id": "A0A9J7JPI1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPI1" } ] }, { "name": "Suds3", "type": "synonym", "evidence": [ { "id": "XP_027269586", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269586" } ] } ], "protein_names": [ { "name": "Sin3 histone deacetylase corepressor complex component SDS3 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7JPI1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPI1/entry#names_and_taxonomy" } ] }, { "name": "sin3 histone deacetylase corepressor complex component SDS3 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027269586", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269586" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 22% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027269586", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269586" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JPI1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPI1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Suds3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPI1", "locus": {} } ], "crossref": [ { "id": "A0A9J7JPI1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JPI1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100758994", "url": "https://www.ncbi.nlm.nih.gov/gene/100758994", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013907", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013907", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100758994", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758994", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JPI1", "url": "https://www.orthodb.org/?gene=A0A9J7JPI1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21964", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21964", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08598", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08598", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027269586", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269586", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JPI1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPI1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JPI1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPI1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPDFSDTSLRPSPVAGRSSILKTTMKEALLCERTWSPASHPSPRGWRDQAVSGQPPTRKWPSARGPRCPARAPGAELGTKGHRAARATSEELESAEDDERSCRGRESDEDTEDASETDLAKHDEEDYVEMKEQMYQDKLASLKRQLQQLQEGTLQEYQKRMKKLDQQYRERIRNAELFLQLETEQVERNYIKEKKAAVKEFEDKKVELKENLIAELEEKKKMIENEKLTMELTGDSMEVKPIMTRKLRRRPNDPVPIPDKRRKPAPAQLNYLLTDEQIMEDLRTLNKLKSPKRPASPSSPEHLPATPAESPAQRFEARIEDGKLYYDKRWYHKSQAIYLESKDNQKLSCVISSVGANEIWVRKTSDSTKMRIYLGQLQRGLFVIRRRKFLTYRD", "length": 394, "header": "tr|A0A9J7JPI1-1|A0A9J7JPI1_CRIGR Isoform 1 of Sin3 histone deacetylase corepressor complex component SDS3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Suds3 PE=4 SV=1 CANONICAL=A0A9J7JPI1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JPI1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPI1/entry", "sequence": { "sequence": "MPDFSDTSLRPSPVAGRSSILKTTMKEALLCERTWSPASHPSPRGWRDQAVSGQPPTRKWPSARGPRCPARAPGAELGTKGHRAARATSEELESAEDDERSCRGRESDEDTEDASETDLAKHDEEDYVEMKEQMYQDKLASLKRQLQQLQEGTLQEYQKRMKKLDQQYRERIRNAELFLQLETEQVERNYIKEKKAAVKEFEDKKVELKENLIAELEEKKKMIENEKLTMELTGDSMEVKPIMTRKLRRRPNDPVPIPDKRRKPAPAQLNYLLTDEQIMEDLRTLNKLKSPKRPASPSSPEHLPATPAESPAQRFEARIEDGKLYYDKRWYHKSQAIYLESKDNQKLSCVISSVGANEIWVRKTSDSTKMRIYLGQLQRGLFVIRRRKFLTYRD", "length": 394, "header": "tr|A0A9J7JPI1-1|A0A9J7JPI1_CRIGR Isoform 1 of Sin3 histone deacetylase corepressor complex component SDS3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Suds3 PE=4 SV=1 CANONICAL=A0A9J7JPI1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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CANONICAL=A0A9J7JPV8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JPV8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPV8/entry", "sequence": { "sequence": "MPNSTEWSLTESLPQAGSLSVSRMSSSSEVPKFRNMTADECFQSQSTVLQGQPFGGIPTVLVLNLILWLFVVLLYSFLRKAAWDYGRLALLIHNDSMTSLIYGEQSEKSSPSEISLEVERKDKGFCSWFFNSLTMKDRDLISKCGDDARIYIMFQYHLIIYVLILCIPSLGIILPINYIGAALDWSSHFSRTTIVNVSTESKFLWLHSLFAFLYFLVNFAFMGHHCLGFVPKKNRKITRTLMITYVPTEIQDPEIISRHFHEAYPECMVTRVHFCYDVRTLVDLDDQRRHAMRGRLYYAAKAKKSGKVMIKIHPCSRLCFCKCCTCFKEVDAEQYYSELEEQLTDEFNAELNRVRLKRLDLIFVTFQDARTVKRIQKDYKCIQCGMRPKQSSVTTIIKNYQWRVVDAPHPKDIIWKHLSIRRFQWWTRFIAINTSLFILFFFLTTPAIIINTIDMYNVTRPIENLQSPVVTQFFPSVLLWAFTVIMPFVVYFSAFLEAHWTRSSQNVIIMHKCYIFLVFMVVILPSMGLTSLNVFLRWLFDIYYLEHATIRFQCVFLPDNGAFFVNYVITAALLGTGMELMRLGSLCTYCTRLFFSRSEPQRVHIRRNQAMDFQFGREYAWMLNVFSVVMAYSITCPIIVPFGLLYLCMKHLTDRYNMYYSYAPTKLNEQIHMAAIYQAIFAPLLGLFWMLFFSILRVGAPHAITLFSLSSLIICVIIAFSGIFLGRLRIVRRYEPEEEAETVFDVEPSSTTSTPTSLLYVATVLQEPELNLTPASSPARHTYGTMNSQPEEGEEESSLRGFARELDSAQFQEGLELEGQSH", "length": 822, "header": "tr|A0A9J7JPV8-1|A0A9J7JPV8_CRIGR Isoform 1 of Calcium permeable stress-gated cation channel 1 OS=Cricetulus griseus OX=10029 GN=Tmem63c PE=3 SV=1 CANONICAL=A0A9J7JPV8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"https://www.ebi.ac.uk/QuickGO/term/GO:0005227", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JPV8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPV8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 196, "end_pos": 198, "annotation": "n_glycosylation_sequon" }, { "start_pos": 35, "end_pos": 37, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3, "end_pos": 5, "annotation": "n_glycosylation_sequon" }, { "start_pos": 433, "end_pos": 435, "annotation": "n_glycosylation_sequon" }, { "start_pos": 457, "end_pos": 459, "annotation": "n_glycosylation_sequon" }, { "start_pos": 771, "end_pos": 773, "annotation": "n_glycosylation_sequon" }, { "start_pos": 94, "end_pos": 96, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "29671", "name": "", "equation": "Ca(2+)(in) = Ca(2+)(out)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [ "A0A9J7G6S5-1", "A0A9J7JGQ1-1" ], "evidence": [ { "id": "29671", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/29671" } ] } ], "reaction_participants": [], "reaction_enzymes": [ { "uniprot_ac": "A0A9J7G6S5", "gene_name": "Trpm7", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7G6S5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6S5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7G6S5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6S5" } ] } ] }, { "uniprot_ac": "A0A9J7JGQ1", "gene_name": "Trpm6", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7JGQ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGQ1" } ] }, { "ec_number": "2.7.11.1", 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"start_pos": 771, "end_pos": 773 }, { "start_pos": 94, "end_pos": 96 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JPW1-1", "uniprot_ac": "A0A9J7JPW1", "uniprot_id": "A0A9J7JPW1_CRIGR", "mass": { "chemical_mass": 41611.0, "monoisotopic_mass": 41611.0 }, "refseq": { "ac": "XP_003506722", "name": "serine protease 44-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003506722" }, "gene_names": [ { "name": "LOC100770736", "type": "recommended", "evidence": [ { "id": "A0A9J7JPW1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPW1" } ] }, { "name": "LOC100770736", "type": "synonym", "evidence": [ { "id": "XP_003506722", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003506722" } ] } ], "protein_names": [ { "name": "Serine protease 44-like", "type": "synonym", "evidence": [ { "id": "A0A9J7JPW1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPW1/entry#names_and_taxonomy" } ] }, { "name": "serine protease 44-like", "type": "synonym", "evidence": [ { "id": "XP_003506722", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003506722" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 6% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614270.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003506722", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003506722" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JPW1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPW1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100770736", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPW1", "locus": {} } ], "crossref": [ { "id": "A0A9J7JPW1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JPW1", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00190", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00190", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100770736", "url": "https://www.ncbi.nlm.nih.gov/gene/100770736", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001254", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001254", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009003", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009003", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018114", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018114", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100770736", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770736", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JPW1", "url": "https://www.orthodb.org/?gene=A0A9J7JPW1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24253", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24253", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24253:SF159", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24253:SF159", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00089", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00089", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003506722", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003506722", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JPW1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JPW1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPW1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRRLRDGGQGLRGGMAFRGPLAWFLLLQMLLGEARMIPGTLSLPPLRLEDGLDDPSASPQEKPLTGMPEISRGPQPEGSMVPLDSVAFTPSHSVSPMTLSQERFPTWIPTTTGCGHRTARVVGGQLAAERKWPWQVSLQVRNTHVCGGSLISKWWVMTAAHCVFGHLNYVVSMGIVDLWTDQAVKIPVQDIVVHRDFSLLGTMVHDIALALLAFPVNYSGYIQPVCLPRRAFMVKAGTQCWVTGWGRVLEGGSSSRKLREVDLSIIHHEECNRILKKSSGKILTVVQEGVVCGYNEEGGDTCQGDSGGPLVCEFNGSWVQVGIVSWGIGCGRVGFPGVYTDVSYHRDWIVKELSRASGWNSPGFLILSTCLVIYLGMLVAL", "length": 381, "header": "tr|A0A9J7JPW1-1|A0A9J7JPW1_CRIGR Isoform 1 of Serine protease 44-like OS=Cricetulus griseus OX=10029 GN=LOC100770736 PE=4 SV=1 CANONICAL=A0A9J7JPW1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JPW1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPW1/entry", "sequence": { "sequence": "MRRLRDGGQGLRGGMAFRGPLAWFLLLQMLLGEARMIPGTLSLPPLRLEDGLDDPSASPQEKPLTGMPEISRGPQPEGSMVPLDSVAFTPSHSVSPMTLSQERFPTWIPTTTGCGHRTARVVGGQLAAERKWPWQVSLQVRNTHVCGGSLISKWWVMTAAHCVFGHLNYVVSMGIVDLWTDQAVKIPVQDIVVHRDFSLLGTMVHDIALALLAFPVNYSGYIQPVCLPRRAFMVKAGTQCWVTGWGRVLEGGSSSRKLREVDLSIIHHEECNRILKKSSGKILTVVQEGVVCGYNEEGGDTCQGDSGGPLVCEFNGSWVQVGIVSWGIGCGRVGFPGVYTDVSYHRDWIVKELSRASGWNSPGFLILSTCLVIYLGMLVAL", "length": 381, "header": "tr|A0A9J7JPW1-1|A0A9J7JPW1_CRIGR Isoform 1 of Serine protease 44-like OS=Cricetulus griseus OX=10029 GN=LOC100770736 PE=4 SV=1 CANONICAL=A0A9J7JPW1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JPW1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPW1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 217, "end_pos": 219, "annotation": "n_glycosylation_sequon" }, { "start_pos": 315, "end_pos": 317, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JPW1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPW1" }, { "id": "PS50240", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50240" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Peptidase S1", "eco_id": "ECO_0000259", "start_pos": 121, "end_pos": 354, "start_aa": "Val", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 217, "end_pos": 219 }, { "start_pos": 315, "end_pos": 317 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JPW5-1", "uniprot_ac": "A0A9J7JPW5", "uniprot_id": "A0A9J7JPW5_CRIGR", "mass": { "chemical_mass": 13454.0, "monoisotopic_mass": 13454.0 }, "refseq": { "ac": "XP_016829766", "name": "SRA stem-loop-interacting RNA-binding protein, mitochondrial isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016829766" }, "gene_names": [ { "name": "Slirp", "type": "recommended", "evidence": [ { "id": "A0A9J7JPW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPW5" } ] }, { "name": "Slirp", "type": "synonym", "evidence": [ { "id": "XP_016829766", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016829766" } ] } ], "protein_names": [ { "name": "SRA stem-loop-interacting RNA-binding protein, mitochondrial isoform X1", "type": "synonym", "evidence": [ { "id": "XP_016829766", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016829766" }, { "id": "A0A9J7JPW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPW5/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613749.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016829766", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016829766" } ] }, { "annotation": "RNA-binding protein that acts as a nuclear receptor corepressor. Probably acts by binding the SRA RNA, and repressing the SRA-mediated nuclear receptor coactivation. Binds the STR7 loop of SRA RNA. Also able to repress glucocorticoid (GR), androgen (AR), thyroid (TR) and VDR-mediated transactivation.", "evidence": [ { "database": "UniProtKB", "id": "A0A3L7HJ69", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HJ69#function" }, { "database": "UniProtKB", "id": "ARBA00057077", "url": "https://www.uniprot.org/uniprotkb/ARBA00057077#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JPW5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPW5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Slirp", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPW5", "locus": {} } ], "crossref": [ { "id": "A0A9J7JPW5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JPW5", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd12242", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12242", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100759888", "url": "https://www.ncbi.nlm.nih.gov/gene/100759888", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034152", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034152", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052462", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052462", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759888", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759888", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GFVMFSQ", "url": "https://omabrowser.org/oma/group/GFVMFSQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A3L7HJ69", "url": "https://www.orthodb.org/?gene=A0A3L7HJ69", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JPW5", "url": "https://www.orthodb.org/?gene=A0A9J7JPW5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48027", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48027", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016829766", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016829766", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A3L7HJ69", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HJ69", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A3L7HJ69-1", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HJ69-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JPW5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPW5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JPW5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPW5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAASAVGRAMALSTRGSQHVAFVRRIPWTAATSELRKHFAQFGNIKRCNVPFDRETGFHRGMGWVQFSSEEELQNALQQENHIIDGVKCFFPPQMDVKAWKERILQRAQTSDEDRDF", "length": 117, "header": "tr|A0A9J7JPW5-1|A0A9J7JPW5_CRIGR Isoform 1 of SRA stem-loop-interacting RNA-binding protein, mitochondrial isoform X1 OS=Cricetulus griseus OX=10029 GN=Slirp PE=4 SV=1 CANONICAL=A0A9J7JPW5-1" }, "isoforms": [ { "isoform_ac": "A0A3L7HJ69-1", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HJ69/entry", "sequence": { "sequence": "MAASAVGRAMALSTRGSQHVAFVRRIPWTAATSELRKHFAQFGNIKRCNVPFDRETGFHRGMGWVQFSSEEELQNALQQENHIIDGVKMDVKAWKERILQRAQTSDEDRDF", "length": 111, "header": "tr|A0A3L7HJ69-1|A0A3L7HJ69_CRIGR Computationally mapped isoform of SRA stem-loop-interacting RNA-binding protein, mitochondrial OS=Cricetulus griseus OX=10029 GN=Slirp PE=4 SV=1 CANONICAL=A0A9J7JPW5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JPW5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPW5/entry", "sequence": { "sequence": "MAASAVGRAMALSTRGSQHVAFVRRIPWTAATSELRKHFAQFGNIKRCNVPFDRETGFHRGMGWVQFSSEEELQNALQQENHIIDGVKCFFPPQMDVKAWKERILQRAQTSDEDRDF", "length": 117, "header": "tr|A0A9J7JPW5-1|A0A9J7JPW5_CRIGR Isoform 1 of SRA stem-loop-interacting RNA-binding protein, mitochondrial isoform X1 OS=Cricetulus griseus OX=10029 GN=Slirp PE=4 SV=1 CANONICAL=A0A9J7JPW5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JPW5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPW5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JPW5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPW5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100759888", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759888", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5NYU5-1", "protein_name": "SRA stem-loop interacting RNA binding protein", "gene_name": "SLIRP", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAAARAAVRRSRRIFDIFVAEVPWTVSSKELKEYFSQFGSVQRCQLPFDKDTGFHKRYCWIKFSSPEEVQNVLQKDSHILEGAKLSLRPQQGRKYFNHRENQRE", "length": 104 }, "evidence": [ { "id": "A0A9J7JPW5", "url": "https://omabrowser.org/oma/group/A0A9J7JPW5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q86I71-1", "protein_name": "RRM domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSLNKIFVTRLPWSVCKEALKNHFSQFGNIKDCYVVLDRVTKRSKGFGFVQFESKESVQNAINSDNEINGRKLVVNEALAKDFKENTPKQE", "length": 91 }, "evidence": [ { "id": "A0A9J7JPW5", "url": "https://omabrowser.org/oma/group/A0A9J7JPW5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9D8T7-1", "protein_name": "SRA stem-loop-interacting RNA-binding protein, mitochondrial", "gene_name": "Slirp", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAASAIKGLSALRSSTGRPIAFVRKIPWTAAASELREHFAQFGHVRRCTVPFDKETGFHRGMGWVQFSSQEELQNALQQEHHIIDGVKIHVQAQRAKALHGAQTSDEERFLR", "length": 112 }, "evidence": [ { "id": "A0A9J7JPW5", "url": "https://omabrowser.org/oma/group/A0A9J7JPW5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { 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"name": "LOC100770839", "type": "recommended", "evidence": [ { "id": "A0A9J7JPW9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPW9" } ] }, { "name": "LOC100770839", "type": "synonym", "evidence": [ { "id": "XP_027269194", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269194" } ] } ], "protein_names": [ { "name": "Vomeronasal type-2 receptor 116 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7JPW9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPW9/entry#names_and_taxonomy" } ] }, { "name": "vomeronasal type-2 receptor 116 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027269194", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269194" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 7% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027269194", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027269194" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JPW9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPW9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100770839", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPW9", "locus": {} } ], "crossref": [ { "id": "A0A9J7JPW9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JPW9", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd06365", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06365", "database": "CDD", "categories": [ "Protein 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"tr|A0A9J7JPW9-1|A0A9J7JPW9_CRIGR Isoform 1 of Vomeronasal type-2 receptor 116 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100770839 PE=3 SV=1 CANONICAL=A0A9J7JPW9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JPW9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPW9/entry", "sequence": { "sequence": 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This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027270011", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027270011" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JQG1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQG1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Bicdl1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQG1", "locus": {} } ], "crossref": [ { "id": "A0A9J7JQG1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JQG1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100759857", "url": "https://www.ncbi.nlm.nih.gov/gene/100759857", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR051149", 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"MGDTAPPQAPAGGLGGAPGAGLLGGGSVTPRVHSAIVERLRARIAVCRQHHLNCEGRYERGRAESSDRERESTMQLLSLVQHGQGARKASKHAKAAATTATTTVPPPPPAAPSVASQATATAPPPPPDYHHHHQQHRLTSNDNGGINREQQPPASTPGDQRTSALLALQGSLKRKQIINLPPANSKRPNGFVDSSFLDIKRIRVGENLSTGQGALPVNNGQSHMMPGALTMSQAPLRKTNALPPPAHSPGNTMFNMGLKEVKKEPGETLSCSKHMDDQMTQESAFTNRFGDDPGEQLMDPELQELFNELTNISVPPMSDLELENMINATIKQDDPFSIDLGQQSQQSTPRPPLPMEKIIIKSEYSPGLTQGTSGSPQLRPPSAGPAFSLANSALPTSSPISTVPQSQPQPQTASGANRALPSWQEVSHAQQLKQIAANRQQHARIQQQQQQQQQQQQQQQQQQTPPNWPALPSSSGPSPGAFVQEKIPSPSFGQQPFSPQGSPMPGVAGSSNQSKAVANYTYKASPSAQAGHLDVLLQQKPQDLSRSFINNPHPTLEPRHGNTKPLFHFNSDQANQQMPSLLPSQSKPSLLHYTQQQQQQQQQQQQQGSLAAQQQQQKQQQPQSSLVAQQQQQHQQQGSMAAQQQQPPAQPTQPLSSQPLLRSPLPLQQKIMLQKMQNQSIAGLGYQVTQQHRQDQHTVVGQNTGPSPSPNSCSNPNTASGYMNSQQSLLNQQMMGKKQPLQRPAMEPKQQLLLQQQMLSDSEKTSPQDQINRHLTRPPPDYKDQRRNSSSLQPATQYSGGSSTVNLNSNQALTNPVSTPTILAPNSSLMSTSHGMRMPLLSTAVQNMGVYGNLPCNQPGTYNVTSAMNQLTQQRNTTQLITNQNNPLMPRPSPLGANNGNNVATFGAGSVGSSQQLRPNLAHSLAGMPAQRSSTVMITSNTTATNWASQDVTAKQQEALKSTGVRFPTGTPATYTPNQSLQPGVGSQPFSQRAVAPPNQLTPTVQMRPMNQMNQTLNGQTIAPLRGLNLRPNQMSSQSLSNMNPSGTGLNQPRTGTNQPPSLTPNTFPSSNQSSRAFQGTDHGSDLAFDFLSQQTDSMGPALNSDADFIDSLLKTEPGNDDWMKDINLDEILGSNS", "length": 1137, "header": "tr|A0A9J7JQH6-1|A0A9J7JQH6_CRIGR Isoform 1 of LOW QUALITY PROTEIN: mastermind-like protein 2 OS=Cricetulus griseus OX=10029 GN=Maml2 PE=3 SV=1 CANONICAL=A0A9J7JQH6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JQH6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQH6/entry", "sequence": { "sequence": "MGDTAPPQAPAGGLGGAPGAGLLGGGSVTPRVHSAIVERLRARIAVCRQHHLNCEGRYERGRAESSDRERESTMQLLSLVQHGQGARKASKHAKAAATTATTTVPPPPPAAPSVASQATATAPPPPPDYHHHHQQHRLTSNDNGGINREQQPPASTPGDQRTSALLALQGSLKRKQIINLPPANSKRPNGFVDSSFLDIKRIRVGENLSTGQGALPVNNGQSHMMPGALTMSQAPLRKTNALPPPAHSPGNTMFNMGLKEVKKEPGETLSCSKHMDDQMTQESAFTNRFGDDPGEQLMDPELQELFNELTNISVPPMSDLELENMINATIKQDDPFSIDLGQQSQQSTPRPPLPMEKIIIKSEYSPGLTQGTSGSPQLRPPSAGPAFSLANSALPTSSPISTVPQSQPQPQTASGANRALPSWQEVSHAQQLKQIAANRQQHARIQQQQQQQQQQQQQQQQQQTPPNWPALPSSSGPSPGAFVQEKIPSPSFGQQPFSPQGSPMPGVAGSSNQSKAVANYTYKASPSAQAGHLDVLLQQKPQDLSRSFINNPHPTLEPRHGNTKPLFHFNSDQANQQMPSLLPSQSKPSLLHYTQQQQQQQQQQQQQGSLAAQQQQQKQQQPQSSLVAQQQQQHQQQGSMAAQQQQPPAQPTQPLSSQPLLRSPLPLQQKIMLQKMQNQSIAGLGYQVTQQHRQDQHTVVGQNTGPSPSPNSCSNPNTASGYMNSQQSLLNQQMMGKKQPLQRPAMEPKQQLLLQQQMLSDSEKTSPQDQINRHLTRPPPDYKDQRRNSSSLQPATQYSGGSSTVNLNSNQALTNPVSTPTILAPNSSLMSTSHGMRMPLLSTAVQNMGVYGNLPCNQPGTYNVTSAMNQLTQQRNTTQLITNQNNPLMPRPSPLGANNGNNVATFGAGSVGSSQQLRPNLAHSLAGMPAQRSSTVMITSNTTATNWASQDVTAKQQEALKSTGVRFPTGTPATYTPNQSLQPGVGSQPFSQRAVAPPNQLTPTVQMRPMNQMNQTLNGQTIAPLRGLNLRPNQMSSQSLSNMNPSGTGLNQPRTGTNQPPSLTPNTFPSSNQSSRAFQGTDHGSDLAFDFLSQQTDSMGPALNSDADFIDSLLKTEPGNDDWMKDINLDEILGSNS", "length": 1137, "header": "tr|A0A9J7JQH6-1|A0A9J7JQH6_CRIGR Isoform 1 of LOW QUALITY PROTEIN: mastermind-like protein 2 OS=Cricetulus griseus OX=10029 GN=Maml2 PE=3 SV=1 CANONICAL=A0A9J7JQH6-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 156, "start_aa": "Thr", "end_pos": 156, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr156", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JQH6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQH6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JQH6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQH6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100762611", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762611", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transcription coactivator activity", "id": "GO:0003713", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003713", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JQH6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQH6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JQH6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQH6" } ], "pmid": "" }, { "name": "positive regulation of transcription of Notch receptor target", "id": "GO:0007221", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007221", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JQH6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQH6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nuclear speck", "id": "GO:0016607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016607", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JQH6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQH6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1014, "end_pos": 1016, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1072, "end_pos": 1074, "annotation": "n_glycosylation_sequon" }, { "start_pos": 207, "end_pos": 209, "annotation": "n_glycosylation_sequon" }, { "start_pos": 311, "end_pos": 313, "annotation": "n_glycosylation_sequon" }, { "start_pos": 327, "end_pos": 329, "annotation": "n_glycosylation_sequon" }, { "start_pos": 512, "end_pos": 514, "annotation": "n_glycosylation_sequon" }, { "start_pos": 519, "end_pos": 521, "annotation": "n_glycosylation_sequon" }, { "start_pos": 678, "end_pos": 680, "annotation": "n_glycosylation_sequon" }, { "start_pos": 788, "end_pos": 790, "annotation": "n_glycosylation_sequon" }, { "start_pos": 826, "end_pos": 828, "annotation": "n_glycosylation_sequon" }, { "start_pos": 863, "end_pos": 865, "annotation": "n_glycosylation_sequon" }, { "start_pos": 876, "end_pos": 878, "annotation": "n_glycosylation_sequon" }, { "start_pos": 941, "end_pos": 943, "annotation": "n_glycosylation_sequon" }, { "start_pos": 978, "end_pos": 980, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], 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313 }, { "start_pos": 327, "end_pos": 329 }, { "start_pos": 512, "end_pos": 514 }, { "start_pos": 519, "end_pos": 521 }, { "start_pos": 678, "end_pos": 680 }, { "start_pos": 788, "end_pos": 790 }, { "start_pos": 826, "end_pos": 828 }, { "start_pos": 863, "end_pos": 865 }, { "start_pos": 876, "end_pos": 878 }, { "start_pos": 941, "end_pos": 943 }, { "start_pos": 978, "end_pos": 980 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", 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{ "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JQJ3-1", "uniprot_ac": "A0A9J7JQJ3", "uniprot_id": "A0A9J7JQJ3_CRIGR", "mass": { "chemical_mass": 28859.0, "monoisotopic_mass": 28859.0 }, "refseq": { "ac": "XP_003496068", "name": "RAD9, HUS1, RAD1-interacting nuclear orphan protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003496068" }, "gene_names": [ { "name": "Rhno1", "type": "recommended", "evidence": [ { "id": "A0A9J7JQJ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQJ3" } ] }, { "name": "Rhno1", "type": "synonym", "evidence": [ { "id": "XP_003496068", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003496068" } ] } ], "protein_names": [ { "name": "RAD9, HUS1, RAD1-interacting nuclear orphan protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003496068", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003496068" }, { "id": "A0A9J7JQJ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQJ3/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613610.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003496068", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003496068" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JQJ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQJ3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Rhno1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQJ3", "locus": {} } ], "crossref": [ { "id": "100769819", "url": "https://www.ncbi.nlm.nih.gov/gene/100769819", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029293", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029293", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769819", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769819", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JQJ3", "url": "https://www.orthodb.org/?gene=A0A9J7JQJ3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR35541", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35541", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35541:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35541:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15319", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15319", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003496068", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003496068", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H615", "url": 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"MLFIYLLMPPKKRRQRQLHKAQLLFHQQPLEGPKHHYESLQQPITHTVQVPSKPIDQGTITSWVLPQFDITAETQFPAHRKHRPRDQARHLTRRSACKFPCLTFESPPSSSSETLLISVNREEPCQSEKDTPRRPLVPLLSPQSCGDLSVHSLQSLPRVFMPPDIQTPESSVREGPISVREGPISPDQKENSLPDSILGLRTPSSPEPGPVLVKDTPEDKYGIKVTWRRRRHLFAYLKERGKLDESQFLVKI", "length": 252, "header": "tr|A0A9J7JQJ3-1|A0A9J7JQJ3_CRIGR Isoform 1 of RAD9, HUS1, RAD1-interacting nuclear orphan protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Rhno1 PE=4 SV=1 CANONICAL=A0A9J7JQJ3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H615-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H615/entry", "sequence": { "sequence": "MDPILRPEPGALQQQHSARIPPCNGGGGGGVGCVCRPRGQACSRGFPGAGRTRREDRGPRLRPSPRPSPTPPPRAPQPRQSRLRALPRPGPGPSSCTALTSHAAAAPRGAGAGPGGGSRRDVRGGTPGPGGAEARPGGWVPQRRFQLFRCLKLAPAERCGHVTERRQSAPACLRVPAPNARRPEERRPRPGGRCWGF", "length": 197, "header": "tr|A0A9J7H615-1|A0A9J7H615_CRIGR Computationally mapped isoform of RAD9, HUS1, RAD1-interacting nuclear orphan protein 1 isoform X3 OS=Cricetulus griseus OX=10029 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8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614316.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016833371", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016833371" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JQK4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQK4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100774689", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQK4", "locus": {} } ], "crossref": [ { "id": "A0A9J7JQK4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JQK4", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15234", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15234", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100774689", "url": "https://www.ncbi.nlm.nih.gov/gene/100774689", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100774689", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774689", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JQK4", "url": "https://www.orthodb.org/?gene=A0A9J7JQK4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48001", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48001", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016833371", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016833371", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JQK4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQK4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JQK4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQK4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNLSEDPDLQPILFGLFLSMYLITVLGNLLIILAVTHDSHLHTPMYFFLANLSFVDICFISTTVPKMTLNIQTHSEVITCVGCLTQMSLFILFLVMDDMLLTAMAYDRYVAICHPLHYPVIMNPCFCVFLVLASYFISFIGSQMHNLIVLQCTYFNSIEISNFFCHPSQVFNISCSDSFTKNIVTYFVGAIFGFLPVSGIVFSYCKIFSSIMKMSSSGGQYKVFSTCGSHLSVVCLFYGTGIWEYLGSAVSHSPSNGIMATLMYTVITPMLNPFIYSLRNRDFVNALKRVYRQTV", "length": 295, "header": "tr|A0A9J7JQK4-1|A0A9J7JQK4_CRIGR Isoform 1 of Olfactory receptor 18-like OS=Cricetulus griseus OX=10029 GN=LOC100774689 PE=3 SV=1 CANONICAL=A0A9J7JQK4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JQK4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQK4/entry", "sequence": { "sequence": "MNLSEDPDLQPILFGLFLSMYLITVLGNLLIILAVTHDSHLHTPMYFFLANLSFVDICFISTTVPKMTLNIQTHSEVITCVGCLTQMSLFILFLVMDDMLLTAMAYDRYVAICHPLHYPVIMNPCFCVFLVLASYFISFIGSQMHNLIVLQCTYFNSIEISNFFCHPSQVFNISCSDSFTKNIVTYFVGAIFGFLPVSGIVFSYCKIFSSIMKMSSSGGQYKVFSTCGSHLSVVCLFYGTGIWEYLGSAVSHSPSNGIMATLMYTVITPMLNPFIYSLRNRDFVNALKRVYRQTV", "length": 295, "header": "tr|A0A9J7JQK4-1|A0A9J7JQK4_CRIGR Isoform 1 of Olfactory receptor 18-like OS=Cricetulus griseus OX=10029 GN=LOC100774689 PE=3 SV=1 CANONICAL=A0A9J7JQK4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_003613617.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007646710", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007646710" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JQM3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQM3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Zcwpw2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQM3", "locus": {} } ], "crossref": [ { "id": "A0A9J7JQM3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JQM3", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd20146", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20146", "database": "CDD", "categories": [ "Protein Classification" ] 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"MDPALKSSEFVSRVWVQCENESCLKWRLLSPEAAAKVEHSEPWYCFMNADSSHNSCSVSEEAFPAESQFLESGYKIVYSQLPLGSLVLVELQNWPSWPGILCPDPFKGKYVTYDQDGNVEKYHIEFLGDPHSRAWINAKFVGHYSLSLKTAECTSKKRWYRSALEEADQLSRNSPEQRLEVCYLSNRDRTKAGARAAVGAKKRMQVSKNNTEKKKPKVRKRKRNAALKCSVENVCSDEALSKENMDVSFDQCSSDSLAGCLNSSGKAKRIPCPSPNFGLSLCHFSVMNHDHA", "length": 292, "header": "tr|A0A9J7K899-1|A0A9J7K899_CRIGR Computationally mapped isoform of Zinc finger CW-type PWWP domain protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Zcwpw2 PE=4 SV=1 CANONICAL=A0A9J7JQM3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JQM3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQM3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JQM3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQM3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100753274", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753274", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2K432-1", "protein_name": "Zinc finger CW-type and PWWP domain containing 2", "gene_name": "Zcwpw2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": 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Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027271340", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271340" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JQS4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQS4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100763889", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQS4", "locus": {} } ], "crossref": [ { "id": "A0A9J7JQS4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JQS4", "database": "AlphaFoldDB", "categories": [] }, { "id": "100763889", "url": "https://www.ncbi.nlm.nih.gov/gene/100763889", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR039938", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039938", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763889", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763889", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JQS4", "url": "https://www.orthodb.org/?gene=A0A9J7JQS4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14947", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14947", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14947:SF26", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14947:SF26", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_027271340", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027271340", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JQS4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQS4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JQS4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQS4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNVISVVKLLLVKVVSKYIKERILGRNPMNVISVVKPLHIKVISKYIKKYILETNPMNVMNVVKPLYVKAVSEYIKEHTLEKNPMIVINVAKHLHVTVIFRCIKEHIMERNPMNVINVVKPLYVKAVSKYIKEYILERNPMNVINVVKALHVTVNFKIIQEHILERNLMNVFNVVKLLHATVIFKCIKEHILEKNPMNVINVVKRLHNTIIFKGIKEYILERNPMNVINVVKPLHLKVISKYIKEHIRERNPMNVINVVKRLHIRVIIEVMKEYILERNPMNVINVVKRLHINVIIEGMKEHILERNPMNVINVVKPLHVSVVSKYINEHILERNPMNVINVARHLHVKVVYKYIEEHILERNLMNVTSVVKPFHNSVVLKYIKEHILERNPTYVIIVIYPLYQKPSKI", "length": 409, "header": "tr|A0A9J7JQS4-1|A0A9J7JQS4_CRIGR Isoform 1 of Zinc finger protein 844 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100763889 PE=4 SV=1 CANONICAL=A0A9J7JQS4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JQS4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQS4/entry", "sequence": { "sequence": "MNVISVVKLLLVKVVSKYIKERILGRNPMNVISVVKPLHIKVISKYIKKYILETNPMNVMNVVKPLYVKAVSEYIKEHTLEKNPMIVINVAKHLHVTVIFRCIKEHIMERNPMNVINVVKPLYVKAVSKYIKEYILERNPMNVINVVKALHVTVNFKIIQEHILERNLMNVFNVVKLLHATVIFKCIKEHILEKNPMNVINVVKRLHNTIIFKGIKEYILERNPMNVINVVKPLHLKVISKYIKEHIRERNPMNVINVVKRLHIRVIIEVMKEYILERNPMNVINVVKRLHINVIIEGMKEHILERNPMNVINVVKPLHVSVVSKYINEHILERNPMNVINVARHLHVKVVYKYIEEHILERNLMNVTSVVKPFHNSVVLKYIKEHILERNPTYVIIVIYPLYQKPSKI", "length": 409, "header": "tr|A0A9J7JQS4-1|A0A9J7JQS4_CRIGR Isoform 1 of Zinc finger protein 844 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100763889 PE=4 SV=1 CANONICAL=A0A9J7JQS4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027273254", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273254" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JQX9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQX9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH1orf53", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQX9", "locus": {} } ], "crossref": [ { "id": "A0A9J7JQX9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JQX9", "database": "AlphaFoldDB", "categories": [] }, { "id": "113835903", "url": "https://www.ncbi.nlm.nih.gov/gene/113835903", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR040807", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040807", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113835903", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113835903", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JQX9", "url": "https://www.orthodb.org/?gene=A0A9J7JQX9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21037", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21037", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21037:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21037:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF17653", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17653", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027273254", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027273254", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JQX9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQX9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JQX9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQX9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAACGIRSLARAALGRPPFWAEGFRQPLSSTLCSDSEGACGGSAPDSRGTPEGEPRHPASQELTAAERHIAGLHRAACAAGQLSYVDPATGYVVLTRLAHLQRGACCGSACRHCPYGQVNVKDPSKKKQFNSYFYV", "length": 136, "header": "tr|A0A9J7JQX9-1|A0A9J7JQX9_CRIGR Isoform 1 of Uncharacterized protein C1orf53 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=CUNH1orf53 PE=4 SV=1 CANONICAL=A0A9J7JQX9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JQX9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQX9/entry", "sequence": { "sequence": "MAACGIRSLARAALGRPPFWAEGFRQPLSSTLCSDSEGACGGSAPDSRGTPEGEPRHPASQELTAAERHIAGLHRAACAAGQLSYVDPATGYVVLTRLAHLQRGACCGSACRHCPYGQVNVKDPSKKKQFNSYFYV", "length": 136, "header": "tr|A0A9J7JQX9-1|A0A9J7JQX9_CRIGR Isoform 1 of Uncharacterized protein C1orf53 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=CUNH1orf53 PE=4 SV=1 CANONICAL=A0A9J7JQX9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. 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"total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JRR2-1", "uniprot_ac": "A0A9J7JRR2", "uniprot_id": "A0A9J7JRR2_CRIGR", "mass": { "chemical_mass": 45044.0, "monoisotopic_mass": 45044.0 }, "refseq": { "ac": "XP_003495049", "name": "LOW QUALITY PROTEIN: spermatogenesis-associated protein 17", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495049" }, "gene_names": [ { "name": "Spata17", "type": "recommended", "evidence": [ { "id": "A0A9J7JRR2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRR2" } ] }, { "name": "Spata17", "type": "synonym", "evidence": [ { "id": "XP_003495049", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495049" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: spermatogenesis-associated protein 17", "type": "synonym", "evidence": [ { "id": "XP_003495049", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495049" }, { "id": "A0A9J7JRR2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRR2/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613581.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 27, 2016 this sequence version replaced XP_003495049.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003495049", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495049" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JRR2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRR2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Spata17", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRR2", "locus": {} } ], "crossref": [ { "id": "100759946", "url": "https://www.ncbi.nlm.nih.gov/gene/100759946", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051185", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051185", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759946", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759946", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JRR2", "url": "https://www.orthodb.org/?gene=A0A9J7JRR2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22706", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22706", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22706:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22706:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00612", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00612", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003495049", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495049", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JRR2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRR2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JRR2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRR2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "METPSNNFSKPLAXEAMATLAKLQARSSFLETQYYFRNRAVDTFRKKENDAAVIIQSWFRGCQVRAYIRHLNRVVTVIQKWWRSFLGRKQYRLIVEAAYFNMKMKLYNEMAVKIQRRWRGYRIRKYCFNYYYLKEYLKAVSETNDAIREALEEFAEMKETEERKARLEKEEKLRDQQARKMHYLLSTNQLPGIYNSPFRKQPDPWELRLQKAKPLGHQPATMVKTRSRCSLANWLECTSARSFPPSASLPPIDRKRCQGPFRDMNEVLHQRYKPLEPTLRVAEPINHLELAREVVKQEERMLNVNKMFLPFSSHHKKEKYIPMIHSSSKYNGDSYGHKHFRSQDPKKWISNKDFQTVLPSFDLFSKYGKLYSKAGQIV", "length": 378, "header": "tr|A0A9J7JRR2-1|A0A9J7JRR2_CRIGR Isoform 1 of LOW QUALITY PROTEIN: spermatogenesis-associated protein 17 OS=Cricetulus griseus OX=10029 GN=Spata17 PE=4 SV=1 CANONICAL=A0A9J7JRR2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JRR2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRR2/entry", "sequence": { "sequence": "METPSNNFSKPLAXEAMATLAKLQARSSFLETQYYFRNRAVDTFRKKENDAAVIIQSWFRGCQVRAYIRHLNRVVTVIQKWWRSFLGRKQYRLIVEAAYFNMKMKLYNEMAVKIQRRWRGYRIRKYCFNYYYLKEYLKAVSETNDAIREALEEFAEMKETEERKARLEKEEKLRDQQARKMHYLLSTNQLPGIYNSPFRKQPDPWELRLQKAKPLGHQPATMVKTRSRCSLANWLECTSARSFPPSASLPPIDRKRCQGPFRDMNEVLHQRYKPLEPTLRVAEPINHLELAREVVKQEERMLNVNKMFLPFSSHHKKEKYIPMIHSSSKYNGDSYGHKHFRSQDPKKWISNKDFQTVLPSFDLFSKYGKLYSKAGQIV", "length": 378, "header": "tr|A0A9J7JRR2-1|A0A9J7JRR2_CRIGR Isoform 1 of LOW QUALITY PROTEIN: spermatogenesis-associated protein 17 OS=Cricetulus griseus OX=10029 GN=Spata17 PE=4 SV=1 CANONICAL=A0A9J7JRR2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JRR2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRR2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JRR2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRR2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100759946", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759946", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "mitotic cell cycle", "id": "GO:0000278", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000278", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JRR2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRR2" } ], "pmid": "" }, { "name": "spindle organization", "id": "GO:0007051", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007051", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JRR2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRR2" } ], "pmid": "" }, { "name": "establishment of meiotic spindle localization", "id": "GO:0051295", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051295", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JRR2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRR2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "spindle pole", "id": "GO:0000922", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000922", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JRR2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRR2" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JRR2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRR2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "calmodulin binding", "id": "GO:0005516", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005516", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JRR2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRR2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 7, "end_pos": 9, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 7, "end_pos": 9 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { 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"A0A9J7JRR3", "uniprot_id": "A0A9J7JRR3_CRIGR", "mass": { "chemical_mass": 94498.0, "monoisotopic_mass": 94498.0 }, "refseq": { "ac": "XP_027286498", "name": "serine/threonine-protein phosphatase 6 regulatory subunit 1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286498" }, "gene_names": [ { "name": "Ppp6r1", "type": "recommended", "evidence": [ { "id": "A0A9J7JRR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRR3" } ] }, { "name": "Ppp6r1", "type": "synonym", "evidence": [ { "id": "XP_027286498", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286498" } ] } ], "protein_names": [ { "name": "Serine/threonine-protein phosphatase 6 regulatory subunit 1 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7JRR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRR3/entry#names_and_taxonomy" } ] }, { "name": "serine/threonine-protein phosphatase 6 regulatory subunit 1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027286498", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286498" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027286498", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286498" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JRR3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRR3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ppp6r1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRR3", "locus": {} } ], "crossref": [ { "id": "100772081", "url": "https://www.ncbi.nlm.nih.gov/gene/100772081", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007587", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007587", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772081", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772081", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JRR3", "url": "https://www.orthodb.org/?gene=A0A9J7JRR3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12634", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12634", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12634:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12634:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04499", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04499", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027286498", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286498", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JRR3", "url": 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:: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 3% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613955.1) annotated using gene prediction method: Gnomon. 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Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613762.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003500011", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500011" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JRW9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRW9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100766583", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRW9", "locus": {} } ], "crossref": [ { "id": "A0A9J7JRW9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JRW9", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00042", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00042", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100766583", "url": "https://www.ncbi.nlm.nih.gov/gene/100766583", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000010", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000010", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046350", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046350", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100766583", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766583", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JRW9", "url": "https://www.orthodb.org/?gene=A0A9J7JRW9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46186", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46186", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46186:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46186:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00031", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00031", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003500011", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500011", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JRW9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRW9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JRW9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRW9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASPLRTPLLLLAILAVASAANTKQGPRLLGGLQEAKVEEEGVKQALDFAISEYNKGSNDAYHSRALEVVRARKQMVAGINYYLDVMVGRTTCTKSQPNLTDCPFHDQPHLMRKTLCSFQIYTVPWQGTQTLTKSSCKSA", "length": 140, "header": "tr|A0A9J7JRW9-1|A0A9J7JRW9_CRIGR Isoform 1 of Cystatin-C OS=Cricetulus griseus OX=10029 GN=LOC100766583 PE=3 SV=1 CANONICAL=A0A9J7JRW9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JRW9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRW9/entry", "sequence": { "sequence": "MASPLRTPLLLLAILAVASAANTKQGPRLLGGLQEAKVEEEGVKQALDFAISEYNKGSNDAYHSRALEVVRARKQMVAGINYYLDVMVGRTTCTKSQPNLTDCPFHDQPHLMRKTLCSFQIYTVPWQGTQTLTKSSCKSA", "length": 140, "header": "tr|A0A9J7JRW9-1|A0A9J7JRW9_CRIGR Isoform 1 of Cystatin-C OS=Cricetulus griseus OX=10029 GN=LOC100766583 PE=3 SV=1 CANONICAL=A0A9J7JRW9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 7% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. 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This record is derived from a genomic sequence (NW_003615233.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_003511850.2. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003511850", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003511850" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JS94", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JS94" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100768181", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JS94", "locus": {} } ], "crossref": [ { "id": "A0A9J7JS94", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JS94", "database": "AlphaFoldDB", "categories": [] }, { "id": "100768181", "url": "https://www.ncbi.nlm.nih.gov/gene/100768181", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027966", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027966", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768181", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768181", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JS94", "url": "https://www.orthodb.org/?gene=A0A9J7JS94", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31036", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31036", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31036:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31036:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15124", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15124", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003511850", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003511850", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JS94", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JS94", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JS94-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JS94-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTGYQLWSPWTPLDENLRWLRHTTPTLCSKHPFRGSPLFPKSPSDLEVQQCFQEVAVVLDSPPLENGESRDSAGQASEPETTDKKYGLVRKPEPIRLIGVDSVFGRDITVQPPKWTGTFRVSDTSAFSKIISKEQKWPTGLKDPQNEMTVAMCKQMLRSILLLYALYKKCTFVLQHSQ", "length": 178, "header": "tr|A0A9J7JS94-1|A0A9J7JS94_CRIGR Isoform 1 of FANCD2 opposite strand protein OS=Cricetulus griseus OX=10029 GN=LOC100768181 PE=4 SV=1 CANONICAL=A0A9J7JS94-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JS94-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JS94/entry", "sequence": { "sequence": "MTGYQLWSPWTPLDENLRWLRHTTPTLCSKHPFRGSPLFPKSPSDLEVQQCFQEVAVVLDSPPLENGESRDSAGQASEPETTDKKYGLVRKPEPIRLIGVDSVFGRDITVQPPKWTGTFRVSDTSAFSKIISKEQKWPTGLKDPQNEMTVAMCKQMLRSILLLYALYKKCTFVLQHSQ", "length": 178, "header": "tr|A0A9J7JS94-1|A0A9J7JS94_CRIGR Isoform 1 of FANCD2 opposite strand protein OS=Cricetulus griseus OX=10029 GN=LOC100768181 PE=4 SV=1 CANONICAL=A0A9J7JS94-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JS94", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JS94" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JS94", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JS94" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100768181", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768181", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JS96-1", "uniprot_ac": "A0A9J7JS96", "uniprot_id": "A0A9J7JS96_CRIGR", "mass": { "chemical_mass": 24560.0, "monoisotopic_mass": 24560.0 }, "refseq": { "ac": "XP_027272844", "name": "odorant-binding protein-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272844" }, "gene_names": [ { "name": "LOC113835879", "type": "recommended", "evidence": [ { "id": "A0A9J7JS96", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JS96" } ] }, { "name": "LOC113835879", "type": "synonym", "evidence": [ { "id": "XP_027272844", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272844" } ] } ], "protein_names": [ { "name": "Odorant-binding protein-like", "type": "synonym", "evidence": [ { "id": "A0A9J7JS96", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JS96/entry#names_and_taxonomy" } ] }, { "name": "odorant-binding protein-like", "type": "synonym", "evidence": [ { "id": "XP_027272844", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272844" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 42% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276919.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027272844", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272844" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JS96", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JS96" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113835879", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JS96", "locus": {} } ], "crossref": [ { "id": "A0A9J7JS96", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JS96", "database": "AlphaFoldDB", "categories": [] }, { "id": "113835879", "url": "https://www.ncbi.nlm.nih.gov/gene/113835879", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": 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"PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11430:SF65", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11430:SF65", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00061", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00061", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027272844", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272844", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JS96", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JS96", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JS96-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JS96-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAKILLLALAIGLAQALNELEGDWVSIAIAADNVEKIEKQGTMRLYARQITCHEECDKLEITFYVNLNGQCSETTVIGYKQEDGNYRTQYEGENIFKPVVITKDFLIFSIKNVDRDGMETHLLFSLATDFPAARRAMVELRPMSIQAVAAVSWPTSSGSMPPCVGICGRLDKMAERVADILRLLGVENEACWLLKQLLRYMEQRRIGPEALGDCLNQLE", "length": 219, "header": "tr|A0A9J7JS96-1|A0A9J7JS96_CRIGR Isoform 1 of Odorant-binding protein-like OS=Cricetulus griseus OX=10029 GN=LOC113835879 PE=3 SV=1 CANONICAL=A0A9J7JS96-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JS96-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JS96/entry", "sequence": { "sequence": "MAKILLLALAIGLAQALNELEGDWVSIAIAADNVEKIEKQGTMRLYARQITCHEECDKLEITFYVNLNGQCSETTVIGYKQEDGNYRTQYEGENIFKPVVITKDFLIFSIKNVDRDGMETHLLFSLATDFPAARRAMVELRPMSIQAVAAVSWPTSSGSMPPCVGICGRLDKMAERVADILRLLGVENEACWLLKQLLRYMEQRRIGPEALGDCLNQLE", "length": 219, "header": "tr|A0A9J7JS96-1|A0A9J7JS96_CRIGR Isoform 1 of Odorant-binding protein-like OS=Cricetulus griseus OX=10029 GN=LOC113835879 PE=3 SV=1 CANONICAL=A0A9J7JS96-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [], "pathway": [ { "id": "cge:113835879", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113835879", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JS96", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JS96" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "small molecule binding", "id": "GO:0036094", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036094", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JS96", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JS96" } ], "pmid": "" }, { "name": "odorant binding", "id": "GO:0005549", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005549", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JS96", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JS96" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JS96", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JS96" }, { "id": "PF00061", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00061" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Lipocalin/cytosolic fatty-acid binding", "eco_id": "ECO_0000259", "start_pos": 22, "end_pos": 123, "start_aa": "Gly", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], 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Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 5% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027276693", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027276693" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JT49", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JT49" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Aven", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JT49", "locus": {} } ], "crossref": [ { "id": "A0A9J7JT49", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JT49", "database": "AlphaFoldDB", "categories": [] }, { "id": "100751273", "url": "https://www.ncbi.nlm.nih.gov/gene/100751273", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026187", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026187", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751273", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751273", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JT49", "url": "https://www.orthodb.org/?gene=A0A9J7JT49", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16524", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16524", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16524:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16524:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF28377", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28377", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027276693", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027276693", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JT49", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JT49", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JT49-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JT49-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTCLAPVPGNPKLSFGVYGYQSVLSLQITPAVPAPARPAPGSPGPVLARPLPVGPALSAAARALPRRAASCRRSAGLEAAVAAGRPGAARRGRERAGAAARAGERRLRGRRRPAGRGRGFRGGRGGGGPRGGRREPGGRGGGASTRVEDDSDSETHGEENDERGHFSRRKIVCNWDRYQDTEKELNDESGESQRGTDFSVLLSSAGDSFSQFRFAEEKEWDGETSCPKQNSALYVDSESLVRALQQLPLSVRLNVASELIQTTIPLELPQVKPRRNDDGKELGMQLRGPISELRSAAGKDSLRQSPPEGLQKAPFPPQSVADHLEDELDMLLHLDAPMTEEDRICPDQMSQDQEPDRDQQVAQEETVPEKPSMTGEKNVEPEQTSTSKNVTEEDLEDWLDSMIS", "length": 404, "header": "tr|A0A9J7JT49-1|A0A9J7JT49_CRIGR Isoform 1 of Cell death regulator Aven isoform X2 OS=Cricetulus griseus OX=10029 GN=Aven PE=4 SV=1 CANONICAL=A0A9J7JT49-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JT49-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JT49/entry", "sequence": { "sequence": "MTCLAPVPGNPKLSFGVYGYQSVLSLQITPAVPAPARPAPGSPGPVLARPLPVGPALSAAARALPRRAASCRRSAGLEAAVAAGRPGAARRGRERAGAAARAGERRLRGRRRPAGRGRGFRGGRGGGGPRGGRREPGGRGGGASTRVEDDSDSETHGEENDERGHFSRRKIVCNWDRYQDTEKELNDESGESQRGTDFSVLLSSAGDSFSQFRFAEEKEWDGETSCPKQNSALYVDSESLVRALQQLPLSVRLNVASELIQTTIPLELPQVKPRRNDDGKELGMQLRGPISELRSAAGKDSLRQSPPEGLQKAPFPPQSVADHLEDELDMLLHLDAPMTEEDRICPDQMSQDQEPDRDQQVAQEETVPEKPSMTGEKNVEPEQTSTSKNVTEEDLEDWLDSMIS", "length": 404, "header": "tr|A0A9J7JT49-1|A0A9J7JT49_CRIGR Isoform 1 of Cell death regulator Aven isoform X2 OS=Cricetulus griseus OX=10029 GN=Aven PE=4 SV=1 CANONICAL=A0A9J7JT49-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_003614609.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 18, 2018 this sequence version replaced XP_016834436.1. 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}, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"protein_names": [ { "name": "Protein sel-1 homolog 2", "type": "synonym", "evidence": [ { "id": "A0A9J7JT78", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JT78/entry#names_and_taxonomy" } ] }, { "name": "protein sel-1 homolog 2", "type": "synonym", "evidence": [ { "id": "XP_027276776", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027276776" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027276776", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027276776" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JT78", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JT78" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Sel1l2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JT78", "locus": {} } ], "crossref": [ { "id": "A0A9J7JT78", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JT78", "database": "AlphaFoldDB", "categories": [] }, { "id": "100771031", "url": "https://www.ncbi.nlm.nih.gov/gene/100771031", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006597", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006597", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050767", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050767", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100771031", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771031", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JT78", "url": "https://www.orthodb.org/?gene=A0A9J7JT78", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11102", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11102", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11102:SF53", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11102:SF53", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08238", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08238", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027276776", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027276776", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JT78", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JT78", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JT78-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JT78-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGNKMFQESKSQKQKMEAYILFARAADMGNLKAMEKMADALLFGNFGMQNITAAIQLYEFLAKEGSYKAQNALGFLSSYGIGMEYDQAKALIYYTFGSAGGSMMSQMILGYRYLSGINVLQNCEVALNHYKKVADYIADKLEKSEGIPVEKVRLTERPENLSSNSEILDWDIYQYYKFLAERGDVQIQVSLGQLHLIGRKGLDQDYYKALYYFLKAAKAGSANAMAFIGKMYLEGNTAAPQNNATAFKYFSMAASKGNAIGLHGLGLLYFHGKGVPRNYGEALKYFQKAAEKGWPNAQFQLGFMYYSGSGVWKDYKLAFKYFYLASQSGQPLAIYYLAEMYATGTGVLRSCRTAVELYKGVCELGHWAEKFLTAYFAYKDGDIDSSLIQYALLAEMGYEVAQSNSAFILESKKANILGKEKMYPMALLLWNRAAIQGNAFARVKIGDYHYYGYGTKKDYETAATHYSIAADKHHSAQAMFNLAYMYEHGLGIAKDIHLARRLYDMAAQTSPDAHIPVFFALMKLETMHFLRDVLFFNFTMRWKWLKLDSTIGPYWDLFVIAIIVAMLIFLLRNRHR", "length": 576, "header": "tr|A0A9J7JT78-1|A0A9J7JT78_CRIGR Isoform 1 of Protein sel-1 homolog 2 OS=Cricetulus griseus OX=10029 GN=Sel1l2 PE=3 SV=1 CANONICAL=A0A9J7JT78-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JT78-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JT78/entry", "sequence": { "sequence": "MGNKMFQESKSQKQKMEAYILFARAADMGNLKAMEKMADALLFGNFGMQNITAAIQLYEFLAKEGSYKAQNALGFLSSYGIGMEYDQAKALIYYTFGSAGGSMMSQMILGYRYLSGINVLQNCEVALNHYKKVADYIADKLEKSEGIPVEKVRLTERPENLSSNSEILDWDIYQYYKFLAERGDVQIQVSLGQLHLIGRKGLDQDYYKALYYFLKAAKAGSANAMAFIGKMYLEGNTAAPQNNATAFKYFSMAASKGNAIGLHGLGLLYFHGKGVPRNYGEALKYFQKAAEKGWPNAQFQLGFMYYSGSGVWKDYKLAFKYFYLASQSGQPLAIYYLAEMYATGTGVLRSCRTAVELYKGVCELGHWAEKFLTAYFAYKDGDIDSSLIQYALLAEMGYEVAQSNSAFILESKKANILGKEKMYPMALLLWNRAAIQGNAFARVKIGDYHYYGYGTKKDYETAATHYSIAADKHHSAQAMFNLAYMYEHGLGIAKDIHLARRLYDMAAQTSPDAHIPVFFALMKLETMHFLRDVLFFNFTMRWKWLKLDSTIGPYWDLFVIAIIVAMLIFLLRNRHR", "length": 576, "header": "tr|A0A9J7JT78-1|A0A9J7JT78_CRIGR Isoform 1 of Protein sel-1 homolog 2 OS=Cricetulus griseus OX=10029 GN=Sel1l2 PE=3 SV=1 CANONICAL=A0A9J7JT78-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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This record is derived from a genomic sequence (NW_023276845.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027289527.1. 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"https://www.ncbi.nlm.nih.gov/gene/113837905", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000068", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000068", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000337", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000337", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001828", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001828", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004073", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004073", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011500", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011500", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017978", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017978", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028082", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028082", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038550", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038550", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113837905", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113837905", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JTC6", "url": "https://www.orthodb.org/?gene=A0A9J7JTC6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24061", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24061", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24061:SF403", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24061:SF403", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00003", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00003", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01094", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01094", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07562", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07562", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027289527", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289527", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JTC6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTC6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JTC6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTC6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFNLTFLLLLLNIQIHMASVMQSRCFWKMKQKEGKHGDLKKGCFFSPRTVQWPADKEYFNQILNIQTPTENYKYALALAFTLDEVNRNPDLLPNKSLAFGCYKDNCFGLSQLYSMSQILPQDPVFFPNYNCEEDIVCSVMLTGPNWETSAILLAYVDLWKSQQFIHLTYGSYHPILSDHEKFPYLYQMAPKHTSLALAMVSVILHFSWNWVGLVISDNDQGTQFLSYLRRELEKNTVCFAFVNMIPINMQLYISRAELYYNQINTSSTNVVIIYGDTDSTLALSFQMWESRGLQKIWVITSHWDVTTSKRDFMLDSSHMTLAFVHHHGEISGFKDFVQTMNPLKYTDEYLARMEWMKFNCEVFTSNCKTLKNCSLNSPMEWLVVRSIDLSFSDGIYDIYNAVYALAHALHEMFLQQVEDTTIDNGKGHSSICLKLNTFLKKTQFTNPVGDRVNMNQKEEHQEEYDILQIWNFPHGLRFKVKIGQFSPYFPTGEQLHVYEEMIKWATGNTQMPPSVCSADCGPGFRKFWQEGMAVCCFKCQPCPENEISNETNMDQCVKCPDDQYANIEQNQCMHKEVIFLSYEDHLGITLGLIASCFSAFTTMVLGVFVKHHDTPIVKANNQKLSYILLISLFFCFLCSFLFIGRPNTATCILQQITFGVVFTVAVSTVLAKTVTVLLAFKVTAPDRRMRYFLISGAPNYIIAICTLIQVIICSVWLGVSPPSVSIDAHSEHGHIIIVCSKGSVTAFYCVLGYLACLAQVSFIVAFLSRNLPNTFNEAKFLTFSMLLFCCVWVT", "length": 794, "header": "tr|A0A9J7JTC6-1|A0A9J7JTC6_CRIGR Isoform 1 of Vomeronasal type-2 receptor 116-like OS=Cricetulus griseus OX=10029 GN=LOC113837905 PE=3 SV=1 CANONICAL=A0A9J7JTC6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JTC6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTC6/entry", "sequence": { "sequence": "MFNLTFLLLLLNIQIHMASVMQSRCFWKMKQKEGKHGDLKKGCFFSPRTVQWPADKEYFNQILNIQTPTENYKYALALAFTLDEVNRNPDLLPNKSLAFGCYKDNCFGLSQLYSMSQILPQDPVFFPNYNCEEDIVCSVMLTGPNWETSAILLAYVDLWKSQQFIHLTYGSYHPILSDHEKFPYLYQMAPKHTSLALAMVSVILHFSWNWVGLVISDNDQGTQFLSYLRRELEKNTVCFAFVNMIPINMQLYISRAELYYNQINTSSTNVVIIYGDTDSTLALSFQMWESRGLQKIWVITSHWDVTTSKRDFMLDSSHMTLAFVHHHGEISGFKDFVQTMNPLKYTDEYLARMEWMKFNCEVFTSNCKTLKNCSLNSPMEWLVVRSIDLSFSDGIYDIYNAVYALAHALHEMFLQQVEDTTIDNGKGHSSICLKLNTFLKKTQFTNPVGDRVNMNQKEEHQEEYDILQIWNFPHGLRFKVKIGQFSPYFPTGEQLHVYEEMIKWATGNTQMPPSVCSADCGPGFRKFWQEGMAVCCFKCQPCPENEISNETNMDQCVKCPDDQYANIEQNQCMHKEVIFLSYEDHLGITLGLIASCFSAFTTMVLGVFVKHHDTPIVKANNQKLSYILLISLFFCFLCSFLFIGRPNTATCILQQITFGVVFTVAVSTVLAKTVTVLLAFKVTAPDRRMRYFLISGAPNYIIAICTLIQVIICSVWLGVSPPSVSIDAHSEHGHIIIVCSKGSVTAFYCVLGYLACLAQVSFIVAFLSRNLPNTFNEAKFLTFSMLLFCCVWVT", "length": 794, "header": "tr|A0A9J7JTC6-1|A0A9J7JTC6_CRIGR Isoform 1 of Vomeronasal type-2 receptor 116-like OS=Cricetulus griseus OX=10029 GN=LOC113837905 PE=3 SV=1 CANONICAL=A0A9J7JTC6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [], "pathway": [ { "id": "cge:113837905", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113837905", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JTC6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTC6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JTC6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTC6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 264, "end_pos": 266, "annotation": "n_glycosylation_sequon" }, { "start_pos": 372, "end_pos": 374, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3, "end_pos": 5, "annotation": "n_glycosylation_sequon" }, { "start_pos": 549, "end_pos": 551, "annotation": "n_glycosylation_sequon" }, { "start_pos": 94, "end_pos": 96, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JTC6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTC6" }, { "id": "PS50259", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50259" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 3 profile", "eco_id": "ECO_0000259", "start_pos": 586, "end_pos": 794, "start_aa": "Leu", "end_aa": "Thr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 264, "end_pos": 266 }, { "start_pos": 372, "end_pos": 374 }, { "start_pos": 3, "end_pos": 5 }, { "start_pos": 549, "end_pos": 551 }, { "start_pos": 94, "end_pos": 96 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JTD0-1", "uniprot_ac": "A0A9J7JTD0", "uniprot_id": "A0A9J7JTD0_CRIGR", "mass": { "chemical_mass": 54201.0, "monoisotopic_mass": 54201.0 }, "refseq": { "ac": "XP_027289557", "name": "elongin-A3 member D-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289557" }, "gene_names": [ { "name": "LOC113837942", "type": "recommended", "evidence": [ { "id": "A0A9J7JTD0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTD0" } ] }, { "name": "LOC113837942", "type": "synonym", "evidence": [ { "id": "XP_027289557", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289557" } ] } ], "protein_names": [ { "name": "Elongin-A3 member D-like", "type": "synonym", "evidence": [ { "id": "A0A9J7JTD0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTD0/entry#names_and_taxonomy" } ] }, { "name": "elongin-A3 member D-like", "type": "synonym", "evidence": [ { "id": "XP_027289557", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289557" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023277124.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027289557", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289557" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JTD0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTD0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113837942", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTD0", "locus": {} } ], "crossref": [ { "id": "A0A9J7JTD0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JTD0", "database": "AlphaFoldDB", "categories": [] }, { "id": "113837942", "url": "https://www.ncbi.nlm.nih.gov/gene/113837942", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR051870", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051870", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113837942", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113837942", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JTD0", "url": "https://www.orthodb.org/?gene=A0A9J7JTD0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15141", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15141", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15141:SF75", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15141:SF75", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_027289557", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289557", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JTD0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTD0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JTD0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTD0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEMEAKCRLEALHKLRERLCTKTEPRQLYKTLKKLSSQPMLGDILEEIGFKQTIKLMKKQQLLVPFAKDLAARWSEQSQFGSQPDPGSQQDFDFPRSPKSEIRSNSPEDKRQKPAFWGHRENGSQVLEVSSSSPQLSMIESMDTSSKQITNGSPNAEPAGKMTQRGSFSENARHREPGTKTLSRKPEAGPAKQSLSLVRAKSPGPCIQEDHHPASFEACLDYDCSPSSSVLPPRKRKRKSTWKAEAQSPGAKVPRDKSPSCEDLNLLLVASPFPETTSNLQTCFPQDGPEDSSLQDDLEAAPWACRKYFKTPVVSGGRRARPFPQNSNQGRLAKQHSRWETHCQPALEEGPLWSLHQEDSPGTHINTAQRTGSQSESQTHLKMQESLQLRLQALCARIQNTQTKKPQGRQTKTVAFQAQVTRPGEHADSGPGPEASTENLQSLPEASGPGLLQRSPCPRLGGSSIGSNMTRAKKPAPLMAKALKDYKKW", "length": 489, "header": "tr|A0A9J7JTD0-1|A0A9J7JTD0_CRIGR Isoform 1 of Elongin-A3 member D-like OS=Cricetulus griseus OX=10029 GN=LOC113837942 PE=4 SV=1 CANONICAL=A0A9J7JTD0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JTD0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTD0/entry", "sequence": { "sequence": "MEMEAKCRLEALHKLRERLCTKTEPRQLYKTLKKLSSQPMLGDILEEIGFKQTIKLMKKQQLLVPFAKDLAARWSEQSQFGSQPDPGSQQDFDFPRSPKSEIRSNSPEDKRQKPAFWGHRENGSQVLEVSSSSPQLSMIESMDTSSKQITNGSPNAEPAGKMTQRGSFSENARHREPGTKTLSRKPEAGPAKQSLSLVRAKSPGPCIQEDHHPASFEACLDYDCSPSSSVLPPRKRKRKSTWKAEAQSPGAKVPRDKSPSCEDLNLLLVASPFPETTSNLQTCFPQDGPEDSSLQDDLEAAPWACRKYFKTPVVSGGRRARPFPQNSNQGRLAKQHSRWETHCQPALEEGPLWSLHQEDSPGTHINTAQRTGSQSESQTHLKMQESLQLRLQALCARIQNTQTKKPQGRQTKTVAFQAQVTRPGEHADSGPGPEASTENLQSLPEASGPGLLQRSPCPRLGGSSIGSNMTRAKKPAPLMAKALKDYKKW", "length": 489, "header": "tr|A0A9J7JTD0-1|A0A9J7JTD0_CRIGR Isoform 1 of Elongin-A3 member D-like OS=Cricetulus griseus OX=10029 GN=LOC113837942 PE=4 SV=1 CANONICAL=A0A9J7JTD0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [], "pathway": [ { "id": "cge:113837942", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113837942", "resource": "KEGG 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Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: incomplete on the carboxy end.", "evidence": [ { "database": "RefSeq", "id": "XP_027289726", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289726" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JTF1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTF1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100760141", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTF1", "locus": {} } ], "crossref": [ { "id": "A0A9J7JTF1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JTF1", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd06365", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06365", "database": "CDD", "categories": [ 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"categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JTG3", "url": "https://www.orthodb.org/?gene=A0A9J7JTG3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45774", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45774", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45774:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45774:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00651", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00651", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07707", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07707", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08005", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08005", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": 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104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 4% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276942.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027289801", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289801" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JTG5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTG5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100773844", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTG5", "locus": {} } ], "crossref": [ { "id": "A0A9J7JTG5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JTG5", "database": "AlphaFoldDB", "categories": [] }, { "id": "100773844", "url": "https://www.ncbi.nlm.nih.gov/gene/100773844", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": 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Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 3% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027275193", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027275193" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JTH7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTH7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cbarp", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTH7", "locus": {} } ], "crossref": [ { "id": "100754798", "url": "https://www.ncbi.nlm.nih.gov/gene/100754798", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR037658", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037658", "database": "InterPro", "categories": [ "Protein Classification" ] 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"tr|A0A9J7JTH7-1|A0A9J7JTH7_CRIGR Isoform 1 of Voltage-dependent calcium channel beta subunit-associated regulatory protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Cbarp PE=4 SV=1 CANONICAL=A0A9J7JTH7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JTH7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTH7/entry", "sequence": { "sequence": "MQPTATMATEATTAATVALTTSWDNATSRPTAEPDPILDNYVLLVVVMSLFIGGTLVVLSGVLLLCKRCWEVHQRFNRAMDEAEKTTTTYLDNGTHPIQDPDCRGEDPESQDTETERFLATSSTGRRVSFNEAALFEQSRKAQDKGRRYTLTEGDFHHLKNARLTHLHLPPLKIATIHECEPGEASSVATPHPATTPKDSLAIFQPPGKALTGRSVGPSSALPGDPYNSVDFSEISPSASSDSGEGTSLDAGVRGAKAAGPGPGPEAAPGEMGTGSSGPGTVLQFFTRLRRHASLDGASPYFKVKKWKLEPSQRASSLDTRGSPKRHHFQRQRAASESMEQEGDAPHADFIQYIASAGDSVAFPPPRPFLASPTSPPPTLGRLEAAEAAGGASPETPPEHSLGPEHAQQQDPQQEQDVEHAQCSYRDLWSLRASLELHAATASDHSSSGNDRDSVRSGDSSGSGSGGGGVAPAFPPPPESPPALRPKDGEARRLLQMDSGYASIEGRGAGDEASEFPAPARSPPRSPRAWPRRPRRDYSIDEKTDALFHEFLRHDPHFDDAPRHRARAHPHAHARKQWQQRGRQHSDPGGARVATPPGVVRPARAPLRRGDSVDCPPEGRALPTTGDDTSIPVIEEEPGSGSGSCPGSGLCVEPAGALLDKLAASLDERLFAPRLPEPVASSPVLIVAAAAPTSPDHSPA", "length": 700, "header": "tr|A0A9J7JTH7-1|A0A9J7JTH7_CRIGR Isoform 1 of Voltage-dependent calcium channel beta subunit-associated regulatory protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Cbarp PE=4 SV=1 CANONICAL=A0A9J7JTH7-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 693, "start_aa": "Thr", "end_pos": 693, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr693", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JTH7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTH7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754798", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754798", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JTH7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTH7" } ], "pmid": "" }, { "name": "secretory granule", "id": "GO:0030141", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030141", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JTH7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTH7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transmembrane transporter binding", "id": "GO:0044325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044325", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JTH7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTH7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "negative regulation of calcium ion-dependent exocytosis", "id": "GO:0045955", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045955", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JTH7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTH7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 25, "end_pos": 27, "annotation": "n_glycosylation_sequon" }, { "start_pos": 93, "end_pos": 95, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], 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"count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JTJ2-1", "uniprot_ac": "A0A9J7JTJ2", "uniprot_id": "A0A9J7JTJ2_CRIGR", "mass": { "chemical_mass": 53482.0, "monoisotopic_mass": 53482.0 }, "refseq": { "ac": "XP_027289958", "name": "pregnancy-specific glycoprotein 22-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289958" }, "gene_names": [ { "name": "LOC113838520", "type": "recommended", "evidence": [ { "id": "A0A9J7JTJ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTJ2" } ] }, { "name": "LOC113838520", "type": "synonym", "evidence": [ { "id": "XP_027289958", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289958" } ] } ], "protein_names": [ { "name": "Pregnancy-specific glycoprotein 22-like", "type": "synonym", "evidence": [ { "id": "A0A9J7JTJ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTJ2/entry#names_and_taxonomy" } ] }, { "name": "pregnancy-specific glycoprotein 22-like", "type": "synonym", "evidence": [ { "id": "XP_027289958", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289958" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027289958", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289958" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JTJ2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTJ2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113838520", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTJ2", "locus": {} } ], "crossref": [ { "id": "A0A9J7JTJ2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JTJ2", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd05740", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05740", "database": "CDD", "categories": [ "Protein 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"MALSSVLLYKGYTLWQGFLLTASLLTCWHLSTTAKVTIESVPSPVIEGENVLLSAKNLPNNLVAFAWFKTVKTMRRGIALYTLTTNVSAAGPQYSGRETLFSNGSLWLTNVTPKDKGFYTLRTIHKSGKIVSTTRMYLHVYSFLFTCGRPHPFAPPTIELVPPNVTEGENVLLLVHNLPMNLQALFWYKGLAVLKEFEIAQHIRAIDSSVQGPAHSGREALFRNGSLMFYNVLWKDNGFYTLRTLTTDLKTQVAHVQLQVDTTLSTCCRDLTSAQVTIESMPRYVAEGGSVLLLVHNLPEDLRGFSWYKSLNSTDDFKIAEYSRDISFTVWGLAHSQRDTVYTNGSLLLQDVTNKDAGWYMLETFNRDWEIEKAYVQLHVNKPVTQPFVRLSDTTVTVRSSVVLTCFSADPGISTRWILNNKSLQLTERMKLSPTKCQLTIDPVRREDAGEYQCEVSNPVSSKTSLPVRLTVRKK", "length": 475, "header": "tr|A0A9J7JTJ2-1|A0A9J7JTJ2_CRIGR Isoform 1 of Pregnancy-specific glycoprotein 22-like OS=Cricetulus griseus OX=10029 GN=LOC113838520 PE=3 SV=1 CANONICAL=A0A9J7JTJ2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JTJ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTJ2/entry", "sequence": { "sequence": 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"MDRTPHSKSFKDKTLSYTLLLIGCLFTPHVATNPHRVYNITWKIANLGTGEIANLSTYIGTLHDGFPPLYVDLCDLVGSDWDPSDQEPFPGYGCHHPGGRIGTRSKDFYVCPGHKPTHGCGGPQEGYCARWGCETTGEAYWKPSSSWDFITLKRREIPGYAGKGPWRCGQRACGPCYDSAGGGGFQGATPGGKCNPLILRFTDAGKRTTWDSPKVWGLRLHQAGKDPMTLFSLYRQITPLSQQSVGPNTVIADQRAPTQFQVPEPPTVLKAITPTPGAVTFSPTPDALNVEITRDPPGTGDRLLQLIQGVYQALNFSDPNKTQECWLCLVSRPPYYEGVAILGNYSNQTSAPTSCGAAMQHKLTISEVSGKGLCIGRIPPSHQELCNQVEPLSQDSRYLVAPYGTYWACSTGLTPCVSTTVLNTTIDFCILIELWPKVTYHQPEYVYSVLEKSTRYKREPISFTVALLLGGITVGGIAAGIGTGTVALQGINHFKLLQQAMHTDIQVLEESVSALEKSLTSLSEVVLQNRRGLDLLFLQEGGLCAALKEECCFYADHTGIVRDSMAKLRERLKQRQQLFESQQGWFEGWFAKSPWLTTLISTLMGPLVILFLILIFGPCILNKLTQFIRERLSVVQALVLTQQYHQLKQIDPEYPETSE", "length": 659, "header": "tr|A0A9J7JTN9-1|A0A9J7JTN9_CRIGR Isoform 1 of MLV-related proviral Env polyprotein-like OS=Cricetulus griseus OX=10029 GN=LOC113838935 PE=4 SV=1 CANONICAL=A0A9J7JTN9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JTN9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTN9/entry", "sequence": { "sequence": "MDRTPHSKSFKDKTLSYTLLLIGCLFTPHVATNPHRVYNITWKIANLGTGEIANLSTYIGTLHDGFPPLYVDLCDLVGSDWDPSDQEPFPGYGCHHPGGRIGTRSKDFYVCPGHKPTHGCGGPQEGYCARWGCETTGEAYWKPSSSWDFITLKRREIPGYAGKGPWRCGQRACGPCYDSAGGGGFQGATPGGKCNPLILRFTDAGKRTTWDSPKVWGLRLHQAGKDPMTLFSLYRQITPLSQQSVGPNTVIADQRAPTQFQVPEPPTVLKAITPTPGAVTFSPTPDALNVEITRDPPGTGDRLLQLIQGVYQALNFSDPNKTQECWLCLVSRPPYYEGVAILGNYSNQTSAPTSCGAAMQHKLTISEVSGKGLCIGRIPPSHQELCNQVEPLSQDSRYLVAPYGTYWACSTGLTPCVSTTVLNTTIDFCILIELWPKVTYHQPEYVYSVLEKSTRYKREPISFTVALLLGGITVGGIAAGIGTGTVALQGINHFKLLQQAMHTDIQVLEESVSALEKSLTSLSEVVLQNRRGLDLLFLQEGGLCAALKEECCFYADHTGIVRDSMAKLRERLKQRQQLFESQQGWFEGWFAKSPWLTTLISTLMGPLVILFLILIFGPCILNKLTQFIRERLSVVQALVLTQQYHQLKQIDPEYPETSE", "length": 659, "header": "tr|A0A9J7JTN9-1|A0A9J7JTN9_CRIGR Isoform 1 of MLV-related proviral Env polyprotein-like OS=Cricetulus griseus OX=10029 GN=LOC113838935 PE=4 SV=1 CANONICAL=A0A9J7JTN9-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 275, "start_aa": "Thr", "end_pos": 275, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr275", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 284, "start_aa": "Thr", "end_pos": 284, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr284", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [], "pathway": [ { "id": "cge:113838935", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113838935", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 315, "end_pos": 317, "annotation": "n_glycosylation_sequon" }, { "start_pos": 320, "end_pos": 322, "annotation": "n_glycosylation_sequon" }, { "start_pos": 344, "end_pos": 346, "annotation": "n_glycosylation_sequon" }, { "start_pos": 347, "end_pos": 349, "annotation": "n_glycosylation_sequon" }, { "start_pos": 39, "end_pos": 41, "annotation": "n_glycosylation_sequon" }, { "start_pos": 423, "end_pos": 425, "annotation": "n_glycosylation_sequon" }, { "start_pos": 54, "end_pos": 56, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 275, 284 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 315, "end_pos": 317 }, { "start_pos": 320, "end_pos": 322 }, { "start_pos": 344, "end_pos": 346 }, { "start_pos": 347, "end_pos": 349 }, { "start_pos": 39, "end_pos": 41 }, { "start_pos": 423, "end_pos": 425 }, { "start_pos": 54, "end_pos": 56 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JTP3-1", "uniprot_ac": "A0A9J7JTP3", "uniprot_id": "A0A9J7JTP3_CRIGR", "mass": { "chemical_mass": 67148.0, "monoisotopic_mass": 67148.0 }, "refseq": { "ac": "XP_027279977", "name": "LOW QUALITY PROTEIN: TANK-binding kinase 1-binding protein 1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027279977" }, "gene_names": [ { "name": "Tbkbp1", "type": "recommended", "evidence": [ { "id": "A0A9J7JTP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTP3" } ] }, { "name": "Tbkbp1", "type": "synonym", "evidence": [ { "id": "XP_027279977", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027279977" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: TANK-binding kinase 1-binding protein 1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027279977", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027279977" }, { "id": "A0A9J7JTP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTP3/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027279977", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027279977" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JTP3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTP3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tbkbp1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTP3", "locus": {} } ], "crossref": [ { "id": "100762608", "url": "https://www.ncbi.nlm.nih.gov/gene/100762608", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR024581", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024581", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041641", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041641", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051891", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051891", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762608", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762608", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JTP3", "url": "https://www.orthodb.org/?gene=A0A9J7JTP3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14432", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14432", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14432:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14432:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12845", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12845", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027279977", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027279977", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JTP3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTP3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JTP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTP3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MESMFEDDISILTQEALGPSEVWLDGPGDSSLGGDMCSASHFALITAYGDIKERLGGLERENATLRRRLKVYEIKYPLITDFGEEHGFPLCEIKDGSLLELEKVSLQQRFNQFQHELQKNKEQEEQLGEMIQAYEKLCVEKNDLETELGEMRALVETHLRQICGLEQQLQQQQGLRDAAFPSLSPPPAPATPCPDLDLHYLALRGGPALGHAGWPGPTSVSVSELERRQLEEALEAAQGEARGAQLREEQLQAECERLQGELKQLQETRAQDLASNQSECDMAWVKRVGDDQVNLALAYTELTEELGRLRELSSLQGRILRTLLQEQARNAGQRHSPLSQRHSPAPACPSPSPPARPPPCAPCQSPAAQRRSPXPPCPSPQQRRSPASPSCPSPVPQRRSPVPPSCQSPSPQRRSPVPPSCPAPQPRPPPPPGERTLAERAYAKPPSHHAKAGFQGRRSYSELAEGAAYAGASPAWLQAEAATLPKPRAYGELYGPGRPLSPRRAFEGIRLRFEKQPSEEEEWAMPASPPSPEAGTIRCASFCAGFPIPESPAANAYAHAEHAQSWPSINLLMETVGSDIRSCPLCQLGFPVGYPDDALIKHIDSHLENSKI", "length": 612, "header": "tr|A0A9J7JTP3-1|A0A9J7JTP3_CRIGR Isoform 1 of LOW QUALITY PROTEIN: TANK-binding kinase 1-binding protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Tbkbp1 PE=4 SV=1 CANONICAL=A0A9J7JTP3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JTP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTP3/entry", "sequence": { "sequence": "MESMFEDDISILTQEALGPSEVWLDGPGDSSLGGDMCSASHFALITAYGDIKERLGGLERENATLRRRLKVYEIKYPLITDFGEEHGFPLCEIKDGSLLELEKVSLQQRFNQFQHELQKNKEQEEQLGEMIQAYEKLCVEKNDLETELGEMRALVETHLRQICGLEQQLQQQQGLRDAAFPSLSPPPAPATPCPDLDLHYLALRGGPALGHAGWPGPTSVSVSELERRQLEEALEAAQGEARGAQLREEQLQAECERLQGELKQLQETRAQDLASNQSECDMAWVKRVGDDQVNLALAYTELTEELGRLRELSSLQGRILRTLLQEQARNAGQRHSPLSQRHSPAPACPSPSPPARPPPCAPCQSPAAQRRSPXPPCPSPQQRRSPASPSCPSPVPQRRSPVPPSCQSPSPQRRSPVPPSCPAPQPRPPPPPGERTLAERAYAKPPSHHAKAGFQGRRSYSELAEGAAYAGASPAWLQAEAATLPKPRAYGELYGPGRPLSPRRAFEGIRLRFEKQPSEEEEWAMPASPPSPEAGTIRCASFCAGFPIPESPAANAYAHAEHAQSWPSINLLMETVGSDIRSCPLCQLGFPVGYPDDALIKHIDSHLENSKI", "length": 612, "header": "tr|A0A9J7JTP3-1|A0A9J7JTP3_CRIGR Isoform 1 of LOW QUALITY PROTEIN: TANK-binding kinase 1-binding protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Tbkbp1 PE=4 SV=1 CANONICAL=A0A9J7JTP3-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 191, "start_aa": "Thr", "end_pos": 191, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr191", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 218, "start_aa": "Thr", "end_pos": 218, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr218", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035294558", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035294558" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JTR6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTR6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC107978069", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTR6", "locus": {} } ], "crossref": [ { "id": "A0A9J7JTR6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JTR6", "database": "AlphaFoldDB", "categories": [] }, { "id": "107978069", "url": "https://www.ncbi.nlm.nih.gov/gene/107978069", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:107978069", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:107978069", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_035294558", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035294558", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JTR6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTR6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JTR6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTR6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALYPGHQKRHLRKDDIYAESKFGDWGQAEFQANLTNWRETLALSILQVYDRAWGLRNRRGPAPGAGAGVNRAARLPGCERPSARHYKCQTATPRNREASPGVGFGAQENEAPAPVPQTGRDSGETSARPRATPDSSHQHVLPRPHPSRPKLPPSPRPPPDSTRWDAGTWHTSRGIRAKSGPPPARNRQASRGPRAAAETATGSARPGGGGSRRARDTTASDPPVRMCAGERAGAQTGDAKGGAGSAQASSSR", "length": 253, "header": "tr|A0A9J7JTR6-1|A0A9J7JTR6_CRIGR Isoform 1 of Translation initiation factor IF-2-like OS=Cricetulus griseus OX=10029 GN=LOC107978069 PE=4 SV=1 CANONICAL=A0A9J7JTR6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JTR6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTR6/entry", "sequence": { "sequence": "MALYPGHQKRHLRKDDIYAESKFGDWGQAEFQANLTNWRETLALSILQVYDRAWGLRNRRGPAPGAGAGVNRAARLPGCERPSARHYKCQTATPRNREASPGVGFGAQENEAPAPVPQTGRDSGETSARPRATPDSSHQHVLPRPHPSRPKLPPSPRPPPDSTRWDAGTWHTSRGIRAKSGPPPARNRQASRGPRAAAETATGSARPGGGGSRRARDTTASDPPVRMCAGERAGAQTGDAKGGAGSAQASSSR", "length": 253, "header": "tr|A0A9J7JTR6-1|A0A9J7JTR6_CRIGR Isoform 1 of Translation initiation factor IF-2-like OS=Cricetulus griseus OX=10029 GN=LOC107978069 PE=4 SV=1 CANONICAL=A0A9J7JTR6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JTR6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTR6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 34, "end_pos": 36 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { 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automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035294594", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035294594" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JTS6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTS6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113833766", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTS6", "locus": {} } ], "crossref": [ { "id": "cd09851", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09851", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "113833766", "url": "https://www.ncbi.nlm.nih.gov/gene/113833766", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008981", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008981", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018154", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018154", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113833766", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113833766", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JTS6", "url": "https://www.orthodb.org/?gene=A0A9J7JTS6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10424", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10424", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10424:SF72", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10424:SF72", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00429", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00429", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035294594", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035294594", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JTS6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTS6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JTS6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTS6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDCTPHSKSFKDKTLSYTLLLIGCLFTPHVATNPHRVYNITWKIANLGTGEIANLSTYIGTLHDGFPPLYVDLCDLVGSDWDPSDQEPFPGYGCHHPGGRIGTRSKDFYVCPGHKPTHDCGGPQEGYCANWGCETTGEAYWKPSSSWDFITLKRREIPRYAGKGPWRCGQRAFGPCYDSARGGGFQGATPGGKCNPLILRFTDAGKRTTWDSPKVWGLRLYRAGKDPVTLFSLYRQITPLSQQSVGPNPVIADQRAPTQFQVPEPPTVPKAITPTPGAVIFSPSPDALNIEITRDPPGTGDRLLQLIQGVYQALNFSDPNKTQECWLCLVSQPPYYEGVAILGNYSNQISAPTSCGAAMQHKLTISEVSGKGLCIGRIPPSHQELCNQVEPLSQDSRYLVAPYGTYWACSTGLTPCVSTTVLNTTIDFCILIELWPKVTYHQPKYVYSILGKSTXYKREPISFTMALLLGGVTVGGIAAGIGTGTISVSALKKSLTSLSEVVLQNRQGLDLLFLQEGGLCADLKEECCFYADHTGIVRDSMAKLRERLNQR", "length": 551, "header": "tr|A0A9J7JTS6-1|A0A9J7JTS6_CRIGR Isoform 1 of LOW QUALITY PROTEIN: MLV-related proviral Env polyprotein-like OS=Cricetulus griseus OX=10029 GN=LOC113833766 PE=4 SV=1 CANONICAL=A0A9J7JTS6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JTS6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTS6/entry", "sequence": { "sequence": "MDCTPHSKSFKDKTLSYTLLLIGCLFTPHVATNPHRVYNITWKIANLGTGEIANLSTYIGTLHDGFPPLYVDLCDLVGSDWDPSDQEPFPGYGCHHPGGRIGTRSKDFYVCPGHKPTHDCGGPQEGYCANWGCETTGEAYWKPSSSWDFITLKRREIPRYAGKGPWRCGQRAFGPCYDSARGGGFQGATPGGKCNPLILRFTDAGKRTTWDSPKVWGLRLYRAGKDPVTLFSLYRQITPLSQQSVGPNPVIADQRAPTQFQVPEPPTVPKAITPTPGAVIFSPSPDALNIEITRDPPGTGDRLLQLIQGVYQALNFSDPNKTQECWLCLVSQPPYYEGVAILGNYSNQISAPTSCGAAMQHKLTISEVSGKGLCIGRIPPSHQELCNQVEPLSQDSRYLVAPYGTYWACSTGLTPCVSTTVLNTTIDFCILIELWPKVTYHQPKYVYSILGKSTXYKREPISFTMALLLGGVTVGGIAAGIGTGTISVSALKKSLTSLSEVVLQNRQGLDLLFLQEGGLCADLKEECCFYADHTGIVRDSMAKLRERLNQR", "length": 551, "header": "tr|A0A9J7JTS6-1|A0A9J7JTS6_CRIGR Isoform 1 of LOW QUALITY PROTEIN: MLV-related proviral Env polyprotein-like OS=Cricetulus griseus OX=10029 GN=LOC113833766 PE=4 SV=1 CANONICAL=A0A9J7JTS6-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", 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Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JTS6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTS6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JTS6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTS6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113833766", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113833766", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 315, "end_pos": 317, "annotation": "n_glycosylation_sequon" }, { "start_pos": 320, "end_pos": 322, "annotation": "n_glycosylation_sequon" }, { "start_pos": 344, "end_pos": 346, "annotation": "n_glycosylation_sequon" }, { "start_pos": 39, "end_pos": 41, "annotation": "n_glycosylation_sequon" }, { "start_pos": 423, "end_pos": 425, "annotation": "n_glycosylation_sequon" }, { "start_pos": 54, "end_pos": 56, "annotation": 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"type": "synonym", "evidence": [ { "id": "A0A9J7JTW9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTW9/entry#names_and_taxonomy" } ] }, { "name": "extensin-like", "type": "synonym", "evidence": [ { "id": "XP_035294748", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035294748" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035294748", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035294748" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JTW9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTW9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC118238208", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTW9", "locus": {} } ], "crossref": [ { "id": "118238208", "url": "https://www.ncbi.nlm.nih.gov/gene/118238208", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:118238208", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118238208", "database": "KEGG Pathway", "categories": [ 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"MEAAVQVFILNSVALFPLLLAKPDSEHLIQRYPRGALKFVAIYYSNNRKLKDFSRPYHLPPNHHLHHPHHHYHHQPPPPTTPPPPPPPPPPPPPTDHHTTDNTPPPTSRPTTTTTQYPPTTNHLHHLPPNNHTQPIAPPTSLHHLHAPPPPTTIHHHHIPSHHLTTLHNLHHTRPTHHLHHPPPPPPPTYHPPPPRHHQTPPPKTSTTSTSPPSQPPSHHPPPPPDHLTPPSTTTDTTHTTSTHATPLTTTSRHTVPPHQPPHHPPHTTSHRTHSTSTSTPPKPSTPHVQPPPPPSTTNPPRTNTPLHPSQPPPPPLQPTHPHHPPPPPPPHHHHAPPPPITVHLHSTNLQATPPATHLHLHRPHLPPPHHHLTPPPPLTLRHTSTTLPNLHTPTPQPPPTTTRTHHASHTSTSTYTLPPSPPPTSTLILAPPTTHHQPPPTTSTSHHSTSHQPRTRPTTCHTVHHQRTITSPPPHHRSTAPPQHLHQPPPTTSTTIHHHLHHRPHTNHPPPPSTTTHHHLPPRFQPPPPHTSTTTXXERYLSHHLHHLHHSTSPPSTTHPRHRSNTHRTPNPPHQPPPNIHLHLTRVDVFVLELETKHKCAKSAMGLTNSTAPVTDITTPATTICLRRGLR", "length": 632, "header": "tr|A0A9J7JTW9-1|A0A9J7JTW9_CRIGR Isoform 1 of Extensin-like OS=Cricetulus griseus OX=10029 GN=LOC118238208 PE=4 SV=1 CANONICAL=A0A9J7JTW9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JTW9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTW9/entry", "sequence": { "sequence": 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"type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 80, "start_aa": "Thr", "end_pos": 80, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr80", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027280693", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027280693" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JU43", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JU43" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100775082", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JU43", "locus": {} } ], "crossref": [ { "id": "A0A9J7JU43", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JU43", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00190", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00190", "database": "CDD", "categories": [ "Protein 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##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. 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"subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 552, "start_aa": "Thr", "end_pos": 552, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr552", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JU46", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JU46" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JU46", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JU46" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100761672", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761672", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JU46", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JU46" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1520, "end_pos": 1522, "annotation": "n_glycosylation_sequon" }, { "start_pos": 517, "end_pos": 519, 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Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035295095", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295095" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JU69", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JU69" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Pdzrn4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JU69", "locus": {} } ], "crossref": [ { "id": "A0A9J7JU69", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JU69", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd06715", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06715", "database": "CDD", "categories": [ "Protein Classification" ] 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"length": 1016, "header": "tr|A0A9J7JU69-1|A0A9J7JU69_CRIGR Isoform 1 of PDZ domain-containing RING finger protein 4 isoform X2 OS=Cricetulus griseus OX=10029 GN=Pdzrn4 PE=4 SV=1 CANONICAL=A0A9J7JU69-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K428-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K428/entry", "sequence": { "sequence": "MGCNLCTFQKREEHYKLLYEVSQVNGKDLSKATHEEAVEAFRTAKEPIVVQVLRRTPLSRPTYGMVPEVQLMNASTQTDITFEHIMALAKLRPLTPPVPDTCPFLLSDSCHSLHAVGHGFYEDNECVSSLPADADRAEDFEYEEVELCRVSSQEKLGLTVCYRTDDEEDMGIYVSEVDPNSIAAKDGRIREGDRILQINGEDIQNREEAVALLSSEECKSVVLLIARPDMQLDEGWLEDERNEFLEELNSEMLEEEHNEGAQHTANELQQTKKQEEEEGTTDTATSSSNNQEKDSGVGRTDESLRNDESSEQENAVEDPHSTSLKSKRELGQSQDTLGSLELQCNESLAGGECLDSDCASNHEVCEGFQQLLELKIRNHGDYDLYYSSSTIECNQGEQDGVEHELQLLNEELRNIELECQNIMQAHRLQRVTDQYGDIWALHDGGFRNYNTSLDTSRGKLDDIMEHPEKSDKDSSSAYNTAESCRSTPLTIDRSPDSSLPRIINLANKKNLRSTMTTHQSPSRPSTKEYTSTNVKTTNIKTTNEGCSIASLEKSLENYQLLEQENTVNEHTPYLSPYHSSAYRYANIPAHARHYQSYMQLIQQKSAVEYAQSQLSLVSMCKDSQKGSEPKMEWKVKIRSDGTRYITKRPVRDRILKERALKIKEERSGMTTDDDTMSEMKMGRYWSKEERKQHLVRAKEQRRRREFMMRSRLECLKESPQSSGEGKKELSIIELSHKKMMKKRNKKILDNWMTIQELMTHGAKSPDGTRVHNAFLSVTTV", "length": 780, "header": "tr|A0A9J7K428-1|A0A9J7K428_CRIGR Computationally mapped isoform of PDZ domain-containing RING finger protein 4 isoform X3 OS=Cricetulus griseus OX=10029 GN=Pdzrn4 PE=4 SV=1 CANONICAL=A0A9J7JU69-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JU69", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JU69" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"annotation": "n_glycosylation_sequon" }, { "start_pos": 686, "end_pos": 688, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JU69", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JU69" }, { "id": "PS50106", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50106" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PDZ", "eco_id": "ECO_0000259", "start_pos": 202, "end_pos": 292, "start_aa": "Thr", "end_aa": "Thr", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7JU69", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JU69" }, { "id": "PS50089", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RING-type", 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"https://www.ncbi.nlm.nih.gov/protein/XP_027276502", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JUE0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUE0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JUE0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUE0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDLHSGAPFLHHFLIRRPFPAHAGHCGGPYRALQQPRPLHLSPLHCPRVTEETRGLRLPAYGARTPPQCDALISGKPSPPSVLPAFRKPSWVLEIPASSAAIWPRPSSTQIASPAPVRPAPRRGRSRSPSGGVTMEEDDESRGKAEESGEDRGDGPPDRDSALSPSAFILRAIQQAVGSSLQGDLPNEKDGSRCRGLRWRRCCRSPRSEPRSQESGGADTATVLDTAADSFLVGLVNILDPPDTWVPSRLDLRPGESEDMLELVAEVRIGDRDPMPLPVPSLLPRLRAWRTGKTVSPQSHASRPACARHLLTLGTGDGGPAPPPAPSSASSSPSPSPSSSSPSPPXPPPPPPPSLPAPRFDIYDPFHPTDEAYSPPPAPEQKYDPFEPTGSNPSSSAGSPSPEEEEEEEEEEEEEEGLSQSISRISETLAGIYDDNSLSQDFPGDDSPRPEPPPLQTLGAPGTPPQADSTRVEGAPRRRVFVVGPEVEACLEGKVSVEVVTGGGPGLQLPPLPPTDPEIEEGEIVQPEEEPRVAVSLFRAGRPRQPPASVATLASVATPAAPAASAPRAPEGDDFLSLHADSDGEGALQVDLGEPPAPPAADARWGGLDLRRKILTQRRERYRQRSASPGPPPARKKARRERQRSGDPAPPDSPAWDAKKHRSRERKLSSHSAARRRSRSRSRRRSRSRSADRRRGGHRSRSREKRRRRRRSASPPPAASSSSSSRRERHRGKRREGGKKKKKRSRSRAEKRAGDVEKLPAPVPPSGSDRDSRRRGAVPPSIQDLTDHDLFAIKRTITVGRPDKAEPRAPSPAPAMSPKREVLYDSEGLSADERGGKSDKDRRRSGAASSSSSSREKGSRRKALDGGDRGRDRDRSSKKTRPPKDSAPGSGPLPKPPLSSGSSSSSSSCSSRKVKLQSKVAVLIREGVSSTTPAKDSSSSGLGSIGVKFSRDRESRSPFLKPDERAPSEVAKVAPGSAKPKKTKAKAKAGAKKAKGTKGKTKPSKTRKKIRSGGSSTAGGPGSLKKSKADSCSQAASAKGTEETWSGEERTTKAPSTPPPKVAPPPPALTPDSQTVDSSCKTPEVSFLPEEATEDPGVRVGAEEEEEEEEEEEEEQQPATTTATSTAAAAPSTAPSAGSTAGDSGAEDGPASRVSQLPTLPPPMPWNLPAGVDCTTSGVLALTALLFKMEEANLASRAKAQELIQATNQILSHRKPPSTLGVNPAPVPTSLGLPPGPSSYLLPGSLPIGGCGSTPPTPTGLAPASDKREGSSSSEGRGDTDKYLKKLHTQERAVEEVKLAIKPYYQKKDITKEEYKDILRKAVHKICHSKSGEINPVKVGNLVRAYVQRYRYFRKHGRKPGDPPGPPRPPKEPGPPDKGGPGLPLPPL", "length": 1388, "header": "tr|A0A9J7JUE0-1|A0A9J7JUE0_CRIGR Isoform 1 of LOW QUALITY PROTEIN: splicing factor, arginine/serine-rich 19 isoform X2 OS=Cricetulus griseus OX=10029 GN=Scaf1 PE=4 SV=1 CANONICAL=A0A9J7JUE0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JUE0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUE0/entry", "sequence": { "sequence": "MDLHSGAPFLHHFLIRRPFPAHAGHCGGPYRALQQPRPLHLSPLHCPRVTEETRGLRLPAYGARTPPQCDALISGKPSPPSVLPAFRKPSWVLEIPASSAAIWPRPSSTQIASPAPVRPAPRRGRSRSPSGGVTMEEDDESRGKAEESGEDRGDGPPDRDSALSPSAFILRAIQQAVGSSLQGDLPNEKDGSRCRGLRWRRCCRSPRSEPRSQESGGADTATVLDTAADSFLVGLVNILDPPDTWVPSRLDLRPGESEDMLELVAEVRIGDRDPMPLPVPSLLPRLRAWRTGKTVSPQSHASRPACARHLLTLGTGDGGPAPPPAPSSASSSPSPSPSSSSPSPPXPPPPPPPSLPAPRFDIYDPFHPTDEAYSPPPAPEQKYDPFEPTGSNPSSSAGSPSPEEEEEEEEEEEEEEGLSQSISRISETLAGIYDDNSLSQDFPGDDSPRPEPPPLQTLGAPGTPPQADSTRVEGAPRRRVFVVGPEVEACLEGKVSVEVVTGGGPGLQLPPLPPTDPEIEEGEIVQPEEEPRVAVSLFRAGRPRQPPASVATLASVATPAAPAASAPRAPEGDDFLSLHADSDGEGALQVDLGEPPAPPAADARWGGLDLRRKILTQRRERYRQRSASPGPPPARKKARRERQRSGDPAPPDSPAWDAKKHRSRERKLSSHSAARRRSRSRSRRRSRSRSADRRRGGHRSRSREKRRRRRRSASPPPAASSSSSSRRERHRGKRREGGKKKKKRSRSRAEKRAGDVEKLPAPVPPSGSDRDSRRRGAVPPSIQDLTDHDLFAIKRTITVGRPDKAEPRAPSPAPAMSPKREVLYDSEGLSADERGGKSDKDRRRSGAASSSSSSREKGSRRKALDGGDRGRDRDRSSKKTRPPKDSAPGSGPLPKPPLSSGSSSSSSSCSSRKVKLQSKVAVLIREGVSSTTPAKDSSSSGLGSIGVKFSRDRESRSPFLKPDERAPSEVAKVAPGSAKPKKTKAKAKAGAKKAKGTKGKTKPSKTRKKIRSGGSSTAGGPGSLKKSKADSCSQAASAKGTEETWSGEERTTKAPSTPPPKVAPPPPALTPDSQTVDSSCKTPEVSFLPEEATEDPGVRVGAEEEEEEEEEEEEEQQPATTTATSTAAAAPSTAPSAGSTAGDSGAEDGPASRVSQLPTLPPPMPWNLPAGVDCTTSGVLALTALLFKMEEANLASRAKAQELIQATNQILSHRKPPSTLGVNPAPVPTSLGLPPGPSSYLLPGSLPIGGCGSTPPTPTGLAPASDKREGSSSSEGRGDTDKYLKKLHTQERAVEEVKLAIKPYYQKKDITKEEYKDILRKAVHKICHSKSGEINPVKVGNLVRAYVQRYRYFRKHGRKPGDPPGPPRPPKEPGPPDKGGPGLPLPPL", "length": 1388, "header": "tr|A0A9J7JUE0-1|A0A9J7JUE0_CRIGR Isoform 1 of LOW QUALITY PROTEIN: splicing factor, arginine/serine-rich 19 isoform X2 OS=Cricetulus griseus OX=10029 GN=Scaf1 PE=4 SV=1 CANONICAL=A0A9J7JUE0-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1257, "start_aa": "Thr", "end_pos": 1257, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1257", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 558, "start_aa": "Thr", "end_pos": 558, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr558", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JUE0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUE0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JUE0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUE0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100767426", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767426", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA polymerase II C-terminal domain binding", "id": "GO:0099122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099122", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JUE0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUE0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JUE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUE0" }, { "id": "PF23030", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23030" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SFR19-like C-terminal", "eco_id": "ECO_0000259", "start_pos": 1280, "end_pos": 1359, "start_aa": "Thr", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 558, 1257 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { 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"snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JUF1-1", "uniprot_ac": "A0A9J7JUF1", "uniprot_id": "A0A9J7JUF1_CRIGR", "mass": { "chemical_mass": 30344.0, "monoisotopic_mass": 30344.0 }, "refseq": { "ac": "XP_035295464", "name": "LOW QUALITY PROTEIN: transmembrane protein 200B-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295464" }, "gene_names": [ { "name": "LOC113833861", "type": "recommended", "evidence": [ { "id": "A0A9J7JUF1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUF1" } ] }, { "name": "LOC113833861", "type": "synonym", "evidence": [ { "id": "XP_035295464", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295464" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: transmembrane protein 200B-like", "type": "synonym", "evidence": [ { "id": "XP_035295464", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295464" }, { "id": "A0A9J7JUF1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUF1/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. 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mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 15% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. 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"recommended", "evidence": [ { "id": "A0A9J7JUR5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUR5" } ] }, { "name": "LOC100770333", "type": "synonym", "evidence": [ { "id": "XP_003500022", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500022" } ] } ], "protein_names": [ { "name": "Cystatin 10", "type": "synonym", "evidence": [ { "id": "A0A9J7JUR5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUR5/entry#names_and_taxonomy" } ] }, { "name": "cystatin 10", "type": "synonym", "evidence": [ { "id": "XP_003500022", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500022" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 2% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613762.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003500022", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500022" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JUR5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUR5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100770333", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUR5", "locus": {} } ], "crossref": [ { "id": "A0A9J7JUR5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JUR5", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00042", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00042", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100770333", "url": "https://www.ncbi.nlm.nih.gov/gene/100770333", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000010", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000010", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018073", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018073", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046350", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046350", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100770333", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770333", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JUR5", "url": "https://www.orthodb.org/?gene=A0A9J7JUR5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46186", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46186", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46186:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46186:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00031", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00031", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003500022", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500022", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JUR5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUR5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JUR5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUR5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASLRSPSLPLLASLALTFILAVGPVTSTNAEDEQVAVGRVEPADPNDKEVQKAVKFAVKTYNDMNNDLYISRPIRVMSASQQVVAGKNFYLKIELGRTTCSKSQSDLSDCPFYEQPDQQMRVICNFQIYSVSWENKMSVTNFNCPRA", "length": 148, "header": "tr|A0A9J7JUR5-1|A0A9J7JUR5_CRIGR Isoform 1 of Cystatin 10 OS=Cricetulus griseus OX=10029 GN=LOC100770333 PE=3 SV=1 CANONICAL=A0A9J7JUR5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JUR5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUR5/entry", "sequence": { "sequence": "MASLRSPSLPLLASLALTFILAVGPVTSTNAEDEQVAVGRVEPADPNDKEVQKAVKFAVKTYNDMNNDLYISRPIRVMSASQQVVAGKNFYLKIELGRTTCSKSQSDLSDCPFYEQPDQQMRVICNFQIYSVSWENKMSVTNFNCPRA", "length": 148, "header": "tr|A0A9J7JUR5-1|A0A9J7JUR5_CRIGR Isoform 1 of Cystatin 10 OS=Cricetulus griseus OX=10029 GN=LOC100770333 PE=3 SV=1 CANONICAL=A0A9J7JUR5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035296133", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035296133" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JUX9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUX9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC118238346", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUX9", "locus": {} } ], "crossref": [ { "id": "A0A9J7JUX9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JUX9", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd09851", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09851", "database": "CDD", "categories": [ "Protein 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027279757", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027279757" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JV92", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JV92" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Sec14l5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JV92", "locus": {} } ], "crossref": [ { "id": "A0A9J7JV92", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JV92", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00170", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00170", "database": "CDD", "categories": [ "Protein Classification" ] 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"o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JVG1-1", "uniprot_ac": "A0A9J7JVG1", "uniprot_id": "A0A9J7JVG1_CRIGR", "mass": { "chemical_mass": 332822.0, "monoisotopic_mass": 332822.0 }, "refseq": { "ac": "XP_027282616", "name": "LOW QUALITY PROTEIN: zinc finger ZZ-type and EF-hand domain-containing protein 1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282616" }, "gene_names": [ { "name": "Zzef1", "type": "recommended", "evidence": [ { "id": "A0A9J7JVG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVG1" } ] }, { "name": "Zzef1", "type": "synonym", "evidence": [ { "id": "XP_027282616", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282616" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: zinc finger ZZ-type and EF-hand domain-containing protein 1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027282616", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282616" }, { "id": "A0A9J7JVG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVG1/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027282616", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282616" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JVG1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVG1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Zzef1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVG1", "locus": {} } ], "crossref": [ { "id": "cd02249", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02249", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd02343", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02343", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd08667", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08667", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100756655", "url": "https://www.ncbi.nlm.nih.gov/gene/100756655", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000433", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000433", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004939", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004939", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040099", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040099", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041986", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041986", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043145", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043145", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047052", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047052", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100756655", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756655", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JVG1", "url": "https://www.orthodb.org/?gene=A0A9J7JVG1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22772", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22772", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22772:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22772:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00569", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00569", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03256", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03256", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027282616", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282616", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JVG1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVG1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JVG1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVG1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"length": 2970, "header": "tr|A0A9J7JVG1-1|A0A9J7JVG1_CRIGR Isoform 1 of LOW QUALITY PROTEIN: zinc finger ZZ-type and EF-hand domain-containing protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Zzef1 PE=4 SV=1 CANONICAL=A0A9J7JVG1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JVG1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVG1/entry", "sequence": { "sequence": 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This record is derived from a genomic sequence (NW_003613628.1) annotated using gene prediction method: Gnomon. 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indels ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035297078", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035297078" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JVL3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVL3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113833894", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVL3", "locus": {} } ], "crossref": [ { "id": "113833894", "url": "https://www.ncbi.nlm.nih.gov/gene/113833894", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050694", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050694", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113833894", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113833894", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JVL3", "url": "https://www.orthodb.org/?gene=A0A9J7JVL3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14224", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14224", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14224:SF94", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14224:SF94", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27089", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27089", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27091", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27091", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035297078", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035297078", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JVL3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVL3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JVL3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVL3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGARAPPTLVQLALERLLREESLIICALEDLPXEMFPEIFKKAFNDTLTNILXAMVPAWPFPCLPAGGMLLNSDLETLKPLLDGLDVLMTEKVHPRSHRILYSACIAHLLQWASRQKASVNLCGRKLHLSKLPCLRNLYLDEVHILKGCLEEWLRCLKKPLVTLSITSCQLSHSDLDYLSQCLIICDLKHLNLSGVELCFMSXKLLAVLLERIKGTLQTLELEECHLMDHHVNAILPALTQCSELTKINLYHNDISLLVLKKLLHHTAKMRSLTQEEYPAPLECYDNSTILREKFIQLCSELQDTLLVEGHSRQVVFATRECNFCLRCCFYGQEAKFCSC", "length": 340, "header": "tr|A0A9J7JVL3-1|A0A9J7JVL3_CRIGR Isoform 1 of LOW QUALITY PROTEIN: oogenesin-1-like OS=Cricetulus griseus OX=10029 GN=LOC113833894 PE=4 SV=1 CANONICAL=A0A9J7JVL3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JVL3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVL3/entry", "sequence": { "sequence": "MGARAPPTLVQLALERLLREESLIICALEDLPXEMFPEIFKKAFNDTLTNILXAMVPAWPFPCLPAGGMLLNSDLETLKPLLDGLDVLMTEKVHPRSHRILYSACIAHLLQWASRQKASVNLCGRKLHLSKLPCLRNLYLDEVHILKGCLEEWLRCLKKPLVTLSITSCQLSHSDLDYLSQCLIICDLKHLNLSGVELCFMSXKLLAVLLERIKGTLQTLELEECHLMDHHVNAILPALTQCSELTKINLYHNDISLLVLKKLLHHTAKMRSLTQEEYPAPLECYDNSTILREKFIQLCSELQDTLLVEGHSRQVVFATRECNFCLRCCFYGQEAKFCSC", "length": 340, "header": "tr|A0A9J7JVL3-1|A0A9J7JVL3_CRIGR Isoform 1 of LOW QUALITY PROTEIN: oogenesin-1-like OS=Cricetulus griseus OX=10029 GN=LOC113833894 PE=4 SV=1 CANONICAL=A0A9J7JVL3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JVL3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVL3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JVL3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVL3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113833894", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113833894", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JVL3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVL3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 192, "end_pos": 194, "annotation": "n_glycosylation_sequon" }, { "start_pos": 287, "end_pos": 289, "annotation": "n_glycosylation_sequon" }, { "start_pos": 45, "end_pos": 47, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 192, "end_pos": 194 }, { "start_pos": 287, "end_pos": 289 }, { "start_pos": 45, "end_pos": 47 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JVN4-1", "uniprot_ac": "A0A9J7JVN4", "uniprot_id": "A0A9J7JVN4_CRIGR", "mass": { "chemical_mass": 194758.0, "monoisotopic_mass": 194758.0 }, "refseq": { "ac": "XP_027278132", "name": "glutamine and serine-rich protein 1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278132" }, "gene_names": [ { "name": "Qser1", "type": "recommended", "evidence": [ { "id": "A0A9J7JVN4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVN4" } ] }, { "name": "Qser1", "type": "synonym", "evidence": [ { "id": "XP_027278132", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278132" } ] } ], "protein_names": [ { "name": "Glutamine and serine-rich protein 1 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7JVN4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVN4/entry#names_and_taxonomy" } ] }, { "name": "glutamine and serine-rich protein 1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027278132", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278132" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027278132", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278132" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JVN4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVN4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Qser1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVN4", "locus": {} } ], "crossref": [ { "id": "100771261", "url": "https://www.ncbi.nlm.nih.gov/gene/100771261", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR025451", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025451", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052466", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052466", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100771261", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771261", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JVN4", "url": "https://www.orthodb.org/?gene=A0A9J7JVN4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14709", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14709", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14709:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14709:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13926", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13926", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027278132", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278132", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JVN4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVN4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JVN4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVN4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDAHYAPAGFAEPPAPPASAATQPAAPAWAYEARVPTVSSSPSCSGSSPSLKASYQDGHPSQSESDILQRQTFAASHQLPGYATTPQATGMHSSAAAELFVAGPLPTTGALPPPVLPAYQHPATFSNRNFVTTSPLVLQDSSFNTTSNGILNTHDPLLQIKTSQGTVPTALAFERLGSSALSNSIPPQSSTYRSAQESAPHLLQPQFSLLPSTLGGAQQTPQAYSSALFTSSAASIERALLRECSVIKHHQRPSGSQSIQAQLTGSQHPLHNYLSSASIGNFQETSRQSSLSCSSIRDSTQVSNGALQQKTPQVSAELAQSYSSVIPSSGYLPSATKVDGCSTKQPLISTTIPKPQSVIPPVQTLNYSKPLHNQSSVISGQAQIYSTAQLPSLLSVSQSQNYGLVQPHNVPSIVHSQVYRSSRVEKLPSLYKTLTFSGSSQPVTSENQTLSYSSSQQEVLSLVTNENYPAQTRDLSSASQSQNYSSGHSQGLSPVSQTQVSYSSQSQVLSVVSPSESYATGQSLTLTAPSLSYSSASRGQTLPDSSPTPNYISMHSSPNTHTQGSSPPQPQKFLSAVQSPFASSTHGQAIQNSIPSPDPKSYAERKLDSNVYTPSKQDDDFPMQKLQALQSQSSLESSSQRLPDGEVNAPESIYKTSKSDDRYSQNITRNNSHLEDQVVGVALQGSKQEENMVGPVTQLNQTSGQPNNTVNPDVKKATNLMQAPQIRLSTKDLSQQHSLIQKMHEAKVQEQHDQIISASSQLQIPNHALGHSHQALPNTPVLLDSACDLQILQQAGILQASLGSAKASLQVHRVESPQQVVHPFLQMDGHIIQRNGEHPQQQLHPQSSDIMKLDLPEPSKPLQQLATKGPFSETSQHDSKNQFVSLGSICFPEAMLLSDERNILSNVDDILAATAAACGVTPSDFSKSTSNETMQAVEGSDSKSPFQPSLDVRHVNADFNSITATVGKPQNINDISLNGNQVTVNLSSVPSLQSKTILDQQHMETPVQNIPTKAPSAMVGPGHEVQEQSSDPFEKQLTLNHESKEDSEIAVDSALSNNRNQEFVSTSQSISGESAASENDFTLIGDDSGMSGNHRRNTLTLLAMAQPGDVASGKTEDEKQDATYFNLPKKKAKGKGQGKEEEDSNQKQMKKSAQGKRQNPRGTDMYLPYTPASSESCDEGYQHQEKMRQKIKEVEEKQPEVKTGFIASFLDFLKCGPKQQFSTLAVRMPNRTRRSGTQVTRTLYPPSLGKMSPATPAPSALDTGGVSPSEKVDNELKNLEQLSSFSSDEEDPGMCGHDAYKNISAPLTALDATSDKTKKTVSEALSVPTPGASTETAGAAPTSSTPGAVKQDLHLTSSTANTLEKANSTEAPKAIELDSLPSDQFAKGQETVAIEGFTDEENIESGGEGQYRERDEFVVKIEDIETFKEALTIGKEPPAIWKVQKALLQKFVPEIRDGQREFAATNSYLGYFGDAKTKYKRIYVKVIENANKREYVRVCSKKPRNRPSQAIRNAPSKPSSSSKTSDPPVSKTTTTKAPSTKPKVKQLKMKAEPPPKKRKKWKEEFSSSQSESSPEVRSSSSEDEEFNPPAPFVTRFLNTRAMKETFKSYMELLVSIALDPDTMQALEKSNDELLLPHMKKIDGMLNDNRKRLLVNLHLDQPFKNALESFPELTIITRDSKAKSGGSAISKIKMNGKTYNKKTLRTSKTTTKSAQEFAVDPEKIQLYSLYHSLHHYKYHVYLICKNEISSVQKKNEDLGQEEIVQLCMKNVKWVEDLFEKFGELLNHVQQKCS", "length": 1792, "header": "tr|A0A9J7JVN4-1|A0A9J7JVN4_CRIGR Isoform 1 of Glutamine and serine-rich protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Qser1 PE=4 SV=1 CANONICAL=A0A9J7JVN4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JVN4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVN4/entry", "sequence": { "sequence": 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This record is derived from a genomic sequence (NW_003615934.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003513497", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003513497" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JVU5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVU5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100770108", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVU5", "locus": {} } ], "crossref": [ { "id": "A0A9J7JVU5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JVU5", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00190", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00190", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100770108", "url": "https://www.ncbi.nlm.nih.gov/gene/100770108", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001254", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001254", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009003", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009003", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018114", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018114", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100770108", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770108", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JVU5", "url": "https://www.orthodb.org/?gene=A0A9J7JVU5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24252", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24252", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24252:SF17", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24252:SF17", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00089", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00089", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003513497", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003513497", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JVU5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVU5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JVU5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVU5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGAWGKTLVPLLVVAAVVVPQPALQVLSENSEIQEVDLLSAPCGHRIIPARVVGGDDSELGRWPWQGSLRVWGTHLCGATLLNRRWVLTAAHCFQKDSDPYDWSVQFGELTAQPSLWNLQAYSNRYQIEDIFMSPKYKASYPHDIALLKLSSPVNYNNYIQPICLMNSTSKFENRTDCWVTGWGDIGEDQSLPSPYILQEVQVAVINSSMCNHMFSKSSDFRVTIWGDMVCAGNPAGGKDSCFGDSGGPLVCDQDTVWYQVGVVSWGIGCGRPNRPGVYTNISHHYDWIRSTMIRNGMLRPDPAPPLLFLTLAWPSLMLRPA", "length": 322, "header": "tr|A0A9J7JVU5-1|A0A9J7JVU5_CRIGR Isoform 1 of Testisin OS=Cricetulus griseus OX=10029 GN=LOC100770108 PE=4 SV=1 CANONICAL=A0A9J7JVU5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JVU5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVU5/entry", "sequence": { "sequence": "MGAWGKTLVPLLVVAAVVVPQPALQVLSENSEIQEVDLLSAPCGHRIIPARVVGGDDSELGRWPWQGSLRVWGTHLCGATLLNRRWVLTAAHCFQKDSDPYDWSVQFGELTAQPSLWNLQAYSNRYQIEDIFMSPKYKASYPHDIALLKLSSPVNYNNYIQPICLMNSTSKFENRTDCWVTGWGDIGEDQSLPSPYILQEVQVAVINSSMCNHMFSKSSDFRVTIWGDMVCAGNPAGGKDSCFGDSGGPLVCDQDTVWYQVGVVSWGIGCGRPNRPGVYTNISHHYDWIRSTMIRNGMLRPDPAPPLLFLTLAWPSLMLRPA", "length": 322, "header": "tr|A0A9J7JVU5-1|A0A9J7JVU5_CRIGR Isoform 1 of Testisin OS=Cricetulus griseus OX=10029 GN=LOC100770108 PE=4 SV=1 CANONICAL=A0A9J7JVU5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_003613646.1) and transcript sequence (IACG01004539.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_007608875.2. 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This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035297553", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035297553" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JVY4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVY4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Reeld1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVY4", "locus": {} } ], "crossref": [ { "id": "cd08544", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08544", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "113834595", "url": "https://www.ncbi.nlm.nih.gov/gene/113834595", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002861", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002861", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042307", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042307", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051237", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051237", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113834595", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113834595", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JVY4", "url": "https://www.orthodb.org/?gene=A0A9J7JVY4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45828", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45828", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45828:SF51", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45828:SF51", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02014", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02014", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035297553", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035297553", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JVY4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVY4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JVY4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVY4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAEPAVRADRAFRLPAVVHCSQCLRSSVFPTNELLAPKGRCGLGLPVLEVAVRLSGACHFELLLSVAVSVRRSQDFLGFLLQAHTVTADQTVGXFVSTSPHCKLMTCFEEADXSDKTRKRKLFFLRKAPAQPVGDIRFLLSIIKSCFVYWARVELSVVSQPTHSGGHSANVHHTQPRSPALAPWRGQMLLKELYWVLLASCSQAWLSSSASAIVHSGSKHNASFLDNKNNRSVFLTVLEAERSKITSMSGAEDDSAYDDNVPRGEQRVCPSHLHTSGQQPTRQSNPTLQPSLDVHSFERLVSLRDGTLCSFVYIPSTHHREKLMEWTTELDRANHLGVEESDKKKGGGQIYPTQGDLSFDSLETCLHLDKDEQGSQSNSWLPSPWHSQESLGCIKALCWEYRVEEGVMGYLSKTNLRPGMRLQGTSAHLETQLRTPQLLILICLSTTVGVSLAAGXSEPTADAIARNDEGEXYMSKRQVNAYILVQVESS", "length": 491, "header": "tr|A0A9J7JVY4-1|A0A9J7JVY4_CRIGR Isoform 1 of LOW QUALITY PROTEIN: reelin domain-containing protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Reeld1 PE=4 SV=1 CANONICAL=A0A9J7JVY4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JVY4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVY4/entry", "sequence": { "sequence": "MAAEPAVRADRAFRLPAVVHCSQCLRSSVFPTNELLAPKGRCGLGLPVLEVAVRLSGACHFELLLSVAVSVRRSQDFLGFLLQAHTVTADQTVGXFVSTSPHCKLMTCFEEADXSDKTRKRKLFFLRKAPAQPVGDIRFLLSIIKSCFVYWARVELSVVSQPTHSGGHSANVHHTQPRSPALAPWRGQMLLKELYWVLLASCSQAWLSSSASAIVHSGSKHNASFLDNKNNRSVFLTVLEAERSKITSMSGAEDDSAYDDNVPRGEQRVCPSHLHTSGQQPTRQSNPTLQPSLDVHSFERLVSLRDGTLCSFVYIPSTHHREKLMEWTTELDRANHLGVEESDKKKGGGQIYPTQGDLSFDSLETCLHLDKDEQGSQSNSWLPSPWHSQESLGCIKALCWEYRVEEGVMGYLSKTNLRPGMRLQGTSAHLETQLRTPQLLILICLSTTVGVSLAAGXSEPTADAIARNDEGEXYMSKRQVNAYILVQVESS", "length": 491, "header": "tr|A0A9J7JVY4-1|A0A9J7JVY4_CRIGR Isoform 1 of LOW QUALITY PROTEIN: reelin domain-containing protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Reeld1 PE=4 SV=1 CANONICAL=A0A9J7JVY4-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 354, "start_aa": "Thr", "end_pos": 354, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr354", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JVY4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVY4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JVY4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVY4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113834595", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113834595", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JVY4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVY4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 222, "end_pos": 224, "annotation": "n_glycosylation_sequon" }, { "start_pos": 231, "end_pos": 233, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JVY4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVY4" }, { "id": "PF02014", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02014" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reelin", "eco_id": "ECO_0000259", "start_pos": 67, "end_pos": 164, "start_aa": "Val", "end_aa": "His", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 354 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 222, "end_pos": 224 }, { "start_pos": 231, "end_pos": 233 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JVY9-1", "uniprot_ac": "A0A9J7JVY9", "uniprot_id": "A0A9J7JVY9_CRIGR", "mass": { "chemical_mass": 63118.0, "monoisotopic_mass": 63118.0 }, "refseq": { "ac": "XP_035297571", "name": "carboxylesterase 1F isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035297571" }, "gene_names": [ { "name": "LOC100766339", "type": "recommended", "evidence": [ { "id": "A0A9J7JVY9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVY9" } ] }, { "name": "LOC100766339", "type": "synonym", "evidence": [ { "id": "XP_035297571", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035297571" } ] } ], "protein_names": [ { "name": "Carboxylic ester hydrolase", "type": "recommended", "evidence": [ { "id": "A0A9J7JVY9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVY9/entry#names_and_taxonomy" } ] }, { "name": "3.1.1.-", "type": "synonym", "evidence": [ { "id": "A0A9J7JVY9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVY9/entry#names_and_taxonomy" } ] }, { "name": "carboxylesterase 1F isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035297571", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035297571" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 2% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035297571", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035297571" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JVY9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVY9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100766339", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVY9", "locus": {} } ], "crossref": [ { "id": "A0A9J7JVY9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JVY9", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00312", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00312", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100766339", "url": "https://www.ncbi.nlm.nih.gov/gene/100766339", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002018", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002018", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019819", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019819", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019826", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019826", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050309", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050309", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100766339", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766339", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JVY9", "url": "https://www.orthodb.org/?gene=A0A9J7JVY9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11559", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11559", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00135", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00135", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035297571", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035297571", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JVY9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVY9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JVY9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVY9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCLENRETHIESRSDLVTLMCSFTSPCSTGHPSSPPVVNTVHGKVLGRYISLEGFSQPVAVFLGVPFAKPPLGSLRFAPPQPAEPWSFVKNATSYPPMCSQDAVRGQKINDLITNRKEKIHLEFSEDCLYLNIYTPANLTRSSRLPVMVWIHGGGLTFGGASTYDGLALSAHENVVVVAIQYRLSIWGFFSTGDEHSQGNWGHLDQVAALHWVQDNIAYFGGDPGSVTIFGESAGGFSVSVLVLSPLAKNLFHRAISESGVIFVPSLFTKNPRTATEKVAVTAGCKTTTSAVIVHCLRQKTEDELLEVMQKMNLSNFNALLNTKEDHAFVPTVLDGVLLPKAPEEILAEKNFNTVPYIVGINKQEFGWLLPTMMRFPQPDDKKMAIALLQKFAPYFGMNEDVVPVAIEKYVRGSNEPLKIRDGVLELLGDLTFGVPSVIVSRGHRDTGASTYMYEFQYHPSFSSHMRPKNVVGDHGDEVYSVFGAPILRDGASEEETNLSKMMMKFWANFARNGNPNGEGLPHWPEYDQKEGYLQIGATTQQTQRLKGEEVAFWTEILAKKHPKPEHNEL", "length": 570, "header": "tr|A0A9J7JVY9-1|A0A9J7JVY9_CRIGR Isoform 1 of Carboxylic ester hydrolase OS=Cricetulus griseus OX=10029 GN=LOC100766339 PE=3 SV=1 CANONICAL=A0A9J7JVY9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JVY9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVY9/entry", "sequence": { "sequence": "MCLENRETHIESRSDLVTLMCSFTSPCSTGHPSSPPVVNTVHGKVLGRYISLEGFSQPVAVFLGVPFAKPPLGSLRFAPPQPAEPWSFVKNATSYPPMCSQDAVRGQKINDLITNRKEKIHLEFSEDCLYLNIYTPANLTRSSRLPVMVWIHGGGLTFGGASTYDGLALSAHENVVVVAIQYRLSIWGFFSTGDEHSQGNWGHLDQVAALHWVQDNIAYFGGDPGSVTIFGESAGGFSVSVLVLSPLAKNLFHRAISESGVIFVPSLFTKNPRTATEKVAVTAGCKTTTSAVIVHCLRQKTEDELLEVMQKMNLSNFNALLNTKEDHAFVPTVLDGVLLPKAPEEILAEKNFNTVPYIVGINKQEFGWLLPTMMRFPQPDDKKMAIALLQKFAPYFGMNEDVVPVAIEKYVRGSNEPLKIRDGVLELLGDLTFGVPSVIVSRGHRDTGASTYMYEFQYHPSFSSHMRPKNVVGDHGDEVYSVFGAPILRDGASEEETNLSKMMMKFWANFARNGNPNGEGLPHWPEYDQKEGYLQIGATTQQTQRLKGEEVAFWTEILAKKHPKPEHNEL", "length": 570, "header": "tr|A0A9J7JVY9-1|A0A9J7JVY9_CRIGR Isoform 1 of Carboxylic ester hydrolase OS=Cricetulus griseus OX=10029 GN=LOC100766339 PE=3 SV=1 CANONICAL=A0A9J7JVY9-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", 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griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614071.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003504580", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003504580" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JWA8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWA8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Spata32", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWA8", "locus": {} } ], "crossref": [ { "id": "A0A9J7JWA8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JWA8", "database": "AlphaFoldDB", "categories": [] }, { "id": "100766016", "url": "https://www.ncbi.nlm.nih.gov/gene/100766016", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029297", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029297", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100766016", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766016", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JWA8", "url": "https://www.orthodb.org/?gene=A0A9J7JWA8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR37338", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37338", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR37338:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37338:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15310", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15310", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003504580", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003504580", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JWA8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWA8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JWA8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWA8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGVTGTSSFPCCGKNDVDIVDIMERTSDQQQPQSHKDKEDEEEAPAAELPKLESLPEVQPNPGPVPQLEEMAIMMPSKPTPDAEGDYITESQEQQIYSIESLKPYKEELIERPWSFKTSSSSMEEELVCTSTHFRSIRVQTSKHLFWSNKLTQASELSFQKVKSPREKYVSISQVLTECAPRPLGSSRSCTSLPAALGLADLINFASSLAVASSSSMNMPNLENIIKGSSEKSQETSREFCQPGQSVKFSQTTQITQMSSEKQEKKPENMTTHKSWTPETRNVACSYINFSKTGLKNHTIQGEVKFVQAPTTSPQLQGAKEDSVPGTKKGNPLLLKILFKLSSPHPQRND", "length": 350, "header": "tr|A0A9J7JWA8-1|A0A9J7JWA8_CRIGR Isoform 1 of Spermatogenesis-associated protein 32 OS=Cricetulus griseus OX=10029 GN=Spata32 PE=4 SV=1 CANONICAL=A0A9J7JWA8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JWA8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWA8/entry", "sequence": { "sequence": "MGVTGTSSFPCCGKNDVDIVDIMERTSDQQQPQSHKDKEDEEEAPAAELPKLESLPEVQPNPGPVPQLEEMAIMMPSKPTPDAEGDYITESQEQQIYSIESLKPYKEELIERPWSFKTSSSSMEEELVCTSTHFRSIRVQTSKHLFWSNKLTQASELSFQKVKSPREKYVSISQVLTECAPRPLGSSRSCTSLPAALGLADLINFASSLAVASSSSMNMPNLENIIKGSSEKSQETSREFCQPGQSVKFSQTTQITQMSSEKQEKKPENMTTHKSWTPETRNVACSYINFSKTGLKNHTIQGEVKFVQAPTTSPQLQGAKEDSVPGTKKGNPLLLKILFKLSSPHPQRND", "length": 350, "header": "tr|A0A9J7JWA8-1|A0A9J7JWA8_CRIGR Isoform 1 of Spermatogenesis-associated protein 32 OS=Cricetulus griseus OX=10029 GN=Spata32 PE=4 SV=1 CANONICAL=A0A9J7JWA8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_003614550.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 27, 2016 this sequence version replaced XP_007647322.1. 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This record is predicted by automated computational analysis. 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Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035298489", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035298489" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JWM8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWM8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Adgrg3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWM8", "locus": {} } ], "crossref": [ { "id": "A0A9J7JWM8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JWM8", "database": "AlphaFoldDB", "categories": [] }, { "id": "100764587", "url": "https://www.ncbi.nlm.nih.gov/gene/100764587", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000203", 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Classification" ] }, { "id": "IPR051923", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051923", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100767663", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767663", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JY68", "url": "https://www.orthodb.org/?gene=A0A9J7JY68", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12631", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12631", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12631:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12631:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01229", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01229", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21200", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21200", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027281768", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281768", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MT09", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MT09", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MT09-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MT09-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GE11", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GE11", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GE11-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GE11-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JY68", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JY68", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JY68-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JY68-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRPPQPPSATLAFLAAFLAKALALAETPYLVRVDAARPLRPLLPFWRSTGFCPPLPHDQAYQYDLSWDQQLNLAYIGAVPHSGIEQVRIHWLLDLITARRRTRLAGASETGLWEYCAGLAVKLFTPQIAESWVSPAKRVLPERLIRKSSAQGLIYNFTYLDVFLDLLMKNQLLPGFELMGSPSGHFTDFEDKQQVFEWKNLVSLLARRYIDRYGLTHVSKWNFETWNEPDHHDFDNVSMTTQGFLNYYDACSEGLHDASPMLRLGGPGDSFHPLPKSPLCWSLLRHCANGTNFFTGEVGVRLDYISLHKKGAGSSMYILEQEMAVVEQIQQLFPEFKDTPIYNDEADPLVGWSLPQPWRADVTYAALVVKVIAQHQNLLFANSSSSMHYVLLSNDNAFLSYHPHPFSQRTLTARFQVNNTCPPHVQLLRKPVLTVMGLMALLDGEQLWAEVSQAGAVLDSNHTVGVLASTHRPEVSSEAWRTTVLIYTSDDTHAHLNGSIPVTLHLRGVPPGLGLVYVVLYLDNQLCSPSSEWQHMGQPVFPSAEQFRRMRMVEDPVVEAPRPFPAGGRLTLHRKLSLPSLLLVHVCTRPLKPPGQVSRLRALPLTHGQLVLVWSDEHVGSKCLWTYEIQFSQKGEEYAPISRRPSTFNLFVFSPDTAVVSGSYRVRALDYWARPGPFSDPVTYLDVPAS", "length": 690, "header": "tr|A0A9J7JY68-1|A0A9J7JY68_CRIGR Isoform 1 of Alpha-L-iduronidase isoform X2 OS=Cricetulus griseus OX=10029 GN=Idua PE=3 SV=1 CANONICAL=A0A9J7JY68-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MT09-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MT09/entry", "sequence": { "sequence": "MRPPQPPSATLAFLAAFLAKALALAETPYLVRVDAARPLRPLLPFWRSTGFCPPLPHDQAYQYDLSWDQQLNLAYIGAVPHSGIEQVRIHWLLDLITARKSSAQGLIYNFTYLDVFLDLLMKNQLLPGFELMGSPSGHFTDFEDKQQVFEWKNLVSLLARRYIDRYGLTHVSKWNFETWNEPDHHDFDNVSMTTQGFLNYYDACSEGLHDASPMLRLGGPGDSFHPLPKSPLCWSLLRHCANGTNFFTGEVGVRLDYISLHKKGAGSSMYILEQEMAVVEQIQQLFPEFKDTPIYNDEADPLVGWSLPQPWRADVTYAALVVKVIAQHQNLLFANSSSSMHYVLLSNDNAFLSYHPHPFSQRTLTARFQVNNTCPPHVQLLRKPVLTVMGLMALLDGEQLWAEVSQAGAVLDSNHTVGVLASTHRPEVSSEAWRTTVLIYTSDDTHAHLNGSIPVTLHLRGVPPGLGLVYVVLYLDNQLCSPSSEWQHMGQPVFPSAEQFRRMRMVEDPVVEAPRPFPAGGRLTLHRKLSLPSLLLVHVCTRPLKPPGQVSRLRALPLTHGQLVLVWSDEHVGSKCLWTYEIQFSQKGEEYAPISRRPSTFNLFVFSPDTAVVSGSYRVRALDYWARPGPFSDPVTYLDVPAS", "length": 643, "header": "tr|A0A8C2MT09-1|A0A9J7JY68_CRIGR Computationally mapped isoform of Alpha-L-iduronidase isoform X2 OS=Cricetulus griseus OX=10029 GN=Idua PE=3 SV=1 CANONICAL=A0A9J7JY68-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GE11-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GE11/entry", "sequence": { "sequence": "MRPPQPPSATLAFLAAFLAKALALAETPYLVRVDAARPLRPLLPFWRSTGFCPPLPHDQAYQYDLSWDQQLNLAYIGAVPHSGIEQVRIHWLLDLITARWVMLRKSSAQGLIYNFTYLDVFLDLLMKNQLLPGFELMGSPSGHFTDFEDKQQVFEWKNLVSLLARRYIDRYGLTHVSKWNFETWNEPDHHDFDNVSMTTQGFLNYYDACSEGLHDASPMLRLGGPGDSFHPLPKSPLCWSLLRHCANGTNFFTGEVGVRLDYISLHKKGAGSSMYILEQEMAVVEQIQQLFPEFKDTPIYNDEADPLVGWSLPQPWRADVTYAALVVKVIAQHQNLLFANSSSSMHYVLLSNDNAFLSYHPHPFSQRTLTARFQVNNTCPPHVQLLRKPVLTVMGLMALLDGEQLWAEVSQAGAVLDSNHTVGVLASTHRPEVSSEAWRTTVLIYTSDDTHAHLNGSIPVTLHLRGVPPGLGLVYVVLYLDNQLCSPSSEWQHMGQPVFPSAEQFRRMRMVEDPVVEAPRPFPAGGRLTLHRKLSLPSLLLVHVCTRPLKPPGQVSRLRALPLTHGQLVLVWSDEHVGSKCLWTYEIQFSQKGEEYAPISRRPSTFNLFVFSPDTAVVSGSYRVRALDYWARPGPFSDPVTYLDVPAS", "length": 648, "header": "tr|A0A9J7GE11-1|A0A9J7JY68_CRIGR Computationally mapped isoform of Alpha-L-iduronidase isoform X2 OS=Cricetulus griseus OX=10029 GN=Idua PE=3 SV=1 CANONICAL=A0A9J7JY68-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JY68-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JY68/entry", "sequence": { "sequence": "MRPPQPPSATLAFLAAFLAKALALAETPYLVRVDAARPLRPLLPFWRSTGFCPPLPHDQAYQYDLSWDQQLNLAYIGAVPHSGIEQVRIHWLLDLITARRRTRLAGASETGLWEYCAGLAVKLFTPQIAESWVSPAKRVLPERLIRKSSAQGLIYNFTYLDVFLDLLMKNQLLPGFELMGSPSGHFTDFEDKQQVFEWKNLVSLLARRYIDRYGLTHVSKWNFETWNEPDHHDFDNVSMTTQGFLNYYDACSEGLHDASPMLRLGGPGDSFHPLPKSPLCWSLLRHCANGTNFFTGEVGVRLDYISLHKKGAGSSMYILEQEMAVVEQIQQLFPEFKDTPIYNDEADPLVGWSLPQPWRADVTYAALVVKVIAQHQNLLFANSSSSMHYVLLSNDNAFLSYHPHPFSQRTLTARFQVNNTCPPHVQLLRKPVLTVMGLMALLDGEQLWAEVSQAGAVLDSNHTVGVLASTHRPEVSSEAWRTTVLIYTSDDTHAHLNGSIPVTLHLRGVPPGLGLVYVVLYLDNQLCSPSSEWQHMGQPVFPSAEQFRRMRMVEDPVVEAPRPFPAGGRLTLHRKLSLPSLLLVHVCTRPLKPPGQVSRLRALPLTHGQLVLVWSDEHVGSKCLWTYEIQFSQKGEEYAPISRRPSTFNLFVFSPDTAVVSGSYRVRALDYWARPGPFSDPVTYLDVPAS", "length": 690, "header": "tr|A0A9J7JY68-1|A0A9J7JY68_CRIGR Isoform 1 of Alpha-L-iduronidase isoform X2 OS=Cricetulus griseus OX=10029 GN=Idua PE=3 SV=1 CANONICAL=A0A9J7JY68-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [ "enzyme" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MT09", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MT09" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MT09", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MT09" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100767663", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767663", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "L-iduronidase activity", "id": "GO:0003940", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003940", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JY68", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JY68" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "dermatan sulfate proteoglycan catabolic process", "id": "GO:0030209", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030209", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JY68", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JY68" } ], "pmid": "" }, { "name": "carbohydrate metabolic process", "id": "GO:0005975", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005975", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JY68", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JY68" } ], "pmid": "" }, { "name": "glycosaminoglycan catabolic process", "id": "GO:0006027", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006027", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JY68", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JY68" } ], "pmid": "" }, { "name": "heparan sulfate proteoglycan catabolic process", "id": "GO:0030200", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030200", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JY68", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JY68" } ], "pmid": "" }, { "name": "heparin proteoglycan catabolic process", "id": "GO:0030211", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030211", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JY68", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JY68" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "lysosomal lumen", "id": "GO:0043202", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043202", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JY68", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JY68" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 156, "end_pos": 158, "annotation": "n_glycosylation_sequon" }, { "start_pos": 236, "end_pos": 238, "annotation": "n_glycosylation_sequon" }, { "start_pos": 289, "end_pos": 291, "annotation": "n_glycosylation_sequon" }, { "start_pos": 382, "end_pos": 384, "annotation": "n_glycosylation_sequon" }, { "start_pos": 418, "end_pos": 420, "annotation": "n_glycosylation_sequon" }, { "start_pos": 461, "end_pos": 463, "annotation": "n_glycosylation_sequon" }, { "start_pos": 497, "end_pos": 499, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JY68", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JY68" }, { "id": "PF21200", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21200" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Alpha-L-iduronidase C-terminal", "eco_id": "ECO_0000259", "start_pos": 599, "end_pos": 685, "start_aa": "Arg", "end_aa": "Leu", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7JY68", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JY68" }, { "id": "PF01229", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01229" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Glycosyl hydrolases family 39 N-terminal catalytic", "eco_id": "ECO_0000259", "start_pos": 29, "end_pos": 101, "start_aa": "Tyr", "end_aa": "Arg", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [ { "ec_number": "3.2.1.76", "ec_name": "Hydrolysis of unsulfated alpha-L-iduronosidic linkages in dermatan sulfate.", "evidence": [ { "id": "3.2.1.76", "database": "BRENDA Enzymes", "url": "https://www.brenda-enzymes.org/enzyme.php?ecno=3.2.1.76" } ] } ], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 156, "end_pos": 158 }, { "start_pos": 236, "end_pos": 238 }, { "start_pos": 289, "end_pos": 291 }, { "start_pos": 382, "end_pos": 384 }, { "start_pos": 418, "end_pos": 420 }, { 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"https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00315", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100773025", "url": "https://www.ncbi.nlm.nih.gov/gene/100773025", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001525", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001525", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029063", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029063", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031303", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031303", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050750", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050750", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100773025", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773025", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HYAFKYA", "url": "https://omabrowser.org/oma/group/HYAFKYA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7K7C6", "url": "https://www.orthodb.org/?gene=A0A9J7K7C6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3HHR4", "url": "https://www.orthodb.org/?gene=G3HHR4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46098", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46098", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46098:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46098:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00145", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00145", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035298703", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035298703", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "42956", "url": "https://www.rhea-db.org/rhea/42956", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GUJ1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GUJ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GUJ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GUJ1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GVK6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GVK6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GVK6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GVK6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GWU6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GWU6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GWU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GWU6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GX73", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GX73", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GX73-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GX73-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K7C6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7C6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K7C6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7C6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HHR4", "url": "https://www.uniprot.org/uniprotkb/G3HHR4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HHR4-1", "url": "https://www.uniprot.org/uniprotkb/G3HHR4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPLRVLELYSGIGGMHHALRESCIPAHVVAAIDVNTVANEVYKHNFPHTHLLAKTIEGISLEEFDKLSFNMILMSPPCQPFTRIGLQGDMTDPRTNSFLYILDILPRLQKLPKYILLENVKGFEVSSTRGLLIQTIEACGFQHQEFLLSPSSLGIPNSRLRYFLIAKLQSEPLPFQAPDQILMEFPKIATIQTQSYAVVAENTLRVKRPEPSTCFDSSSTQYSRKDSILFKLETAEEIDRKHQQDNDLSVQMLKDFLEDEDTSQYFLPPKLLLRYALLLDIVKPTSRRSMCFTKGYGSYIEGTGSVLQTAEDVQIENVFKSLNDLPPEEKIAKLSTLKLRYFTPREIANLQGFPPEFVDQVCFLKTQVVLETHDPPASALQYWITGCTSRLS", "length": 393, "header": "tr|A0A9J7K7C6-1|A0A9J7K7C6_CRIGR Isoform 1 of tRNA (Cytosine(38)-C(5))-methyltransferase isoform X1 OS=Cricetulus griseus OX=10029 GN=Trdmt1 PE=3 SV=1 CANONICAL=A0A9J7K7C6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GUJ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GUJ1/entry", "sequence": { "sequence": "MILMSPPCQPFTRIGLQGDMTDPRTNSFLYILDILPRLQKLPKYILLENVKGFEVSSTRGLLIQTIEACGFQHQEFLLSPSSLGIPNSRLRYFLIAKLQSEPLPFQAPDQILMEFPKIATIQTQSYAVVAENTLRVKRPEPSTCFDSSSTQYSRKDSILFKLETAEEIDRKHQQDNDLSVQMLKDFLEDEDTSQYFLPPKLLLRYALLLDIVKPTSRRSMCFTKGYGSYIEGTGSVLQTAEDVQIENVFKSLNDLPPEEKIAKLSTLKLRYFTPREIANLQGFPPEFVDQVCFLKTQVVLETHDPPASALQYWITGCTSRLS", "length": 322, "header": "tr|A0A9J7GUJ1-1|A0A9J7GUJ1_CRIGR Computationally mapped isoform of tRNA (Cytosine(38)-C(5))-methyltransferase isoform X5 OS=Cricetulus griseus OX=10029 GN=Trdmt1 PE=3 SV=1 CANONICAL=A0A9J7K7C6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GVK6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GVK6/entry", "sequence": { "sequence": "MEPLRVLELYSGIGGMHHALRESCIPAHVVAAIDVNTVANEVYKHNFPHTHLLAKTIEGISLEEFDKLSFNMILMSPPCQPFTRIGLQGDMTDPRTNSFLYILDILPRLQKLPKYILLENVKGFEVSSTRGLLIQTIEACGFQHQEFLLSPSSLGIPNSRLRYFLIAKLQSEPLPFQAPDQILMEFPKIATIQTQSYAVVAENTLRVKRPEPSTCFDSSSTQYSRKDSILFKLETAEEIDRKHQQDNDLSVQMLKDFLEDEDTSQYFLPPKLLLRYALLLDIVKPTSRRSMCFTKGYGSYIEGTGSVLQTAEDVQVPY", "length": 318, "header": "tr|A0A9J7GVK6-1|A0A9J7GVK6_CRIGR Computationally mapped isoform of tRNA (Cytosine(38)-C(5))-methyltransferase isoform X6 OS=Cricetulus griseus OX=10029 GN=Trdmt1 PE=3 SV=1 CANONICAL=A0A9J7K7C6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GWU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GWU6/entry", "sequence": { "sequence": "MEPLRVLELYSGIGGMHHALRESCIPAHVVAAIDVNTVANEVYKHNFPHTHLLAKTIEGISLEEFDKLSFNMILMSPPCQPFTRIGLQGDMTDPRTNSFLYILDILPRLQKLPKYILLENVKGFEVSSTRGLLIQTIEACGFQHQEFLLSPSSLGIPNSRLRYFLIAKLQSEPLPFQAPDQILMEFPKIATIQTQSYAVVAENTLRVKRPEPSTCFDSSSTQYSRKDSILFKLETAEEIDRKHQQDNDLSVQMLKDFLEDEDTSQYFLPPKLLLRYALLLDIVKPTSRRSMCFTKGYGSYIEGTGSVLQTAEDVQIENVFKSLNDLPPEEKIAKLSTLKLRYFTPREIANLQGFPPEFVTLNN", "length": 363, "header": "tr|A0A9J7GWU6-1|A0A9J7GWU6_CRIGR Computationally mapped isoform of tRNA (Cytosine(38)-C(5))-methyltransferase isoform X4 OS=Cricetulus griseus OX=10029 GN=Trdmt1 PE=3 SV=1 CANONICAL=A0A9J7K7C6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GX73-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GX73/entry", "sequence": { "sequence": "MEPLRVLELYSGIGGMHHALRESCIPAHVVAAIDVNTVANEVYKHNFPHTHLLAKTIEGISLEEFDKLSFNMILMSPPCQPFTRIGLQGDMTDPRTNSFLYILDILPRLQKLPKYILLENVKGFEVSSTRGLLIQTIEACGFQHQEFLLSPSSILMEFPKIATIQTQSYAVVAENTLRVKRPEPSTCFDSSSTQYSRKDSILFKLETAEEIDRKHQQDNDLSVQMLKDFLEDEDTSQYFLPPKLLLRYALLLDIVKPTSRRSMCFTKGYGSYIEGTGSVLQTAEDVQIENVFKSLNDLPPEEKIAKLSTLKLRYFTPREIANLQGFPPEFVDQVCFLKTQVVLETHDPPASALQYWITGCTSRLS", "length": 365, "header": "tr|A0A9J7GX73-1|A0A9J7GX73_CRIGR Computationally mapped isoform of tRNA (Cytosine(38)-C(5))-methyltransferase isoform X3 OS=Cricetulus griseus OX=10029 GN=Trdmt1 PE=3 SV=1 CANONICAL=A0A9J7K7C6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K7C6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7C6/entry", "sequence": { "sequence": "MEPLRVLELYSGIGGMHHALRESCIPAHVVAAIDVNTVANEVYKHNFPHTHLLAKTIEGISLEEFDKLSFNMILMSPPCQPFTRIGLQGDMTDPRTNSFLYILDILPRLQKLPKYILLENVKGFEVSSTRGLLIQTIEACGFQHQEFLLSPSSLGIPNSRLRYFLIAKLQSEPLPFQAPDQILMEFPKIATIQTQSYAVVAENTLRVKRPEPSTCFDSSSTQYSRKDSILFKLETAEEIDRKHQQDNDLSVQMLKDFLEDEDTSQYFLPPKLLLRYALLLDIVKPTSRRSMCFTKGYGSYIEGTGSVLQTAEDVQIENVFKSLNDLPPEEKIAKLSTLKLRYFTPREIANLQGFPPEFVDQVCFLKTQVVLETHDPPASALQYWITGCTSRLS", "length": 393, "header": "tr|A0A9J7K7C6-1|A0A9J7K7C6_CRIGR Isoform 1 of tRNA (Cytosine(38)-C(5))-methyltransferase isoform X1 OS=Cricetulus griseus OX=10029 GN=Trdmt1 PE=3 SV=1 CANONICAL=A0A9J7K7C6-1" }, "locus": {} }, { "isoform_ac": "G3HHR4-1", "url": "https://www.uniprot.org/uniprotkb/G3HHR4/entry", "sequence": { "sequence": "MEPLRVLELYSGIGGMHHALRESCIPAHVVAAIDVNTVANEVYKHNFPHTHLLAKTIEGISLEEFDKLSFNMILMSPPCQPFTRIGLQGDMTDPRTNSFLYILDILPRLQKLPKYILLENVKGFEVSSTRGLLIQTIEACGFQHQEFLLSPSSLGIPNSRLRYFLIAKLQSEPLPFQAPDQILMEFPKIATIQTQSYAVVAENTLRVKRPEPSTCFDSSSTQYSRKDSILFKLETAEEIDRKHQQDNDLSVQMLKDFLEDEDTSQYFLPPKLLLRYALLLDIVKPTSRRSMCFTKGYGSYIEGTGSVLQTAEDVQIENVFKSLNDLPPEEKIAKLSTLKLRYFTPREIANLQGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLITILCE", "length": 391, "header": "tr|G3HHR4-1|A0A9J7K7C6_CRIGR Computationally mapped isoform of tRNA (Cytosine(38)-C(5))-methyltransferase isoform X1 OS=Cricetulus griseus OX=10029 GN=Trdmt1 PE=3 SV=1 CANONICAL=A0A9J7K7C6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [ "enzyme" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HHR4", "url": "https://www.uniprot.org/uniprotkb/G3HHR4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HHR4", "url": "https://www.uniprot.org/uniprotkb/G3HHR4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100773025", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773025", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XGQ3-1", "protein_name": "tRNA aspartic acid methyltransferase 1", "gene_name": "TRDMT1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAALRVLELYSGIGGMHQALKESCICAEVVAAVDVNTLANEVYKHNFPSTPLWAKTIEGITLKEFDRLSFDMILMSPPCQPFTRIGLQGDVSDPRTKSFLYILDILPRLQKCPKYLLLENVKGFESSSARNELLRTLETCGFKYQEFLLSPTCLGIPNSRLRYFLIAKLHQEPFFFHVPGQILTRLPDQNLEELSKDKVVDKTGSSFPSGEKSLDSNTSPDCSSKKGPLPKGAFLFKLETAEQMVRKHRQDNDPSIQMLEDFLEEENEEMSQYFLAPKSLVRYAFLLDIVKPTCRRSTCFTKGYGHYVEGTGSVLQTAVDVELESVFKHIENLTEEEKLMKLSTLKLRYFTPREIANLHGFPPEFGMCSQSTHFYFILQLCQCSFLLGVMCAFYFASFFLTILTIQHFCLVFTNWLTFL", "length": 419 }, "evidence": [ { "id": "A0A9J7K7C6", "url": "https://omabrowser.org/oma/group/A0A9J7K7C6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F4JWT7-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase 2", "gene_name": "DNMT2", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAEQELQRINEKKPWQVLEFYSGIGGMRYSLMASGIVSEVVEAFEINDSANDVYQHNFKHRPYQGNIQSLTAADLDKYNADAWLLSPPCQPYTRQGLQKHSGDARAFSFLRILELIPHTTKPPQMLFVENVVGFETSDTHMEMIGTLTKLDYVTQEFILSPLQFGVPYSRPRYFCLAKRKPLPFKSQHSNNKLLWSPDPLYGRDDQVEFGKCQAEEGLDKLLEFCKPVEKFLELAAHVDGEPSSVDDSENGSKDCCGQEGDSVPDSVHQYLVPVSLIERWGNAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLATVQPKIKGKESCLKEQRLRYFTPREVANFHSFPEDFEFPKHISLRQRYAMLGNSLSVAVVAPLLRYLFDS", "length": 383 }, "evidence": [ { "id": "A0A9J7K7C6", "url": "https://omabrowser.org/oma/group/A0A9J7K7C6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "I3LF34-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "TRDMT1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEPLRVLELYSGIGGMHQALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGVTLEEFDRLSFNMVLMSPPCQPFTRIGLQGDVTDPRTNSFLYILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEPFPFQAPGQVLMEFPQMESEHPQKHAIDAQSKIEEKKIERNICLDSSAQCSGKEAILFKLETAGEIDRKHQQDSDLSVQMLKGFLEDDIDMNSYFLPPKSLLRYALLLDIVKPTSRRSMCFTKGYGRYIEGTGSVLQTSEDVQIENIYKSLTSLSPEEKIMKLLMLKLRFFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIKILYE", "length": 391 }, "evidence": [ { "id": "A0A9J7K7C6", "url": "https://omabrowser.org/oma/group/A0A9J7K7C6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "O14717-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "TRDMT1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEPLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEPLPFQAPGQVLMEFPKIESVHPQKYAMDVENKIQEKNVEPNISFDGSIQCSGKDAILFKLETAEEIHRKNQQDSDLSVKMLKDFLEDDTDVNQYLLPPKSLLRYALLLDIVQPTCRRSVCFTKGYGSYIEGTGSVLQTAEDVQVENIYKSLTNLSQEEQITKLLILKLRYFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIKILYE", "length": 391 }, "evidence": [ { "id": "A0A9J7K7C6", "url": "https://omabrowser.org/oma/group/A0A9J7K7C6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "O55055-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "Trdmt1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEPLRVLELYSGIGGMHHALRESHIPAHVVAAIDVNTVANEVYKHNFPHTHLLSKTIEGISLEDFDKLSFNMILMSPPCQPFTRIGLQGDMTDPRTTSFLYILDILPRLQKLPKYILLENVKGFEVSSTRGLLIQTIEACGFQYQEFLLSPSSLGIPNSRLRYFLIAKLQSEPFPFQAPGQILMEFPKIVTVEPQKYAVVEESQPRVQRTGPRICAESSSTQSSGKDTILFKLETVEERDRKHQQDSDLSVQMLKDFLEDGDTDEYLLPPKLLLRYALLLDIVKPTSRRSMCFTKGYGSYIEGTGSVLQAAEDAQIENIYKSLPDLPPEEKIAKLSMLKLRYFTPKEIANLQGFPPEFGFPEKTTVKQRYRLLGNSLNVHVVAKLLTVLCEGFGNASESCHKMPLILDSNSKILS", "length": 415 }, "evidence": [ { "id": "A0A9J7K7C6", "url": "https://omabrowser.org/oma/group/A0A9J7K7C6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q4G073-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "Trdmt1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEPLRVLELYSGIGGMHHALRESRVPAHVVAAIDVSTVANEVYKHNFPHTHLLAKTIEGISLEEFDKLSFNMILMSPPCQPFTRIGLQGDMSDRRTNSFLYILDILPRLQKLPKYILLENVKGFEVSSTRGLLIQTMEACGFQYQEFLLSPSSLGIPNSRLRYFLIAKLQSEPLCFQAPGQILMEFPNSGTVQPQEYAVVEEGKLRVRTREPDVCLDSSSTQCSGQDSILFKHETAADIDRKRQQDSDLSVQMLKGFLEDGDTAQYLLPAKSLLRYALLLDIVKPTSRRSMCFTKGYGSYIEGTGSVLQTAEDVQIENIYKSLPDLPPEEKIAKLSMLKLRYFTPKEIANLLGFPPEFGFPEKTTVKQRYRLLGNSLNVHVVSKLLTVLCE", "length": 391 }, "evidence": [ { "id": "A0A9J7K7C6", "url": "https://omabrowser.org/oma/group/A0A9J7K7C6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q54JH6-1", "protein_name": "DNA (cytosine-5)-methyltransferase", "gene_name": "dnmA", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEQLRVLEFYSGIGGMHYGLQESGVDFQVIQSFDINTNANLNYKYTFNEDSSQKSIESYSVEELEGFKANAWLMSPPCQPFTRLGLQKDDQDNRTNSFFHLLDVLTKIKDPPTYILIENVFGFAKKGSSNTRDHLLDTLIKMNYSFQEFHLSPQQFGLANQRLRYFCIAKRNGKLNFKKEQDKHNEKVDENKLNNNSNNNNEQNKYDNLKILDHIPGYDFHTTLEECDEISNYFDKDLTDDELYEKYKVPHNLLLSKGMLFDIKQKDSKTSNCVTKSYGKFIEGTGSIIQMDNNFKADINDNKSLIPLKLRYFSPKEITRLHGFPEEFKFSPKLTTIQCYRLIGNSLNVKIVSELLKVLVSPNEEEEQQEQQKEKEGKK", "length": 379 }, "evidence": [ { "id": "A0A9J7K7C6", "url": "https://omabrowser.org/oma/group/A0A9J7K7C6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q7YS61-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "TRDMT1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEPLRALELYSGIGGMHQALRESCIPAQVVAAVDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFNMILMSPPCQPFTRIGLQGDVTDPRTNSFLHILDILPRLQKLPKYILLENVKGFEMSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQPEPFPFQAPGQVLMEFPKTESEHPPKYAINAEKKTEEKKTGPKICFDSSTQCSGKEAILFKLETAGEIDRKHQQDSDLSVRMLKDFLEDDIDKHSFFLPPKSLLRYALLLDIVKPTSRRSMCFTKGYGRYIEGTGSVLQTTEDVQIENIYKSLTSLSQEEKIMRLSMLQLRFFTPKEIANLLGFPPEFGFPEMTTVKQRYRLLGNSLNVHVVAKLIKILCD", "length": 391 }, "evidence": [ { "id": "A0A9J7K7C6", "url": "https://omabrowser.org/oma/group/A0A9J7K7C6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9VKB3-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "Mt2", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MVFRVLELFSGIGGMHYAFNYAQLDGQIVAALDVNTVANAVYAHNYGSNLVKTRNIQSLSVKEVTKLQANMLLMSPPCQPHTRQGLQRDTEDKRSDALTHLCGLIPECQELEYILMENVKGFESSQARNQFIESLERSGFHWREFILTPTQFNVPNTRYRYYCIARKGADFPFAGGKIWEEMPGAIAQNQGLSQIAEIVEENVSPDFLVPDDVLTKRVLVMDIIHPAQSRSMCFTKGYTHYTEGTGSAYTPLSEDESHRIFELVKEIDTSNQDASKSEKILQQRLDLLHQVRLRYFTPREVARLMSFPENFEFPPETTNRQKYRLLGNSINVKVVGELIKLLTIK", "length": 345 }, "evidence": [ { "id": "A0A9J7K7C6", "url": "https://omabrowser.org/oma/group/A0A9J7K7C6/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "tRNA (cytidine-5-)-methyltransferase activity", "id": "GO:0016428", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016428", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K7C6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7C6" } ], "pmid": "" }, { "name": "RNA binding", "id": "GO:0003723", "url": 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035307715", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307715" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K3J0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3J0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Pcbp3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3J0", "locus": {} } ], "crossref": [ { "id": "cd22516", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22516", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd22519", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22519", "database": "CDD", 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}, { "id": "A0A9J7HCH2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCH2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCH2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCH2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCP6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCP6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCP6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCP6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J5M9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5M9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J5M9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5M9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J8K0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8K0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J8K0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8K0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K3J0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3J0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K3J0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3J0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KDN6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDN6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KDN6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDN6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KEN3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEN3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KEN3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEN3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KEN8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEN8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KEN8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEN8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3H8Y6", "url": "https://www.uniprot.org/uniprotkb/G3H8Y6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3H8Y6-1", "url": "https://www.uniprot.org/uniprotkb/G3H8Y6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGEGDAIWAPSILPHSTLSTLSHHPELHFGGKMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLELAEAEGNGPLTRKEDITVKTSSSPPEEQLGKGKRWISDPKCQSTVFQTCLRGTRCAPSRYTWVKSAKKSPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEVTGMGAL", "length": 439, "header": "tr|A0A9J7K3J0-1|A0A9J7K3J0_CRIGR Isoform 1 of Poly(RC)-binding protein 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Pcbp3 PE=4 SV=1 CANONICAL=A0A9J7K3J0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F3E4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3E4/entry", "sequence": { "sequence": "MGEGDAIWAPSILPHSTLSTLSHHPELHFGGKMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLEAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEVTGMGAL", "length": 346, "header": "tr|A0A9J7F3E4-1|A0A9J7K3J0_CRIGR Computationally mapped isoform of Poly(RC)-binding protein 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Pcbp3 PE=4 SV=1 CANONICAL=A0A9J7K3J0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F5S9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5S9/entry", "sequence": { "sequence": "MGEGDAIWAPSILPHSTLSTLSHHPELHFGGKMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEVTGMGAL", "length": 357, "header": "tr|A0A9J7F5S9-1|A0A9J7K3J0_CRIGR Computationally mapped isoform of Poly(RC)-binding protein 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Pcbp3 PE=4 SV=1 CANONICAL=A0A9J7K3J0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F6W2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6W2/entry", "sequence": { "sequence": "MGEGDAIWAPSILPHSTLSTLSHHPELHFGGKMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLEQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEVTGMGAL", "length": 332, "header": "tr|A0A9J7F6W2-1|A0A9J7K3J0_CRIGR Computationally mapped isoform of Poly(RC)-binding protein 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Pcbp3 PE=4 SV=1 CANONICAL=A0A9J7K3J0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F7L6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7L6/entry", "sequence": { "sequence": "MGEGDAIWAPSILPHSTLSTLSHHPELHFGGKMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEVTGMGAL", "length": 370, "header": "tr|A0A9J7F7L6-1|A0A9J7K3J0_CRIGR Computationally mapped isoform of Poly(RC)-binding protein 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Pcbp3 PE=4 SV=1 CANONICAL=A0A9J7K3J0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F8N5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8N5/entry", "sequence": { "sequence": "MGEGDAIWAPSILPHSTLSTLSHHPELHFGGKMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEVTGMGAL", "length": 356, "header": "tr|A0A9J7F8N5-1|A0A9J7K3J0_CRIGR Computationally mapped isoform of Poly(RC)-binding protein 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Pcbp3 PE=4 SV=1 CANONICAL=A0A9J7K3J0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H8R2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8R2/entry", "sequence": { "sequence": "MGEGDAIWAPSILPHSTLSTLSHHPELHFGGKMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLELAEAEGNGPLTRKEDITVKTSSSPPEEQLGKGKRWISDPKCQSTVFQTCLRGTRCAPSRYTWVKSAKKSPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDLTKLHQLAMQQTPFPPLGQTNPAFPGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEVTGMGAL", "length": 418, "header": "tr|A0A9J7H8R2-1|A0A9J7H8R2_CRIGR Computationally mapped isoform of Poly(RC)-binding protein 3 isoform X14 OS=Cricetulus griseus OX=10029 GN=Pcbp3 PE=4 SV=1 CANONICAL=A0A9J7K3J0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H9A4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9A4/entry", "sequence": { "sequence": "MGEGDAIWAPSILPHSTLSTLSHHPELHFGGKMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLELAEAEGNGPLTRKEDITVKTSSSPPEEQLGKGKRWISDPKCQSTVFQTCLRGTRCAPSRYTWVKSAKKSPPKGATIPYRPKPASTPVIFAGGQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEVTGMGAL", "length": 424, "header": "tr|A0A9J7H9A4-1|A0A9J7H9A4_CRIGR Computationally mapped isoform of Poly(RC)-binding protein 3 isoform X4 OS=Cricetulus griseus OX=10029 GN=Pcbp3 PE=4 SV=1 CANONICAL=A0A9J7K3J0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H9H0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9H0/entry", "sequence": { "sequence": "MGEGDAIWAPSILPHSTLSTLSHHPELHFGGKMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLELAEAEGNGPLTRKEDITVKTSSSPPEEQLGKGKRWISDPKCQSTVFQTCLRGTRCAPSRYTWVKSAKKSPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEVTGMGAL", "length": 419, "header": "tr|A0A9J7H9H0-1|A0A9J7H9H0_CRIGR Computationally mapped isoform of Poly(RC)-binding protein 3 isoform X13 OS=Cricetulus griseus OX=10029 GN=Pcbp3 PE=4 SV=1 CANONICAL=A0A9J7K3J0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HBV8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBV8/entry", "sequence": { "sequence": "MGEGDAIWAPSILPHSTLSTLSHHPELHFGGKMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDLTKLHQLAMQQTPFPPLGQTNPAFPGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEVTGMGAL", "length": 350, "header": "tr|A0A9J7HBV8-1|A0A9J7HBV8_CRIGR Computationally mapped isoform of Poly(RC)-binding protein 3 isoform X18 OS=Cricetulus griseus OX=10029 GN=Pcbp3 PE=4 SV=1 CANONICAL=A0A9J7K3J0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HCH2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCH2/entry", "sequence": { "sequence": "MESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLELAEAEGNGPLTRKEDITVKTSSSPPEEQLGKGKRWISDPKCQSTVFQTCLRGTRCAPSRYTWVKSAKKSPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEVTGMGAL", "length": 407, "header": "tr|A0A9J7HCH2-1|A0A9J7HCH2_CRIGR Computationally mapped isoform of Poly(RC)-binding protein 3 isoform X5 OS=Cricetulus griseus OX=10029 GN=Pcbp3 PE=4 SV=1 CANONICAL=A0A9J7K3J0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HCP6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCP6/entry", "sequence": { "sequence": "MGEGDAIWAPSILPHSTLSTLSHHPELHFGGKMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEVTGMGAL", "length": 351, "header": "tr|A0A9J7HCP6-1|A0A9J7HCP6_CRIGR Computationally mapped isoform of Poly(RC)-binding protein 3 isoform X17 OS=Cricetulus griseus OX=10029 GN=Pcbp3 PE=4 SV=1 CANONICAL=A0A9J7K3J0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J5M9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5M9/entry", "sequence": { "sequence": "MGEGDAIWAPSILPHSTLSTLSHHPELHFGGKMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLELAEAEGNGPLTRKEDITVKTSSSPPEEQLGKGKRWISDPKCQSTVFQTCLRGTRCAPSRYTWVKSAKKSPPKGATIPYRPKPASTPVIFAGGQQLTKLHQLAMQQTPFPPLGQTNPAFPGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEVTGMGAL", "length": 405, "header": "tr|A0A9J7J5M9-1|A0A9J7J5M9_CRIGR Computationally mapped isoform of Poly(RC)-binding protein 3 isoform X15 OS=Cricetulus griseus OX=10029 GN=Pcbp3 PE=4 SV=1 CANONICAL=A0A9J7K3J0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J8K0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8K0/entry", "sequence": { "sequence": "MGEGDAIWAPSILPHSTLSTLSHHPELHFGGKMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLEAYTIQGQYAIPHPDLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEVTGMGAL", "length": 345, "header": "tr|A0A9J7J8K0-1|A0A9J7J8K0_CRIGR Computationally mapped isoform of Poly(RC)-binding protein 3 isoform X11 OS=Cricetulus griseus OX=10029 GN=Pcbp3 PE=4 SV=1 CANONICAL=A0A9J7K3J0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K3J0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3J0/entry", "sequence": { "sequence": "MGEGDAIWAPSILPHSTLSTLSHHPELHFGGKMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLELAEAEGNGPLTRKEDITVKTSSSPPEEQLGKGKRWISDPKCQSTVFQTCLRGTRCAPSRYTWVKSAKKSPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEVTGMGAL", "length": 439, "header": "tr|A0A9J7K3J0-1|A0A9J7K3J0_CRIGR Isoform 1 of Poly(RC)-binding protein 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Pcbp3 PE=4 SV=1 CANONICAL=A0A9J7K3J0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KDN6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDN6/entry", "sequence": { "sequence": "MGEGDAIWAPSILPHSTLSTLSHHPELHFGGKMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLELAEAEGNGPLTRKEDITVKTSSSPPEEQLGKGKRWISDPKCQSTVFQTCLRGTRCAPSRYTWVKSAKKSPPKGATIPYRPKPASTPVIFAGGQQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEVTGMGAL", "length": 425, "header": "tr|A0A9J7KDN6-1|A0A9J7KDN6_CRIGR Computationally mapped isoform of Poly(RC)-binding protein 3 isoform X3 OS=Cricetulus griseus OX=10029 GN=Pcbp3 PE=4 SV=1 CANONICAL=A0A9J7K3J0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KEN3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEN3/entry", "sequence": { "sequence": "MGEGDAIWAPSILPHSTLSTLSHHPELHFGGKMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLELAEAEGNGPLTRKEDITVKTSSSPPEEQLGKGKRWISDPKCQSTVFQTCLRGTRCAPSRYTWVKSAKKSPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEVTGMGAL", "length": 438, "header": "tr|A0A9J7KEN3-1|A0A9J7KEN3_CRIGR Computationally mapped isoform of Poly(RC)-binding protein 3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Pcbp3 PE=4 SV=1 CANONICAL=A0A9J7K3J0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KEN8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEN8/entry", "sequence": { "sequence": "MGEGDAIWAPSILPHSTLSTLSHHPELHFGGKMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLELAEAEGNGPLTRKEDITVKTSSSPPEEQLGKGKRWISDPKCQSTVFQTCLRGTRCAPSRYTWVKSAKKSPPKGATIPYRPKPASTPVIFAGGQLTKLHQLAMQQTPFPPLGQTNPAFPGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEVTGMGAL", "length": 404, "header": "tr|A0A9J7KEN8-1|A0A9J7KEN8_CRIGR Computationally mapped isoform of Poly(RC)-binding protein 3 isoform X16 OS=Cricetulus griseus OX=10029 GN=Pcbp3 PE=4 SV=1 CANONICAL=A0A9J7K3J0-1" }, "locus": {} }, { "isoform_ac": "G3H8Y6-1", "url": "https://www.uniprot.org/uniprotkb/G3H8Y6/entry", "sequence": { "sequence": "MGEGDAIWAPSILPHSTLSTLSHHPELHFGGKMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEVTGMGAL", "length": 371, "header": "tr|G3H8Y6-1|A0A9J7K3J0_CRIGR Computationally mapped isoform of Poly(RC)-binding protein 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Pcbp3 PE=4 SV=1 CANONICAL=A0A9J7K3J0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H8Y6", "url": "https://www.uniprot.org/uniprotkb/G3H8Y6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H8Y6", "url": "https://www.uniprot.org/uniprotkb/G3H8Y6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100755366", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755366", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8M9Q4K7-1", "protein_name": "Poly(RC)-binding protein 3 isoform X1", "gene_name": "pcbp3", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEPSKVQSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDMLPNSTERAVTISGTPEAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFSGGQVRADPLAASAANLSLLLQHQPLPAYTIQGQYAIPHPDLYCPSNPQQLTKLHQLAMQQTPFTPLGQTTPAFPGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGSSERQITITGTPANISLAQYLINARFRDVAAMWNDPSSMTTS", "length": 358 }, "evidence": [ { "id": "A0A9J7K3J0", "url": "https://omabrowser.org/oma/group/A0A9J7K3J0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0ABK0LBV7-1", "protein_name": "Poly(rC) binding protein 3", "gene_name": "Pcbp3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGEGDAIWAPSILPHSTLSTLSHHPELHFGGKMESKVSEGGLNVTLTIRLLMHGKLVDRAQLHLWSPWSPGHPGIEELNSPTQTLLLDESFSSPMDSVLWLTQVPGSIPNTEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEVTGMGAL", "length": 427 }, "evidence": [ { "id": "A0A9J7K3J0", "url": "https://omabrowser.org/oma/group/A0A9J7K3J0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P38151-1", "protein_name": "PAB1-binding protein 2", "gene_name": "PBP2", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSTETTKPSITTTPTTVLVSPNTLKRKKGEDTSEEQLEAEIKRVALKDADSHSDNDHDSPDNVPSDVHLRMLCLVKHASLIVGHKGATISRIKSETSARINISNNIRGVPERIVYVRGTCDDVAKAYGMIVRALLEEHGNEDNGEDIEISINLLIPHHLMGCIIGKRGSRLREIEDLSAAKLFASPNQLLLSNDRILTINGVPDAIHIATFYISQTLLNFQMESPQKNVKRSIYYQPTQFNSVLIDHSQPNTIFHQRNHQYHPSDKLLSYKPNKNLPISSTLLSMATPQYTTASVANATAFQPNFVIPNVTVLDGPVISPAPGNHLLMNFVQQEIFIDEKFVGNVIGKDGKHINSVKESTGCSIIIQDPVEGSSERRLTIRGTFMASQAAIMLISNKIEIDRSNAERKRRSPL", "length": 413 }, "evidence": [ { "id": "A0A9J7K3J0", "url": "https://omabrowser.org/oma/group/A0A9J7K3J0/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P57721-1", "protein_name": "Poly(rC)-binding protein 3", "gene_name": "PCBP3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGEGDAFWAPSVLPHSTLSTLSHHPQPQFGRRMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEVTGMGTL", "length": 371 }, "evidence": [ { "id": "A0A9J7K3J0", "url": "https://omabrowser.org/oma/group/A0A9J7K3J0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P57722-1", "protein_name": "Poly(rC)-binding protein 3", "gene_name": "Pcbp3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGEGDAIWAPPILPHSTLGTLSHHPELHFGGKMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEVTGMGAL", "length": 371 }, "evidence": [ { "id": "A0A9J7K3J0", "url": "https://omabrowser.org/oma/group/A0A9J7K3J0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K3J0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3J0" } ], "pmid": "" }, { "name": "C-rich single-stranded DNA binding", "id": "GO:1990829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K3J0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3J0" } ], "pmid": "" }, { "name": "single-stranded DNA binding", "id": "GO:0003697", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003697", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K3J0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3J0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K3J0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3J0" } ], "pmid": "" }, { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K3J0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3J0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 172, "end_pos": 174, "annotation": "n_glycosylation_sequon" }, { "start_pos": 399, "end_pos": 401, "annotation": "n_glycosylation_sequon" }, { "start_pos": 417, "end_pos": 419, "annotation": "n_glycosylation_sequon" }, { "start_pos": 43, "end_pos": 45, "annotation": "n_glycosylation_sequon" }, { "start_pos": 80, "end_pos": 82, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7K3J0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3J0" }, { "id": "SM00322", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00322" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "K Homology", "eco_id": "ECO_0000259", "start_pos": 44, "end_pos": 112, "start_aa": "Val", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 172, "end_pos": 174 }, { "start_pos": 399, "end_pos": 401 }, { "start_pos": 417, "end_pos": 419 }, { "start_pos": 43, "end_pos": 45 }, { "start_pos": 80, "end_pos": 82 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": 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"table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JZZ4-1", "uniprot_ac": "A0A9J7JZZ4", "uniprot_id": "A0A9J7JZZ4_CRIGR", "mass": { "chemical_mass": 127487.0, "monoisotopic_mass": 127487.0 }, "refseq": { "ac": "XP_027284288", "name": "zinc finger protein 862 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027284288" }, "gene_names": [ { "name": "Znf862", "type": "recommended", "evidence": [ { "id": "A0A9J7JZZ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZZ4" } ] }, { "name": "Znf862", "type": "synonym", "evidence": [ { "id": "XP_027284288", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027284288" } ] } ], "protein_names": [ { "name": "Zinc finger protein 862 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7JZZ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZZ4/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 862 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027284288", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027284288" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048601.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027284288", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027284288" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JZZ4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZZ4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Znf862", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZZ4", "locus": {} } ], "crossref": [ { "id": "A0A9J7JZZ4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JZZ4", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100766003", "url": "https://www.ncbi.nlm.nih.gov/gene/100766003", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006580", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006580", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008389", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008389", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008906", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008906", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012337", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012337", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057456", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057456", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100766003", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766003", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DQACVGI", "url": "https://omabrowser.org/oma/group/DQACVGI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GEW2", "url": "https://www.orthodb.org/?gene=A0A9J7GEW2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GHE8", "url": "https://www.orthodb.org/?gene=A0A9J7GHE8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GK31", "url": "https://www.orthodb.org/?gene=A0A9J7GK31", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JZZ4", "url": "https://www.orthodb.org/?gene=A0A9J7JZZ4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3HB87", "url": "https://www.orthodb.org/?gene=G3HB87", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12263", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12263", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12263:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12263:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46880", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46880", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46880:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46880:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF05493", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05493", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF05699", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05699", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25431", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25431", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27073", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27073", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027284288", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027284288", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GEW2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEW2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GEW2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEW2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GHE8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHE8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GHE8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHE8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GK31", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GK31", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GK31-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GK31-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JZZ4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZZ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JZZ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZZ4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HB87", "url": "https://www.uniprot.org/uniprotkb/G3HB87", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HB87-1", "url": "https://www.uniprot.org/uniprotkb/G3HB87-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDAAESSPEGLFCFQQADSTSSLTAWRKSQAEFSLGVRTRTKSPSWLFCVPNSGPTAANPELFHEFGQGTEPWLGSIQGQQSLLNHHTGKTHLSYVEEINMQGFTREKGHYLPPQKKACLAHFSTENSTMEDRTGRNKNLPKPRSIQKSWFTQFPWLIMNKEQTALFCAVCQEYPSVRDRRSRLIEGYTGPFKMETLKYHAKSKAHIFCVNALAAKDPVWAAHLQGLRESSADILASPEHLFTVGYPTLYPPGPLGDFDGIAELLSSPRAELEDPPGNGAIPALYLDCMSDLRQKDIGSDILSPSDSNMCKDTIEFCSQEPPDNEQLKDSRVFGELPATFEDVAIYFTQEEWSLLDRQQKELYRDVMQMNYELLVSLEPPAAKPDLIIRLKQRAAPWIKDPNGLKSGKSRSLGKKKMAAVREANIQTQASATTESSLPASMETCASHCPPSVCEGEVKRTYRPRSIQRSWFGQFPWLVMDSKETKLFCSVCRERPTLHDKSSRLVQGYTGPFKVETLKYHEVSKAHKLCVNIVEIRDDSPQPTLTPEISSDLMANMEHFFSAAYFIAYHSRPLNDFEKVLQLLQNTGTTLLGKYRNRTACTQFIKYISETLKKEILRDIRNSPCASLLLDSCTDFSNQACVGIYMRYLKQMEVKESYVTLAPLSSETVDGYFETIIAALDELDIPFRKPGWVVGLGTDGSAMLSRKGGLVEKFQEVMPQLLPMHSVAHRLHVAVVDACGSIDLVRKCDRHIRTVFKFYQSSNKRLRELQGVAAPLGQEIIRLKDLNAVRWVASKRRTLDTLTVSWPALARHLQGVVEAGGQTGQRAKGMLKLVKSFHLVKFCHFLLDFLSIFRPLSEVCQKELVPVTEVNSSLGHAYVALESLRQQAGPKEEEFNASLQDGQLHGISLERVEMAEQWFQADRERTILTGAEYLQQRFDADRPAQLKNMEVLDTMAWPSGIELSCFGNNDILSLARYFELSLPVGYSEEMLLEEWLSLKAATQNLPFSGLCKNTLTQHCRFPLLSKLMTVVVSVPISTSCCERGFKAMNRIRTGERTKLSNEVLNTLMMAAVNGVAVTEYDPQPAIQHWYMTSSGRRFSLPTPVPIQSSGRRGMAALHKEEPMVRKTSVTPSGEP", "length": 1134, "header": "tr|A0A9J7JZZ4-1|A0A9J7JZZ4_CRIGR Isoform 1 of Zinc finger protein 862 isoform X1 OS=Cricetulus griseus OX=10029 GN=Znf862 PE=4 SV=1 CANONICAL=A0A9J7JZZ4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GEW2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEW2/entry", "sequence": { "sequence": "MAAVREANIQTQASATTESSLPASMETCASHCPPSVCEGEVKRTYRPRSIQRSWFGQFPWLVMDSKETKLFCSVCRERPTLHDKSSRLVQGYTGPFKVETLKYHEVSKAHKLCVNIVEIRDDSPQPTLTPEISSDLMANMEHFFSAAYFIAYHSRPLNDFEKVLQLLQNTGTTLLGKYRNRTACTQFIKYISETLKKEILRDIRNSPCASLLLDSCTDFSNQACVGIYMRYLKQMEVKESYVTLAPLSSETVDGYFETIIAALDELDIPFRKPGWVVGLGTDGSAMLSRKGGLVEKFQEVMPQLLPMHSVAHRLHVAVVDACGSIDLVRKCDRHIRTVFKFYQSSNKRLRELQGVAAPLGQEIIRLKDLNAVRWVASKRRTLDTLTVSWPALARHLQGVVEAGGQTGQRAKGMLKLVKSFHLVKFCHFLLDFLSIFRPLSEVCQKELVPVTEVNSSLGHAYVALESLRQQAGPKEEEFNASLQDGQLHGISLERVEMAEQWFQADRERTILTGAEYLQQRFDADRPAQLKNMEVLDTMAWPSGIELSCFGNNDILSLARYFELSLPVGYSEEMLLEEWLSLKAATQNLPFSGLCKNTLTQHCRFPLLSKLMTVVVSVPISTSCCERGFKAMNRIRTGERTKLSNEVLNTLMMAAVNGVAVTEYDPQPAIQHWYMTSSGRRFSLPTPVPIQSSGRRGMAALHKEEPMVRKTSVTPSGEP", "length": 718, "header": "tr|A0A9J7GEW2-1|A0A9J7JZZ4_CRIGR Computationally mapped isoform of Zinc finger protein 862 isoform X1 OS=Cricetulus griseus OX=10029 GN=Znf862 PE=4 SV=1 CANONICAL=A0A9J7JZZ4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GHE8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHE8/entry", "sequence": { "sequence": "MEPGETGKVPVTFDDITLYLLQEEWMQLNHPQKDFSASNKPTAPLGKTHLSYVEEINMQGFTREKGHYLPPQKKACLAHFSTENSTMEDRTGRNKNLPKPRSIQKSWFTQFPWLIMNKEQTALFCAVCQEYPSVRDRRSRLIEGYTGPFKMETLKYHAKSKAHIFCVNALAAKDPVWAAHLQGLRESSADILASPEHLFTVGYPTLYPPGPLGDFDGIAELLSSPRAELEDPPGNGAIPALYLDCMSDLRQKDIGSDILSPSDSNMCKDTIEFCSQEPPDNEQLKDSRVFGELPATFEDVAIYFTQEEWSLLDRQQKELYRDVMQMNYELLVSLEPPAAKPDLIIRLKQRAAPWIKDPNGLKSGKSRSLGKKKMAAVREANIQTQASATTESSLPASMETCASHCPPSVCEGEVKRTYRPRSIQRSWFGQFPWLVMDSKETKLFCSVCRERPTLHDKSSRLVQGYTGPFKVETLKYHEVSKAHKLCVNIVEIRDDSPQPTLTPEISSDLMANMEHFFSAAYFIAYHSRPLNDFEKVLQLLQNTGTTLLGKYRNRTACTQFIKYISETLKKEILRDIRNSPCASLLLDSCTDFSNQACVGIYMRYLKQMEVKESYVTLAPLSSETVDGYFETIIAALDELDIPFRKPGWVVGLGTDGSAMLSRKGGLVEKFQEVMPQLLPMHSVAHRLHVAVVDACGSIDLVRKCDRHIRTVFKFYQSSNKRLRELQGVAAPLGQEIIRLKDLNAVRWVASKRRTLDTLTVSWPALARHLQGVVEAGGQTGQRAKGMLKLVKSFHLVKFCHFLLDFLSIFRPLSEVCQKELVPVTEVNSSLGHAYVALESLRQQAGPKEEEFNASLQDGQLHGISLERVEMAEQWFQADRERTILTGAEYLQQRFDADRPAQLKNMEVLDTMAWPSGIELSCFGNNDILSLARYFELSLPVGYSEEMLLEEWLSLKAATQNLPFSGLCKNTLTQHCRFPLLSKLMTVVVSVPISTSCCERGFKAMNRIRTGERTKLSNEVLNTLMMAAVNGVAVTEYDPQPAIQHWYMTSSGRRFSLPTPVPIQSSGRRGMAALHKEEPMVRKTSVTPSGEP", "length": 1091, "header": "tr|A0A9J7GHE8-1|A0A9J7JZZ4_CRIGR Computationally mapped isoform of Zinc finger protein 862 isoform X1 OS=Cricetulus griseus OX=10029 GN=Znf862 PE=4 SV=1 CANONICAL=A0A9J7JZZ4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GK31-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GK31/entry", "sequence": { "sequence": "MNQRRFAWSRACATGITLRMLTALLQDVHLLGESAVRPSNPPEQSIAHPVMTAHSFALPVIIFTTFWGLIGIAGPWFVPKGPNRGVIITMLVATAVCCYLFWLIAILAQLNPLFGPQLKNETIWYVRFLWE", "length": 131, "header": "tr|A0A9J7GK31-1|A0A9J7JZZ4_CRIGR Computationally mapped isoform of Zinc finger protein 862 isoform X1 OS=Cricetulus griseus OX=10029 GN=Znf862 PE=4 SV=1 CANONICAL=A0A9J7JZZ4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JZZ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZZ4/entry", "sequence": { "sequence": "MDAAESSPEGLFCFQQADSTSSLTAWRKSQAEFSLGVRTRTKSPSWLFCVPNSGPTAANPELFHEFGQGTEPWLGSIQGQQSLLNHHTGKTHLSYVEEINMQGFTREKGHYLPPQKKACLAHFSTENSTMEDRTGRNKNLPKPRSIQKSWFTQFPWLIMNKEQTALFCAVCQEYPSVRDRRSRLIEGYTGPFKMETLKYHAKSKAHIFCVNALAAKDPVWAAHLQGLRESSADILASPEHLFTVGYPTLYPPGPLGDFDGIAELLSSPRAELEDPPGNGAIPALYLDCMSDLRQKDIGSDILSPSDSNMCKDTIEFCSQEPPDNEQLKDSRVFGELPATFEDVAIYFTQEEWSLLDRQQKELYRDVMQMNYELLVSLEPPAAKPDLIIRLKQRAAPWIKDPNGLKSGKSRSLGKKKMAAVREANIQTQASATTESSLPASMETCASHCPPSVCEGEVKRTYRPRSIQRSWFGQFPWLVMDSKETKLFCSVCRERPTLHDKSSRLVQGYTGPFKVETLKYHEVSKAHKLCVNIVEIRDDSPQPTLTPEISSDLMANMEHFFSAAYFIAYHSRPLNDFEKVLQLLQNTGTTLLGKYRNRTACTQFIKYISETLKKEILRDIRNSPCASLLLDSCTDFSNQACVGIYMRYLKQMEVKESYVTLAPLSSETVDGYFETIIAALDELDIPFRKPGWVVGLGTDGSAMLSRKGGLVEKFQEVMPQLLPMHSVAHRLHVAVVDACGSIDLVRKCDRHIRTVFKFYQSSNKRLRELQGVAAPLGQEIIRLKDLNAVRWVASKRRTLDTLTVSWPALARHLQGVVEAGGQTGQRAKGMLKLVKSFHLVKFCHFLLDFLSIFRPLSEVCQKELVPVTEVNSSLGHAYVALESLRQQAGPKEEEFNASLQDGQLHGISLERVEMAEQWFQADRERTILTGAEYLQQRFDADRPAQLKNMEVLDTMAWPSGIELSCFGNNDILSLARYFELSLPVGYSEEMLLEEWLSLKAATQNLPFSGLCKNTLTQHCRFPLLSKLMTVVVSVPISTSCCERGFKAMNRIRTGERTKLSNEVLNTLMMAAVNGVAVTEYDPQPAIQHWYMTSSGRRFSLPTPVPIQSSGRRGMAALHKEEPMVRKTSVTPSGEP", "length": 1134, "header": "tr|A0A9J7JZZ4-1|A0A9J7JZZ4_CRIGR Isoform 1 of Zinc finger protein 862 isoform X1 OS=Cricetulus griseus OX=10029 GN=Znf862 PE=4 SV=1 CANONICAL=A0A9J7JZZ4-1" }, "locus": {} }, { "isoform_ac": "G3HB87-1", "url": "https://www.uniprot.org/uniprotkb/G3HB87/entry", "sequence": { "sequence": "MEPGETGKVPVTFDDITLYLLQEEWMQLNHPQKDFSASNKPTAPLGPTAANPELFHEFGQGTEPWLGSIQGQQSLLNHHTGKTHLSYVEEINMQGFTREKGHYLPPQKKACLAHFSTENSTMEDRTGRNKNLPKPRSIQKSWFTQFPWLIMNKEQTALFCAVCQEYPSVRDRRSRLIEGYTGPFKMETLKYHAKSKAHIFCVNALAAKDPVWAAHLQGLRESSADILASPEHLFTVGYPTLYPPGPLGDFDGIAELLSSPRAELEDPPGNGAIPALYLDCMSDLRQKDIGSDILSPSDSNMCKDTIEFCSQEPPDNEQLKDSRVFGELPATFEDVAIYFTQEEWSLLDRQQKELYRDVMQMNYELLVSLEPPAAKPDLIIRLKQRAAPWIKDPNGLKSGKSRSLGKKKMAAVREANIQTQASATTESSLPASMETCASHCPPSVCEGEVKRTYRPRSIQRSWFGQFPWLVMDSKETKLFCSVCRERPTLHDKSSRLVQGYTGPFKVETLKYHEVSKAHKLCVNIVEIRDDSPQPTLTPEISSDLMANMEHFFSAAYFIAYHSRPLNDFEKVLQLLQNTGTTLLGKYRNRTACTQFIKYISETLKKEILRDIRNSPCASLLLDSCTDFSNQACVGIYMRYLKQMEVKESYVTLAPLSSETVDGYFETIIAALDELDIPFRKPGWVVGLGTDGSAMLSRKGGLVEKFQEVMPQLLPMHSVAHRLHVAVVDACGSIDLVRKCDRHIRTVFKFYQSSNKRLRELQGVAAPLGQEIIRLKDLNAVRWVASKRRTLDTLTVSWPALARHLQGVVEAGGQTGQRAKGMLKLVKSFHLVKFCHFLLDFLSIFRPLSEVCQKELVPVTEVNSSLGHAYVALESLRQQAGPKEEEFNASLQDGQLHGISLERVEMAEQWFQADRERTILTGAEYLQQRFDADRPAQLKNMEVLDTMAWPSGIELSCFGNNDILSLARYFELSLPVGYSEEMLLEEWLSLKAATQNLPFSGLCKNTLTQHCRFPLLSKLMTVVVSVPISTSCCERGFKAMNRIRTGERTKLSNEVLNTLMMAAVNGVAVTEYDPQPAIQHWYMTSSGRRFSLPTPVPIQSSGRRGMAALHKEEPMVRKTSVTPSGEP", "length": 1126, "header": "tr|G3HB87-1|A0A9J7JZZ4_CRIGR Computationally mapped isoform of Zinc finger protein 862 isoform X1 OS=Cricetulus griseus OX=10029 GN=Znf862 PE=4 SV=1 CANONICAL=A0A9J7JZZ4-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 56, "start_aa": "Thr", "end_pos": 56, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr56", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HB87", "url": "https://www.uniprot.org/uniprotkb/G3HB87" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HB87", "url": "https://www.uniprot.org/uniprotkb/G3HB87" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100766003", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766003", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1MFU7-1", "protein_name": "Zinc finger protein 862", "gene_name": "ZNF862", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEPRESGKAPVTFDDITVYLLQEEWVLLSQQQKDICGSDKLVAPLGSTIASPELFYKFEQGPEPWLASVQGQRSHLSPNPGKTKMGFVEEMDMQSSSREAGLYLPPQKEACLSHFSSERGSLQGDCAGRSSKPSKPRSIQKSWFAQFPWLVMNEEQTALFCCACREYPSVRDKRSRLIEGYTGPFKVETLKYHAKSKAHVFCVKALAARDPLWAARFQSTQEVSGDVLASQGPFFPADYPIFYPPGPLGACDNVAQLLPSSRAALGDPGGNGAIPALYLDRIPDFRQTEIVDDIRSSSDDNILCNDSAEPCGQDPSEEGLLEELPVVFEDVAVYFTREEWGALDKWQKELYRDVMQMNYELLASLGPAAAKPDLISKLERRAAPWIRDPHGPKLGKGRPPPGKKKTVAVREAHIQASAVESSWLPVPSVETCTSYCRPRLCELEADGQAKIKRTYRPRSIQRSWFGQFPWLVMDPKETKLFCSACKERPSLHDRSSRLVRGYTGPFKVETLKYHEVSKAHKLCVNTVEVREDTPQAAAVPEISSDLMANMEHFFHAAYSIAYHSRPLNDFEKILQLLQSTGTMILGKYRNRTACTQFIKHISETLKKEILEDVRNSPCLSVLLDGATDASDQSCVGIYLRYLKGTEMKESYLTLAPLHSETADGYFETIISALDELDIPFRKPGWVVGLGTDGSAPLRCGGGLVEKLQEILPQLLPVHCVAHRLPLAVVDACGGIGLVKKCDRHIRTVFKFYQSSNKRLNELQEGAAPLEQEMVRLKDLNAVRWVASERRTLNALTLSWPALARHLQSVADAGGQVGHRAQGMLKLMKGFHFLKFCHFLLDFLSLYRPLSEVCQKEIVLITEVNATLGRAYVALETLRHRAGPKEEEFNAGFRDGRLHGIVLERTETSEQWFQADRERVVLTGIEYLQRRFDADRPPQLRNMEVFDTKAWPSGMALASFGNDDILTLARYFELSLPPGYSEEALLEEWLGLKAMAQNLPFSMLCKHALAQHRRFPLLSRLLALVVCVPVSTSCCERGFSAMNRIRTDERTKLSNEVINMLMMTAVNGVAVTEYDPQPAIQHWYLTSSGRRFSHVYTCAPVPSRSHARAGLRKKTGALCREEPTAWKPPGPSCREPVEVLTACVLEPPERLPCPLLGQEAPGCPAKALL", "length": 1168 }, "evidence": [ { "id": "A0A9J7JZZ4", "url": "https://omabrowser.org/oma/group/A0A9J7JZZ4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "O60290-1", "protein_name": "Zinc finger protein 862", "gene_name": "ZNF862", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEPRESGKAPVTFDDITVYLLQEEWVLLSQQQKELCGSNKLVAPLGPTVANPELFRKFGRGPEPWLGSVQGQRSLLEHHPGKKQMGYMGEMEVQGPTRESGQSLPPQKKAYLSHLSTGSGHIEGDWAGRNRKLLKPRSIQKSWFVQFPWLIMNEEQTALFCSACREYPSIRDKRSRLIEGYTGPFKVETLKYHAKSKAHMFCVNALAARDPIWAARFRSIRDPPGDVLASPEPLFTADCPIFYPPGPLGGFDSMAELLPSSRAELEDPGGDGAIPAMYLDCISDLRQKEITDGIHSSSDINILYNDAVESCIQDPSAEGLSEEVPVVFEELPVVFEDVAVYFTREEWGMLDKRQKELYRDVMRMNYELLASLGPAAAKPDLISKLERRAAPWIKDPNGPKWGKGRPPGNKKMVAVREADTQASAADSALLPGSPVEARASCCSSSICEEGDGPRRIKRTYRPRSIQRSWFGQFPWLVIDPKETKLFCSACIERPNLHDKSSRLVRGYTGPFKVETLKYHEVSKAHRLCVNTVEIKEDTPHTALVPEISSDLMANMEHFFNAAYSIAYHSRPLNDFEKILQLLQSTGTVILGKYRNRTACTQFIKYISETLKREILEDVRNSPCVSVLLDSSTDASEQACVGIYIRYFKQMEVKESYITLAPLYSETADGYFETIVSALDELDIPFRKPGWVVGLGTDGSAMLSCRGGLVEKFQEVIPQLLPVHCVAHRLHLAVVDACGSIDLVKKCDRHIRTVFKFYQSSNKRLNELQEGAAPLEQEIIRLKDLNAVRWVASRRRTLHALLVSWPALARHLQRVAEAGGQIGHRAKGMLKLMRGFHFVKFCHFLLDFLSIYRPLSEVCQKEIVLITEVNATLGRAYVALESLRHQAGPKEEEFNASFKDGRLHGICLDKLEVAEQRFQADRERTVLTGIEYLQQRFDADRPPQLKNMEVFDTMAWPSGIELASFGNDDILNLARYFECSLPTGYSEEALLEEWLGLKTIAQHLPFSMLCKNALAQHCRFPLLSKLMAVVVCVPISTSCCERGFKAMNRIRTDERTKLSNEVLNMLMMTAVNGVAVTEYDPQPAIQHWYLTSSGRRFSHVYTCAQVPARSPASARLRKEEMGALYVEEPRTQKPPILPSREAAEVLKDCIMEPPERLLYPHTSQEAPGMS", 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897 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"gene_names": [ { "name": "Bsnd", "type": "recommended", "evidence": [ { "id": "A0A9J7K0W4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0W4" } ] }, { "name": "Bsnd", "type": "synonym", "evidence": [ { "id": "XP_035295108", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295108" } ] } ], "protein_names": [ { "name": "Barttin isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7K0W4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0W4/entry#names_and_taxonomy" } ] }, { "name": "barttin isoform X1", "type": "synonym", "evidence": [ { "id": "XP_035295108", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295108" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035295108", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295108" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K0W4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0W4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Bsnd", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0W4", "locus": {} } ], "crossref": [ { "id": "A0A9J7K0W4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K0W4", "database": "AlphaFoldDB", "categories": [] }, { "id": "100750920", "url": "https://www.ncbi.nlm.nih.gov/gene/100750920", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029181", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029181", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100750920", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750920", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FYAMGSV", "url": "https://omabrowser.org/oma/group/FYAMGSV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7K0W4", "url": "https://www.orthodb.org/?gene=A0A9J7K0W4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3GTK6", "url": "https://www.orthodb.org/?gene=G3GTK6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR28399", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28399", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28399:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28399:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15462", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15462", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035295108", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295108", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K0W4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0W4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K0W4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0W4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3GTK6", "url": "https://www.uniprot.org/uniprotkb/G3GTK6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3GTK6-1", "url": "https://www.uniprot.org/uniprotkb/G3GTK6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADEKTFRIGFIVLGLFLLSLGTFLMSHDQPQVYGTFYAMGSIMVIGGVIWSMCQCYPKITFVPADTDFQGILSPKALSLLESSLSEVKGPSPQPPYVRLWEEAAYDQSLPDFTHIQMKVLGYSEDPRPLLAPEPKTGVSSGGEGEPHTAQAWMEAAVVVHRGLDEKEGERPGTQSSPPACSQGSAPLASFQDDLDMGSSEGSSPHPSPPNREEPHPQVPWASMGPLDRFSDFALIDDTPTSEDMVLEGQVQKAALPSKQQWSLRMKEKETTQASAEEPEQEEEDLYYGLPDSPGDPLPDKELGFEPDVQG", "length": 311, "header": "tr|A0A9J7K0W4-1|A0A9J7K0W4_CRIGR Isoform 1 of Barttin isoform X1 OS=Cricetulus griseus OX=10029 GN=Bsnd PE=4 SV=1 CANONICAL=A0A9J7K0W4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K0W4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0W4/entry", "sequence": { "sequence": "MADEKTFRIGFIVLGLFLLSLGTFLMSHDQPQVYGTFYAMGSIMVIGGVIWSMCQCYPKITFVPADTDFQGILSPKALSLLESSLSEVKGPSPQPPYVRLWEEAAYDQSLPDFTHIQMKVLGYSEDPRPLLAPEPKTGVSSGGEGEPHTAQAWMEAAVVVHRGLDEKEGERPGTQSSPPACSQGSAPLASFQDDLDMGSSEGSSPHPSPPNREEPHPQVPWASMGPLDRFSDFALIDDTPTSEDMVLEGQVQKAALPSKQQWSLRMKEKETTQASAEEPEQEEEDLYYGLPDSPGDPLPDKELGFEPDVQG", "length": 311, "header": "tr|A0A9J7K0W4-1|A0A9J7K0W4_CRIGR Isoform 1 of Barttin isoform X1 OS=Cricetulus griseus OX=10029 GN=Bsnd PE=4 SV=1 CANONICAL=A0A9J7K0W4-1" }, "locus": {} }, { "isoform_ac": "G3GTK6-1", "url": "https://www.uniprot.org/uniprotkb/G3GTK6/entry", "sequence": { "sequence": "MADEKTFRIGFIVLGLFLLSLGTFLMSHDQPQVYGTFYAMGSIMVIGGVIWSMCQCYPKITFVPADTDFQGILSPKALSLLESSLSEVKSPQPPYVRLWEEAAYDQSLPDFTHIQMKVLGYSEDPRPLLAPEPKTGVSSGGEGEPHTAQAWMEAAVVVHRGLDEKEGERPGTQSSPPACSQGSAPLASFQDDLDMGSSEGSSPHPSPPNREEPHPQVPWASMGPLDRFSDFALIDDTPTSEDMVLEGQVQKAALPSKQQWSLRMKEKETTQASAEEPEQEEEDLYYGLPDSPGDPLPDKELGFEPDVQG", "length": 309, "header": "tr|G3GTK6-1|A0A9J7K0W4_CRIGR Computationally mapped isoform of Barttin isoform X1 OS=Cricetulus griseus OX=10029 GN=Bsnd PE=4 SV=1 CANONICAL=A0A9J7K0W4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3GTK6", "url": "https://www.uniprot.org/uniprotkb/G3GTK6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3GTK6", "url": "https://www.uniprot.org/uniprotkb/G3GTK6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100750920", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750920", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZXD0-1", "protein_name": "Barttin CLCNK type accessory subunit beta", "gene_name": "BSND", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAEEKTFRYGFIMLGFFLVMTGMFIMSVEKPQIYATFCAGGILLIAVGVTWSMCQCYPRVTFVPVQPEAEKFPDHKATLLLKKGSPGTLSLQDPYSSDYEKSLPSYEQIQASAQPRPHSCSQALLKAKAEVHQESGGPQEPPREAAPHLEPGSCPSQPPPGPAPLVSLLEDMDTASLESSVPGSPSSSQSCSGRGEHAGSPRKASRKVNDLYYGLGEGSDALLEDSDHLFEPEK", "length": 234 }, "evidence": [ { "id": "A0A9J7K0W4", "url": "https://omabrowser.org/oma/group/A0A9J7K0W4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q8R2H3-1", "protein_name": "Barttin", "gene_name": "Bsnd", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADEKTFRIGFIVLGLFLLSLGTFLMSHDRPQVYGTFYAMGSIMVIGGVLWSMCQCYPKITFVPADSDFQGMLSPKALSLLETGLSEVKSPQPPYVRLWEEAAYDQSLPDFTHIQMKVMGYSEDPRPLLAPELKTGTSSAKEGEPHSAQTWMEAAVVVHRELDEKEGEKSRSQSSPPACSQGSAPLASFHDDLDVGSSEGRSPQPSPPDRDEAHLQVPWASRGPLDRFGDFALIDDTPISEDMGLEGQAQEEALPSKQPWSLRMKEETVQAGAEEPEQEEEDLYYGLPDSPGDPLPDKELGFEPDVQG", "length": 308 }, "evidence": [ { "id": "A0A9J7K0W4", "url": "https://omabrowser.org/oma/group/A0A9J7K0W4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8VIM4-1", "protein_name": "Barttin", "gene_name": "Bsnd", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": 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"https://www.ncbi.nlm.nih.gov/protein/XP_035298584" }, "gene_names": [ { "name": "Gabarapl2", "type": "recommended", "evidence": [ { "id": "A0A9J7K788", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K788" } ] }, { "name": "Gabarapl2", "type": "synonym", "evidence": [ { "id": "XP_035298584", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035298584" } ] } ], "protein_names": [ { "name": "Gamma-aminobutyric acid receptor-associated protein-like 2 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7K788", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K788/entry#names_and_taxonomy" } ] }, { "name": "gamma-aminobutyric acid receptor-associated protein-like 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_035298584", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035298584" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035298584", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035298584" } ] }, { "annotation": "Ubiquitin-like modifier involved in intra-Golgi traffic. Modulates intra-Golgi transport through coupling between NSF activity and SNAREs activation. It first stimulates the ATPase activity of NSF which in turn stimulates the association with GOSR1. Involved in autophagy. Plays a role in mitophagy which contributes to regulate mitochondrial quantity and quality by eliminating the mitochondria to a basal level to fulfill cellular energy requirements and preventing excess ROS production. Whereas LC3s are involved in elongation of the phagophore membrane, the GABARAP/GATE-16 subfamily is essential for a later stage in autophagosome maturation.", "evidence": [ { "database": "UniProtKB", "id": "G3I4N5", "url": "https://www.uniprot.org/uniprotkb/G3I4N5#function" }, { "database": "UniProtKB", "id": "ARBA00056137", "url": "https://www.uniprot.org/uniprotkb/ARBA00056137#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K788", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K788" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Gabarapl2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K788", "locus": {} } ], "crossref": [ { "id": "cd17163", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17163", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100767407", "url": "https://www.ncbi.nlm.nih.gov/gene/100767407", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004241", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004241", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100767407", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767407", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AKMKWMF", "url": "https://omabrowser.org/oma/group/AKMKWMF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7K788", "url": "https://www.orthodb.org/?gene=A0A9J7K788", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3I4N5", "url": "https://www.orthodb.org/?gene=G3I4N5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10969", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10969", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02991", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02991", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035298584", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035298584", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GWZ6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GWZ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GWZ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GWZ6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K788", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K788", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K788-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K788-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3I4N5", "url": "https://www.uniprot.org/uniprotkb/G3I4N5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3I4N5-1", "url": "https://www.uniprot.org/uniprotkb/G3I4N5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSRSWRKQMWAKQYSQHVCRCLHNHIPPVGFHWSKGLTTELPEASPMLSLRVKLISTLSDSQGLGNGSSQRQAGHIKYMFTTPGATKYPDTLNTISAQYILAKSM", "length": 190, "header": "tr|A0A9J7K788-1|A0A9J7K788_CRIGR Isoform 1 of Gamma-aminobutyric acid receptor-associated protein-like 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Gabarapl2 PE=3 SV=1 CANONICAL=A0A9J7K788-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GWZ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GWZ6/entry", "sequence": { "sequence": "MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSRSWRKQMWAKQYSQHVCRCLHNHIPPVGFHWSKVLDAM", "length": 125, "header": "tr|A0A9J7GWZ6-1|A0A9J7GWZ6_CRIGR Computationally mapped isoform of Gamma-aminobutyric acid receptor-associated protein-like 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Gabarapl2 PE=3 SV=1 CANONICAL=A0A9J7K788-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K788-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K788/entry", "sequence": { "sequence": "MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSRSWRKQMWAKQYSQHVCRCLHNHIPPVGFHWSKGLTTELPEASPMLSLRVKLISTLSDSQGLGNGSSQRQAGHIKYMFTTPGATKYPDTLNTISAQYILAKSM", "length": 190, "header": "tr|A0A9J7K788-1|A0A9J7K788_CRIGR Isoform 1 of Gamma-aminobutyric acid receptor-associated protein-like 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Gabarapl2 PE=3 SV=1 CANONICAL=A0A9J7K788-1" }, "locus": {} }, { "isoform_ac": "G3I4N5-1", "url": "https://www.uniprot.org/uniprotkb/G3I4N5/entry", "sequence": { "sequence": "MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF", "length": 117, "header": "tr|G3I4N5-1|A0A9J7K788_CRIGR Computationally mapped isoform of Gamma-aminobutyric acid receptor-associated protein-like 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Gabarapl2 PE=3 SV=1 CANONICAL=A0A9J7K788-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 167, "start_aa": "Thr", "end_pos": 167, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr167", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3I4N5", "url": "https://www.uniprot.org/uniprotkb/G3I4N5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3I4N5", "url": "https://www.uniprot.org/uniprotkb/G3I4N5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100767407", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767407", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8W4FN23-1", "protein_name": "Gamma-aminobutyric acid receptor-associated protein-like 2", "gene_name": "GABARAPL2", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF", "length": 117 }, "evidence": [ { "id": "A0A9J7K788", "url": "https://omabrowser.org/oma/group/A0A9J7K788/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "P60519-1", "protein_name": "Gamma-aminobutyric acid receptor-associated protein-like 2", "gene_name": "GABARAPL2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF", "length": 117 }, "evidence": [ { "id": "A0A9J7K788", "url": "https://omabrowser.org/oma/group/A0A9J7K788/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P60520-1", "protein_name": "Gamma-aminobutyric acid receptor-associated protein-like 2", "gene_name": "GABARAPL2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF", "length": 117 }, "evidence": [ { "id": "A0A9J7K788", "url": "https://omabrowser.org/oma/group/A0A9J7K788/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P60521-1", "protein_name": "Gamma-aminobutyric acid receptor-associated protein-like 2", "gene_name": "Gabarapl2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF", "length": 117 }, "evidence": [ { "id": "A0A9J7K788", "url": "https://omabrowser.org/oma/group/A0A9J7K788/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P60522-1", "protein_name": "Gamma-aminobutyric acid receptor-associated protein-like 2", "gene_name": "Gabarapl2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF", "length": 117 }, "evidence": [ { "id": "A0A9J7K788", "url": "https://omabrowser.org/oma/group/A0A9J7K788/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q86CR8-1", "protein_name": "Autophagy-related protein 8", "gene_name": "atg8", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MVHVSSFKNDHPLDKRREVAERIRSKYLDRIPVIVEKAPRSDAPDIDKKKYLVPADITVGKFVYEIRKHMTKVSAEKAIYLFVNNTIPPTAALISQIYERYKDEDGFLYITYSGENTFGSDL", "length": 122 }, "evidence": [ { "id": "A0A9J7K788", "url": "https://omabrowser.org/oma/group/A0A9J7K788/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8S927-1", "protein_name": "Autophagy-related protein 8c", "gene_name": "ATG8C", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MANSSFKLEHPLERRQIESSRIREKYPDRIPVIVERAERSDVPNIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTAAMMSAIYDENKDEDGFLYMTYSGENTFGLV", "length": 119 }, "evidence": [ { "id": "A0A9J7K788", "url": "https://omabrowser.org/oma/group/A0A9J7K788/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "autophagosome assembly", "id": "GO:0000045", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000045", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K788", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K788" } ], "pmid": "" }, { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K788", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K788" } ], "pmid": "" }, { "name": "protein localization to endoplasmic reticulum", "id": "GO:0070972", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070972", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K788", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K788" } ], "pmid": "" }, { "name": "negative regulation of proteasomal protein catabolic process", "id": "GO:1901799", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1901799", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K788", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K788" } ], "pmid": "" }, { "name": "autophagy", "id": "GO:0006914", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006914", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K788", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K788" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K788", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K788" } ], "pmid": "" }, { "name": "autophagosome membrane", "id": "GO:0000421", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000421", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K788", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K788" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K788", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K788" } ], "pmid": "" }, { "name": "cytoplasmic vesicle", "id": "GO:0031410", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031410", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K788", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K788" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K788", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K788" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "ubiquitin protein ligase binding", "id": "GO:0031625", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031625", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K788", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K788" } ], "pmid": "" }, { "name": "phosphatidylethanolamine binding", "id": "GO:0008429", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008429", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K788", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K788" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 151, "end_pos": 153, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 167 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 151, "end_pos": 153 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7K0D7-1", "uniprot_ac": "A0A9J7K0D7", "uniprot_id": "A0A9J7K0D7_CRIGR", "mass": { "chemical_mass": 86311.0, "monoisotopic_mass": 86311.0 }, "refseq": { "ac": "XP_007652346", "name": "ribosomal biogenesis protein LAS1L isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652346" }, "gene_names": [ { "name": "Las1l", "type": "recommended", "evidence": [ { "id": "A0A9J7K0D7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0D7" } ] }, { "name": "Las1l", "type": "synonym", "evidence": [ { "id": "XP_007652346", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652346" } ] } ], "protein_names": [ { "name": "Ribosomal biogenesis protein LAS1L isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7K0D7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0D7/entry#names_and_taxonomy" } ] }, { "name": "ribosomal biogenesis protein LAS1L isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007652346", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652346" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003616217.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007652346", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652346" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K0D7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0D7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Las1l", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0D7", "locus": {} } ], "crossref": [ { "id": "A0A9J7K0D7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K0D7", "database": "AlphaFoldDB", "categories": [] }, { "id": "100774247", "url": "https://www.ncbi.nlm.nih.gov/gene/100774247", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007174", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007174", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100774247", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774247", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QCNKQVS", "url": "https://omabrowser.org/oma/group/QCNKQVS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7K0D7", "url": "https://www.orthodb.org/?gene=A0A9J7K0D7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3IGU3", "url": "https://www.orthodb.org/?gene=G3IGU3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15002", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15002", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15002:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15002:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04031", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04031", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007652346", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652346", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GID3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GID3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GID3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GID3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K0D7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0D7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K0D7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0D7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KBZ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBZ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KBZ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBZ0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3IGU3", "url": "https://www.uniprot.org/uniprotkb/G3IGU3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3IGU3-1", "url": "https://www.uniprot.org/uniprotkb/G3IGU3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MERVWRAWDGQSFKEDQPEPPSPEGIVVSWLSRAEWDQVTVYLFCDDLKLQQYALNRITVWRSRLGNELPLAVASTADLIRCKLMDVAGGLGTDELRLLYGMALVRFVNLISERKTKCSNLPLKYLAQEVNIPDWIVELRHKLTHKKMPHINDCRRGCYFVLGWLQKTYWSRQLEDSLKDTWELEEDLIEIEEQQEEEGEIIVDDVMEENPEPQDDDKDDELAVEDDANDKDNKEAASHPEPSPRHKELYEKARELLVAYEEEQFKVLEKYRHLPQAVKVWNNLSPCVQCILEELKSITWENRNAVLDAFLDDGFLIPTFEQLAALQIEYEDGQTEVKKGEVTEPNSHKNIDLNDVLVPKPFSQFWQPLLRGLHSQTFTQALLERMFSEMSTLGNRGIRPTYILRWTVELIVANTKTGRNARRFSASQWEARKSWRLFNCSASLDWPQVVESCLGSPCWASPQLLQLVFKAMGQVLPDGEQEKLLRVCSIYTQSGENDAAKTSAASSSIGKNPYTLDTLHQDLKQSGANCESEENVQQKDQGSLKDAKQGEENEDEGEEQEENEEVQDEEEEEEEQKVFQDKMEEDVEESDLEGEEEEVDEDEDDDDEDDDDEDDDDDEDRMEWGPFSFMKGAYVFENTRIASRKREALHGSAWQVSPEDVRWGTFPIGRIPGQTDDPAELVLDNYDTMYLLDQPVLEHRLEPPKSRNCTLNLSCCGGSNNSSSSSSNSGGNLEGLLWSQGQLHGLKAGLQLF", "length": 753, "header": "tr|A0A9J7K0D7-1|A0A9J7K0D7_CRIGR Isoform 1 of Ribosomal biogenesis protein LAS1L isoform X1 OS=Cricetulus griseus OX=10029 GN=Las1l PE=4 SV=1 CANONICAL=A0A9J7K0D7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GID3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GID3/entry", "sequence": { "sequence": "MERVWRAWDGQSFKEDQPEPPSPEGIVVSWLSRAEWDQVTVYLFCDDLKLQQYALNRITVWRSRLGNELPLAVASTADLIRCKLMDVAGGLGTDELRLLYGMALVRFVNLISERKTKCSNLPLKYLAQEVNIPDWIVELRHKLTHKKMPHINDCRRGCYFVLGWLQKTYWSRQLEDSLKDTWELEEDLIEIEEQQEEEGEIIVDDVMEENPEPQDDDKDDELAVEDDANDKDNKEAASHPEPSPRHKELYEKARELLVAYEEEQFKVLEKYRHLPQAVKVWNNLSPCVQCILEELKSITWENRNAVLDAFLDDGFLIPTFEQLAALQIEYEDGQTEVKKGEVTEPNSHKNIDLNDVLVPKPFSQFWQPLLRGLHSQTFTQALLERMFSEMSTLGNRGIRPTYILRWTVELIVANTKTGRNARRFSASQWEARKSWRLFNCSASLDWPQVVESCLGSPCWASPQLLQLVFKAMGQVLPDGEQEKLLRVCSIYTQSGENDAAKTSAASSSIGKNPYTLDTLHQDLKQSGANCESEENVQQKDQGSLKDAKQGEENEDEGEEQEENEEVQDEEEEEEEQKVFQDKMEEDVEESDLEGEEEEVDEDEDDDDEDDDDEDDDDDEDRMEWGPFSFMKGAYVFENTRIASRKREALHGSAWQVSPEDVRWGTFPIGRIPGQTDDPAELVLDNYDTMYLLDQPVLEHRLEPPKSRNWWK", "length": 711, "header": "tr|A0A9J7GID3-1|A0A9J7K0D7_CRIGR Computationally mapped isoform of Ribosomal biogenesis protein LAS1L isoform X1 OS=Cricetulus griseus OX=10029 GN=Las1l PE=4 SV=1 CANONICAL=A0A9J7K0D7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K0D7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0D7/entry", "sequence": { "sequence": "MERVWRAWDGQSFKEDQPEPPSPEGIVVSWLSRAEWDQVTVYLFCDDLKLQQYALNRITVWRSRLGNELPLAVASTADLIRCKLMDVAGGLGTDELRLLYGMALVRFVNLISERKTKCSNLPLKYLAQEVNIPDWIVELRHKLTHKKMPHINDCRRGCYFVLGWLQKTYWSRQLEDSLKDTWELEEDLIEIEEQQEEEGEIIVDDVMEENPEPQDDDKDDELAVEDDANDKDNKEAASHPEPSPRHKELYEKARELLVAYEEEQFKVLEKYRHLPQAVKVWNNLSPCVQCILEELKSITWENRNAVLDAFLDDGFLIPTFEQLAALQIEYEDGQTEVKKGEVTEPNSHKNIDLNDVLVPKPFSQFWQPLLRGLHSQTFTQALLERMFSEMSTLGNRGIRPTYILRWTVELIVANTKTGRNARRFSASQWEARKSWRLFNCSASLDWPQVVESCLGSPCWASPQLLQLVFKAMGQVLPDGEQEKLLRVCSIYTQSGENDAAKTSAASSSIGKNPYTLDTLHQDLKQSGANCESEENVQQKDQGSLKDAKQGEENEDEGEEQEENEEVQDEEEEEEEQKVFQDKMEEDVEESDLEGEEEEVDEDEDDDDEDDDDEDDDDDEDRMEWGPFSFMKGAYVFENTRIASRKREALHGSAWQVSPEDVRWGTFPIGRIPGQTDDPAELVLDNYDTMYLLDQPVLEHRLEPPKSRNCTLNLSCCGGSNNSSSSSSNSGGNLEGLLWSQGQLHGLKAGLQLF", "length": 753, "header": "tr|A0A9J7K0D7-1|A0A9J7K0D7_CRIGR Isoform 1 of Ribosomal biogenesis protein LAS1L isoform X1 OS=Cricetulus griseus OX=10029 GN=Las1l PE=4 SV=1 CANONICAL=A0A9J7K0D7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KBZ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBZ0/entry", "sequence": { "sequence": "MERVWRAWDGQSFKEDQPEPPSPEGIVVSWLSRAEWDQVTVYLFCDDLKLQQYALNRITVWRSRLGNELPLAVASTADLIRCKLMDVAGGLGTDELRLLYGMALVRFVNLISERKTKCSNLPLKYLAQEVNIPDWIVELRHKLTHKKMPHINDCRRGCYFVLGWLQKTYWSRQLEDSLKDTWELEEDLIEIEEQQEEEGEIIVDDVMEENPEPQDDDKDDELAVEDDANDKDNKEAASHPEPSPRHKELYEKARELLVAYEEEQFKVLEKYRHLPQAVKVWNNLSPCVQCILEELKSITWENRNAVLDAFLDDGFLIPTFEQLAALQIEYEDGQTEVKKGEVTEPNSHKNIDLNDVLVPKPFSQFWQPLLRGLHSQTFTQALLERMFSEMSTLGNRGIRPTYILRWTVELIVANTKTGRNARRFSASQWEARKSWRLFNCSASLDWPQVVESCLGSPCWASPQLLQLACRVEAAGLGEVWTTEIFSQPKHIRGMRHMPAVTAAHLESSKPWGRSCQMGSRRSCCVSVPSILRVERMMQQRQAQLPLPLGKIHTHWIPYIRT", "length": 561, "header": "tr|A0A9J7KBZ0-1|A0A9J7KBZ0_CRIGR Computationally mapped isoform of Ribosomal biogenesis protein LAS1L isoform X4 OS=Cricetulus griseus OX=10029 GN=Las1l PE=4 SV=1 CANONICAL=A0A9J7K0D7-1" }, "locus": {} }, { "isoform_ac": "G3IGU3-1", "url": "https://www.uniprot.org/uniprotkb/G3IGU3/entry", "sequence": { "sequence": "MERVWRAWDGQSFKEDQPEPPSPEGIVVSWLSRAEWDQVTVYLFCDDLKLQQYALNRITVWRSRLGNELPLAVASTADLIRCKLMDVAGGLGTDELRLLYGMALVRFVNLISERKTKCSNLPLKYLAQEVNIPDWIVELRHKLTHKKMPHINDCRRGCYFVLGWLQKTYWSRQLEDSLKDTWELEEDLIEIEEQQEEEGEIIVDDVMEENPEPQDDDKDDELAVEDDANDKDNKEAASHPEPSPRHKELYEKARELLVAYEEEQFKVLEKYRHLPQAVKVWNNLSPCVQCILEELKSITWENRNAVLDAFLDDGFLIPTFEQLAALQIEYEENIDLNDVLVPKPFSQFWQPLLRGLHSQTFTQALLERMFSEMSTLGNRGIRPTYILRWTVELIVANTKTGRNARRFSASQWEARKSWRLFNCSASLDWPQVVESCLGSPCWASPQLLQLVFKAMGQVLPDGEQEKLLRVCSIYTQSGENDAAKTSAASSSIGKNPYTLDTLHQDLKQSGANCESEENVQQKDQGSLKDAKQGEENEDEGEEQEENEEVQDEEEEEEEQKVFQDKMEEDVEESDLEGEEEEVDEDEDDDDEDDDDEDDDDDEDRMEWGPFSFMKGAYVFENTRIASRKREALHGSAWQVSPEDVRWGTFPIGRIPGQTDDPAELVLDNYDTMYLLDQPVLEHRLEPPKSRNCTLNLSCCGGSNNSSSSSSNSGGNLEGLLWSQGQLHGLKAGLQLF", "length": 736, "header": "tr|G3IGU3-1|A0A9J7K0D7_CRIGR Computationally mapped isoform of Ribosomal biogenesis protein LAS1L isoform X1 OS=Cricetulus griseus OX=10029 GN=Las1l PE=4 SV=1 CANONICAL=A0A9J7K0D7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3IGU3", "url": "https://www.uniprot.org/uniprotkb/G3IGU3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3IGU3", "url": "https://www.uniprot.org/uniprotkb/G3IGU3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100774247", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774247", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A096MJM8-1", "protein_name": "LAS1-like, ribosome biogenesis factor", "gene_name": "Las1l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MERVWRAWDGQSVNENQPDSPGVAGMVVSWLSRAEWEQVTVYLFCDDQKLQQYALNRITVWRSRLGNELPLAVASTADLIRCKLLDVAGGLGTDELRLLYGMALVRFVNLISERKSKSCNLPLKYLAHEVNIPEWIVELRHKLTHKKMPHINDCRRGCYFVLHWLQKTFWSRQLEDSLKETWGMEEDQVEADEPEEEETEIIIDDIIEEIPEFQDDDKGEELAVTDDANTKGNEEVASHPELSPRHKELYEKARELLVSYEEEQFKVLEKYRHLLQAIKVWNNLSPRVQGILEELKSISWENRDAVLDAFLDDGFLIPTYEQLAALQIEYEDGQTEVQKGEVTEPNSHKNIDLNEVLVPKPFSQFWQPLLRGLHSQTFTQALLERMFSELSTLGRTGIRPTYILRWTVELIVANTKTGRNARRFSAGQWEARRSWRLFNCSSTLDWPQVIEACLGSPCWASLQLLQVVFKAMGEVLPDEEQEKLLRVCSIYTQNGESGLAKAVEGSSSSSSSSSSTGKAPYTLDTLHQDLQPPATNCESEGNIQQKEQDNLTDVKPEEEEKENVEEEEEEEKEEAEMEEEEKEEEEEQEQEEHQEEEQEEEEEEEEEQKVFQDQMEADAEESDGLGEEEEVDEDEDDDEDDDYDDDDDDDEDGMDMGGFSLLQGSYVLENTRIMSQKREALQGSAWQLSSDDVRWGIFPIGRVPGQTEDPTELMLDNYDTMYLLDQPVLEHRLEPQKSKSSTLGLCCGSNNNGGVGNMEGLLWNQGQMHGLKAGLQLF", "length": 778 }, "evidence": [ { "id": "A0A9J7K0D7", "url": "https://omabrowser.org/oma/group/A0A9J7K0D7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V0YSK4-1", "protein_name": "LAS1 like ribosome biosis factor", "gene_name": "LAS1L", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAGSAGLAWRRGRQSFSPTRKRLKPLRTVVAWRGRAEWDQVMVGLYCGDSRLQQEALDRVSAWKSRYGPKMPLAVDCTAELIRCKVLDSSGRLRSHELILSYGLALVRFVNLITERKQKMVSIPLRKLAIEVDIPIWVVDLRHELTHGKLPRLALCRKGCDVVLDWLRKTYWSRQLGNNLCEESEEEDEEEEQEEMEANTELDSDAWEVQTPQHEVCQKHEEFHEKVRDVLISYKNEQFQVMQTVQSVSKSRELWSKSSSEVDWILAQIKDLMQENRETVAEVLLSDGFLIPTMDCLKMLNIKYEANKEVWQFKIPQTFYCFWQPLLTSILSRSFTQTLIDKMFMKLKECSDSSDLQSQFLINWISELLTSIARVNSGKKRRCCNKRAYMKELFLQKVPLQWVRLTDNCLEAPCWATPHLLQLILTSRRPRLPRSSRKNLLYLTSIYTEEGGPLSTPGLSSDCSKQPVYTIESLQWRSRLENQVKNEGQTIEKQEHVQERDDIVEEVEEEEEEEITETNPLEGLAHSNIMVAIAEKKAELQGSAWQIVADEVPWKDFPLGKLPGQTDDPDGLMLDNYSMMSLLDQPVRDEWKSSTTNSVELNVPVTGGLLWTQNDFHKIKSGLQLF", "length": 626 }, "evidence": [ { "id": "A0A9J7K0D7", "url": "https://omabrowser.org/oma/group/A0A9J7K0D7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A2BE28-1", "protein_name": "Ribosomal biogenesis protein LAS1L", "gene_name": "Las1l", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDRVWRAWDGQSFKENQPESPSARGIVVSWLSRAEWEQVTVYLFCDDHKLQQYALNRITVWRSRLGNELPLAVASTADLVRCKLIDAAGTLGTDELRLLYGMALVRFVNLISERKTKCSNLPLKYLAQEVNIPDWIVELRHNLTHKKMPHINECRRGCYFVLNWLQKTYWSRQLEGSLKETWELDEDQLDAEDPEEEEREIIADDVLEEIPEPQDDDKDEELAVEDDANTKGNEEVASHPEPSSRHKELYEKARELLVSYEEEQFKVLEKHRHLLQAIKVWNNLSPRVQCILEELKSISWENRDAVLDAFLDDGFLIPTFEQLAALQIEYEDGQTEVQKGEVTEPNSHKNIDLNEVLVPKPFSQFWQPLLRGLHSQTFTQALLERMFSELSTVGSTGIRPTYILRWTVELIVANTKTGRNARRFSASQWEARKSWRLFNCSATLDWPQVIESCLGSPCWASPQLLQVVFKAMGQVLPDEEQEKLLRVCSIYTQNGENGLAKAIEGSSSSSTGKAPYTLDTLHEDLQPPGTNCESEESIQQKEQGNLKDVKQEEKKENEEEEKEEEEMEEEEEEEEEEKEEEEEEQEQEEHQEEEQEEEEEEENQKVFQDQMEADVEESDDVEEEEEVDDEEEDEDDDYDDDEEEDRMEVGAFSLAQGSSVFENTRTTSRKREALQGSAWQVSSEDVRWGTFPLGRLPGQTEDPAELMLDNYDTMYLLDQPVIEHRLEPQKSKSSTLSLCCGGSNTNSSSSSSSGNMEGLLWNQGQMHGLKAGLQLF", "length": 776 }, "evidence": [ { "id": "A0A9J7K0D7", "url": "https://omabrowser.org/oma/group/A0A9J7K0D7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CF03-1", "protein_name": "Ribosomal biogenesis protein LAS1L", "gene_name": "las1l", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MKKETVGKTRHVVPWMNKAEYEHVLEYLYSKEPALQKHALHRISAWKGRFGQSTPVAVESTADLVRCQVLDSTGQLEANDLVLLYGMALVRFVNLITERQQKKVAKPLRRLARKINIPEWVVNLRHDLTHRRLPSLKWCRKGCGFVLDWLHQEYWSRQMGNQLTEDWNSSSDDEGEDDVVKRHEGDLLSRQREIEAHKKIRELLISYEREQFQTYEELAKHGGQGGAWPDASADLSWILTQIKHFATESRDVLVDVLLQDGFLIPTTEQLESLDVDPSEDSVDVFSPSLPRVFFHFWLPLLRVLNSSGFINMILDKLFSELSNEPSTPRMYYIASWISEIILCNSKTETKAHRKQKVSKERIFVNRLHFRWHSLISACVNAPCPATPFLLRQILNDMDKPLPPDAQKNLLQLCSIYTQGYHCDPSAGPSDPAEPVYTLQNLQERLKSNTSQNRDVHSANHTAKTTQIPPTEELQEKLSTETVQERNSALQGSAWTVCTDKVPWKHYPLGKVPGQPEDPSCLVVESFSTFTVFDQQVELDQLPQQHGNRSVPIQSRGASGSDGLLWTHSDMSKLKAGLTLF", "length": 580 }, "evidence": [ { "id": "A0A9J7K0D7", "url": "https://omabrowser.org/oma/group/A0A9J7K0D7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9Y4W2-1", "protein_name": "Ribosomal biogenesis protein LAS1L", "gene_name": "LAS1L", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSWESGAGPGLGSQGMDLVWSAWYGKCVKGKGSLPLSAHGIVVAWLSRAEWDQVTVYLFCDDHKLQRYALNRITVWRSRSGNELPLAVASTADLIRCKLLDVTGGLGTDELRLLYGMALVRFVNLISERKTKFAKVPLKCLAQEVNIPDWIVDLRHELTHKKMPHINDCRRGCYFVLDWLQKTYWCRQLENSLRETWELEEFREGIEEEDQEEDKNIVVDDITEQKPEPQDDGKSTESDVKADGDSKGSEEVDSHCKKALSHKELYERARELLVSYEEEQFTVLEKFRYLPKAIKAWNNPSPRVECVLAELKGVTCENREAVLDAFLDDGFLVPTFEQLAALQIEYEDGQTEVQRGEGTDPKSHKNVDLNDVLVPKPFSQFWQPLLRGLHSQNFTQALLERMLSELPALGISGIRPTYILRWTVELIVANTKTGRNARRFSAGQWEARRGWRLFNCSASLDWPRMVESCLGSPCWASPQLLRIIFKAMGQGLPDEEQEKLLRICSIYTQSGENSLVQEGSEASPIGKSPYTLDSLYWSVKPASSSFGSEAKAQQQEEQGSVNDVKEEEKEEKEVLPDQVEEEEENDDQEEEEEDEDDEDDEEEDRMEVGPFSTGQESPTAENARLLAQKRGALQGSAWQVSSEDVRWDTFPLGRMPGQTEDPAELMLENYDTMYLLDQPVLEQRLEPSTCKTDTLGLSCGVGSGNCSNSSSSNFEGLLWSQGQLHGLKTGLQLF", "length": 734 }, "evidence": [ { "id": "A0A9J7K0D7", "url": "https://omabrowser.org/oma/group/A0A9J7K0D7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "preribosome, large subunit precursor", "id": "GO:0030687", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030687", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K0D7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0D7" } ], "pmid": "" }, { "name": "Las1 complex", "id": "GO:0090730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090730", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K0D7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0D7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "endonuclease activity", "id": "GO:0004519", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004519", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K0D7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0D7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "maturation of 5.8S rRNA", "id": "GO:0000460", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000460", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K0D7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0D7" } ], "pmid": "" }, { "name": "maturation of LSU-rRNA", "id": "GO:0000470", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000470", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K0D7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0D7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 283, "end_pos": 285, "annotation": "n_glycosylation_sequon" }, { "start_pos": 439, "end_pos": 441, "annotation": "n_glycosylation_sequon" }, { "start_pos": 708, "end_pos": 710, "annotation": "n_glycosylation_sequon" }, { "start_pos": 712, "end_pos": 714, "annotation": "n_glycosylation_sequon" }, { "start_pos": 720, "end_pos": 722, "annotation": "n_glycosylation_sequon" }, { "start_pos": 721, "end_pos": 723, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 283, "end_pos": 285 }, { "start_pos": 439, "end_pos": 441 }, { "start_pos": 708, "end_pos": 710 }, { "start_pos": 712, "end_pos": 714 }, { "start_pos": 720, "end_pos": 722 }, { "start_pos": 721, "end_pos": 723 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7K665-1", "uniprot_ac": "A0A9J7K665", "uniprot_id": "A0A9J7K665_CRIGR", "mass": { "chemical_mass": 46354.0, "monoisotopic_mass": 46354.0 }, "refseq": { "ac": "XP_035299154", "name": "WD repeat and SOCS box-containing protein 2 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035299154" }, "gene_names": [ { "name": "Wsb2", "type": "recommended", "evidence": [ { "id": "A0A9J7K665", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K665" } ] }, { "name": "Wsb2", "type": "synonym", "evidence": [ { "id": "XP_035299154", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035299154" } ] } ], "protein_names": [ { "name": "WD repeat and SOCS box-containing protein 2 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_035299154", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035299154" }, { "id": "A0A9J7K665", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K665/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035299154", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035299154" } ] }, { "annotation": "May be a substrate-recognition component of a SCF-like ECS (Elongin-Cullin-SOCS-box protein) E3 ubiquitin ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.", "evidence": [ { "database": "UniProtKB", "id": "G3GU58", "url": "https://www.uniprot.org/uniprotkb/G3GU58#function" }, { "database": "UniProtKB", "id": "ARBA00056629", "url": "https://www.uniprot.org/uniprotkb/ARBA00056629#function" }, { "database": "UniProtKB", "id": "A0A8C2QCV5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCV5#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": 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[ "Protein Classification" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020472", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020472", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036036", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036036", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051983", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051983", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100753469", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753469", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K665", "url": "https://www.orthodb.org/?gene=A0A9J7K665", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3GU58", "url": "https://www.orthodb.org/?gene=G3GU58", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15622", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15622", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15622:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15622:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07525", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07525", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035299154", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035299154", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QCV5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCV5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QCV5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCV5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K665", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K665", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K665-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K665-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3GU58", "url": "https://www.uniprot.org/uniprotkb/G3GU58", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3GU58-1", "url": "https://www.uniprot.org/uniprotkb/G3GU58-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEAGEEPLLLAELKPGRPHQFDWKSSCETWSVAFSPDGSWFAWSQGHCVVKLVPWPLEEQFIPKGFEAKSRSSKNDSKGRGSLKEKTLDCGQIVWGLAFSPWPSPPSRKLWARHHPQVPDVSCLILATGLNDGQIKIWEVQTGLLLLNLSGHQDVVRDLSFTPSGSLILVSASRDKTLRIWDLNKHGKQIQVLSGHLQWVYCCSISPDCSMLCSAAGEKSVFLWSMRSYTLIRKLEGHQSSVVSCDFSPDSALLVTASYDTSVIMWDPYTGERLRSLHHTQLEPPMDDSDVHMSSLRSVCFSPEGLYLATVADDSAHVTFSLSYRLLRIWALELKAPVAFAPMTNGLCCTFFPHGGVIATGTRDGHVQFWTAPRVLSSLKHLCRKALRSFLTTYQVLALPIPKKMKEFLTYRTF", "length": 414, "header": "tr|A0A9J7K665-1|A0A9J7K665_CRIGR Isoform 1 of WD repeat and SOCS box-containing protein 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Wsb2 PE=4 SV=1 CANONICAL=A0A9J7K665-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QCV5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCV5/entry", "sequence": { "sequence": "MEAGEEPLLLAELKPGRPHQFDWKSSCETWSVAFSPDGSWFAWSQGHCVVKLVPWPLEEQFIPKGFEAKSRSSKNDSKGRGSLKEKTLDCGQIVWGLAFSPWPSPPSRKLWARHHPQVPDVSCLILATGLNDGQIKIWEVQTGLLLLNLSGHQDVVRDLSFTPSGSLILVSASRDKTLRIWDLNKHGKQIQVLSGHLQWVYCCSISPDCSMLCSAAGEKSVFLWSMRSYTLIRKLEGHQSSVVSCDFSPDSALLVTASYDTSVIMWDPYTGERLRSLHHTQLEPPMDDSDVHMSSLRSVCFSPEGLYLATVADDRLLRIWALELKAPVAFAPMTNGLCCTFFPHGGVIATGTRDGHVQFWTAPRVLSSLKHLCRKALRSFLTTYQVLALPIPKKMKEFLTYRTF", "length": 404, "header": "tr|A0A8C2QCV5-1|A0A8C2QCV5_CRIGR Computationally mapped isoform of WD repeat and SOCS box-containing protein 2 OS=Cricetulus griseus OX=10029 GN=Wsb2 PE=4 SV=1 CANONICAL=A0A9J7K665-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K665-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K665/entry", "sequence": { "sequence": "MEAGEEPLLLAELKPGRPHQFDWKSSCETWSVAFSPDGSWFAWSQGHCVVKLVPWPLEEQFIPKGFEAKSRSSKNDSKGRGSLKEKTLDCGQIVWGLAFSPWPSPPSRKLWARHHPQVPDVSCLILATGLNDGQIKIWEVQTGLLLLNLSGHQDVVRDLSFTPSGSLILVSASRDKTLRIWDLNKHGKQIQVLSGHLQWVYCCSISPDCSMLCSAAGEKSVFLWSMRSYTLIRKLEGHQSSVVSCDFSPDSALLVTASYDTSVIMWDPYTGERLRSLHHTQLEPPMDDSDVHMSSLRSVCFSPEGLYLATVADDSAHVTFSLSYRLLRIWALELKAPVAFAPMTNGLCCTFFPHGGVIATGTRDGHVQFWTAPRVLSSLKHLCRKALRSFLTTYQVLALPIPKKMKEFLTYRTF", "length": 414, "header": "tr|A0A9J7K665-1|A0A9J7K665_CRIGR Isoform 1 of WD repeat and SOCS box-containing protein 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Wsb2 PE=4 SV=1 CANONICAL=A0A9J7K665-1" }, "locus": {} }, { "isoform_ac": "G3GU58-1", "url": "https://www.uniprot.org/uniprotkb/G3GU58/entry", "sequence": { "sequence": "MMSPSPEEPLLLAELKPGRPHQFDWKSSCETWSVAFSPDGSWFAWSQGHCVVKLVPWPLEEQFIPKGFEAKSRSSKNDSKGRGSLKEKTLDCGQIVWGLAFSPWPSPPSRKLWARHHPQVPDVSCLILATGLNDGQIKIWEVQTGLLLLNLSGHQDVVRDLSFTPSGSLILVSASRDKTLRIWDLNKHGKQIQVLSGHLQWVYCCSISPDCSMLCSAAGEKSVFLWSMRSYTLIRKLEGHQSSVVSCDFSPDSALLVTASYDTSVIMWDPYTGERLRSLHHTQLEPPMDDSDVHMSSLRSVCFSPEGLYLATVADDRLLRIWALELKAPVAFAPMTNGLCCTFFPHGGVIATGTRDGHVQFWTAPRVLSSLKHLCRKALRSFLTTYQVLALPIPKKMKEFLTYRTF", "length": 406, "header": "tr|G3GU58-1|A0A9J7K665_CRIGR Computationally mapped isoform of WD repeat and SOCS box-containing protein 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Wsb2 PE=4 SV=1 CANONICAL=A0A9J7K665-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3GU58", "url": "https://www.uniprot.org/uniprotkb/G3GU58" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3GU58", "url": "https://www.uniprot.org/uniprotkb/G3GU58" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100753469", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753469", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "intracellular signal transduction", "id": "GO:0035556", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035556", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K665", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K665" } ], "pmid": "" }, { "name": "protein polyubiquitination", "id": "GO:0000209", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000209", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K665", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K665" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 148, "end_pos": 150, "annotation": "n_glycosylation_sequon" }, { "start_pos": 75, "end_pos": 77, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7K665", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K665" }, { "id": "PS50225", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50225" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SOCS box", "eco_id": "ECO_0000259", "start_pos": 378, "end_pos": 414, "start_aa": "Ser", "end_aa": "Phe", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": 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{ "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { 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"evidence": [ { "id": "XP_035304105", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304105" } ] } ], "protein_names": [ { "name": "Sperm-associated antigen 7 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7K0V6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0V6/entry#names_and_taxonomy" } ] }, { "name": "sperm-associated antigen 7 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035304105", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304105" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035304105", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304105" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K0V6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0V6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Spag7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0V6", "locus": {} } ], "crossref": [ { "id": "A0A9J7K0V6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K0V6", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd02636", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02636", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100771644", "url": "https://www.ncbi.nlm.nih.gov/gene/100771644", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001374", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001374", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017330", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017330", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034068", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034068", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036867", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036867", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100771644", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771644", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NQSYGFV", "url": "https://omabrowser.org/oma/group/NQSYGFV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7K0V6", "url": "https://www.orthodb.org/?gene=A0A9J7K0V6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3GYC8", "url": "https://www.orthodb.org/?gene=G3GYC8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13498", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13498", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13498:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13498:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01424", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01424", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035304105", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304105", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K0V6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0V6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K0V6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0V6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3GYC8", "url": "https://www.uniprot.org/uniprotkb/G3GYC8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3GYC8-1", "url": "https://www.uniprot.org/uniprotkb/G3GYC8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLTGLLACFLIHPKTTCSGWHHPQWTASPHISHESRQYPHRLACRPILGEQAAHLKKLQEQDKQQKVEFRKRMEKEVSDFIQDSGQVKKKFQPMNKIERSILHDVVEVAGLTSFSFGEDDDCRYVMIFKKEFAPSDEELDSYRHGEEWDPQKAEEKRKLKELAQKQEEEAAKQGPAVVSPASDYKDKYSHLIGKGAAKDAAHMLQANKTYGCVPVANKRDTRSIEEAMNEIRAKKRLRQSGEELPTTS", "length": 248, "header": "tr|A0A9J7K0V6-1|A0A9J7K0V6_CRIGR Isoform 1 of Sperm-associated antigen 7 isoform X2 OS=Cricetulus griseus OX=10029 GN=Spag7 PE=4 SV=1 CANONICAL=A0A9J7K0V6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K0V6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0V6/entry", "sequence": { "sequence": "MLTGLLACFLIHPKTTCSGWHHPQWTASPHISHESRQYPHRLACRPILGEQAAHLKKLQEQDKQQKVEFRKRMEKEVSDFIQDSGQVKKKFQPMNKIERSILHDVVEVAGLTSFSFGEDDDCRYVMIFKKEFAPSDEELDSYRHGEEWDPQKAEEKRKLKELAQKQEEEAAKQGPAVVSPASDYKDKYSHLIGKGAAKDAAHMLQANKTYGCVPVANKRDTRSIEEAMNEIRAKKRLRQSGEELPTTS", "length": 248, "header": "tr|A0A9J7K0V6-1|A0A9J7K0V6_CRIGR Isoform 1 of Sperm-associated antigen 7 isoform X2 OS=Cricetulus griseus OX=10029 GN=Spag7 PE=4 SV=1 CANONICAL=A0A9J7K0V6-1" }, "locus": {} }, { "isoform_ac": "G3GYC8-1", "url": "https://www.uniprot.org/uniprotkb/G3GYC8/entry", "sequence": { "sequence": "MADLLGSILSSMEKPPSLGDQESRRKAREQAAHLKKLQEQDKQQKVEFRKRMEKEVSDFIQDSGQVKKKFQPMNKIERSILHDVVEVAGLTSFSFGEDDDCRYVMIFKKEFAPSDEELDSYRHGEEWDPQKAEEKRKLKELAQKQEEEAAKQGPAVVSPASDYKDKYSHLIGKGAAKDAAHMLQANKTYGCVPVANKRDTRSIEEAMNEIRAKKRLRQSGEELPTTS", "length": 227, "header": "tr|G3GYC8-1|A0A9J7K0V6_CRIGR Computationally mapped isoform of Sperm-associated antigen 7 isoform X2 OS=Cricetulus griseus OX=10029 GN=Spag7 PE=4 SV=1 CANONICAL=A0A9J7K0V6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3GYC8", "url": "https://www.uniprot.org/uniprotkb/G3GYC8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3GYC8", "url": "https://www.uniprot.org/uniprotkb/G3GYC8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100771644", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771644", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZCG4-1", "protein_name": "Sperm-associated antigen 7", "gene_name": "Spag7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADLLGSILSSMEKPPSLGDQESRRKAREQAARLKKLQEQDKQQKVEFRKRMEREVSDFIQDSGQIKKRFQPMNKIERSILHDVVEVAGLTSFSFGEDDDCRYVMIFKKEFAPSDEELDSYRHGEEWDPQKAEEKRKLKELAQKQEEEAAQQGPAVVSPTSDYKDKYSHLIGKGAAKDAAHMLQANKTYGCVPVANKRDTRSIEEAMNEIRAKKRLRQSGEELPTTS", "length": 227 }, "evidence": [ { "id": "A0A9J7K0V6", "url": "https://omabrowser.org/oma/group/A0A9J7K0V6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "O75391-1", "protein_name": "Sperm-associated antigen 7", "gene_name": "SPAG7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MADLLGSILSSMEKPPSLGDQETRRKAREQAARLKKLQEQEKQQKVEFRKRMEKEVSDFIQDSGQIKKKFQPMNKIERSILHDVVEVAGLTSFSFGEDDDCRYVMIFKKEFAPSDEELDSYRRGEEWDPQKAEEKRKLKELAQRQEEEAAQQGPVVVSPASDYKDKYSHLIGKGAAKDAAHMLQANKTYGCVPVANKRDTRSIEEAMNEIRAKKRLRQSGEELPPTS", "length": 227 }, "evidence": [ { "id": "A0A9J7K0V6", "url": "https://omabrowser.org/oma/group/A0A9J7K0V6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q7TNE3-1", "protein_name": "Sperm-associated antigen 7", "gene_name": "Spag7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADLLGSILSSMEKPPSLGDQESRRKAREQAARLKKLQEQDKQQKVEFRKRMEKEVSDFIQDSGQVKKKFQPMNKIERSILHDVVEVAGLTSFSFGEDDDCRYVMIFKKEFAPSDEELDSYRHGEEWDPQKAEEKRKLKELAQKQEEEAAQQGPAVVSPASDYKDKYSHLIGKGAAKDAAHMLQANKTYGCVPVANKRDTRSIEEAMNEIRAKKRLRQSGEELPTTS", "length": 227 }, "evidence": [ { "id": "A0A9J7K0V6", "url": "https://omabrowser.org/oma/group/A0A9J7K0V6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VIL2-1", "protein_name": "R3H domain-containing protein", "gene_name": "Dmel\\CG2608", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MDLLDSILNAMDAPPANNEQQKTLIKKQREMLERMQNKQKEELLRFRKYVDERMGRFAKDDRRCIEFQPLDKVHRSVIHEVAENGGFIAMSFGREDVDRHSVVYKKEHAPGEDEVTARRNGDGWNEEIAKEYAERRRERLAQEQSDKEASTSEAASSGSSTSTSADQDSGEVKPTTNYKAKYAHLIGESAALQAARKTETNQSYGFVPSKNKKDVRSIEQTLADIQAKKRLRLAQQQELEQEQQAQEATTSTEDP", "length": 255 }, "evidence": [ { "id": "A0A9J7K0V6", "url": "https://omabrowser.org/oma/group/A0A9J7K0V6/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K0V6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0V6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K0V6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0V6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 207, "end_pos": 209, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7K0V6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0V6" }, { "id": "PS51061", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51061" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "R3H", "eco_id": "ECO_0000259", "start_pos": 67, "end_pos": 130, "start_aa": "Val", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 207, "end_pos": 209 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7K400-1", "uniprot_ac": "A0A9J7K400", "uniprot_id": "A0A9J7K400_CRIGR", "mass": { "chemical_mass": 27129.0, "monoisotopic_mass": 27129.0 }, "refseq": { "ac": "XP_035296655", "name": "transcription factor MafF isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035296655" }, "gene_names": [ { "name": "Maff", "type": "recommended", "evidence": [ { "id": "A0A9J7K400", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K400" } ] }, { "name": "Maff", "type": "synonym", "evidence": [ { "id": "XP_035296655", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035296655" } ] } ], "protein_names": [ { "name": "Transcription factor MafF isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7K400", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K400/entry#names_and_taxonomy" } ] }, { "name": "transcription factor MafF isoform X1", "type": "synonym", "evidence": [ { "id": "XP_035296655", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035296655" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035296655", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035296655" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K400", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K400" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Maff", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K400", "locus": {} } ], "crossref": [ { "id": "A0A9J7K400", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K400", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd14717", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14717", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100766059", "url": "https://www.ncbi.nlm.nih.gov/gene/100766059", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004826", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004826", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004827", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004827", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008917", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008917", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024874", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024874", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046347", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046347", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100766059", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766059", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K400", "url": "https://www.orthodb.org/?gene=A0A9J7K400", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10129", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10129", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10129:SF25", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10129:SF25", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03131", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03131", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035296655", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035296655", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MZ80", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZ80", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MZ80-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZ80-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FI74", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FI74", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FI74-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FI74-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FLN1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLN1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FLN1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLN1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K400", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K400", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K400-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K400-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRNKDPSEGSGPVDGYTRHPPWHAEAVVRLWCETSTLLENREGGTNHQLGWSMVREDLSKDVAFGKDVDNESLRAAGCGLKRSPALRAPSAKMSADPLSSKALKVKRELSENTPHLSDEALMGLSVRELNRNLRGLSAEEVTRLKQRRRTLKNRGYAASCRVKRVCQKEELQKQKSELEREVDKLARENAAMRLELDALRGKCEALQGFARSVAAARGPTALVAPASVITIVKSTPGPSPAPDPAPCS", "length": 248, "header": "tr|A0A9J7K400-1|A0A9J7K400_CRIGR Isoform 1 of Transcription factor MafF isoform X1 OS=Cricetulus griseus OX=10029 GN=Maff PE=3 SV=1 CANONICAL=A0A9J7K400-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MZ80-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZ80/entry", "sequence": { "sequence": "MSADPLSSKALKVKRELSENTPHLSDEALMGLSVRELNRNLRGLSAEEVTRLKQRRRTLKNRGYAASCRVKRVCQKEELQKQKSELEREVDKLARENAAMRLELDALRGKCEALQGFARSVAAARGPTALVAPASVITIVKSTPGPSPAPDPAPCS", "length": 156, "header": "tr|A0A8C2MZ80-1|A0A8C2MZ80_CRIGR Computationally mapped isoform of Transcription factor MafF isoform X4 OS=Cricetulus griseus OX=10029 GN=Maff PE=3 SV=1 CANONICAL=A0A9J7K400-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FI74-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FI74/entry", "sequence": { "sequence": "MVREDLSKDVAFGKDVDNESLRAAGCGLKRSPALRAPSAKMSADPLSSKALKVKRELSENTPHLSDEALMGLSVRELNRNLRGLSAEEVTRLKQRRRTLKNRGYAASCRVKRVCQKEELQKQKSELEREVDKLARENAAMRLELDALRGKCEALQGFARSVAAARGPTALVAPASVITIVKSTPGPSPAPDPAPCS", "length": 196, "header": "tr|A0A9J7FI74-1|A0A9J7K400_CRIGR Computationally mapped isoform of Transcription factor MafF isoform X1 OS=Cricetulus griseus OX=10029 GN=Maff PE=3 SV=1 CANONICAL=A0A9J7K400-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FLN1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLN1/entry", "sequence": { "sequence": "MRNKDPSEGSGPVDGYTRSPALRAPSAKMSADPLSSKALKVKRELSENTPHLSDEALMGLSVRELNRNLRGLSAEEVTRLKQRRRTLKNRGYAASCRVKRVCQKEELQKQKSELEREVDKLARENAAMRLELDALRGKCEALQGFARSVAAARGPTALVAPASVITIVKSTPGPSPAPDPAPCS", "length": 184, "header": "tr|A0A9J7FLN1-1|A0A9J7K400_CRIGR Computationally mapped isoform of Transcription factor MafF isoform X1 OS=Cricetulus griseus OX=10029 GN=Maff PE=3 SV=1 CANONICAL=A0A9J7K400-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K400-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K400/entry", "sequence": { "sequence": "MRNKDPSEGSGPVDGYTRHPPWHAEAVVRLWCETSTLLENREGGTNHQLGWSMVREDLSKDVAFGKDVDNESLRAAGCGLKRSPALRAPSAKMSADPLSSKALKVKRELSENTPHLSDEALMGLSVRELNRNLRGLSAEEVTRLKQRRRTLKNRGYAASCRVKRVCQKEELQKQKSELEREVDKLARENAAMRLELDALRGKCEALQGFARSVAAARGPTALVAPASVITIVKSTPGPSPAPDPAPCS", "length": 248, "header": "tr|A0A9J7K400-1|A0A9J7K400_CRIGR Isoform 1 of Transcription factor MafF isoform X1 OS=Cricetulus griseus OX=10029 GN=Maff PE=3 SV=1 CANONICAL=A0A9J7K400-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FLN1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLN1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FLN1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLN1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100766059", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766059", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "regulation of epidermal cell differentiation", "id": "GO:0045604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045604", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K400", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K400" } ], "pmid": "" }, { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K400", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K400" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K400", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K400" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K400", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K400" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K400", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K400" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K400", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K400" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K400", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K400" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 70, "end_pos": 72, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7K400", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K400" }, { "id": "PS50217", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50217" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BZIP", "eco_id": "ECO_0000259", "start_pos": 143, "end_pos": 206, "start_aa": "Arg", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 70, "end_pos": 72 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027286323", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286323" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JXV1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXV1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Hnrnpl", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXV1", "locus": {} } ], "crossref": [ { "id": "A0A9J7JXV1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JXV1", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd12699", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12699", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12704", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12704", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12780", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12780", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12785", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12785", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100768344", "url": "https://www.ncbi.nlm.nih.gov/gene/100768344", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006536", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006536", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021790", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021790", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034816", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034816", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034817", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034817", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035005", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035005", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055204", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055204", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768344", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768344", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JXV1", "url": "https://www.orthodb.org/?gene=A0A9J7JXV1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15592", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15592", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF11835", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11835", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13893", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13893", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22976", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22976", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027286323", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286323", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2L9T3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2L9T3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2L9T3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2L9T3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JRM5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRM5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JRM5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRM5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JXV1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXV1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JXV1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXV1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSRRLLPRAEKRRRRLEQRQQPDEQLRRAGAMVKMAAAGGGGGGGRYYGGGNEGGRAPKRLKTENAGDQHGGGGGGGGSGAAGGGGGESYDDPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGEGRGFPSVDSRGSCAPARRPPRKFSPVLPLFPSHPPGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPDYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLCFSTAQHAS", "length": 624, "header": "tr|A0A9J7JXV1-1|A0A9J7JXV1_CRIGR Isoform 1 of Heterogeneous nuclear ribonucleoprotein L isoform X2 OS=Cricetulus griseus OX=10029 GN=Hnrnpl PE=4 SV=1 CANONICAL=A0A9J7JXV1-1" }, "isoforms": [ { "isoform_ac": "A0A8C2L9T3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2L9T3/entry", "sequence": { "sequence": "MPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPDYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLCFSTAQHAS", "length": 456, "header": "tr|A0A8C2L9T3-1|A0A9J7JXV1_CRIGR Computationally mapped isoform of Heterogeneous nuclear ribonucleoprotein L isoform X2 OS=Cricetulus griseus OX=10029 GN=Hnrnpl PE=4 SV=1 CANONICAL=A0A9J7JXV1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JRM5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRM5/entry", "sequence": { "sequence": "MSRRLLPRAEKRRRRLEQRQQPDEQLRRAGAMVKMAAAGGGGGGGRYYGGGNEGGRAPKRLKTENAGDQHGGGGGGGGSGAAGGGGGESYDDPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPDYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLCFSTAQHAS", "length": 587, "header": "tr|A0A9J7JRM5-1|A0A9J7JXV1_CRIGR Computationally mapped isoform of Heterogeneous nuclear ribonucleoprotein L isoform X2 OS=Cricetulus griseus OX=10029 GN=Hnrnpl PE=4 SV=1 CANONICAL=A0A9J7JXV1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JXV1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXV1/entry", "sequence": { "sequence": "MSRRLLPRAEKRRRRLEQRQQPDEQLRRAGAMVKMAAAGGGGGGGRYYGGGNEGGRAPKRLKTENAGDQHGGGGGGGGSGAAGGGGGESYDDPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGEGRGFPSVDSRGSCAPARRPPRKFSPVLPLFPSHPPGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPDYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLCFSTAQHAS", "length": 624, "header": "tr|A0A9J7JXV1-1|A0A9J7JXV1_CRIGR Isoform 1 of Heterogeneous nuclear ribonucleoprotein L isoform X2 OS=Cricetulus griseus OX=10029 GN=Hnrnpl PE=4 SV=1 CANONICAL=A0A9J7JXV1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2L9T3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2L9T3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2L9T3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2L9T3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100768344", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768344", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JXV1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXV1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JXV1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXV1" } ], "pmid": "" }, { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JXV1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXV1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "mRNA processing", "id": "GO:0006397", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006397", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JXV1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXV1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 170, "end_pos": 172, "annotation": "n_glycosylation_sequon" }, { "start_pos": 287, "end_pos": 289, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JXV1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXV1" }, { "id": "PS50102", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50102" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRM", "eco_id": "ECO_0000259", "start_pos": 100, "end_pos": 174, "start_aa": "Pro", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 170, "end_pos": 172 }, { "start_pos": 287, "end_pos": 289 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7K4A1-1", "uniprot_ac": "A0A9J7K4A1", "uniprot_id": "A0A9J7K4A1_CRIGR", "mass": { "chemical_mass": 19780.0, "monoisotopic_mass": 19780.0 }, "refseq": { "ac": "XP_035302004", "name": "ankyrin repeat domain-containing protein 39 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302004" }, "gene_names": [ { "name": "Ankrd39", "type": "recommended", "evidence": [ { "id": "A0A9J7K4A1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4A1" } ] }, { "name": "Ankrd39", "type": "synonym", "evidence": [ { "id": "XP_035302004", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302004" } ] } ], "protein_names": [ { "name": "Ankyrin repeat domain-containing protein 39 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7K4A1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4A1/entry#names_and_taxonomy" } ] }, { "name": "ankyrin repeat domain-containing protein 39 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_035302004", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302004" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613687.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035302004", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302004" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K4A1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4A1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ankrd39", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4A1", "locus": {} } ], "crossref": [ { "id": "A0A9J7K4A1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K4A1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100769174", "url": "https://www.ncbi.nlm.nih.gov/gene/100769174", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769174", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769174", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YCGHLNV", "url": "https://omabrowser.org/oma/group/YCGHLNV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2LP45", "url": "https://www.orthodb.org/?gene=A0A8C2LP45", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7EYI9", "url": "https://www.orthodb.org/?gene=A0A9J7EYI9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7K4A1", "url": "https://www.orthodb.org/?gene=A0A9J7K4A1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24171", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24171", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24171:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24171:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13637", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13637", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035302004", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302004", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LP45", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LP45", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LP45-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LP45-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EYI9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYI9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EYI9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYI9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K4A1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4A1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K4A1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4A1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KFE3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFE3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KFE3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFE3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAPQPCADGSCCSHPGAVPGAQQTLEEMDFERGEKGIWSAALNGDLGRVKHFIQKATDPSQPDSAGYTALHYASRNGHYAVCQFLLESGAKCDAQTHGGATALHRASYCGHTEIARLLLSHGSNPRLVDDDGMTSLHKAAEKGHEDICSLLLQHSPALKAVRDHKARLACDLLPCNSGLRDLLAS", "length": 186, "header": "tr|A0A9J7K4A1-1|A0A9J7K4A1_CRIGR Isoform 1 of Ankyrin repeat domain-containing protein 39 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ankrd39 PE=4 SV=1 CANONICAL=A0A9J7K4A1-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LP45-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LP45/entry", "sequence": { "sequence": "MAAPQPCADGSCCSHPGAVPGAQQTLEEMDFERGIWSAALNGDLGRVKHFIQKATDPSQPDSAGYTALHYASRNGHYAVCQFLLESGAKCDAQTHGGATALHRASYCGHTEIARLLLSHGSNPRLVDDDGMTSLHKAAEKGHEDICSLLLQHSPALKAVRDHKARLACDLLPCNSGLRDLLAS", "length": 183, "header": "tr|A0A8C2LP45-1|A0A9J7K4A1_CRIGR Computationally mapped isoform of Ankyrin repeat domain-containing protein 39 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ankrd39 PE=4 SV=1 CANONICAL=A0A9J7K4A1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7EYI9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EYI9/entry", "sequence": { "sequence": "MAAPQPCADGSCCSHPGAVPGAQQTLEEMDFERGIWSAALNGDLGRVKHFIQKATDPSQPDSAGYTALHYASRNGHYAVCQFLLESGAKCDAQTHGGATALHRASYCGHTEIARLLLSHGSNPRLVDDDGMTSLHKVCPYIPSSSCLCLHRLQRRVTRTFALSCYNTAQP", "length": 170, "header": "tr|A0A9J7EYI9-1|A0A9J7K4A1_CRIGR Computationally mapped isoform of Ankyrin repeat domain-containing protein 39 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ankrd39 PE=4 SV=1 CANONICAL=A0A9J7K4A1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K4A1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4A1/entry", "sequence": { "sequence": "MAAPQPCADGSCCSHPGAVPGAQQTLEEMDFERGEKGIWSAALNGDLGRVKHFIQKATDPSQPDSAGYTALHYASRNGHYAVCQFLLESGAKCDAQTHGGATALHRASYCGHTEIARLLLSHGSNPRLVDDDGMTSLHKAAEKGHEDICSLLLQHSPALKAVRDHKARLACDLLPCNSGLRDLLAS", "length": 186, "header": "tr|A0A9J7K4A1-1|A0A9J7K4A1_CRIGR Isoform 1 of Ankyrin repeat domain-containing protein 39 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ankrd39 PE=4 SV=1 CANONICAL=A0A9J7K4A1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KFE3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFE3/entry", "sequence": { "sequence": "MRTGIWSAALNGDLGRVKHFIQKATDPSQPDSAGYTALHYASRNGHYAVCQFLLESGAKCDAQTHGGATALHRASYCGHTEIARLLLSHGSNPRLVDDDGMTSLHKAAEKGHEDICSLLLQHSPALKAVRDHKARLACDLLPCNSGLRDLLAS", "length": 153, "header": "tr|A0A9J7KFE3-1|A0A9J7KFE3_CRIGR Computationally mapped isoform of Ankyrin repeat domain-containing protein 39 isoform X3 OS=Cricetulus griseus OX=10029 GN=Ankrd39 PE=4 SV=1 CANONICAL=A0A9J7K4A1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LP45", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LP45" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LP45", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LP45" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769174", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769174", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8W4FCQ3-1", "protein_name": "Ankyrin repeat domain 39", "gene_name": "ANKRD39", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAAPRSCAEGPCCSHPSAAPSVQQTLDEMDFERGIWSAALNGDLGRVKYLIQKAADPSQPDSAGYTALHYASRNGHYAVCQFLLESGAKCDAQTRGGATALHRASYCGHTDIARLLLSHGCNPQLVDADGMTSLHKAAEQGHVDICSLLLQHSPALKAIRDRKARLACDLLPHNSDLRDLLAG", "length": 183 }, "evidence": [ { "id": "A0A9J7K4A1", "url": "https://omabrowser.org/oma/group/A0A9J7K4A1/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A9C3P2-1", "protein_name": "Ankyrin repeat domain-containing protein 39", "gene_name": "ankrd39", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNPHGGQCTCSGHLPTPSVHQTLEEMDFERGIWSAAMDGDVERVRMLIKKGTDPNMRDQANYTALHYASRAGHVSVCELLLDCGACVNAQTHGGATPLHRAAYCGHQRVLKLLLERGADPGLTDDDGATPLHKAAEQRCFVVCKLLVKRFPALRDIKDKRSRIPFDLCPEDDSKWEFLKPAQ", "length": 182 }, "evidence": [ { "id": "A0A9J7K4A1", "url": "https://omabrowser.org/oma/group/A0A9J7K4A1/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q53RE8-1", "protein_name": "Ankyrin repeat domain-containing protein 39", "gene_name": "ANKRD39", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATPRPCADGPCCSHPSAVLGVQQTLEEMDFERGIWSAALNGDLGRVKHLIQKAEDPSQPDSAGYTALHYASRNGHYAVCQFLLESGAKCDAQTHGGATALHRASYCGHTEIARLLLSHGSNPRVVDDDGMTSLHKAAERGHGDICSLLLQHSPALKAIRDRKARLACDLLPCNSDLRDLLSS", "length": 183 }, "evidence": [ { "id": "A0A9J7K4A1", "url": "https://omabrowser.org/oma/group/A0A9J7K4A1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q54KH3-1", "protein_name": "Ankyrin repeat domain-containing protein 39 homolog", "gene_name": "ankrd39", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDKHHNHECNGHECNHVQVDSVTQSLDELNFERGIWGSIINSDFKKVEQLLYKNSSLSNTMDSSGYYPLHYAVRNDKNNDIVQLLLDNGANINCQTSGGATPLHRSCFCNSINNTKLLLKKGITKVDLIDSDGMTPLHKAYQQGNMEIVNLLLQFGADPNILDKNKMKPIQLLK", "length": 174 }, "evidence": [ { "id": "A0A9J7K4A1", "url": "https://omabrowser.org/oma/group/A0A9J7K4A1/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q7KTP7-1", "protein_name": "Ankyrin repeat domain-containing protein 39", "gene_name": "CG5822", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MDPHSADNCKCHKQTQPAQQTLSDMDFDRGIWNAAIYNEVERVREFIKKGQSMARDDCDYTALHYAARNGNEPICKLLLDEGKADVNAVTKAGATALHRAAMMGHLEIVKLLVEHKANLLLQDESGQTALHRAVMRGHLEVCRILLAKEPTLKLVKDKKDKIAFEYIMENANDDFKLLLKP", "length": 181 }, "evidence": [ { "id": "A0A9J7K4A1", "url": "https://omabrowser.org/oma/group/A0A9J7K4A1/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9D2X0-1", "protein_name": "Ankyrin repeat domain-containing protein 39", "gene_name": "Ankrd39", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAPHLCADGSCCSHPSAVPGVQQTLEEMDFDRGIWSAALNGDLGRVKYFIQKATDPSQPDSAGYTALHYASRNGHYAVCQFLLESGAKCDAQTHGGATALHRASYCGHTEIARLLLSHGSNPWLVDNDGMTSLHKAAEKGHEDICSLLLQHSPALKAVRDRKARLACDLLPCNSGLWDLLAS", "length": 183 }, "evidence": [ { "id": "A0A9J7K4A1", "url": "https://omabrowser.org/oma/group/A0A9J7K4A1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7K432-1", "uniprot_ac": "A0A9J7K432", "uniprot_id": "A0A9J7K432_CRIGR", "mass": { "chemical_mass": 80920.0, "monoisotopic_mass": 80920.0 }, "refseq": { "ac": "XP_035308427", "name": "transmembrane protein 260 isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308427" }, "gene_names": [ { "name": "Tmem260", "type": "recommended", "evidence": [ { "id": "A0A9J7K432", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K432" } ] }, { "name": "Tmem260", "type": "synonym", "evidence": [ { "id": "XP_035308427", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308427" } ] } ], "protein_names": [ { "name": "Transmembrane protein 260 isoform X4", "type": "synonym", "evidence": [ { "id": "A0A9J7K432", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K432/entry#names_and_taxonomy" } ] }, { "name": "transmembrane protein 260 isoform X4", "type": "synonym", "evidence": [ { "id": "XP_035308427", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308427" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308427", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308427" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K432", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K432" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tmem260", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K432", "locus": {} } ], "crossref": [ { "id": "A0A9J7K432", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K432", "database": "AlphaFoldDB", "categories": [] }, { "id": "100767682", "url": "https://www.ncbi.nlm.nih.gov/gene/100767682", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR021280", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021280", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052724", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052724", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR060492", "url": "https://www.ebi.ac.uk/interpro/entry/IPR060492", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100767682", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767682", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K432", "url": "https://www.orthodb.org/?gene=A0A9J7K432", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16214", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16214", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16214:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16214:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF11028", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11028", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF28495", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28495", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035308427", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308427", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LZR1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LZR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LZR1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LZR1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J587", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J587", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J587-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J587-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K432", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K432", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K432-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K432-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KF75", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KF75", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KF75-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KF75-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGLHGDGGDPAARAGPWGSGGLRGSVAVFAAVAAVFTLTLPRSLPGGDSGELITAAHELGVAHPPGYPLFTLVASLAITLFPFGSVAYRVNLLCGLFGAVAASLLFFTVFRLSGSHAGGILAAGVFSFSRLTWQWSIAAEVFSLNNLFVGLLMALTVRFEEAAAAKERSKIAVIGAFSCGLSLCNQHTIVLYVLCIIPWILFRLLKEKELAFSSLLKLTLAFSAGLLPYIYLPVSSYLNHARWTWGDQTTLRGFLTHFLREEYGTFSLAKSEIGSSVSTILLSQIINMKTELSFNIQALAVWANICLARKDRRQSSLVWLFTGMLFIYSLFFAWRANLDISKPLFMGVVERFWMQSNAVVAVLAGLGLATLVSETNRVLNCNGIQYLEWLSATLFVTYQIYSNYSICDQRTNNVIDQFARNLLDSMPRDAIILLRGDLPGNSLRYLHYCEGLRPDVSLVDQEMMTYEWYLPKMARHLPGVHFPGDRWNPVEGVLPSGMVTFNLYHFLEMNKQKETFVCIGIHEGDPTWKKGYSLWPWGSCDKLVPSRIVFNPEEWIKSTASIYNWTEEYGRFDPSSWESVANEEMWQARMKTPFFIFNLAETAKVPPNVKAQLYTHAYKKICQDNNGMPTFAVFQLYKEIVYFQEEHPVNWHKNYAIACERMLRLPGTDAKPEVLLSETIRHFRLYTQKAQSDPQRADIIAALKHLRRELQSLRNTKKV", "length": 719, "header": "tr|A0A9J7K432-1|A0A9J7K432_CRIGR Isoform 1 of Transmembrane protein 260 isoform X4 OS=Cricetulus griseus OX=10029 GN=Tmem260 PE=4 SV=1 CANONICAL=A0A9J7K432-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LZR1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LZR1/entry", "sequence": { "sequence": "MGLHGDGGDPAARAGPWGSGGLRGSVAVFAAVAAVFTLTLPRSLPGGDSGELITAAHELGVAHPPGYPLFTLVASLAITLFPFGSVAYRVNLLCGLFGAVAASLLFFTVFRLSGSHAGGILAAGVFSFSRLTWQWSIAAEVFSLNNLFVGLLMALTVRFEEAAAAKERSKIAVIGAFSCGLSLCNQHTIVLYVLCIIPWILFRLLKEKELAFSSLLKLTLAFSAGLLPYIYLPVSSYLNHARWTWGDQTTLRGFLTHFLREEYGTFSLAKSEIGSSVSTILLSQIINMKTELSFNIQALAVWANICLARKDRRQSSLVWLFTGMLFIYSLFFAWRANLDISKPLFMGVVERFWMQSNAVVAVLAGLGLATLVSETNRVLNCNGIQYLEWLSATLFVTYQIYSNYSICDQRTNNVIDQFARNLLDSMPRDAIILLRGDLPGNSLRYLHYCEGLRPDVSLVDQEMMTYEWYLPKMARHLPGVHFPGDRWNPVEGVLPSGMVTFNLYHFLEMNKQKETFVCIGIHEGDPTWKKGYSLWPWGSCDKLVPSRIVFNPEEWIKSTASIYNWTEEYGRFDPSSWESVANEEMWQARMKTPFFIFNLAETAKVPPNVKAQLYTHAYKLYKEIVYFQEEHPVNWHKNYAIACERMLRLPGTDAKPEVLLSETIRHFRLYTQKAQSDPQRADIIAALKHLRRELQSLRNTKKV", "length": 703, "header": "tr|A0A8C2LZR1-1|A0A9J7K432_CRIGR Computationally mapped isoform of Transmembrane protein 260 isoform X4 OS=Cricetulus griseus OX=10029 GN=Tmem260 PE=4 SV=1 CANONICAL=A0A9J7K432-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J587-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J587/entry", "sequence": { "sequence": "MGLHGDGGDPAARAGPWGSGGLRGSVAVFAAVAAVFTLTLPRSLPGGDSGELITAAHELGVAHPPGYPLFTLVASLAITLFPFGSVAYRVNLLCGLFGAVAASLLFFTVFRLSGSHAGGILAAGVFSFSRLTWQWSIAAEVFSLNNLFVGLLMALTVRFEEAAAAKERSKIAVIGAFSCGLSLCNQHTIVLYVLCIIPWILFRLLKEKELAFSSLLKLTLAFSAGLLPYIYLPVSSYLNHARWTWGDQTTLRGFLTHFLREEYGTFSLAKSEIGSSVSTILLSQIINMKTELSFNIQALAVWANICLARKDRRQSSLVWLFTGMLFIYSLFFAWRANLDISKPLFMGVVERFWMQSNAVVAVLAGLGLATLVSETNRVLNCNGIQYLEWLSATLFVTYQIYSNYSICDQRTNNVIDQFARNLLDSMPRDAIILLRGDLPGNSLRYLHYCEGLRPDVSLVDQEMMTYEWYLPKMARHLPGVHFPGDRWNPVEGVLPSGMVTFNLYHFLEMNKQKETFVCIGIHEGDPTWKKGYSLWPWGSCDKLVPSRIVFNPEEWIKSTASIYNWTEEYGRYEQQV", "length": 576, "header": "tr|A0A9J7J587-1|A0A9J7J587_CRIGR Computationally mapped isoform of Transmembrane protein 260 isoform X7 OS=Cricetulus griseus OX=10029 GN=Tmem260 PE=4 SV=1 CANONICAL=A0A9J7K432-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K432-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K432/entry", "sequence": { "sequence": "MGLHGDGGDPAARAGPWGSGGLRGSVAVFAAVAAVFTLTLPRSLPGGDSGELITAAHELGVAHPPGYPLFTLVASLAITLFPFGSVAYRVNLLCGLFGAVAASLLFFTVFRLSGSHAGGILAAGVFSFSRLTWQWSIAAEVFSLNNLFVGLLMALTVRFEEAAAAKERSKIAVIGAFSCGLSLCNQHTIVLYVLCIIPWILFRLLKEKELAFSSLLKLTLAFSAGLLPYIYLPVSSYLNHARWTWGDQTTLRGFLTHFLREEYGTFSLAKSEIGSSVSTILLSQIINMKTELSFNIQALAVWANICLARKDRRQSSLVWLFTGMLFIYSLFFAWRANLDISKPLFMGVVERFWMQSNAVVAVLAGLGLATLVSETNRVLNCNGIQYLEWLSATLFVTYQIYSNYSICDQRTNNVIDQFARNLLDSMPRDAIILLRGDLPGNSLRYLHYCEGLRPDVSLVDQEMMTYEWYLPKMARHLPGVHFPGDRWNPVEGVLPSGMVTFNLYHFLEMNKQKETFVCIGIHEGDPTWKKGYSLWPWGSCDKLVPSRIVFNPEEWIKSTASIYNWTEEYGRFDPSSWESVANEEMWQARMKTPFFIFNLAETAKVPPNVKAQLYTHAYKKICQDNNGMPTFAVFQLYKEIVYFQEEHPVNWHKNYAIACERMLRLPGTDAKPEVLLSETIRHFRLYTQKAQSDPQRADIIAALKHLRRELQSLRNTKKV", "length": 719, "header": "tr|A0A9J7K432-1|A0A9J7K432_CRIGR Isoform 1 of Transmembrane protein 260 isoform X4 OS=Cricetulus griseus OX=10029 GN=Tmem260 PE=4 SV=1 CANONICAL=A0A9J7K432-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KF75-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KF75/entry", "sequence": { "sequence": "MLKTSTVLSSRSFRLSGSHAGGILAAGVFSFSRLTWQWSIAAEVFSLNNLFVGLLMALTVRFEEAAAAKERSKIAVIGAFSCGLSLCNQHTIVLYVLCIIPWILFRLLKEKELAFSSLLKLTLAFSAGLLPYIYLPVSSYLNHARWTWGDQTTLRGFLTHFLREEYGTFSLAKSEIGSSVSTILLSQIINMKTELSFNIQALAVWANICLARKDRRQSSLVWLFTGMLFIYSLFFAWRANLDISKPLFMGVVERFWMQSNAVVAVLAGLGLATLVSETNRVLNCNGIQYLEWLSATLFVTYQIYSNYSICDQRTNNVIDQFARNLLDSMPRDAIILLRGDLPGNSLRYLHYCEGLRPDVSLVDQEMMTYEWYLPKMARHLPGVHFPGDRWNPVEGVLPSGMVTFNLYHFLEMNKQKETFVCIGIHEGDPTWKKGYSLWPWGSCDKLVPSRIVFNPEEWIKSTASIYNWTEEYGRFDPSSWESVANEEMWQARMKTPFFIFNLAETAKVPPNVKAQLYTHAYKKICQDNNGMPTFAVFQLYKEIVYFQEEHPVNWHKNYAIACERMLRLPGTDAKPEVLLSETIRHFRLYTQKAQSDPQRADIIAALKHLRRELQSLRNTKKV", "length": 622, "header": "tr|A0A9J7KF75-1|A0A9J7KF75_CRIGR Computationally mapped isoform of Transmembrane protein 260 isoform X6 OS=Cricetulus griseus OX=10029 GN=Tmem260 PE=4 SV=1 CANONICAL=A0A9J7K432-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LZR1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LZR1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LZR1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LZR1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100767682", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767682", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "dolichyl-phosphate-mannose-protein mannosyltransferase activity", "id": "GO:0004169", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004169", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K432", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K432" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K432", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K432" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein maturation", "id": "GO:0051604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051604", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K432", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K432" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 403, "end_pos": 405, "annotation": "n_glycosylation_sequon" }, { "start_pos": 564, "end_pos": 566, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7K432", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K432" }, { "id": "PF11028", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11028" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Protein O-mannosyl-transferase TMEM260 N-terminal", "eco_id": "ECO_0000259", "start_pos": 48, "end_pos": 206, "start_aa": "Asp", "end_aa": "Lys", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7K432", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K432" }, { "id": "PF28495", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28495" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TMEM260-associated", "eco_id": "ECO_0000259", "start_pos": 417, "end_pos": 476, "start_aa": "Gln", "end_aa": "His", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 403, "end_pos": 405 }, { "start_pos": 564, "end_pos": 566 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7K1L2-1", "uniprot_ac": "A0A9J7K1L2", "uniprot_id": "A0A9J7K1L2_CRIGR", "mass": { "chemical_mass": 20765.0, "monoisotopic_mass": 20765.0 }, "refseq": { "ac": "XP_027287213", "name": "sterile alpha motif domain-containing protein 12 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287213" }, "gene_names": [ { "name": "Samd12", "type": "recommended", "evidence": [ { "id": "A0A9J7K1L2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1L2" } ] }, { "name": "Samd12", "type": "synonym", "evidence": [ { "id": "XP_027287213", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287213" } ] } ], "protein_names": [ { "name": "Sterile alpha motif domain-containing protein 12 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7K1L2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1L2/entry#names_and_taxonomy" } ] }, { "name": "sterile alpha motif domain-containing protein 12 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027287213", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287213" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048603.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027287213", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287213" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K1L2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1L2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Samd12", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1L2", "locus": {} } ], "crossref": [ { "id": "A0A9J7K1L2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K1L2", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd09510", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09510", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100753622", "url": "https://www.ncbi.nlm.nih.gov/gene/100753622", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001660", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001660", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013761", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013761", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039144", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039144", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052268", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052268", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100753622", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753622", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K1L2", "url": "https://www.orthodb.org/?gene=A0A9J7K1L2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR20843", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20843", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR20843:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20843:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07647", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07647", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027287213", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287213", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M8B2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8B2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M8B2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8B2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K035", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K035", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K035-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K035-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K1L2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1L2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K1L2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1L2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAVEALHCGLNPRGIDHPAHAEGIKLQIEGEGIESQSIKNKNFQKVPDQKGTPKRLQGEAETAKSATVKLSKPVALWTQQDVCKWLKKHCPNQYQIYSESFKQHDITGRALLRLTDKKLERLGIAQENQRQHILQQVLQLKVREEVRNLQLLTQEAVNKPVPRTTLTTLMMAAHKLRASVEGSP", "length": 184, "header": "tr|A0A9J7K1L2-1|A0A9J7K1L2_CRIGR Isoform 1 of Sterile alpha motif domain-containing protein 12 isoform X2 OS=Cricetulus griseus OX=10029 GN=Samd12 PE=4 SV=1 CANONICAL=A0A9J7K1L2-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M8B2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8B2/entry", "sequence": { "sequence": "MAVEALHCGLNPRGIDHPAHAEGIKLQIEGEGIESQSIKNKNFQKVPDQKGTPKRLQGEAETAKSATVKLSKPVALWTQQDVCKWLKKHCPNQYQIYSESFKQHDITGRALLRLTDKKLERLGIAQENQRQHILQQVLQLKVREEVRNLQLLTQASVEGSP", "length": 161, "header": "tr|A0A8C2M8B2-1|A0A9J7K1L2_CRIGR Computationally mapped isoform of Sterile alpha motif domain-containing protein 12 isoform X2 OS=Cricetulus griseus OX=10029 GN=Samd12 PE=4 SV=1 CANONICAL=A0A9J7K1L2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K035-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K035/entry", "sequence": { "sequence": "MAVEALHCGLNPRGIDHPAHAEGIKLQIEGEGIESQSIKNKNFQKVPDQKGTPKRLQGEAETAKSATVKLSKPVALWTQQDVCKWLKKHCPNQYQIYRRALLRLTDKKLERLGIAQENQRQHILQQVLQLKVREEVRNLQLLTQEAVNKPVPRTTLTTLMMAAHKLRASVEGSP", "length": 174, "header": "tr|A0A9J7K035-1|A0A9J7K035_CRIGR Computationally mapped isoform of Sterile alpha motif domain-containing protein 12 isoform X3 OS=Cricetulus griseus OX=10029 GN=Samd12 PE=4 SV=1 CANONICAL=A0A9J7K1L2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K1L2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1L2/entry", "sequence": { "sequence": "MAVEALHCGLNPRGIDHPAHAEGIKLQIEGEGIESQSIKNKNFQKVPDQKGTPKRLQGEAETAKSATVKLSKPVALWTQQDVCKWLKKHCPNQYQIYSESFKQHDITGRALLRLTDKKLERLGIAQENQRQHILQQVLQLKVREEVRNLQLLTQEAVNKPVPRTTLTTLMMAAHKLRASVEGSP", "length": 184, "header": "tr|A0A9J7K1L2-1|A0A9J7K1L2_CRIGR Isoform 1 of Sterile alpha motif domain-containing protein 12 isoform X2 OS=Cricetulus griseus OX=10029 GN=Samd12 PE=4 SV=1 CANONICAL=A0A9J7K1L2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M8B2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M8B2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100753622", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753622", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cell surface receptor protein tyrosine kinase signaling pathway", "id": "GO:0007169", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007169", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K1L2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1L2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasmic side of plasma membrane", "id": "GO:0009898", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009898", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K1L2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1L2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7K1L2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1L2" }, { "id": "PS50105", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50105" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SAM", "eco_id": "ECO_0000259", "start_pos": 77, "end_pos": 143, "start_aa": "Trp", "end_aa": "Arg", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], 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"https://www.ncbi.nlm.nih.gov/protein/XP_035304373" } ] } ], "protein_names": [ { "name": "Apoptosis facilitator Bcl-2-like protein 14 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7K115", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K115/entry#names_and_taxonomy" } ] }, { "name": "apoptosis facilitator Bcl-2-like protein 14 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_035304373", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304373" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048601.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035304373", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304373" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K115", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K115" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Bcl2l14", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K115", "locus": {} } ], "crossref": [ { "id": "A0A9J7K115", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K115", "database": "AlphaFoldDB", "categories": [] }, { "id": "100774179", "url": "https://www.ncbi.nlm.nih.gov/gene/100774179", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002475", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002475", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036834", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036834", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100774179", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774179", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AMCTTSA", "url": "https://omabrowser.org/oma/group/AMCTTSA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7K115", "url": "https://www.orthodb.org/?gene=A0A9J7K115", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14965", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14965", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14965:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14965:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_035304373", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304373", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M9H3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M9H3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M9H3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M9H3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K115", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K115", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K115-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K115-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCSTSMHDLEDIPLEDDDSNSLEFKILTFYARHHVFKNPPAVFSPKLSRTRSLSQKALGTWSTDSWTQVSLPCKSSLSSEKHISLSKKKSSWRTFFRATEEESPPSSPKEIQAQGIQGPFAVERQCLKLQGGFHNQHWARSLSSVEQRLQCEAVDPKVASIANRVAEIVYSWPPAEDSHIQGSSFKLKESAPERLYLHFQGPQPVSCDSKKADGEDQVISRIVELLKYSGDHLGREMKKDKALMSSFQDGLSYSAFKTIADLFLRDIDTRGESEIRAHGFKAALAIDAIAKLTAIDNHPMNRMLGFGTKYLKEYFSPWVQQNGGWEKILGISHEEVD", "length": 337, "header": "tr|A0A9J7K115-1|A0A9J7K115_CRIGR Isoform 1 of Apoptosis facilitator Bcl-2-like protein 14 isoform X1 OS=Cricetulus griseus OX=10029 GN=Bcl2l14 PE=3 SV=1 CANONICAL=A0A9J7K115-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M9H3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M9H3/entry", "sequence": { "sequence": "MCSTSMHDLEDIPLEDDDSNSLEFKILTFYARHHVFKNPPAVFSPKLSRTRSLSQKALGTWSTDSWTQVSLPCKSSLSSEKHISLSKKKSSWRTFFRATEEESPPSSPKEIQAQGIQGPFAVERQCLKLQGGFHNQHWARSLSSVEQRLQCEAVDPKVASIANRVAEIVYSWPPAEDSHIQGSSFKLKESAPERLYLHFQGPQPVSCDSKKDGEDQVISRIVELLKYSGDHLGREMKKDKALMSSFQDGLSYSAFKTIADLFLRDIDTRGESEIRAHGFKAALAIDAIAKLTAIDNHPMNRMLGFGTKYLKEYFSPWVQQNGGWEKILGISHEEVD", "length": 336, "header": "tr|A0A8C2M9H3-1|A0A9J7K115_CRIGR Computationally mapped isoform of Apoptosis facilitator Bcl-2-like protein 14 isoform X1 OS=Cricetulus griseus OX=10029 GN=Bcl2l14 PE=3 SV=1 CANONICAL=A0A9J7K115-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K115-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K115/entry", "sequence": { "sequence": "MCSTSMHDLEDIPLEDDDSNSLEFKILTFYARHHVFKNPPAVFSPKLSRTRSLSQKALGTWSTDSWTQVSLPCKSSLSSEKHISLSKKKSSWRTFFRATEEESPPSSPKEIQAQGIQGPFAVERQCLKLQGGFHNQHWARSLSSVEQRLQCEAVDPKVASIANRVAEIVYSWPPAEDSHIQGSSFKLKESAPERLYLHFQGPQPVSCDSKKADGEDQVISRIVELLKYSGDHLGREMKKDKALMSSFQDGLSYSAFKTIADLFLRDIDTRGESEIRAHGFKAALAIDAIAKLTAIDNHPMNRMLGFGTKYLKEYFSPWVQQNGGWEKILGISHEEVD", "length": 337, "header": "tr|A0A9J7K115-1|A0A9J7K115_CRIGR Isoform 1 of Apoptosis facilitator Bcl-2-like protein 14 isoform X1 OS=Cricetulus griseus OX=10029 GN=Bcl2l14 PE=3 SV=1 CANONICAL=A0A9J7K115-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M9H3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M9H3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M9H3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M9H3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100774179", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774179", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1SQ67-1", "protein_name": "BCL2 like 14", "gene_name": "BCL2L14", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MCTTSTCDLEEIPLDDDDSNSMEFKILEFYVTHHVFKNSSAVFSPKLLRTRSLSQKGPGSWPVKEAWTQGPWPCRSSQSSEKAINLAKKKSSWRTLFGVAEKEENSQSVPTGFRFEGPRRVETQSGSHSQQWPRSLSNVEQRLDHEAVDPKVVSIANRVAEIVYSWPPLEELQHQGGRFTPKRNREKPCVQLQGSQARAPSAKKDGEDQIIARIVELLKYSGDQLERELKKDSILMTSFQDGLSYSVFKTITDQFLRGVDTRGESEVKAQSFKAALAIDAMAKLTTIDNHPMNRVLGFGTKYLKENFSPWVQQHGGWEKVLGTSHEEVD", "length": 329 }, "evidence": [ { "id": "A0A9J7K115", "url": "https://omabrowser.org/oma/group/A0A9J7K115/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q6AYK4-1", "protein_name": "Apoptosis facilitator Bcl-2-like protein 14", "gene_name": "Bcl2l14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MCSTSVYDLEDIPLEDDDPNSIEFKILAFYARHHVFKSTPAVFSPKLSRTRSLSQKALGTWSTDSWTQISLPCRDSLSSEKHISLGKKKSSWRTLFRVTEKEEEPPSSPKEIHAQGPFPVERQGRNQHWSRSLSSVEQCLESEAVDSKVACIANRVAEIVYSWPPPDDSQSQGGGKFKESVPKILHFELQGPQLRPCDSKKDGEDQIINRIVELLKYSGDQLGREIKRDKALVSIFQEGLSYSVFRTITDLFLRDVDTRGESEIKAQGFKAALAIDAIAKLTAIDNHPMNRMLGFGTKYLREYFSPWVQQNGGWEKILGLSHEEVD", "length": 326 }, "evidence": [ { "id": "A0A9J7K115", "url": "https://omabrowser.org/oma/group/A0A9J7K115/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9BZR8-1", "protein_name": "Apoptosis facilitator Bcl-2-like protein 14", "gene_name": "BCL2L14", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MCSTSGCDLEEIPLDDDDLNTIEFKILAYYTRHHVFKSTPALFSPKLLRTRSLSQRGLGNCSANESWTEVSWPCRNSQSSEKAINLGKKKSSWKAFFGVVEKEDSQSTPAKVSAQGQRTLEYQDSHSQQWSRCLSNVEQCLEHEAVDPKVISIANRVAEIVYSWPPPQATQAGGFKSKEIFVTEGLSFQLQGHVPVASSSKKDEEEQILAKIVELLKYSGDQLERKLKKDKALMGHFQDGLSYSVFKTITDQVLMGVDPRGESEVKAQGFKAALVIDVTAKLTAIDNHPMNRVLGFGTKYLKENFSPWIQQHGGWEKILGISHEEVD", "length": 327 }, "evidence": [ { "id": "A0A9J7K115", "url": "https://omabrowser.org/oma/group/A0A9J7K115/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9CPT0-1", "protein_name": "Apoptosis facilitator Bcl-2-like protein 14", "gene_name": "Bcl2l14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035304156", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304156" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K0W6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0W6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100763454", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0W6", "locus": {} } ], "crossref": [ { "id": "A0A9J7K0W6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K0W6", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd03590", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03590", "database": "CDD", "categories": [ "Protein 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027286369", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286369" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K149", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K149" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC103161811", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K149", "locus": {} } ], "crossref": [ { "id": "A0A9J7K149", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K149", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15530", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15530", "database": "CDD", "categories": [ "Protein 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"InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025750", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025750", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:103161811", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103161811", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K149", "url": "https://www.orthodb.org/?gene=A0A9J7K149", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45888", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45888", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45888:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45888:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00628", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00628", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14051", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14051", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027286369", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286369", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N1B4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N1B4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N1B4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N1B4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N1R1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N1R1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N1R1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N1R1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GGQ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGQ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GGQ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGQ7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GI17", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI17", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GI17-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI17-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GJX0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJX0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GJX0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJX0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GLH9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GLH9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GLH9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GLH9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H4D0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4D0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H4D0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4D0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H5B2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5B2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H5B2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5B2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JZK9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZK9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JZK9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZK9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K149", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K149", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K149-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K149-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K1A7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1A7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K1A7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1A7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGGLSARPTAGRTDPAGTCWGQDPGSKMATVIPGPLRCLGEDFYREAIEHCRSYNARLCAERSLRLPFLDSQTGVAQNNCYIWMEKTHRGPGLAPGQIYTYPARCWRKKRRLNILEDPRLRPCEYKIDCEVPLKKEGGLPEGPVLEALLCAETGEKKVELKEEETIMDCQKQQLLEFPHDLEVEDLEEDIPRRKNRAKGKAYGIGGLRKRQDTASLEDRDKPYVCDICGKRYKNRPGLSYHYTHTHLAEEEGEEHTERHALPFHRKNNHKQFYKELAWVPEAQRKHTAKKAPDGTVIPNGYCDFCLGGSKKTGCPEDLISCADCGRSGHPSCLQFTVNMTAAVRTYRWQCIECKSCSLCGTSENDGASWAGLTPQDQLLFCDDCDRGYHMYCLNPPMAEPPEGSWSCHLCLRHLKEKASAYITLT", "length": 425, "header": "tr|A0A9J7K149-1|A0A9J7K149_CRIGR Isoform 1 of Zinc finger protein neuro-d4 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC103161811 PE=3 SV=1 CANONICAL=A0A9J7K149-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N1B4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N1B4/entry", "sequence": { "sequence": "MATAIQNPLKSLGEDFYREAIEHCRSYNARLCAERSLRLPFLDSQTGVAQNNCYIWMEKTHRGPGLAPGQIYTYPARCWRKKRRLNILEDPRLRPCEYKIDCEVPLKKEGGLPEGPVLEALLCAETGEKKVELKEEETIMDCQKQQLLEFPHDLEVEDLEEDIPRRKNRAKGKAYGIGGLRKRQDTASLEDRDKPYVCDICGKRYKNRPGLSYHYTHTHLAEEEGEEHTERHALPFHRKNNHKQFYKELAWVPEAQRKHTAKKAPDGTVIPNGYCDFCLGGSKKTGCPEDLISCADCGRSGHPSCLQFTVNMTAAVRTYRWQCIECKSCSLCGTSENDGASWAGLTPQDQLLFCDDCDRGYHMYCLNPPMAEPPEGSWSCHLCLRHLKEKASAYITLT", "length": 398, "header": "tr|A0A8C2N1B4-1|A0A9J7K149_CRIGR Computationally mapped isoform of Zinc finger protein neuro-d4 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC103161811 PE=3 SV=1 CANONICAL=A0A9J7K149-1" }, "locus": {} }, { "isoform_ac": "A0A8C2N1R1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N1R1/entry", "sequence": { "sequence": "MGGLSARPTAGRTDPAGTCWGQDPGSKMATVIPGPLSLGEDFYREAIEHCRSYNARLCAERSLRLPFLDSQTGVAQNNCYIWMEKTHRGPGLAPGQIYTYPARCWRKKRRLNILEDPRLRPCEYKIDCEVPLKKEGGLPEGPVLEALLCAETGEKKVELKEEETIMDCQKQQLLEFPHDLEVEDLEEDIPRRKNRAKGKAYGIGGLRKRQDTASLEDRDKPYVCDICGKRYKNRPGLSYHYTHTHLAEEEGEEHTERHALPFHRKNNHKQFYKELAWVPEAQRKHTAKKAPDGTVIPNGYCDFCLGGSKKTGCPEDLISCADCGRSGHPSCLQFTVNMTAAVRTYRWQCIECKSCSLCGTSENDDQLLFCDDCDRGYHMYCLNPPMAEPPEGSWSCHLCLRHLKEKASAYITLT", "length": 414, "header": "tr|A0A8C2N1R1-1|A0A8C2N1R1_CRIGR Computationally mapped isoform of Zinc finger protein neuro-d4 isoform X4 OS=Cricetulus griseus OX=10029 GN=LOC103161811 PE=3 SV=1 CANONICAL=A0A9J7K149-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GGQ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGQ7/entry", "sequence": { "sequence": "MGGLSARPTAGRTDPAGTCWGQDPGSKMATVIPGPLRCLGEDFYREAIEHCRSYNARLCAERSLRLPFLDSQTGVAQNNCYIWMEKTHRGPGLAPGQIYTYPARCWRKKRRLNILEDPRLRPCEYKIDCEVPLKKEGGLPEGPVLEALLCAETGEKKVELKEEETIMDCQKQQLLEFPHDLEVEDLEEDIPRRKNRAKGKAYGIGGLRKRQDTASLEDRDKPYVCDICGKRYKNRPGLSYHYTHTHLAEEEGEEHTERHALPFHRKNNHKQFYKELAWVPEAQRKHTAKKAPDGTVIPNGYCDFCLGGSKKTGCPEDLISCADCGRSGHPSCLQFTVNMTAAVRTYRWQCIECKSCSLCGTSENDLLFCDDCDRGYHMYCLNPPMAEPPEGSWSCHLCLRHLKEKASAYITLT", "length": 413, "header": "tr|A0A9J7GGQ7-1|A0A9J7K149_CRIGR Computationally mapped isoform of Zinc finger protein neuro-d4 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC103161811 PE=3 SV=1 CANONICAL=A0A9J7K149-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GI17-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI17/entry", "sequence": { "sequence": "MGGLSARPTAGRTDPAGTCWGQDPGSKMATVIPGPLRCLGEDFYREAIEHCRSYNARLCAERSLRLPFLDSQTGVAQNNCYIWMEKTHRGPGLAPGQIYTYPARCWRKKRRLNILEDPRLRPCEYKIDCEVPLKKEGGLPEGPVLEALLCAETGEKKVELKEEETIMDCQKQQLLEFPHDLEVEDLEEDIPRRKNRAKGKAYGIGGLRKRQDTASLEDRDKPYVCDICGKRYKNRPGLSYHYTHTHLAEEEGEEHTERHALPFHRKNNHKQFYKELAWVPEAQRKHTAKKAPDGTVIPNGYCDFCLGGSKKTGCPEDLISCADCGRSGHPSCLQFTVNMTAAVRTYRWQCIECKSCSLCGTSENDDQLLFCDDCDRGYHMYCLNPPMAEPPEGSWSCHLCLRHLKEKASAYITLT", "length": 415, "header": "tr|A0A9J7GI17-1|A0A9J7K149_CRIGR Computationally mapped isoform of Zinc finger protein neuro-d4 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC103161811 PE=3 SV=1 CANONICAL=A0A9J7K149-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GJX0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJX0/entry", "sequence": { "sequence": "MEKTHRGPGLAPGQIYTYPARCWRKKRRLNILEDPRLRPCEYKIDCEVPLKKEGGLPEGPVLEALLCAETGEKKVELKEEETIMDCQKQQLLEFPHDLEVEDLEEDIPRRKNRAKGKAYGIGGLRKRQDTASLEDRDKPYVCDICGKRYKNRPGLSYHYTHTHLAEEEGEEHTERHALPFHRKNNHKQFYKELAWVPEAQRKHTAKKAPDGTVIPNGYCDFCLGGSKKTGCPEDLISCADCGRSGHPSCLQFTVNMTAAVRTYRWQCIECKSCSLCGTSENDGASWAGLTPQDQLLFCDDCDRGYHMYCLNPPMAEPPEGSWSCHLCLRHLKEKASAYITLT", "length": 342, "header": "tr|A0A9J7GJX0-1|A0A9J7K149_CRIGR Computationally mapped isoform of Zinc finger protein neuro-d4 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC103161811 PE=3 SV=1 CANONICAL=A0A9J7K149-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GLH9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GLH9/entry", "sequence": { "sequence": "MGGLSARPTAGRTDPAGTCWGQDPGSKMATVIPGPLRCLGEDFYREAIEHCRSYNARLCAERSLRLPFLDSQTGVAQNNCYIWMEKTHRGPGLAPGQIYTYPARCWRKKRRLNILEDPRLRPCEYKIDCEVPLKKEGGLPEGPVLEALLCAETGEKKVELKEEETIMDCQKQQLLEFPHDLEVEDLEEDIPRRKNRAKGKAYGIGGLRKRQDTASLEDRDKPYVCDICGKRYKNRPGLSYHYTHTHLAEEEGEEHTERHALPFHRKNNHKPKKAPDGTVIPNGYCDFCLGGSKKTGCPEDLISCADCGRSGHPSCLQFTVNMTAAVRTYRWQCIECKSCSLCGTSENDGASWAGLTPQDQLLFCDDCDRGYHMYCLNPPMAEPPEGSWSCHLCLRHLKEKASAYITLT", "length": 408, "header": "tr|A0A9J7GLH9-1|A0A9J7GLH9_CRIGR Computationally mapped isoform of Zinc finger protein neuro-d4 isoform X6 OS=Cricetulus griseus OX=10029 GN=LOC103161811 PE=3 SV=1 CANONICAL=A0A9J7K149-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H4D0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4D0/entry", "sequence": { "sequence": "MATAIQNPLKSLGEDFYREAIEHCRSYNARLCAERSLRLPFLDSQTGVAQNNCYIWMEKTHRGPGLAPGQIYTYPARCWRKKRRLNILEDPRLRPCEYKIDCEVPLKKEGGLPEGPVLEALLCAETGEKKVELKEEETIMDCQKQQLLEFPHDLEVEDLEEDIPRRKNRAKGKAYGIGGLRKRQDTASLEDRDKPYVCDICGKRYKNRPGLSYHYTHTHLAEEEGEEHTERHALPFHRKNNHKPKKAPDGTVIPNGYCDFCLGGSKKTGCPEDLISCADCGRSGHPSCLQFTVNMTAAVRTYRWQCIECKSCSLCGTSENDDQLLFCDDCDRGYHMYCLNPPMAEPPEGSWSCHLCLRHLKEKASAYITLT", "length": 371, "header": "tr|A0A9J7H4D0-1|A0A9J7H4D0_CRIGR Computationally mapped isoform of Zinc finger protein neuro-d4 isoform X11 OS=Cricetulus griseus OX=10029 GN=LOC103161811 PE=3 SV=1 CANONICAL=A0A9J7K149-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H5B2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5B2/entry", "sequence": { "sequence": "MATAIQNPLKSLGEDFYREAIEHCRSYNARLCAERSLRLPFLDSQTGVAQNNCYIWMEKTHRGPGLAPGQIYTYPARCWRKKRRLNILEDPRLRPCEYKIDCEVPLKKEGGLPEGPVLEALLCAETGEKKVELKEEETIMDCQKQQLLEFPHDLEVEDLEEDIPRRKNRAKGKAYGIGGLRKRQDTASLEDRDKPYVCDICGKRYKNRPGLSYHYTHTHLAEEEGEEHTERHALPFHRKNNHKQFYKELAWVPEAQRKHTAKKAPDGTVIPNGYCDFCLGGSKKTGCPEDLISCADCGRSGHPSCLQFTVNMTAAVRTYRWQCIECKSCSLCGTSENDDQLLFCDDCDRGYHMYCLNPPMAEPPEGSWSCHLCLRHLKEKASAYITLT", "length": 388, "header": "tr|A0A9J7H5B2-1|A0A9J7H5B2_CRIGR Computationally mapped isoform of Zinc finger protein neuro-d4 isoform X9 OS=Cricetulus griseus OX=10029 GN=LOC103161811 PE=3 SV=1 CANONICAL=A0A9J7K149-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JZK9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZK9/entry", "sequence": { "sequence": "MGGLSARPTAGRTDPAGTCWGQDPGSKMATVIPGPLSLGEDFYREAIEHCRSYNARLCAERSLRLPFLDSQTGVAQNNCYIWMEKTHRGPGLAPGQIYTYPARCWRKKRRLNILEDPRLRPCEYKIDCEVPLKKEGGLPEGPVLEALLCAETGEKKVELKEEETIMDCQKQQLLEFPHDLEVEDLEEDIPRRKNRAKGKAYGIGGLRKRQDTASLEDRDKPYVCDICGKRYKNRPGLSYHYTHTHLAEEEGEEHTERHALPFHRKNNHKQFYKELAWVPEAQRKHTAKKAPDGTVIPNGYCDFCLGGSKKTGCPEDLISCADCGRSGHPSCLQFTVNMTAAVRTYRWQCIECKSCSLCGTSENDGASWAGLTPQDQLLFCDDCDRGYHMYCLNPPMAEPPEGSWSCHLCLRHLKEKASAYITLT", "length": 424, "header": "tr|A0A9J7JZK9-1|A0A9J7JZK9_CRIGR Computationally mapped isoform of Zinc finger protein neuro-d4 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC103161811 PE=3 SV=1 CANONICAL=A0A9J7K149-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K149-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K149/entry", "sequence": { "sequence": "MGGLSARPTAGRTDPAGTCWGQDPGSKMATVIPGPLRCLGEDFYREAIEHCRSYNARLCAERSLRLPFLDSQTGVAQNNCYIWMEKTHRGPGLAPGQIYTYPARCWRKKRRLNILEDPRLRPCEYKIDCEVPLKKEGGLPEGPVLEALLCAETGEKKVELKEEETIMDCQKQQLLEFPHDLEVEDLEEDIPRRKNRAKGKAYGIGGLRKRQDTASLEDRDKPYVCDICGKRYKNRPGLSYHYTHTHLAEEEGEEHTERHALPFHRKNNHKQFYKELAWVPEAQRKHTAKKAPDGTVIPNGYCDFCLGGSKKTGCPEDLISCADCGRSGHPSCLQFTVNMTAAVRTYRWQCIECKSCSLCGTSENDGASWAGLTPQDQLLFCDDCDRGYHMYCLNPPMAEPPEGSWSCHLCLRHLKEKASAYITLT", "length": 425, "header": "tr|A0A9J7K149-1|A0A9J7K149_CRIGR Isoform 1 of Zinc finger protein neuro-d4 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC103161811 PE=3 SV=1 CANONICAL=A0A9J7K149-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K1A7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1A7/entry", "sequence": { "sequence": "MGGLSARPTAGRTDPAGTCWGQDPGSKMATVIPGPLRCLGEDFYREAIEHCRSYNARLCAERSLRLPFLDSQTGVAQNNCYIWMEKTHRGPGLAPGQIYTYPARCWRKKRRLNILEDPRLRPCEYKIDCEVPLKKEGGLPEGPVLEALLCAETGEKKVELKEEETIMDCQKQQLLEFPHDLEVEDLEEDIPRRKNRAKGKAYGIGGLRKRQDTASLEDRDKPYVCDICGKRYKNRPGLSYHYTHTHLAEEEGEEHTERHALPFHRKNNHKPKKAPDGTVIPNGYCDFCLGGSKKTGCPEDLISCADCGRSGHPSCLQFTVNMTAAVRTYRWQCIECKSCSLCGTSENDDQLLFCDDCDRGYHMYCLNPPMAEPPEGSWSCHLCLRHLKEKASAYITLT", "length": 398, "header": "tr|A0A9J7K1A7-1|A0A9J7K1A7_CRIGR Computationally mapped isoform of Zinc finger protein neuro-d4 isoform X8 OS=Cricetulus griseus OX=10029 GN=LOC103161811 PE=3 SV=1 CANONICAL=A0A9J7K149-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N1B4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N1B4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N1B4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N1B4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:103161811", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103161811", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K149", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K149" } ], "pmid": "" }, { "name": "nBAF complex", "id": "GO:0071565", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071565", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K149", "url": 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"https://www.ncbi.nlm.nih.gov/protein/XP_027288322" }, "gene_names": [ { "name": "Gab3", "type": "recommended", "evidence": [ { "id": "A0A9J7JZ32", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZ32" } ] }, { "name": "Gab3", "type": "synonym", "evidence": [ { "id": "XP_027288322", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288322" } ] } ], "protein_names": [ { "name": "GRB2-associated-binding protein 3 isoform X4", "type": "synonym", "evidence": [ { "id": "XP_027288322", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288322" }, { "id": "A0A9J7JZ32", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZ32/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027288322", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288322" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JZ32", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZ32" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Gab3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZ32", "locus": {} } ], "crossref": [ { "id": "A0A9J7JZ32", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JZ32", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd13385", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13385", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100757434", "url": "https://www.ncbi.nlm.nih.gov/gene/100757434", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046355", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046355", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100757434", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757434", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JZ32", "url": "https://www.orthodb.org/?gene=A0A9J7JZ32", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45960", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45960", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45960:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45960:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00169", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00169", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027288322", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288322", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N5A4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N5A4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N5A4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N5A4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GKQ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKQ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GKQ5-1", "url": 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"MSMGDAVCTGWLVKSPPERKLQRYAWRKRWFVLRRGRMSGNPDVLEYYRNKHSSKPIRVIDLSECTVWKHAGPGFVRKEFQNNFVFIVKTTSRTFYLVAKTEEEMQVWVHSISQVCNLSHLEDGAADSVESLSHMPSSLQPSPASSFHTAHVANSALPKDGPNSNTVATEETRSESEFLFLPDYLILSNCETGRLHHASLPNRCDSWSNSDRSLEQTSFDDVFLDGMRPFTANNLVHPLHHGNGLQDVPSTRPQAALIWTREINVPSRNHMPSSPFLESSLSPTIHVGKKQVSLPNEAKDLNIVSNTPPPRPPKPSYLSERRQEDQLLLTGYNSSKKPGYTMVPRRISLSGLDHVGSWKGDVQSQSLRNREKRLSLNLPCKFSPMYPTASLSAEDSSYVPMSPKGTTSLRPYYCQDDYIPMSSSMLPELPADLEPPPVNRDLKPQRKSRPPPLDLRNLSTIGEHTSLTRTHTVPCNRTSFLSPQRNGINSARFFATPSSEEESYIQMEEYRTDNSMSSSAVTWTKKFSLDYLALDFNSASPAPVQQKLLSEEQRVDYVQVDEQKTQALQSTKQEWTDERQSKVAGWGIGGLQPASWESRKPRTGEELSFP", "length": 610, "header": "tr|A0A9J7JZ32-1|A0A9J7JZ32_CRIGR Isoform 1 of GRB2-associated-binding protein 3 isoform X4 OS=Cricetulus griseus OX=10029 GN=Gab3 PE=3 SV=1 CANONICAL=A0A9J7JZ32-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N5A4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N5A4/entry", "sequence": { "sequence": "MSMGDAVCTGWLVKSPPERKLQRYAWRKRWFVLRRGRMSGNPDVLEYYRNKHSSKPIRVIDLSECTVWKHAGPGFVRKEFQNNFVFIVKTTSRTFYLVAKTEEEMQVWVHSISQVCNLSHLEDGAADSVESLSHMPSSLQPSPASSFHTAHVANSALPKDGPNSNTVATEETRSESEFLFLPDYLILSNCETGRLHHASLPNRCDSWSNSDRSLEQTSFDDVFLDGMRPFTANNLVHPLHHGNGLQDVPSTRPQAALIWTREINVPSRNHMPSSPFLESSLSPTIHVGKKQVSLPNEAKDLNIVSNTPPPRPPKPSYLSERRQEDQLLLTGYNSSKKPGYTMVPRRISLSGLDHVGSWKGDVQSQSLRNREKRLSLNLPCKFSPMYPTASLSAEDSSYVPMSPKGTTSLRPYYCQDDYIPMSSSMLPELPADLEPPPVNRDLKPQRKSRPPPLDLRNLSTIGEHTSLTRTHTVPCNRTSFLSPQRNGINSARFFATPSSEEESYIQMEEYRTDNSMSSSAVTWTKKFSLDYLALDFNSASPAPVQQKLLSEEQRVDYVQVDEQKTQALQSTKQEWTDERQSKV", "length": 583, "header": "tr|A0A8C2N5A4-1|A0A9J7JZ32_CRIGR Computationally mapped isoform of GRB2-associated-binding protein 3 isoform X4 OS=Cricetulus griseus OX=10029 GN=Gab3 PE=3 SV=1 CANONICAL=A0A9J7JZ32-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GKQ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKQ5/entry", "sequence": { "sequence": "MSMGDAVCTGWLVKSPPERKLQRYAWRKRWFVLRRGRMSGNPDVLEYYRNKHSSKPIRVIDLSECTVWKHAGPGFVRKEFQNNFVFIVKTTSRTFYLVAKTEEEMQVWVHSISQVCNLSHLEDGADSVESLSHMPSSLQPSPASSFHTAHVANSALPKDGPNSNTVATEETRSESEFLFLPDYLILSNCETGRLHHASLPNRCDSWSNSDRSLEQTSFDDVFLDGMRPFTANNLVHPLHHGNGLQDVPSTRPQAALIWTREINVPSRNHMPSSPFLESSLSPTIHVGKKQVSLPNEAKDLNIVSNTPPPRPPKPSYLSERRQEDQLLLTGYNSSKKPGYTMVPRRISLSGLDHVGSWKGDVQSQSLRNREKRLSLNLPCKFSPMYPTASLSAEDSSYVPMSPKGTTSLRPYYCQDDYIPMSSSMLPELPADLEPPPVNRDLKPQRKSRPPPLDLRNLSTIGEHTSLTRTHTVPCNRTSFLSPQRNGINSARFFATPSSEEESYIQMEEYRTDNSMSSSAVTWTKKFSLDYLALDFNSASPAPVQQKLLSEEQRVDYVQVDEQKTQALQSTKQEWTDERQSKVAGWGIGGLQPASWESRKPRTGEELSFP", "length": 609, "header": "tr|A0A9J7GKQ5-1|A0A9J7GKQ5_CRIGR Computationally mapped isoform of GRB2-associated-binding protein 3 isoform X5 OS=Cricetulus griseus OX=10029 GN=Gab3 PE=3 SV=1 CANONICAL=A0A9J7JZ32-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JZ32-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZ32/entry", "sequence": { "sequence": "MSMGDAVCTGWLVKSPPERKLQRYAWRKRWFVLRRGRMSGNPDVLEYYRNKHSSKPIRVIDLSECTVWKHAGPGFVRKEFQNNFVFIVKTTSRTFYLVAKTEEEMQVWVHSISQVCNLSHLEDGAADSVESLSHMPSSLQPSPASSFHTAHVANSALPKDGPNSNTVATEETRSESEFLFLPDYLILSNCETGRLHHASLPNRCDSWSNSDRSLEQTSFDDVFLDGMRPFTANNLVHPLHHGNGLQDVPSTRPQAALIWTREINVPSRNHMPSSPFLESSLSPTIHVGKKQVSLPNEAKDLNIVSNTPPPRPPKPSYLSERRQEDQLLLTGYNSSKKPGYTMVPRRISLSGLDHVGSWKGDVQSQSLRNREKRLSLNLPCKFSPMYPTASLSAEDSSYVPMSPKGTTSLRPYYCQDDYIPMSSSMLPELPADLEPPPVNRDLKPQRKSRPPPLDLRNLSTIGEHTSLTRTHTVPCNRTSFLSPQRNGINSARFFATPSSEEESYIQMEEYRTDNSMSSSAVTWTKKFSLDYLALDFNSASPAPVQQKLLSEEQRVDYVQVDEQKTQALQSTKQEWTDERQSKVAGWGIGGLQPASWESRKPRTGEELSFP", "length": 610, "header": "tr|A0A9J7JZ32-1|A0A9J7JZ32_CRIGR Isoform 1 of GRB2-associated-binding protein 3 isoform X4 OS=Cricetulus griseus OX=10029 GN=Gab3 PE=3 SV=1 CANONICAL=A0A9J7JZ32-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KDJ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDJ9/entry", "sequence": { "sequence": "MSMGDAVCTGWLVKSPPERKLQRYAWRKRWFVLRRGRMSGNPDVLEYYRNKHSSKPIRVIDLSECTVWKHAGPGFVRKEFQNNFVFIVKTTSRTFYLVAKTEEEMQVWVHSISQVCNLSHLEDGADSVESLSHMPSSLQPSPASSFHTAHVANSALPKDGPNSNTVATEETRSESEFLFLPDYLILSNCETGRLHHASLPNRCDSWSNSDRSLEQTSFDDVFLDGMRPFTANNLVHPLHHGNGLQDVPSTRPQAALIWTREINVPSRNHMPSSPFLESSLSPTIHVGKKQVSLPNEAKDLNIVSNTPPPRPPKPSYLSERRQEDQLLLTGYNSSKKPGYTMVPRRISLSGLDHVGSWKGDVQSQSLRNREKRLSLNLPCKFSPMYPTASLSAEDSSYVPMSPKGTTSLRPYYCQDDYIPMSSSMLPELPADLEPPPVNRDLKPQRKSRPPPLDLRNLSTIGEHTSLTRTHTVPCNRTSFLSPQRNGINSARFFATPSSEEESYIQMEEYRTDNSMSSSAVTWTKKFSLDYLALDFNSASPAPVQQKLLSEEQRVDYVQVDEQKTQALQSTKQEWTDERQSKV", "length": 582, "header": "tr|A0A9J7KDJ9-1|A0A9J7KDJ9_CRIGR Computationally mapped isoform of GRB2-associated-binding protein 3 isoform X7 OS=Cricetulus griseus OX=10029 GN=Gab3 PE=3 SV=1 CANONICAL=A0A9J7JZ32-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N5A4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N5A4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N5A4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N5A4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100757434", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757434", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JZ32", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZ32" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JZ32", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZ32" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "signaling adaptor activity", "id": "GO:0035591", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035591", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JZ32", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZ32" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 117, "end_pos": 119, "annotation": "n_glycosylation_sequon" }, { "start_pos": 333, "end_pos": 335, "annotation": "n_glycosylation_sequon" }, { "start_pos": 457, "end_pos": 459, "annotation": "n_glycosylation_sequon" }, { "start_pos": 476, "end_pos": 478, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { 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"database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GHF6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHF6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JXG9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXG9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JXG9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXG9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAVTLPEVVEELLSEMAAAVRDGARSTARGLLNSTPHVPDEHLSSLKFVFGSSAIQALDLVDRESVTLISSPSGRRVYQVLGSSGKTYTCMTSCHYCSCPAFAFSVLRKSDSLLCKHLLAIYLSQVMRNCQQLSVSDKQLTDLLLMEKTQEA", "length": 152, "header": "tr|A0A9J7JXG9-1|A0A9J7JXG9_CRIGR Isoform 1 of Zinc finger SWIM domain-containing protein 7 isoform X2 OS=Cricetulus griseus OX=10029 GN=Zswim7 PE=4 SV=1 CANONICAL=A0A9J7JXG9-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QJN9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJN9/entry", "sequence": { "sequence": "MAVTLPEVVEELLSEMAAAVRDGARIPDEHLSSLKFVFGSSAIQALDLVDRESVTLISSPSGRRVYQVLGSSGKTYTCMTSCHYCSCPAFAFSVLRKSDSLLCKHLLAIYLSQVMRNCQQLSVSDKQLTDLLLMEKTQEA", "length": 140, "header": "tr|A0A8C2QJN9-1|A0A9J7JXG9_CRIGR Computationally mapped isoform of Zinc finger SWIM domain-containing protein 7 isoform X2 OS=Cricetulus griseus OX=10029 GN=Zswim7 PE=4 SV=1 CANONICAL=A0A9J7JXG9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GCT9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCT9/entry", "sequence": { "sequence": "MNHLSSSWFCFLLPPYGALNALDRVPDEHLSSLKFVFGSSAIQALDLVDRESVTLISSPSGRRVYQVLGSSGKTYTCMTSCHYCSCPAFAFSVLRKSDSLLCKHLLAIYLSQVMRNCQQLSVSDKQLTDLLLMEKTQEA", "length": 139, "header": "tr|A0A9J7GCT9-1|A0A9J7JXG9_CRIGR Computationally mapped isoform of Zinc finger SWIM domain-containing protein 7 isoform X2 OS=Cricetulus griseus OX=10029 GN=Zswim7 PE=4 SV=1 CANONICAL=A0A9J7JXG9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GDW7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDW7/entry", "sequence": { "sequence": "MGVYVRPCTHVREPQRPEVGVGSLELAVQAVPDEHLSSLKFVFGSSAIQALDLVDRESVTLISSPSGRRVYQVLGSSGKTYTCMTSCHYCSCPAFAFSVLRKSDSLLCKHLLAIYLSQVMRNCQQLSVSDKQLTDLLLMEKTQEA", "length": 145, "header": "tr|A0A9J7GDW7-1|A0A9J7JXG9_CRIGR Computationally mapped isoform of Zinc finger SWIM domain-containing protein 7 isoform X2 OS=Cricetulus griseus OX=10029 GN=Zswim7 PE=4 SV=1 CANONICAL=A0A9J7JXG9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GHF6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHF6/entry", "sequence": { "sequence": "MAVTLPEVVEELLSEMAAAVRDGARSTARGLLNSTPHVPDEHLSSLKFVFGSSAIQALDLVDRESVTLISSPSGRRVYQVLGSSGKTYTCMTSCHYCSCPAFAFSVLRKSDSLLVCVLYSSVSISWQFILVRL", "length": 133, "header": "tr|A0A9J7GHF6-1|A0A9J7JXG9_CRIGR Computationally mapped isoform of Zinc finger SWIM domain-containing protein 7 isoform X2 OS=Cricetulus griseus OX=10029 GN=Zswim7 PE=4 SV=1 CANONICAL=A0A9J7JXG9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JXG9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXG9/entry", "sequence": { "sequence": "MAVTLPEVVEELLSEMAAAVRDGARSTARGLLNSTPHVPDEHLSSLKFVFGSSAIQALDLVDRESVTLISSPSGRRVYQVLGSSGKTYTCMTSCHYCSCPAFAFSVLRKSDSLLCKHLLAIYLSQVMRNCQQLSVSDKQLTDLLLMEKTQEA", "length": 152, "header": "tr|A0A9J7JXG9-1|A0A9J7JXG9_CRIGR Isoform 1 of Zinc finger SWIM domain-containing protein 7 isoform X2 OS=Cricetulus griseus OX=10029 GN=Zswim7 PE=4 SV=1 CANONICAL=A0A9J7JXG9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QJN9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJN9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QJN9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJN9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100760249", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760249", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JXG9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXG9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein stabilization", "id": "GO:0050821", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050821", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JXG9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXG9" } ], "pmid": "" }, { "name": "double-strand break repair via homologous recombination", "id": "GO:0000724", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000724", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JXG9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXG9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "Shu complex", "id": "GO:0097196", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097196", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JXG9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXG9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 33, "end_pos": 35, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JXG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXG9" }, { "id": "PS50966", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50966" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SWIM-type", "eco_id": "ECO_0000259", "start_pos": 88, "end_pos": 126, "start_aa": "Tyr", "end_aa": "Val", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 33, "end_pos": 35 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"A0A9J7JZF5", "uniprot_id": "A0A9J7JZF5_CRIGR", "mass": { "chemical_mass": 95504.0, "monoisotopic_mass": 95504.0 }, "refseq": { "ac": "XP_007640702", "name": "centrosomal protein of 95 kDa isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007640702" }, "gene_names": [ { "name": "Cep95", "type": "recommended", "evidence": [ { "id": "A0A9J7JZF5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZF5" } ] }, { "name": "Cep95", "type": "synonym", "evidence": [ { "id": "XP_007640702", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007640702" } ] } ], "protein_names": [ { "name": "Centrosomal protein of 95 kDa isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7JZF5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZF5/entry#names_and_taxonomy" } ] }, { "name": "centrosomal protein of 95 kDa isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007640702", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007640702" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 118 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613864.1) and transcript sequence (IACG01179549.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007640702", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007640702" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JZF5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZF5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cep95", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZF5", "locus": {} } ], "crossref": [ { "id": "A0A9J7JZF5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JZF5", "database": "AlphaFoldDB", "categories": [] }, { "id": "100773998", "url": "https://www.ncbi.nlm.nih.gov/gene/100773998", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026619", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026619", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044039", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044039", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100773998", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773998", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JZF5", "url": "https://www.orthodb.org/?gene=A0A9J7JZF5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22545", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22545", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22545:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22545:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF19016", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19016", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007640702", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007640702", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QKF3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKF3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QKF3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKF3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GDM7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GDM7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDM7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GDM9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDM9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GDM9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDM9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GEQ1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEQ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GEQ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEQ1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GI79", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI79", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GI79-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI79-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JZF5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZF5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JZF5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZF5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASSEAEWVQMANNLLFKCHIHLRIHELEDCDANVFIALYQSILGEKVPDLIVISRSQEDDAHNVQSVIDSLALDYLQVSLSHITGENIVKGDKESIKNLLEIFDGLLEYLTEHISEASHPNSENEKYFKDSYREEPVEELESVKESKSPWKKVSFGRCSFSSDTLGPTWDEDEAESTGEIIRLGDTAHTFSIRSHGAQNSMDMQSSKVLASPGTKPYEEVWNPISLSFPSKNGMTFEAAETPSLSMVTSARKLGEPIRAAIPLHPPYHPSESRAPCPIGKEYLRSSHHYSPAVTSGEHSALYVEPDDKVVLTSMLSKDDEQETCLAPTQSPRTRRLPKGKRNENRAVASSEYRPCPQKARKWLTEEELHAVSEKLNQRLSELDWMLKNALGNRAADRTDGETGDEEVHGGNEEELLSQNSDSIMECGPKKPRPGFFMSRKSPYRSHSLSPSSVNKHRQLEKEHKTQHKSKGPGSRRLQAEALTEAFERELRKNKVQENIGLRGISDEEASAEETEKAYREVIPKGTPKQSQIQRIYSRKTAAPSPKGGSLKSSKAAMMKVNECSLLPLMLEQFPFLYVSDPTLTKMWKQQIAQIEQLKREAQRENRSKKKLQDEIEEALRRHDLLTTLVKKEYEHNKRLQDFKDRIHRQRLTKSKIKENRQQIVRARKYYDDYRVQLCAKMMRMRTREEMIFKKLFEEGLQIQKQRLRDLRNYAKEKRNEEKRQHQNELYSMENYYKDQFSLLAEAISQERQELKAREKSQAQTLHKVKRELRAKMEKEIQQLQYIITQNDDDAFFRELEAERFKARLQLASFQYSKNPFPRGQAS", "length": 827, "header": "tr|A0A9J7JZF5-1|A0A9J7JZF5_CRIGR Isoform 1 of Centrosomal protein of 95 kDa isoform X2 OS=Cricetulus griseus OX=10029 GN=Cep95 PE=4 SV=1 CANONICAL=A0A9J7JZF5-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QKF3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKF3/entry", "sequence": { "sequence": "MASSEAEWVQMANNLLFKCHIHLRIHELEDCDANVFIALYQSILGEKVPDLIVISRSQEDDAHNVQSVIDSLALDYLQVSLSHITGENIVKGDKESIKNLLEIFDGLLEYLTEHISEASHPNSENEKYFKDSYREEPVEELESVKESKSPWKKVSFGRCSFSSDTLGPTWDEDEAESTGEIIRLGDTAHTFSIRSHGAQNSMDMQSSKVLASPGTKPYEEVWNPISLSFPSKNGMTFEAETPSLSMVTSARKLGEPIRAAIPLHPPYHPSESRAPCPIGKEYLRSSHHYSPAVTSGEHSALYVEPDDKVVLTSMLSKDDEQETCLAPTQSPRTRRLPKGKRNENRAVASSEYRPCPQKARKWLTEEELHAVSEKLNQRLSELDWMLKNALGNRAADRTDGETGDEEVHGGNEEELLSQNSDSIMECGPKKPRPGFFMSRKSPYRSHSLSPSSVNKHRQLEKEHKTQHKSKGPGSRRLQAEALTEAFERELRKNKVQENIGLRGISDEEASAEETEKAYREVIPKGTPKQSQIQRIYSRKTAAPSPKGGSLKSSKAAMMKVNECSLLPLMLEQFPFLYVSDPTLTKMWKQQIAQIEQLKREAQRENRSKKKLQDEIEEALRRHDLLTTLVKKEYEHNKRLQDFKDRIHRQRLTKSKIKENRQQIVRARKYYDDYRVQLCAKMMRMRTREEMIFKKLFEEGLQIQKQRLRDLRNYAKEKRNEEKRQHQNELYSMENYYKDQFSLLAEAISQERQELKAREKSQAQTLHKVKRELRAKMEKEIQQLQYIITQNDDDAFFRELEAERFKARLQLASFQYSKNPFPRGQAS", "length": 826, "header": "tr|A0A8C2QKF3-1|A0A9J7JZF5_CRIGR Computationally mapped isoform of Centrosomal protein of 95 kDa isoform X2 OS=Cricetulus griseus OX=10029 GN=Cep95 PE=4 SV=1 CANONICAL=A0A9J7JZF5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GDM7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDM7/entry", "sequence": { "sequence": "MASSEAEWVQMANNLLFKCHIHLRIHELEDCDANVFIALYQSILGEKVPDLIVISRSQEDDAHNVQSVIDSLALDYLQVSLSHITGENIVKGDKESIKNLLEIFDGLLEYLTEHISEASHPNSENEKYFKDSYREEPVEELESVKESKSPWKKVSFGRCSFSSDTLGPTWDEDEAESTGEIIRLGDTAHTFSIRSHGAQNSMDMQSSKVLASPGTKPYEEVWNPISLSFPSKNGMTFEAETPSLSMVTSARKLGKEYLRSSHHYSPAVTSGEHSALYVEPDDKVVLTSMLSKDDEQETCLAPTQSPRTRRLPKGKRNENRAVASSEYRPCPQKARKWLTEEELHAVSEKLNQRLSELDWMLKNALGNRAADRTDGETGDEEVHGGNEEELLSQNSDSIMECGPKKPRPGFFMSRKSPYRSHSLSPSSVNKHRQLEKEHKTQHKSKGPGSRRLQAEALTEAFERELRKNKVQENIGLRGISDEEASAEETEKAYREVIPKGTPKQSQIQRIYSRKTAAPSPKGGSLKSSKAAMMKVNECSLLPLMLEQFPFLYVSDPTLTKMWKQQIAQIEQLKREAQRENRSKKKLQDEIEEALRRHDLLTTLVKKEYEHNKRLQDFKDRIHRQRLTKSKIKENRQQIVRARKYYDDYRVQLCAKMMRMRTREEMIFKKLFEEGLQIQKQRLRDLRNYAKEKRNEEKRQHQNELYSMENYYKDQFSLLAEAISQERQELKAREKSQAQTLHKVKRELRAKMEKEIQQLQYIITQNDDDAFFRELEAERFKARLQLASFQYSKNPFPRGQAS", "length": 801, "header": "tr|A0A9J7GDM7-1|A0A9J7JZF5_CRIGR Computationally mapped isoform of Centrosomal protein of 95 kDa isoform X2 OS=Cricetulus griseus OX=10029 GN=Cep95 PE=4 SV=1 CANONICAL=A0A9J7JZF5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GDM9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDM9/entry", "sequence": { "sequence": "MASSEAEWVQMANNLLFKCHIHLRIHELEDCDANVFIALYQSILGEKVPDLIVISRSQEDDAHNVQSVIDSLALDYLQVSLSHITGENIVKGDKESIKNLLEIFDGLLEYLTEHISEASHPNSENEKYFKDSYREEPVEELESVKESKSPWKKVSFGRCSFSSDTLGPTWDEDEAESTGEIIRLGDTAHTFSIRSHGAQNSMDMQSSKVLASPGTKPYEEVWNPISLSFPSKNGMTFEAAETPSLSMVTSARKLGEPIRAAIPLHPPYHPSESRAPCPIGKEYLRSSHHYSPAVTSGEHSALYVEPDDKVVLTSMLSKDDEQETCLAPTQSPRTRRLPKGKRNENRAVASSEYRPCPQKARKWLTEEELHAVSEKLNQRLSELDWMLKNALGNRAADRTDGETGDEEVHGGNEEELLSQNSDSIMECGPKKPRPGFFMSRKSPYRSHSLSPSSVNKHRQLEKEHKTQHKSKGPGSRRLQAEALTEAFERELRKNKVQENIGLRGISDEEASAEETVVKVNECSLLPLMLEQFPFLYVSDPTLTKMWKQQIAQIEQLKREAQRENRSKKKLQDEIEEALRRHDLLTTLVKKEYEHNKRLQDFKDRIHRQRLTKSKIKENRQQIVRARKYYDDYRVQLCAKMMRMRTREEMIFKKLFEEGLQIQKQRLRDLRNYAKEKRNEEKRQHQNELYSMENYYKDQFSLLAEAISQERQELKAREKSQAQTLHKVKRELRAKMEKEIQQLQYIITQNDDDAFFRELEAERFKARLQLASFQYSKNPFPRGQAS", "length": 785, "header": "tr|A0A9J7GDM9-1|A0A9J7JZF5_CRIGR Computationally mapped isoform of Centrosomal protein of 95 kDa isoform X2 OS=Cricetulus griseus OX=10029 GN=Cep95 PE=4 SV=1 CANONICAL=A0A9J7JZF5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GEQ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEQ1/entry", "sequence": { "sequence": "MASSEAEWVQMANNLLFKCHIHLRIHELEDCDANVFIALYQSILGEKVPDLIVISRSQEDDAHNVQSVIDSLALDYLQVSLSHITGENIVKGDKESIKNLLEIFDGLLEYLTEHISEASHPNSENEKYFKDSYREEPVEELESVKESKSPWKKVSFGRCSFSSDTLGPTWDEDEAESTGEIIRLGDTAHTFSIRSHGAQNSMDMQSSKVLASPGTKPYEEVWNPISLSFPSKNGMTFEAAETPSLSMVTSARKLGKEYLRSSHHYSPAVTSGEHSALYVEPDDKVVLTSMLSKDDEQETCLAPTQSPRTRRLPKGKRNENRAVASSEYRPCPQKARKWLTEEELHAVSEKLNQRLSELDWMLKNALGNRAADRTDGETGDEEVHGGNEEELLSQNSDSIMECGPKKPRPGFFMSRKSPYRSHSLSPSSVNKHRQLEKEHKTQHKSKGPGSRRLQAEALTEAFERELRKNKVQENIGLRGISDEEASAEETEKAYREVIPKGTPKQSQIQRIYSRKTAAPSPKGGSLKSSKAAMMKVNECSLLPLMLEQFPFLYVSDPTLTKMWKQQIAQIEQLKREAQRENRSKKKLQDEIEEALRRHDLLTTLVKKEYEHNKRLQDFKDRIHRQRLTKSKIKENRQQIVRARKYYDDYRVQLCAKMMRMRTREEMIFKKLFEEGLQIQKQRLRDLRNYAKEKRNEEKRQHQNELYSMENYYKDQFSLLAEAISQERQELKAREKSQAQTLHKVKRELRAKMEKEIQQLQYIITQNDDDAFFRELEAERFKARLQLASFQYSKNPFPRGQAS", "length": 802, "header": "tr|A0A9J7GEQ1-1|A0A9J7JZF5_CRIGR Computationally mapped isoform of Centrosomal protein of 95 kDa isoform X2 OS=Cricetulus griseus OX=10029 GN=Cep95 PE=4 SV=1 CANONICAL=A0A9J7JZF5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GI79-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI79/entry", "sequence": { "sequence": "MASSEAEWVQMANNLLFKCHIHLRIHELEDCDANVFIALYQSILGEKVPDLIVISRSQEDDAHNVQSVIDSLALDYLQVSLSHITGENIVKGDKESIKNLLEIFDGLLEYLTEHISEASHPNSENEKYFKDSYREEPVEELESVKESKSPWKKVSFGRCSFSSDTLGPTWDEDEAESTGEIIRLGDTAHTFSIRSHGAQNSMDMQSSKVLASPGTKPYEEVWNPISLSFPSKNGMTFEAAETPSLSMVTSARKLGEPIRAAIPLHPPYHPSESRAPCPIGKEYLRSSHHYSPAVTSGEHSALYVEPDDKVVLTSMLSKDDEQETCLAPTQSPRTRRLPKGKRNENRAVASSEYRPCPQKARKWLTEEELHAVSEKLNQRLSELDWMLKNALGNRAADRTDGETGDEEVHGGNEEELLSQNSDSIMECGPKKPRPGFFMSRKSPYRSHSLSPSSVNKHRQLEKEHKTQHKSKGPGSRRLQAEALTEAFERELRKNKVQENIGLRGISDEEASAEETEKAYREVIPKGTPKQSQIQRIYSRKTAAPSPKGGSLKSSKAAMMKVNECSLLPLMLEQFPFLYVSDPTLTKMWKQQIAQIEQLKREAQRENRSKKKLQDEIEEALRRHDLLTTLVKKEYEHNKRLIFKKLFEEGLQIQKQRLRDLRNYAKEKRNEEKRQHQNELYSMENYYKDQFSLLAEAISQERQELKAREKSQAQTLHKVKRELRAKMEKEIQQLQYIITQNDDDAFFRELEAERFKARLQLASFQYSKNPFPRGQAS", "length": 776, "header": "tr|A0A9J7GI79-1|A0A9J7JZF5_CRIGR Computationally mapped isoform of Centrosomal protein of 95 kDa isoform X2 OS=Cricetulus griseus OX=10029 GN=Cep95 PE=4 SV=1 CANONICAL=A0A9J7JZF5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JZF5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZF5/entry", "sequence": { "sequence": "MASSEAEWVQMANNLLFKCHIHLRIHELEDCDANVFIALYQSILGEKVPDLIVISRSQEDDAHNVQSVIDSLALDYLQVSLSHITGENIVKGDKESIKNLLEIFDGLLEYLTEHISEASHPNSENEKYFKDSYREEPVEELESVKESKSPWKKVSFGRCSFSSDTLGPTWDEDEAESTGEIIRLGDTAHTFSIRSHGAQNSMDMQSSKVLASPGTKPYEEVWNPISLSFPSKNGMTFEAAETPSLSMVTSARKLGEPIRAAIPLHPPYHPSESRAPCPIGKEYLRSSHHYSPAVTSGEHSALYVEPDDKVVLTSMLSKDDEQETCLAPTQSPRTRRLPKGKRNENRAVASSEYRPCPQKARKWLTEEELHAVSEKLNQRLSELDWMLKNALGNRAADRTDGETGDEEVHGGNEEELLSQNSDSIMECGPKKPRPGFFMSRKSPYRSHSLSPSSVNKHRQLEKEHKTQHKSKGPGSRRLQAEALTEAFERELRKNKVQENIGLRGISDEEASAEETEKAYREVIPKGTPKQSQIQRIYSRKTAAPSPKGGSLKSSKAAMMKVNECSLLPLMLEQFPFLYVSDPTLTKMWKQQIAQIEQLKREAQRENRSKKKLQDEIEEALRRHDLLTTLVKKEYEHNKRLQDFKDRIHRQRLTKSKIKENRQQIVRARKYYDDYRVQLCAKMMRMRTREEMIFKKLFEEGLQIQKQRLRDLRNYAKEKRNEEKRQHQNELYSMENYYKDQFSLLAEAISQERQELKAREKSQAQTLHKVKRELRAKMEKEIQQLQYIITQNDDDAFFRELEAERFKARLQLASFQYSKNPFPRGQAS", "length": 827, "header": "tr|A0A9J7JZF5-1|A0A9J7JZF5_CRIGR Isoform 1 of Centrosomal protein of 95 kDa isoform X2 OS=Cricetulus griseus OX=10029 GN=Cep95 PE=4 SV=1 CANONICAL=A0A9J7JZF5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QKF3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKF3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QKF3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKF3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100773998", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773998", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "spindle pole", "id": "GO:0000922", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000922", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JZF5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZF5" } ], "pmid": "" }, { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JZF5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZF5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 606, "end_pos": 608, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JZF5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZF5" }, { "id": "PF19016", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19016" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DUF5745", "eco_id": "ECO_0000259", "start_pos": 52, "end_pos": 107, "start_aa": "Ile", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 606, "end_pos": 608 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7K4I5-1", "uniprot_ac": "A0A9J7K4I5", "uniprot_id": "A0A9J7K4I5_CRIGR", "mass": { "chemical_mass": 25326.0, "monoisotopic_mass": 25326.0 }, "refseq": { "ac": "XP_035309031", "name": "transmembrane protein 253 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309031" }, "gene_names": [ { "name": "Tmem253", "type": "recommended", "evidence": [ { "id": "A0A9J7K4I5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4I5" } ] }, { "name": "Tmem253", "type": "synonym", "evidence": [ { "id": "XP_035309031", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309031" } ] } ], "protein_names": [ { "name": "Transmembrane protein 253 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7K4I5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4I5/entry#names_and_taxonomy" } ] }, { "name": "transmembrane protein 253 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_035309031", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309031" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. 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"##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 192 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003616745.1) and transcript sequence (IACG01044248.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035293789", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035293789" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K4B1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4B1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Lrrfip1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4B1", "locus": {} } ], "crossref": [ { "id": "A0A9J7K4B1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K4B1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100689055", "url": "https://www.ncbi.nlm.nih.gov/gene/100689055", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": 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"https://www.uniprot.org/uniprotkb/A0A9J7GSP2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GSP2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GSP2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GU04", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GU04", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GU04-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GU04-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GU97", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GU97", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GU97-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GU97-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GVI8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GVI8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GVI8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GVI8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GVX7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GVX7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GVX7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GVX7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JCR8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCR8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JCR8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCR8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JE99", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JE99", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JE99-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JE99-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K2I9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2I9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K2I9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2I9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K4B1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4B1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K4B1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4B1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K5X9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5X9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K5X9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5X9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDMGTQGSGRKRLPNRERLTAEDDALNQIAREAEARLAAKRAARAEAREIRMKELERQQKETNGYDGDYCGSQSLSRRSGRVEERPDKDFTEKGSRNMPSLSAATLASLGGTSSRRGSGDTSISMDTEASIREIKELNELKDQIQDVEGRYMQGLKEMKDSLAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESQRQYEEKNKEFEREKHAHSILQFQFAEVKEALRQREEMLEALERQKEFFDSIRSERDDLREETVKLKEELKKHGIILNSEIATNGETSDTLNGVGYQGPTKMTKEELNALKSAGEGTLGKAKEVELKKEIVQSMGKGGGTLQNTEQQQPRPNPIKDCVDQGVSHPGENAQDQKPTEDSALSPGPLAGAKCEQQVRSQAQENTSFLKDPEQIESREVTDQPDGRTRNSLEQSNCLGGLDSEESGPAALGIKNQSENSIGLGQTSEGDEVSCTDSRDAGGNHTENVVQAATGEQVGTVASGPLEHHKDTVSHDRRSVNEGAEQSLERELSQEVAEPEEALIQSPPTSKENTVRKTGDKKPIQAEVQATTGAPIVQSGHQDTSVTGATHAPLDEKEPGKEKSEQQAEALDSPQKKSKNRKKKNKKKKPPASVETCKDASKELNCQNTDAHDLEEEESIQFPDKKQTAETQSKETKNPEQKITAGSSEHVECLEDAENESNGKQNQGEEDGVNTRAGDGDTLMCEADAAQSVSTSAEGEETEERDADDPAGGPRDVLDQNSPQCKEEEISPMKKKGPPKRGSEEGHVLSQHPGQMEEKAIDGCSIDNSDLSGELGGCNSESGVQARGEVENSKSKEDCTMS", "length": 844, "header": "tr|A0A9J7K4B1-1|A0A9J7K4B1_CRIGR Isoform 1 of Leucine-rich repeat flightless-interacting protein 1 isoform X16 OS=Cricetulus griseus OX=10029 GN=Lrrfip1 PE=3 SV=1 CANONICAL=A0A9J7K4B1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F7X5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7X5/entry", "sequence": { "sequence": "MDMGTQGSGRKRLPNRERLTAEDDALNQIAREAEARLAAKRAARAEAREIRMKELERQQKEVEERPDKDFTEKGSRNMPSLSAATLASLGGTSSRRGSGDTSISMDTEASIREIKELNELKDQIQDVEGRYMQGLKEMKDSLAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESQRQYEEKNKEFEREKHAHSILQFQFAEVKEALRQREEMLEALERQKEFFDSIRSERDDLREETVKLKEELKKHGIILNSEIATNGETSDTLNGVGYQGPTKMTKEELNALKSAGEGTLDVRLKTLIDERECLLEQIKKLKGQLEGRQKNGKDLLRSEDGILENGTDVHVLDLQRDANRQISDLKFKLAKSEQEITALEQNVIRLESQVTRYRSAAENAEKIEDELKAEKRKLQRELRSALDKTEELEVSNGHLVKRLEKMKANRNALLSQQ", "length": 458, "header": "tr|A0A9J7F7X5-1|A0A9J7K4B1_CRIGR Computationally mapped isoform of Leucine-rich repeat flightless-interacting protein 1 isoform X16 OS=Cricetulus griseus OX=10029 GN=Lrrfip1 PE=3 SV=1 CANONICAL=A0A9J7K4B1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F8P1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8P1/entry", "sequence": { "sequence": "MDMGTQGSGRKRLPNRERLTAEDDALNQIAREAEARLAAKRAARAEAREIRMKELERQQKEVEERPDKDFTEKGSRNMPSLSAATLASLGGTSSRRGSGDTSISMDTEASIREIKDSLAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESQRQYEEKNKEFEREKHAHSILQFQFAEVKEALRQREEMLEKHGIILNSEIATNGETSDTLNGVGYQGPTKMTKEELNALKSAGEGTLGKAKEVELKKEIVQSMGKGGGTLQNTEQQQPRPNPIKDCVDQGVSHPGENAQDQKPTEDSALSPGPLAGAKCEQQVRSQAQENTSFLKDPEQIESREVTDQPDGRTRNSLEQSNCLGGLDSEESGPAALGIKNQSENSIGLGQTSEGDEVSCTDSRDAGGNHTENVVQAATGEQVGTVASGPLEHHKDTVSHDRRSVNEGAEQSLERELSQEVAEPEEALIQSPPTSKENTVRKTGDKKPIQAEVQATTGAPIVQSGHQDTSVTGATHAPLDEKEPGKEKSEQQAEALDSPQKKSKNRKKKNKKKKPPASVETCKDASKELNCQNTDAHDLEEEESIQFPDKKQTAETQSKETKNPEQKITAGSSEHVECLEDAENESNGKQNQGEEDGVNTRAGDGDTLMCEADAAQSVSTSAEGEETEERDADDPAGGPRDVLDQNSPQCKEEEISPMKKKGPPKRGSEEGHVLSQHPGQMEEKAIDGCSIDNSDLSGELGGCNSESGVQARGEVENSKSKEDCTMS", "length": 769, "header": "tr|A0A9J7F8P1-1|A0A9J7K4B1_CRIGR Computationally mapped isoform of Leucine-rich repeat flightless-interacting protein 1 isoform X16 OS=Cricetulus griseus OX=10029 GN=Lrrfip1 PE=3 SV=1 CANONICAL=A0A9J7K4B1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FC36-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FC36/entry", "sequence": { "sequence": "MTSPAGAKNQEIDCLSPEAQRLAEARLAAKRAARAEAREIRMKELERQQKEVEERPDKDFTEKGSRNMPSLSAATLASLGGTSSRRGSGDTSISMDTEASIREIKDSLAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESQRQYEEKNKEFEREKHAHSILQFQFAEVKEALRQREEMLEKHGIILNSEIATNGETSDTLNGVGYQGPTKMTKEELNALKSAGEGTLDVRLKTLIDERECLLEQIKKLKGQLEGRQKNGKDLLRSEDGILENGTDVHVLDLQRDANRQISDLKFKLAKSEQEITALEQNVIRLESQVTRYRSAAENAEKIEDELKAEKRKLQRELRSALDKTEELEVSNGHLVKRLEKMKANRNALLSQQ", "length": 393, "header": "tr|A0A9J7FC36-1|A0A9J7K4B1_CRIGR Computationally mapped isoform of Leucine-rich repeat flightless-interacting protein 1 isoform X16 OS=Cricetulus griseus OX=10029 GN=Lrrfip1 PE=3 SV=1 CANONICAL=A0A9J7K4B1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FCA5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCA5/entry", "sequence": { "sequence": "MTSPAGAKNQEIDCLSPEAQRLAEARLAAKRAARAEAREIRMKELERQQKEVEERPDKDFTEKGSRNMPSLSAATLASLGGTSSRRGSGDTSISMDTEASIREIKDSLAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESQRQYEEKNKEFEREKHAHSILQFQFAEVKEALRQREEMLEKHGIILNSEIATNGETSDTLNGVGYQGPTKMTKEELNALKSAGEGTLGKAKEVELKKEIVQSMGKGGGTLQNTEQQQPRPNPIKDCVDQGVSHPGENAQDQKPTEDSALSPGPLAGAKCEQQVRSQAQENTSFLKDPEQIESREVTDQPDGRTRNSLEQSNCLGGLDSEESGPAALGIKNQSENSIGLGQTSEGDEVSCTDSRDAGGNHTENVVQAATGEQVGTVASGPLEHHKDTVSHDRRSVNEGAEQSLERELSQEVAEPEEALIQSPPTSKENTVRKTGDKKPIQAEVQATTGAPIVQSGHQDTSVTGATHAPLDEKEPGKEKSEQQAEALDSPQKKSKNRKKKNKKKKPPASVETCKDASKELNCQNTDAHDLEEEESIQFPDKKQTAETQSKETKNPEQKITAGSSEHVECLEDAENESNGKQNQGEEDGVNTRAGDGDTLMCEADAAQSVSTSAEGEETEERDADDPAGGPRDVLDQNSPQCKEEEISPMKKKGPPKRGSEEGHVLSQHPGQMEEKAIDGCSIDNSDLSGELGGCNSESGVQARGEVENSKSKEDCTMS", "length": 759, "header": "tr|A0A9J7FCA5-1|A0A9J7K4B1_CRIGR Computationally mapped isoform of Leucine-rich repeat flightless-interacting protein 1 isoform X16 OS=Cricetulus griseus OX=10029 GN=Lrrfip1 PE=3 SV=1 CANONICAL=A0A9J7K4B1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FCV4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCV4/entry", "sequence": { "sequence": "MDMGTQGSGRKRLPNRERLTAEDDALNQIAREAEARLAAKRAARAEAREIRMKELERQQKEVEERPDKDFTEKGSRNMPSLSAATLASLGGTSSRRGSGDTSISMDTEASIREIKELNELKDQIQDVEGRYMQGLKEMKDSLAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESQRQYEEKNKEFEREKHAHSILQFQFAEVKEALRQREEMLEKHGIILNSEIATNGETSDTLNGVGYQGPTKMTKEELNALKSAGEGTLDVRLKTLIDERECLLEQIKKLKGQLEGRQKNGKDLLRSEDGILENGTDVHVLDLQRDANRQISDLKFKLAKSEQEITALEQNVIRLESQVTRYRSAAENAEKIEDELKAEKRKLQRELRSALDKTEELEVSNGHLVKRLEKMKANRNALLSQQ", "length": 427, "header": "tr|A0A9J7FCV4-1|A0A9J7K4B1_CRIGR Computationally mapped isoform of Leucine-rich repeat flightless-interacting protein 1 isoform X16 OS=Cricetulus griseus OX=10029 GN=Lrrfip1 PE=3 SV=1 CANONICAL=A0A9J7K4B1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GQA6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GQA6/entry", "sequence": { "sequence": "MDMGTQGSGRKRLPNRERLTAEDDALNQIAREAEARLAAKRAARAEAREIRMKELERQQKETNGYDGDYCGSQSLSRRSGRVEERPDKDFTEKGSRNMPSLSAATLASLGGTSSRRGSGDTSISMDTEASIREIKDSLAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESQRQYEEKNKEFEREKHAHSILQFQFAEVKEALRQREEMLEALERQKEFFDSIRSERDDLREETVKLKEELKKHGIILNSEIATNGETSDTLNGVGYQGPTKMTKEELNALKSAGEGTLGKAKEVELKKEIVQSMGKGGGTLQNTEQQQPRPNPIKDCVDQGVSHPGENAQDQKPTEDSALSPGPLAGAKCEQQVRSQAQENTSFLKDPEQIESREVTDQPDGRTRNSLEQSNCLGGLDSEESGPAALGIKNQSENSIGLGQTSEGDEVSCTDSRDAGGNHTENVVQAATGEQVGTVASGPLEHHKDTVSHDRRSVNEGAEQSLERELSQEVAEPEEALIQSPPTSKENTVRKTGDKKPIQAEVQATTGAPIVQSGHQDTSVTGATHAPLDEKEPGKEKSEQQAEALDSPQKKSKNRKKKNKKKKPPASVETCKDASKELNCQNTDAHDLEEEESIQFPDKKQTAETQSKETKNPEQKITAGSSEHVECLEDAENESNGKQNQGEEDGVNTRAGDGDTLMCEADAAQSVSTSAEGEETEERDADDPAGGPRDVLDQNSPQCKEEEISPMKKKGPPKRGSEEGHVLSQHPGQMEEKAIDGCSIDNSDLSGELGGCNSESGVQARGEVENSKSKEDCTMS", "length": 820, "header": "tr|A0A9J7GQA6-1|A0A9J7GQA6_CRIGR Computationally mapped isoform of Leucine-rich repeat flightless-interacting protein 1 isoform X19 OS=Cricetulus griseus OX=10029 GN=Lrrfip1 PE=3 SV=1 CANONICAL=A0A9J7K4B1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GQW9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GQW9/entry", "sequence": { "sequence": "MDMGTQGSGRKRLPNRERLTAEDDALNQIAREAEARLAAKRAARAEAREIRMKELERQQKEVEERPDKDFTEKGSRNMPSLSAATLASLGGTSSRRGSGDTSISMDTEASIREIKELNELKDQIQDVEGRYMQGLKEMKDSLAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESQRQYEEKNKEFEREKHAHSILQFQFAEVKEALRQREEMLEALERQKEFFDSIRSERDDLREETVKLKEELKKHGIILNSEIATNGETSDTLNGVGYQGPTKMTKEELNALKSAGEGTLGKAKEVELKKEIVQSMGKGGGTLQNTEQQQPRPNPIKDCVDQGVSHPGENAQDQKPTEDSALSPGPLAGAKCEQQVRSQAQENTSFLKDPEQIESREVTDQPDGRTRNSLEQSNCLGGLDSEESGPAALGIKNQSENSIGLGQTSEGDEVSCTDSRDAGGNHTENVVQAATGEQVGTVASGPLEHHKDTVSHDRRSVNEGAEQSLERELSQEVAEPEEALIQSPPTSKENTVRKTGDKKPIQAEVQATTGAPIVQSGHQDTSVTGATHAPLDEKEPGKEKSEQQAEALDSPQKKSKNRKKKNKKKKPPASVETCKDASKELNCQNTDAHDLEEEESIQFPDKKQTAETQSKETKNPEQKITAGSSEHVECLEDAENESNGKQNQGEEDGVNTRAGDGDTLMCEADAAQSVSTSAEGEETEERDADDPAGGPRDVLDQNSPQCKEEEISPMKKKGPPKRGSEEGHVLSQHPGQMEEKAIDGCSIDNSDLSGELGGCNSESGVQARGEVENSKSKEDCTMS", "length": 824, "header": "tr|A0A9J7GQW9-1|A0A9J7GQW9_CRIGR Computationally mapped isoform of Leucine-rich repeat flightless-interacting protein 1 isoform X18 OS=Cricetulus griseus OX=10029 GN=Lrrfip1 PE=3 SV=1 CANONICAL=A0A9J7K4B1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GRT5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GRT5/entry", "sequence": { "sequence": "MDMGTQGSGRKRLPNRERLTAEDDALNQIAREAEARLAAKRAARAEAREIRMKELERQQKETNGYDGDYCGSQSLSRRSGRVEERPDKDFTEKGSRNMPSLSAATLASLGGTSSRRGSGDTSISMDTEASIREIKDSLAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESQRQYEEKNKEFEREKHAHSILQFQFAEVKEALRQREEMLEKHGIILNSEIATNGETSDTLNGVGYQGPTKMTKEELNALKSAGEGTLGKAKEVELKKEIVQSMGKGGGTLQNTEQQQPRPNPIKDCVDQGVSHPGENAQDQKPTEDSALSPGPLAGAKCEQQVRSQAQENTSFLKDPEQIESREVTDQPDGRTRNSLEQSNCLGGLDSEESGPAALGIKNQSENSIGLGQTSEGDEVSCTDSRDAGGNHTENVVQAATGEQVGTVASGPLEHHKDTVSHDRRSVNEGAEQSLERELSQEVAEPEEALIQSPPTSKENTVRKTGDKKPIQAEVQATTGAPIVQSGHQDTSVTGATHAPLDEKEPGKEKSEQQAEALDSPQKKSKNRKKKNKKKKPPASVETCKDASKELNCQNTDAHDLEEEESIQFPDKKQTAETQSKETKNPEQKITAGSSEHVECLEDAENESNGKQNQGEEDGVNTRAGDGDTLMCEADAAQSVSTSAEGEETEERDADDPAGGPRDVLDQNSPQCKEEEISPMKKKGPPKRGSEEGHVLSQHPGQMEEKAIDGCSIDNSDLSGELGGCNSESGVQARGEVENSKSKEDCTMS", "length": 789, "header": "tr|A0A9J7GRT5-1|A0A9J7GRT5_CRIGR Computationally mapped isoform of Leucine-rich repeat flightless-interacting protein 1 isoform X25 OS=Cricetulus griseus OX=10029 GN=Lrrfip1 PE=3 SV=1 CANONICAL=A0A9J7K4B1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GRT8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GRT8/entry", "sequence": { "sequence": "MTSPAGAKNQEIDCLSPEAQRLAEARLAAKRAARAEAREIRMKELERQQKETNGYDGDYCGSQSLSRRSGRVEERPDKDFTEKGSRNMPSLSAATLASLGGTSSRRGSGDTSISMDTEASIREIKELNELKDQIQDVEGRYMQGLKEMKDSLAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESQRQYEEKNKEFEREKHAHSILQFQFAEVKEALRQREEMLEALERQKEFFDSIRSERDDLREETVKLKEELKKHGIILNSEIATNGETSDTLNGVGYQGPTKMTKEELNALKSAGEGTLGKAKEVELKKEIVQSMGKGGGTLQNTEQQQPRPNPIKDCVDQGVSHPGENAQDQKPTEDSALSPGPLAGAKCEQQVRSQAQENTSFLKDPEQIESREVTDQPDGRTRNSLEQSNCLGGLDSEESGPAALGIKNQSENSIGLGQTSEGDEVSCTDSRDAGGNHTENVVQAATGEQVGTVASGPLEHHKDTVSHDRRSVNEGAEQSLERELSQEVAEPEEALIQSPPTSKENTVRKTGDKKPIQAEVQATTGAPIVQSGHQDTSVTGATHAPLDEKEPGKEKSEQQAEALDSPQKKSKNRKKKNKKKKPPASVETCKDASKELNCQNTDAHDLEEEESIQFPDKKQTAETQSKETKNPEQKITAGSSEHVECLEDAENESNGKQNQGEEDGVNTRAGDGDTLMCEADAAQSVSTSAEGEETEERDADDPAGGPRDVLDQNSPQCKEEEISPMKKKGPPKRGSEEGHVLSQHPGQMEEKAIDGCSIDNSDLSGELGGCNSESGVQARGEVENSKSKEDCTMS", "length": 834, "header": "tr|A0A9J7GRT8-1|A0A9J7GRT8_CRIGR Computationally mapped isoform of Leucine-rich repeat flightless-interacting protein 1 isoform X17 OS=Cricetulus griseus OX=10029 GN=Lrrfip1 PE=3 SV=1 CANONICAL=A0A9J7K4B1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GSP2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GSP2/entry", "sequence": { "sequence": "MDMGTQGSGRKRLPNRERLTAEDDALNQIAREAEARLAAKRAARAEAREIRMKELERQQKETNGYDGDYCGSQSLSRRSGRVEERPDKDFTEKGSRNMPSLSAATLASLGGTSSRRGSGDTSISMDTEASIREIKELNELKDQIQDVEGRYMQGLKEMKDSLAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESQRQYEEKNKEFEREKHAHSILQFQFAEVKEALRQREEMLEALERQKEFFDSIRSERDDLREETVKLKEELKKHGIILNSEIATNGETSDTLNGVGYQGPTKMTKEELNALKSAGEGTLDVRLKTLIDERECLLEQIKKLKGQLEGRQKNGKDLLRSEDGILENGTDVHVLDLQRDANRQISDLKFKLAKSEQEITALEQNVIRLESQVTRYRSAAENAEKIEDELKAEKRKLQRELRSALDKTEELEVSNGHLVKRLEKMKANRNALLSQQ", "length": 478, "header": "tr|A0A9J7GSP2-1|A0A9J7GSP2_CRIGR Computationally mapped isoform of Leucine-rich repeat flightless-interacting protein 1 isoform X29 OS=Cricetulus griseus OX=10029 GN=Lrrfip1 PE=3 SV=1 CANONICAL=A0A9J7K4B1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GU04-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GU04/entry", "sequence": { "sequence": "MDTQAEARLAAKRAARAEAREIRMKELERQQKEVEERPDKDFTEKGSRNMPSLSAATLASLGGTSSRRGSGDTSISMDTEASIREIKELNELKDQIQDVEGRYMQGLKEMKDSLAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESQRQYEEKNKEFEREKHAHSILQFQFAEVKEALRQREEMLEALERQKEFFDSIRSERDDLREETVKLKEELKKHGIILNSEIATNGETSDTLNGVGYQGPTKMTKEELNALKSAGEGTLGKAKEVELKKEIVQSMGKGGGTLQNTEQQQPRPNPIKDCVDQGVSHPGENAQDQKPTEDSALSPGPLAGAKCEQQVRSQAQENTSFLKDPEQIESREVTDQPDGRTRNSLEQSNCLGGLDSEESGPAALGIKNQSENSIGLGQTSEGDEVSCTDSRDAGGNHTENVVQAATGEQVGTVASGPLEHHKDTVSHDRRSVNEGAEQSLERELSQEVAEPEEALIQSPPTSKENTVRKTGDKKPIQAEVQATTGAPIVQSGHQDTSVTGATHAPLDEKEPGKEKSEQQAEALDSPQKKSKNRKKKNKKKKPPASVETCKDASKELNCQNTDAHDLEEEESIQFPDKKQTAETQSKETKNPEQKITAGSSEHVECLEDAENESNGKQNQGEEDGVNTRAGDGDTLMCEADAAQSVSTSAEGEETEERDADDPAGGPRDVLDQNSPQCKEEEISPMKKKGPPKRGSEEGHVLSQHPGQMEEKAIDGCSIDNSDLSGELGGCNSESGVQARGEVENSKSKEDCTMS", "length": 796, "header": "tr|A0A9J7GU04-1|A0A9J7GU04_CRIGR Computationally mapped isoform of Leucine-rich repeat flightless-interacting protein 1 isoform X24 OS=Cricetulus griseus OX=10029 GN=Lrrfip1 PE=3 SV=1 CANONICAL=A0A9J7K4B1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GU97-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GU97/entry", "sequence": { "sequence": "MDMGTQGSGRKRLPNRERLTAEDDALNQIAREAEARLAAKRAARAEAREIRMKELERQQKETNGYDGDYCGSQSLSRRSGRVEERPDKDFTEKGSRNMPSLSAATLASLGGTSSRRGSGDTSISMDTEASIREIKELNELKDQIQDVEGRYMQGLKEMKDSLAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESQRQYEEKNKEFEREKHAHSILQFQFAEVKEALRQREEMLEKHGIILNSEIATNGETSDTLNGVGYQGPTKMTKEELNALKSAGEGTLGKAKEVELKKEIVQSMGKGGGTLQNTEQQQPRPNPIKDCVDQGVSHPGENAQDQKPTEDSALSPGPLAGAKCEQQVRSQAQENTSFLKDPEQIESREVTDQPDGRTRNSLEQSNCLGGLDSEESGPAALGIKNQSENSIGLGQTSEGDEVSCTDSRDAGGNHTENVVQAATGEQVGTVASGPLEHHKDTVSHDRRSVNEGAEQSLERELSQEVAEPEEALIQSPPTSKENTVRKTGDKKPIQAEVQATTGAPIVQSGHQDTSVTGATHAPLDEKEPGKEKSEQQAEALDSPQKKSKNRKKKNKKKKPPASVETCKDASKELNCQNTDAHDLEEEESIQFPDKKQTAETQSKETKNPEQKITAGSSEHVECLEDAENESNGKQNQGEEDGVNTRAGDGDTLMCEADAAQSVSTSAEGEETEERDADDPAGGPRDVLDQNSPQCKEEEISPMKKKGPPKRGSEEGHVLSQHPGQMEEKAIDGCSIDNSDLSGELGGCNSESGVQARGEVENSKSKEDCTMS", "length": 813, "header": "tr|A0A9J7GU97-1|A0A9J7GU97_CRIGR Computationally mapped isoform of Leucine-rich repeat flightless-interacting protein 1 isoform X22 OS=Cricetulus griseus OX=10029 GN=Lrrfip1 PE=3 SV=1 CANONICAL=A0A9J7K4B1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GVI8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GVI8/entry", "sequence": { "sequence": "MDTQAEARLAAKRAARAEAREIRMKELERQQKETNGYDGDYCGSQSLSRRSGRVEERPDKDFTEKGSRNMPSLSAATLASLGGTSSRRGSGDTSISMDTEASIREIKELNELKDQIQDVEGRYMQGLKEMKDSLAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESQRQYEEKNKEFEREKHAHSILQFQFAEVKEALRQREEMLEALERQKEFFDSIRSERDDLREETVKLKEELKKHGIILNSEIATNGETSDTLNGVGYQGPTKMTKEELNALKSAGEGTLGKAKEVELKKEIVQSMGKGGGTLQNTEQQQPRPNPIKDCVDQGVSHPGENAQDQKPTEDSALSPGPLAGAKCEQQVRSQAQENTSFLKDPEQIESREVTDQPDGRTRNSLEQSNCLGGLDSEESGPAALGIKNQSENSIGLGQTSEGDEVSCTDSRDAGGNHTENVVQAATGEQVGTVASGPLEHHKDTVSHDRRSVNEGAEQSLERELSQEVAEPEEALIQSPPTSKENTVRKTGDKKPIQAEVQATTGAPIVQSGHQDTSVTGATHAPLDEKEPGKEKSEQQAEALDSPQKKSKNRKKKNKKKKPPASVETCKDASKELNCQNTDAHDLEEEESIQFPDKKQTAETQSKETKNPEQKITAGSSEHVECLEDAENESNGKQNQGEEDGVNTRAGDGDTLMCEADAAQSVSTSAEGEETEERDADDPAGGPRDVLDQNSPQCKEEEISPMKKKGPPKRGSEEGHVLSQHPGQMEEKAIDGCSIDNSDLSGELGGCNSESGVQARGEVENSKSKEDCTMS", "length": 816, "header": "tr|A0A9J7GVI8-1|A0A9J7GVI8_CRIGR Computationally mapped isoform of Leucine-rich repeat flightless-interacting protein 1 isoform X20 OS=Cricetulus griseus OX=10029 GN=Lrrfip1 PE=3 SV=1 CANONICAL=A0A9J7K4B1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GVX7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GVX7/entry", "sequence": { "sequence": "MVVVIQHRILLSAQPFVCFLSVCSSPQEIRQLQQKQAGFIREISDLQETIEWKDKKIGALERQKEFFDSIRSERDDLREETVKLKEELKKHGIILNSEIATNGETSDTLNGVGYQGPTKMTKEELNALKSAGEGTLGKAKEVELKKEIVQSMGKGGGTLQNTEQQQPRPNPIKDCVDQGVSHPGENAQDQKPTEDSALSPGPLAGAKCEQQVRSQAQENTSFLKDPEQIESREVTDQPDGRTRNSLEQSNCLGGLDSEESGPAALGIKNQSENSIGLGQTSEGDEVSCTDSRDAGGNHTENVVQAATGEQVGTVASGPLEHHKDTVSHDRRSVNEGAEQSLERELSQEVAEPEEALIQSPPTSKENTVRKTGDKKPIQAEVQATTGAPIVQSGHQDTSVTGATHAPLDEKEPGKEKSEQQAEALDSPQKKSKNRKKKNKKKKPPASVETCKDASKELNCQNTDAHDLEEEESIQFPDKKQTAETQSKETKNPEQKITAGSSEHVECLEDAENESNGKQNQGEEDGVNTRAGDGDTLMCEADAAQSVSTSAEGEETEERDADDPAGGPRDVLDQNSPQCKEEEISPMKKKGPPKRGSEEGHVLSQHPGQMEEKAIDGCSIDNSDLSGELGGCNSESGVQARGEVENSKSKEDCTMS", "length": 655, "header": "tr|A0A9J7GVX7-1|A0A9J7GVX7_CRIGR Computationally mapped isoform of Leucine-rich repeat flightless-interacting protein 1 isoform X28 OS=Cricetulus griseus OX=10029 GN=Lrrfip1 PE=3 SV=1 CANONICAL=A0A9J7K4B1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JCR8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCR8/entry", "sequence": { "sequence": "MDMGTQGSGRKRLPNRERLTAEDDALNQIAREAEARLAAKRAARAEAREIRMKELERQQKEVEERPDKDFTEKGSRNMPSLSAATLASLGGTSSRRGSGDTSISMDTEASIREIKDSLAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESQRQYEEKNKEFEREKHAHSILQFQFAEVKEALRQREEMLEALERQKEFFDSIRSERDDLREETVKLKEELKKHGIILNSEIATNGETSDTLNGVGYQGPTKMTKEELNALKSAGEGTLGKAKEVELKKEIVQSMGKGGGTLQNTEQQQPRPNPIKDCVDQGVSHPGENAQDQKPTEDSALSPGPLAGAKCEQQVRSQAQENTSFLKDPEQIESREVTDQPDGRTRNSLEQSNCLGGLDSEESGPAALGIKNQSENSIGLGQTSEGDEVSCTDSRDAGGNHTENVVQAATGEQVGTVASGPLEHHKDTVSHDRRSVNEGAEQSLERELSQEVAEPEEALIQSPPTSKENTVRKTGDKKPIQAEVQATTGAPIVQSGHQDTSVTGATHAPLDEKEPGKEKSEQQAEALDSPQKKSKNRKKKNKKKKPPASVETCKDASKELNCQNTDAHDLEEEESIQFPDKKQTAETQSKETKNPEQKITAGSSEHVECLEDAENESNGKQNQGEEDGVNTRAGDGDTLMCEADAAQSVSTSAEGEETEERDADDPAGGPRDVLDQNSPQCKEEEISPMKKKGPPKRGSEEGHVLSQHPGQMEEKAIDGCSIDNSDLSGELGGCNSESGVQARGEVENSKSKEDCTMS", "length": 800, "header": "tr|A0A9J7JCR8-1|A0A9J7JCR8_CRIGR Computationally mapped isoform of Leucine-rich repeat flightless-interacting protein 1 isoform X23 OS=Cricetulus griseus OX=10029 GN=Lrrfip1 PE=3 SV=1 CANONICAL=A0A9J7K4B1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JE99-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JE99/entry", "sequence": { "sequence": "MDMGTQGSGRKRLPNRERLTAEDDALNQIAREAEARLAAKRAARAEAREIRMKELERQQKEVEERPDKDFTEKGSRNMPSLSAATLASLGGTSSRRGSGDTSISMDTEASIREIKDSLAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESQRQYEEKNKEFEREKHAHSILQFQFAEVKEALRQREEMLEKHGIILNSEIATNGETSDTLNGVGYQGPTKMTKEELNALKSAGEGTLDVRLKTLIDERECLLEQIKKLKGQLEGRQKNGKDLLRSEDGILENGTDVHVLDLQRDANRQISDLKFKLAKSEQEITALEQNVIRLESQVTRYRSAAENAEKIEDELKAEKRKLQRELRSALDKTEELEVSNGHLVKRLEKMKANRNALLSQQ", "length": 403, "header": "tr|A0A9J7JE99-1|A0A9J7JE99_CRIGR Computationally mapped isoform of Leucine-rich repeat flightless-interacting protein 1 isoform X32 OS=Cricetulus griseus OX=10029 GN=Lrrfip1 PE=3 SV=1 CANONICAL=A0A9J7K4B1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K2I9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2I9/entry", "sequence": { "sequence": "MDMGTQGSGRKRLPNRERLTAEDDALNQIAREAEARLAAKRAARAEAREIRMKELERQQKEIYQVQKKYYGLDTKWGDIEQWMEDSERYSRRFRRNTSASDEDERLSVGSRGSLRTNGYDGDYCGSQSLSRRSGRVEERPDKDFTEKGSRNMPSLSAATLASLGGTSSRRGSGDTSISMDTEASIREIKELNELKDQIQDVEGRYMQGLKEMKDSLAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESQRQYEEKNKEFEREKHAHSILQFQFAEVKEALRQREEMLEEIRQLQQKQAGFIREISDLQETIEWKDKKIGALERQKEFFDSIRSERDDLREETVKLKEELKKHGIILNSEIATNGETSDTLNGVGYQGPTKMTKEELNALKSAGEGTLDVRLKTLIDERECLLEQIKKLKGQLEGRQKNGKDLLRSEDGILENGTDVHVLDLQRDANRQISDLKFKLAKSEQEITALEQNVIRLESQVTRYRSAAENAEKIEDELKAEKRKLQRELRSALDKTEELEVSNGHLVKRLEKMKANRNALLSQQ", "length": 563, "header": "tr|A0A9J7K2I9-1|A0A9J7K2I9_CRIGR Computationally mapped isoform of Leucine-rich repeat flightless-interacting protein 1 isoform X34 OS=Cricetulus griseus OX=10029 GN=Lrrfip1 PE=3 SV=1 CANONICAL=A0A9J7K4B1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K4B1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4B1/entry", "sequence": { "sequence": "MDMGTQGSGRKRLPNRERLTAEDDALNQIAREAEARLAAKRAARAEAREIRMKELERQQKETNGYDGDYCGSQSLSRRSGRVEERPDKDFTEKGSRNMPSLSAATLASLGGTSSRRGSGDTSISMDTEASIREIKELNELKDQIQDVEGRYMQGLKEMKDSLAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESQRQYEEKNKEFEREKHAHSILQFQFAEVKEALRQREEMLEALERQKEFFDSIRSERDDLREETVKLKEELKKHGIILNSEIATNGETSDTLNGVGYQGPTKMTKEELNALKSAGEGTLGKAKEVELKKEIVQSMGKGGGTLQNTEQQQPRPNPIKDCVDQGVSHPGENAQDQKPTEDSALSPGPLAGAKCEQQVRSQAQENTSFLKDPEQIESREVTDQPDGRTRNSLEQSNCLGGLDSEESGPAALGIKNQSENSIGLGQTSEGDEVSCTDSRDAGGNHTENVVQAATGEQVGTVASGPLEHHKDTVSHDRRSVNEGAEQSLERELSQEVAEPEEALIQSPPTSKENTVRKTGDKKPIQAEVQATTGAPIVQSGHQDTSVTGATHAPLDEKEPGKEKSEQQAEALDSPQKKSKNRKKKNKKKKPPASVETCKDASKELNCQNTDAHDLEEEESIQFPDKKQTAETQSKETKNPEQKITAGSSEHVECLEDAENESNGKQNQGEEDGVNTRAGDGDTLMCEADAAQSVSTSAEGEETEERDADDPAGGPRDVLDQNSPQCKEEEISPMKKKGPPKRGSEEGHVLSQHPGQMEEKAIDGCSIDNSDLSGELGGCNSESGVQARGEVENSKSKEDCTMS", "length": 844, "header": "tr|A0A9J7K4B1-1|A0A9J7K4B1_CRIGR Isoform 1 of Leucine-rich repeat flightless-interacting protein 1 isoform X16 OS=Cricetulus griseus OX=10029 GN=Lrrfip1 PE=3 SV=1 CANONICAL=A0A9J7K4B1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K5X9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5X9/entry", "sequence": { "sequence": "MTSPAGAKNQEIDCLSPEAQRLAEARLAAKRAARAEAREIRMKELERQQKEVEERPDKDFTEKGSRNMPSLSAATLASLGGTSSRRGSGDTSISMDTEASIREIKELNELKDQIQDVEGRYMQGLKEMKDSLAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESQRQYEEKNKEFEREKHAHSILQFQFAEVKEALRQREEMLEALERQKEFFDSIRSERDDLREETVKLKEELKKHGIILNSEIATNGETSDTLNGVGYQGPTKMTKEELNALKSAGEGTLGKAKEVELKKEIVQSMGKGGGTLQNTEQQQPRPNPIKDCVDQGVSHPGENAQDQKPTEDSALSPGPLAGAKCEQQVRSQAQENTSFLKDPEQIESREVTDQPDGRTRNSLEQSNCLGGLDSEESGPAALGIKNQSENSIGLGQTSEGDEVSCTDSRDAGGNHTENVVQAATGEQVGTVASGPLEHHKDTVSHDRRSVNEGAEQSLERELSQEVAEPEEALIQSPPTSKENTVRKTGDKKPIQAEVQATTGAPIVQSGHQDTSVTGATHAPLDEKEPGKEKSEQQAEALDSPQKKSKNRKKKNKKKKPPASVETCKDASKELNCQNTDAHDLEEEESIQFPDKKQTAETQSKETKNPEQKITAGSSEHVECLEDAENESNGKQNQGEEDGVNTRAGDGDTLMCEADAAQSVSTSAEGEETEERDADDPAGGPRDVLDQNSPQCKEEEISPMKKKGPPKRGSEEGHVLSQHPGQMEEKAIDGCSIDNSDLSGELGGCNSESGVQARGEVENSKSKEDCTMS", "length": 814, "header": "tr|A0A9J7K5X9-1|A0A9J7K5X9_CRIGR Computationally mapped isoform of Leucine-rich repeat flightless-interacting protein 1 isoform X21 OS=Cricetulus griseus OX=10029 GN=Lrrfip1 PE=3 SV=1 CANONICAL=A0A9J7K4B1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F7X5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7X5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F7X5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7X5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100689055", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100689055", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K4B1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4B1" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K4B1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4B1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 408, "end_pos": 410, "annotation": "n_glycosylation_sequon" }, { "start_pos": 458, "end_pos": 460, "annotation": "n_glycosylation_sequon" }, { "start_pos": 486, "end_pos": 488, "annotation": "n_glycosylation_sequon" }, { "start_pos": 701, "end_pos": 703, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 408, "end_pos": 410 }, { "start_pos": 458, "end_pos": 460 }, { "start_pos": 486, "end_pos": 488 }, { "start_pos": 701, "end_pos": 703 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7K479-1", "uniprot_ac": "A0A9J7K479", "uniprot_id": "A0A9J7K479_CRIGR", "mass": { "chemical_mass": 164963.0, "monoisotopic_mass": 164963.0 }, "refseq": { "ac": "XP_035295243", "name": "nephrocystin-4 isoform X11", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295243" }, "gene_names": [ { "name": "LOC100772374", "type": "recommended", "evidence": [ { "id": "A0A9J7K479", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K479" } ] }, { "name": "LOC100772374", "type": "synonym", "evidence": [ { "id": "XP_035295243", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295243" } ] } ], "protein_names": [ { "name": "Nephrocystin-4 isoform X11", "type": "synonym", "evidence": [ { "id": "A0A9J7K479", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K479/entry#names_and_taxonomy" } ] }, { "name": "nephrocystin-4 isoform X11", "type": "synonym", "evidence": [ { "id": "XP_035295243", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295243" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035295243", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295243" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K479", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K479" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100772374", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K479", "locus": {} } ], "crossref": [ { "id": "cd22239", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22239", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100772374", "url": "https://www.ncbi.nlm.nih.gov/gene/100772374", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058685", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058685", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058686", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058686", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058687", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058687", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058688", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058688", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058764", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058764", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058765", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058765", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772374", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772374", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K479", "url": "https://www.orthodb.org/?gene=A0A9J7K479", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31043", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31043", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31043:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31043:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF26015", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26015", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26173", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26173", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26186", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26186", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26187", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26187", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26189", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26189", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26190", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26190", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF28126", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28126", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035295243", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295243", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F924", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F924", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F924-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F924-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FDB5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDB5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FDB5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDB5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FDZ6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDZ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FDZ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDZ6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GMH2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GMH2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GMH2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GMH2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GMU6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GMU6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GMU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GMU6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GNY2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GNY2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GNY2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GNY2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GSL5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GSL5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GSL5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GSL5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K2R2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2R2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K2R2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2R2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K479", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K479", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K479-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K479-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K4G2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4G2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K4G2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4G2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGSMDGWHRIFTQNTIVPPHPLRARQLGKESTAFQCVLKWLDGPLIKQGILDMLSELECHLRVSLFDVTYKHFFGRTWKTVTKSSNQLSRQPPRIIFNEPFYFHTTLNHPNIVAVVEVVAEGRKRDGALQVLSCGFGILRIFGNKPESPTSAAQDKRLRLYHGTPRALLHPLLQDPIEQSKHMTLMENCSLQYTLKPHPPLEPAFHLLPENLLVSGLQLIPGLLPPHGDMGDALRKPRFQKPTTWHLDDIFFTLYPSLEKFEEELLELLISDHFREGVGLLDGGTLEVLERRLHVCVHNGLGFVHRPQVVVLVPEMDVALTRSASFSRRISASSKSSSGNQALVLRSRLRLPEMVSHPAFAIVFQLEYVFSSPSGADSSAGSSTSLSSLAGMHMVRWAVWNPELEATSGRVTLPLQGGIQHNPSRCLVYKVPSASMSSEEVKQVESGNIQFKFSLSPDIPTEHVSGPKTERCSFRKTPVSPSGTPAPEAQDLAAIQDSPVGPGLSLSQLAASPQSPAPPRSSSKPPPGSLDSPQSPQGPQLQAQESVLEGGISHLEADLSQTTSTSVLGTPAVDHLQELPFTPLHAPIVVGAQTRSSRSQLSRAAMALLQSSGFPEILDANQQPVEAVNPIDPVRFNPQKEESDGLRGNEIVLQFLAFSRAAQDCPGAPWPQTVYFTFQFYRFPPETTPRLQLVKLDGTGKSSSGSLSHVLVPIDKDGSFDPGSPGFQLRYMVDPGFLKPGEQCWFIHYLAAQTLQVDVWDGDSLLLIGSAGVQMKHLLRQGRPAVQVSHELEVVATEYEQETVAMSGDMAGFGSVKPIGVHTVVKGRLHLTLANVGHECEPRARGSSSLPPSRSRVISNGASFFSGGSLLIPGGSRRFRDRERELLRGIRPRVSVFISRVTQSRSTPENLCEEALGTSHGLCWYSTHRPDPSSPAPPIGKCVVQAQKLADVDSELAAMLLTHPGAGPGPQAARGEPDAAHRRKLERMRLVRLQEAGGASDSRRISLLAQQSIRAQHSRDLQVIDAYRERTKAESITSVLSQAITTHHTLYATLGTAEFFEFALKNPHNTQHTVAIEIDSPELSIILDSQEWRYFKEATGLHTPLEEDMFHLRGSLAPQLYLRPRETAHIPFKYQNFSVGPLAPPQAPAEMSSEKDPESRALWKCSAMPTKHAKVLFRTESGRPIAVLCLTVEPQPHVVDQVFRFYHPELTFLKKAIRLPPWHTLPGAPVGTPGDDPPVHVRCSDPNVICEAQNVGPGEPRDVFLKVASGPSPEIKDFFVIIYADRWLAEPVQMWQVCLHSLQRVDVSCVAGQLTRLSLVLRGTQTVRKVRAFTSHPQELKTDPAGVFVLPPHGVQDLHVGVRPRRAGNRFVHLNLVDMDYHQLVASWLVCLSCRQPLISKAFEITMAAGDAKGASKRITYTNPYPSQRTYHLHSDRPDLLQFKESSFQVAGGETYTIGLRFLPSGSTGQEEILIYINDHEDKNEEAFCVKVLYQ", "length": 1495, "header": "tr|A0A9J7K479-1|A0A9J7K479_CRIGR Isoform 1 of Nephrocystin-4 isoform X11 OS=Cricetulus griseus OX=10029 GN=LOC100772374 PE=4 SV=1 CANONICAL=A0A9J7K479-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F924-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F924/entry", "sequence": { "sequence": "MGSMDGWHRIFTQNTIVPPHPLRARQLGKESTAFQCVLKWLDGPLIKQGILDMLSELECHLRVSLFDVTYKHFFGRTWKTVTKSSNQLSRQPPRIIFNEPFYFHTTLNHPNIVAVVEVVAEGRKRDGALQVLSCGFGILRIFGNKPESPTSAAQDKRLRLYHGTPRALLHPLLQDPIEQSKHMTLMENCSLQYTLKPHPPLEPAFHLLPENLLVSGLQLIPGLLPPHGDMGDALRKPRFQKPTTWHLDDIFFTLYPSLEKFEEELLELLISDHFREGVGLLDGGTLEVLERRLHVCVHNGLGFVHRPQVVVLVPEMDVALTRSASFSRRISASSKSSSGNQALVLRSRLRLPEMVSHPAFAIVFQLEYVFSSPSGADSSAGSSTSLSSLAGMHMVRWAVWNPELEATSGRVTLPLQGGIQHNPSRCLVYKVPSASMSSEEVKQVESGNIQFKFSLSPDIPTEHVSGPKTERCSFRKTPVSPSGTPAPEAQDLAAIQDSPVGPGLSLSQLAASPQSPAPPRSSSKPPPGSLDSPQSPQGPQLQAQESVLEGGISHLEADLSQTTSTSVLGTPAVDHLQELPFTPLHAPIVVGAQTRSSRSQLSRAAMALLQSSGFPEILDANQQPVEAVNPIDPVRFNPQKEESDGLRGNEIVLQFLAFSRAAQDCPGAPWPQTVYFTFQFYRFPPETTPRLQLVKLDGTGKSSSGSLSHVLVPIDKDGSFDPGSPGFQLRYMVDPGFLKPGEQCWFIHYLAAQTLQVDVWDGDSLLLIGSAGVQMKHLLRQGRPAVQVSHELEVVATEYEQETVAMSGDMAGFGSVKPIGVHTVVKGRLHLTLANVGHECEPRARGSSSLPPSRSRVISNGASFFSGGSLLIPGGSRRKCVVQAQKLADVDSELAAMLLTHPGAGPGPQAARGEPDAAHRRKLERMRLVRLQEAGGASDSRRISLLAQQSIRAQHSRDLQVIDAYRERTKAESITSVLSQAITTHHTLYATLGTAEFFEFALKNPHNTQHTVAIEIDSPELSIILDSQEWRYFKEATGLHTPLEEDMFHLRGSLAPQLYLRPRETAHIPFKYQNFSVGPLAPPQAPAEMSSEKDPESRALWKCSAMPTKHAKVLFRTESGRPIAVLCLTVEPQPHVVDQVFRFYHPELTFLKKAIRLPPWHTLPGAPVGTPGDDPPVHVRCSDPNVICEAQNVGPGEPRDVFLKVASGPSPEIKDFFVIIYADRWLAEPVQMWQVCLHSLQRVDVSCVAGQLTRLSLVLRGTQTVRKVRAFTSHPQELKTDPAGVFVLPPHGVQDLHVGVRPRRAGNRFVHLNLVDMDYHQLVASWLVCLSCRQPLISKAFEITMAAGDAKGASKRITYTNPYPSQRTYHLHSDRPDLLQFKESSFQVAGGETYTIGLRFLPSGSTGQEEILIYINDHEDKNEEAFCVKVLYQ", "length": 1433, "header": "tr|A0A9J7F924-1|A0A9J7K479_CRIGR Computationally mapped isoform of Nephrocystin-4 isoform X11 OS=Cricetulus griseus OX=10029 GN=LOC100772374 PE=4 SV=1 CANONICAL=A0A9J7K479-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FDB5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDB5/entry", "sequence": { "sequence": "MGSMDGWHRIFTQNTIVPPHPLRARQLGKESTAFQCVLKWLDGPLIKQGILDMLSELECHLRVSLFDVTYKHFFGRTWKTVTKSSNQLSRQPPRIIFNEPFYFHTTLNHPNIVAVVEVVAEGRKRDGALQVLSCGFGILRIFGNKPESPTSAAQDKRLRLYHGTPRALLHPLLQDPIEQSKHMTLMENCSLQYTLKPHPPLEPAFHLLPENLLVSGLQLIPGLLPPHGDMGDALRKPRFQKPTTWHLDDIFFTLYPSLEKFEEELLELLISDHFREGVGLLDGGTLEVLERRLHVCVHNGLGFVHRPQVVVLVPEMDVALTRSASFSRRISASSKSSSGNQALVLRSRLRLPEMVSHPAFAIVFQLEYVFSSPSGADSSAGSSTSLSSLAGMHMVRWAVWNPELEATSGRVTLPLQGGIQHNPSRCLVYKVPSASMSSEEVKQVESGNIQFKFSLSPDIPTEHVSGPKTERCSFRKTPVSPSGTPAPEAQDLAAIQDSPVGPGLSLSQLAASPQSPAPPRSSSKPPPGSLDSPQSPQGPQLQAQESVLEGGISHLEADLSQTTSTSVLGTPAVDHLQELPFTPLHAPIVVGAQTRSSRSQLSRAAMALLQSSGFPEILDANQQPVEAVNPIDPVRFNPQKEESDGLRGNEIVLQFLAFSRAAQDCPGAPWPQTVYFTFQFYRFPPETTPRLQLVKLDGTGKSSSGSLSHVLVPIDKDGSFDPGSPGFQLRYMVDPGFLKPGEQCWFIHYLAAQTLQVDVWDGDSLLLIGSAGVQMKHLLRQGRPAVQVSHELEVVATEYEQETVAMSGDMAGFGSVKPIGVHTVVKGRLHLTLANVGHECEPRARGSSSLPPSRSRVISNGASFFSGGSLLIPGGSRLGDHLPQLPPSRGHRWCVPCCLLCVAGSASAHGKCVVQAQKLADVDSELAAMLLTHPGAGPGPQAARGEPDAAHRRKLERMRLVRLQEAGGASDSRRISLLAQQSIRAQHSRDLQVIDAYRERTKAESITSVLSQAITTHHTLYATLGTAEFFEFALKNPHNTQHTVAIEIDSPELSIILDSQEWRYFKEATGLHTPLEEDMFHLRGSLAPQLYLRPRETAHIPFKYQNFSVGPLAPPQAPAEMSSEKDPESRALWKCSAMPTKHAKVLFRTESGRPIAVLCLTVEPQPHVVDQVFRFYHPELTFLKKAIRLPPWHTLPGAPVGTPGDDPPVHVRCSDPNVICEAQNVGPGEPRDVFLKVASGPSPEIKDFFVIIYADRWLAEPVQMWQVCLHSLQRVDVSCVAGQLTRLSLVLRGTQTVRKVRAFTSHPQELKTDPAGVFVLPPHGVQDLHVGVRPRRAGNRFVHLNLVDMDYHQLVASWLVCLSCRQPLISKAFEITMAAGDAKGASKRITYTNPYPSQRTYHLHSDRPDLLQFKESSFQVAGGETYTIGLRFLPSGSTGQEEILIYINDHEDKNEEAFCVKVLYQ", "length": 1465, "header": "tr|A0A9J7FDB5-1|A0A9J7K479_CRIGR Computationally mapped isoform of Nephrocystin-4 isoform X11 OS=Cricetulus griseus OX=10029 GN=LOC100772374 PE=4 SV=1 CANONICAL=A0A9J7K479-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FDZ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDZ6/entry", "sequence": { "sequence": "MGSMDGWHRIFTQNTIVPPHPLRARQLGKESTAFQCVLKWLDGPLIKQGILDMLSELECHLRVSLFDVTYKHFFGRTWKTVTKSSNQLSRQPPRIIFNEPFYFHTTLNHPNIVAVVEVVAEGRKRDGALQVLSCGFGILRIFGNKPESPTSAAQDKRLRLYHGTPRALLHPLLQDPIEQSKHMTLMENCSLQYTLKPHPPLEPAFHLLPENLLVSGLQLIPGLLPPHGDMGDALRKPRFQKPTTWHLDDIFFTLYPSLEKFEEELLELLISDHFREGVGLLDGGTLEVLERRLHVCVHNGLGFVHRPQVVVLVPEMDVALTRSASFSRRISASSKSSSGNQALVLRSRLRLPEMVSHPAFAIVFQLEYVFSSPSGADSSAGSSTSLSSLAGMHMVRWAVWNPELEATSGRVTLPLQGGIQHNPSRCLVYKVPSASMSSEEVKQVESGNIQFKFSLSPDIPTEHVSGPKTERCSFRKTPVSPSGTPAPEAQDLAAIQDSPVGPGLSLSQLAASPQSPAPPRSSSKPPPGSLDSPQSPQGPQLQAESVLEGGISHLEADLSQTTSTSVLGTPAVDHLQELPFTPLHAPIVVGAQTRSSRSQLSRAAMALLQSSGFPEILDANQQPVEAVNPIDPVRFNPQKEESDGLRGNEIVLQFLAFSRAAQDCPGAPWPQTVYFTFQFYRFPPETTPRLQLVKLDGTGKSSSGSLSHVLVPIDKDGSFDPGSPGFQLRYMVDPGFLKPGEQCWFIHYLAAQTLQVDVWDGDSLLLIGSAGVQMKHLLRQGRPAVQVSHELEVVATEYEQETVAMSGDMAGFGSVKPIGVHTVVKGRLHLTLANVGHECEPRARGSSSLPPSRSRVISNGASFFSGGSLLIPGGSRRKCVVQAQKLADVDSELAAMLLTHPGAGPGPQAARGEPDAAHRRKLERMRLVRLQEAGGASDSRRISLLAQQSIRAQHSRDLQVIDAYRERTKAESITSVLSQAITTHHTLYATLGTAEFFEFALKNPHNTQHTVAIEIDSPELSIILDSQEWRYFKEATGLHTPLEEDMFHLRGSLAPQLYLRPRETAHIPFKYQNFSVGPLAPPQAPAEMSSEKDPESRALWKCSAMPTKHAKVLFRTESGRPIAVLCLTVEPQPHVVDQVFRFYHPELTFLKKAIRLPPWHTLPGAPVGTPGDDPPVHVRCSDPNVICEAQNVGPGEPRDVFLKVASGPSPEIKDFFVIIYADRWLAEPVQMWQVCLHSLQRVDVSCVAGQLTRLSLVLRGTQTVRKVRAFTSHPQELKTDPAGVFVLPPHGVQDLHVGVRPRRAGNRFVHLNLVDMDYHQLVASWLVCLSCRQPLISKAFEITMAAGDAKGASKRITYTNPYPSQRTYHLHSDRPDLLQFKESSFQVAGGETYTIGLRFLPSGSTGQEEILIYINDHEDKNEEAFCVKVLYQ", "length": 1432, "header": "tr|A0A9J7FDZ6-1|A0A9J7K479_CRIGR Computationally mapped isoform of Nephrocystin-4 isoform X11 OS=Cricetulus griseus OX=10029 GN=LOC100772374 PE=4 SV=1 CANONICAL=A0A9J7K479-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GMH2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GMH2/entry", "sequence": { "sequence": "MGSMDGWHRIFTQNTIVPPHPLRARQLGKESTAFQCVLKWLDGPLIKQGILDMLSELECHLRVSLFDVTYKHFFGRTWKTVTKSSNQLSRQPPRIIFNEPFYFHTTLNHPNIVAVVEVVAEGRKRDGALQVLSCGFGILRIFGNKPESPTSAAQDKRLRLYHGTPRALLHPLLQDPIEQSKHMTLMENCSLQYTLKPHPPLEPAFHLLPENLLVSGLQLIPGLLPPHGDMGDALRKPRFQKPTTWHLDDIFFTLYPSLEKFEEELLELLISDHFREGVGLLDGGTLEVLERRLHVCVHNGLGFVHRPQVVVLVPEMDVALTRSASFSRRISASSKSSSGNQALVLRSRLRLPEMVSHPAFAIVFQLEYVFSSPSGADSSAGSSTSLSSLAGMHMVRWAVWNPELEATSGRVTLPLQGGIQHNPSRCLVYKVPSASMSSEEVKQVESGNIQFKFSLSPDIPTEHVSGPKTERCSFRKTPVSPSGTPAPEAQDLAAIQDSPVGPGLSLSQLAASPQSPAPPRSSSKPPPGSLDSPQSPQGPQLQAQESVLEGGISHLEADLSQTTSTSVLGTPAVDHLQELPFTPLHAPIVVGAQTRSSRSQLSRAAMALLQSSGFPEILDANQQPVEAVNPIDPVRFNPQKEESDGLRGNEIVLQFLAFSRAAQDCPGAPWPQTVYFTFQFYRFPPETTPRLQLVKLDGTGKSSSGSLSHVLVPIDKDGSFDPGSPGFQLRYMVDPGFLKPGEQCWFIHYLAAQTLQVDVWDGDSLLLIGSAGVQMKHLLRQGRPAVQVSHELEVVATEYEQETVAMSGDMAGFGSVKPIGVHTVVKGRLHLTLANVGHECEPRARGSSSLPPSRSRVISNGASFFSGGSLLIPGGSRRFRDRERELLRGIRPRVSVFISRVTQSRSTPENLCEEALGTSHGLCWYSTHRPDPSSPAPPIGKCVVQAQKLADVDSELAAMLLTHPGAGPGPQAARGEPDAAHRRKLERMRLVRLQEAGGASDSRRISLLAQQSIRAQHSRDLQVIDAYRERTKAESITSVLSQAITTHHTLYATLGTAEFFEFALKNPHNTQHTVAIEIDSPELSIILDSQEWRYFKEATGLHTPLEEDMFHLRGSLAPQLYLRPRETAHIPFKYQNFSVGPLAPPQAPAEMSSEKDPESRALWKCSAMPTKHAKVLFRTESGRPIAVLCLTVEPQPHVVDQVFRFYHPELTFLKKAIRLPPWHTLPGAPVGTPGDDPPVHVRCSDPNVICEAQNVGPGEPRDVFLKVASGPSPEIKDFFVIIYALG", "length": 1286, "header": "tr|A0A9J7GMH2-1|A0A9J7GMH2_CRIGR Computationally mapped isoform of Nephrocystin-4 isoform X18 OS=Cricetulus griseus OX=10029 GN=LOC100772374 PE=4 SV=1 CANONICAL=A0A9J7K479-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GMU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GMU6/entry", "sequence": { "sequence": "MGSMDGWHRIFTQNTIVPPHPLRARQLGKESTAFQCVLKWLDGPLIKQGILDMLSELECHLRVSLFDVTYKHFFGRTWKTVTKSSNQLSRQPPRIIFNEPFYFHTTLNHPNIVAVVEVVAEGRKRDGALQVLSCGFGILRIFGNKPESPTSAAQDKRLRLYHGTPRALLHPLLQDPIEQSKHMTLMENCSLQYTLKPHPPLEPAFHLLPENLLVSGLQLIPGLLPPHGDMGDALRKPRFQKPTTWHLDDIFFTLYPSLEKFEEELLELLISDHFREGVGLLDGGTLEVLERRLHVCVHNGLGFVHRPQVVVLVPEMDVALTRSASFSRRISASSKSSSGNQALVLRSRLRLPEMVSHPAFAIVFQLEYVFSSPSGADSSAGSSTSLSSLAGMHMVRWAVWNPELEATSGRVTLPLQGGIQHNPSRCLVYKVPSASMSSEEVKQVESGNIQFKFSLSPDIPTEHVSGPKTERCSFRKTPVSPSGTPAPEAQDLAAIQDSPVGPGLSLSQLAASPQSPAPPRSSSKPPPGSLDSPQSPQGPQLQAQESVLEGGISHLEADLSQTTSTSVLGTPAVDHLQELPFTPLHAPIVVGAQTRSSRSQLSRAAMALLQSSGFPEILDANQQPVEAVNPIDPVRFNPQKEESDGLRGNEIVLQFLAFSRAAQDCPGAPWPQTVYFTFQFYRFPPETTPRLQLVKLDGTGKSSSGSLSHVLVPIDKDGSFDPGSPGFQLRYMVDPGFLKPGEQCWFIHYLAAQTLQVDVWDGDSLLLIGSAGVQMKHLLRQGRPAVQVSHELEVVATEYEQETVAMSGDMAGFGSVKPIGVHTVVKGRLHLTLANVGHECEPRARGSSSLPPSRSRVISNGASFFSGGSLLIPGGSRRFRDRERELLRGIRPRVSVFISRVTQSRSTPENLCEEALGTSHGLCWYSTHRPDPSSPAPPIGKCVVQAQKLADVDSELAAMLLTHPGAGPGPQAARGEPDAAHRRKLERMRLVRLQEAGGASDSRRISLLAQQSIRAQHSRDLQVIDAYRERTKAESITSVLSQAITTHHTLYATLGTAEFFEFALKNPHNTQHTVAIEIDSPELSIILDSQEWRYFKEATGLHTPLEEDMFHLRGSLAPQLYLRPRETAHIPFKYQNFSVGPLAPPQAPAEMSSEKDPESRALWKCSAMPTKHAKVLFRTESGRPIAVLCLTVEPQPHVVDQVFRFYHPELTFLKKAIRLPPWHTLPGAPVGTPGDDPPVHVRCSDPNVICEAQNVGPGEPRDVFLKVASGPSPEIKDFFVIIYAGSALNPEVIWSAAPPSIDSCLPPSFVFIYRA", "length": 1315, "header": "tr|A0A9J7GMU6-1|A0A9J7GMU6_CRIGR Computationally mapped isoform of Nephrocystin-4 isoform X17 OS=Cricetulus griseus OX=10029 GN=LOC100772374 PE=4 SV=1 CANONICAL=A0A9J7K479-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GNY2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GNY2/entry", "sequence": { "sequence": "MRLRLYHGTPRALLHPLLQDPIEQSKHMTLMENCSLQYTLKPHPPLEPAFHLLPENLLVSGLQLIPGLLPPHGDMGDALRKPRFQKPTTWHLDDIFFTLYPSLEKFEEELLELLISDHFREGVGLLDGGTLEVLERRLHVCVHNGLGFVHRPQVVVLVPEMDVALTRSASFSRRISASSKSSSGNQALVLRSRLRLPEMVSHPAFAIVFQLEYVFSSPSGADSSAGSSTSLSSLAGMHMVRWAVWNPELEATSGRVTLPLQGGIQHNPSRCLVYKVPSASMSSEEVKQVESGNIQFKFSLSPDIPTEHVSGPKTERCSFRKTPVSPSGTPAPEAQDLAAIQDSPVGPGLSLSQLAASPQSPAPPRSSSKPPPGSLDSPQSPQGPQLQAQESVLEGGISHLEADLSQTTSTSVLGTPAVDHLQELPFTPLHAPIVVGAQTRSSRSQLSRAAMALLQSSGFPEILDANQQPVEAVNPIDPVRFNPQKEESDGLRGNEIVLQFLAFSRAAQDCPGAPWPQTVYFTFQFYRFPPETTPRLQLVKLDGTGKSSSGSLSHVLVPIDKDGSFDPGSPGFQLRYMVDPGFLKPGEQCWFIHYLAAQTLQVDVWDGDSLLLIGSAGVQMKHLLRQGRPAVQVSHELEVVATEYEQETVAMSGDMAGFGSVKPIGVHTVVKGRLHLTLANVGHECEPRARGSSSLPPSRSRVISNGASFFSGGSLLIPGGSRRFRDRERELLRGIRPRVSVFISRVTQSRSTPENLCEEALGTSHGLCWYSTHRPDPSSPAPPIGKCVVQAQKLADVDSELAAMLLTHPGAGPGPQAARGEPDAAHRRKLERMRLVRLQEAGGASDSRRISLLAQQSIRAQHSRDLQVIDAYRERTKAESITSVLSQAITTHHTLYATLGTAEFFEFALKNPHNTQHTVAIEIDSPELSIILDSQEWRYFKEATGLHTPLEEDMFHLRGSLAPQLYLRPRETAHIPFKYQNFSVGPLAPPQAPAEMSSEKDPESRALWKCSAMPTKHAKVLFRTESGRPIAVLCLTVEPQPHVVDQVFRFYHPELTFLKKAIRLPPWHTLPGAPVGTPGDDPPVHVRCSDPNVICEAQNVGPGEPRDVFLKVASGPSPEIKDFFVIIYADRWLAEPVQMWQVCLHSLQRVDVSCVAGQLTRLSLVLRGTQTVRKVRAFTSHPQELKTDPAGVFVLPPHGVQDLHVGVRPRRAGNRFVHLNLVDMDYHQLVASWLVCLSCRQPLISKAFEITMAAGDAKGASKRITYTNPYPSQRTYHLHSDRPDLLQFKESSFQVAGGETYTIGLRFLPSGSTGQEEILIYINDHEDKNEEAFCVKVLYQ", "length": 1340, "header": "tr|A0A9J7GNY2-1|A0A9J7GNY2_CRIGR Computationally mapped isoform of Nephrocystin-4 isoform X16 OS=Cricetulus griseus OX=10029 GN=LOC100772374 PE=4 SV=1 CANONICAL=A0A9J7K479-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GSL5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GSL5/entry", "sequence": { "sequence": "MGSMDGWHRIFTQNTIVPPHPLRARQLGKESTAFQCVLKWLDGPLIKQGILDMLSELECHLRVSLFDVTYKHFFGRTWKTVTKSSNQLSRQPPRIIFNEPFYFHTTLNHPNIVAVVEVVAEGRKRDGALQVLSCGFGILRIFGNKPESPTSAAQDKRLRLYHGTPRALLHPLLQDPIEQSKHMTLMENCSLQYTLKPHPPLEPAFHLLPENLLVSGLQLIPGLLPPHGDMGDALRKPRFQKPTTWHLDDIFFTLYPSLEKFEEELLELLISDHFREGVGLLDGGTLEVLERRLHVCVHNGLGFVHRPQVVVLVPEMDVALTRSASFSRRISASSKSSSGNQALVLRSRLRLPEMVSHPAFAIVFQLEYVFSSPSGADSSAGSSTSLSSLAGMHMVRWAVWNPELEATSGRVTLPLQGGIQHNPSRCLVYKVPSASMSSEEVKQVESGNIQFKFSLSPDIPTEHVSGPKTERCSFRKTPVSPSGTPAPEAQDLAAIQDSPVGPGLSLSQLAASPQSPAPPRSSSKPPPGSLDSPQSPQGPQLQAQESVLEGGISHLEADLSQTTSTSVLGTPAVDHLQELPFTPLHAPIVVGAQTRSSRSQLSRAAMALLQSSGFPEILDANQQPVEAVNPIDPVRFNPQKEESDGLRGNEIVLQFLAFSRAAQDCPGAPWPQTVYFTFQFYRFPPETTPRLQLVKLDGTGKSSSGSLSHVLVPIDKDGSFDPGSPGFQLRYMVDPGFLKPGEQCWFIHYLAAQTLQVDVWDGDSLLLIGSAGVQMKHLLRQGRPAVQVSHELEVVATEYEQETVAMSGDMAGFGSVKPIGVHTVVKGRLHLTLANVGHECEPRARGSSSLPPSRSRVISNGASFFSGGSLLIPGGSRRFRDRERELLRGIRPRVSVFISRVTQSRSTPENLCEEALGTSHGLCWYSTHRPDPSSPAPPIGKCVVQAQKLADVDSELAAMLLTHPGAGPGPQAARGEPDAAHRRKLERMRLVRLQEAGGASDSRRISLLAQQSIRAQHSRDLQVIDAYRERTKAESITSVLSQAITTHHTLYATLGTAEFFEFALKNPHNTQHTVAIEIDSPELSIILDSQEWRYFKEATGLHTPLEEDMFHLRGSLAPQLYLRPRETAHIPFKYQNFSVGPLAPPQAPAEMSSEKDPESRALWKCSAMPTKHAKHLLLP", "length": 1179, "header": "tr|A0A9J7GSL5-1|A0A9J7GSL5_CRIGR Computationally mapped isoform of Nephrocystin-4 isoform X19 OS=Cricetulus griseus OX=10029 GN=LOC100772374 PE=4 SV=1 CANONICAL=A0A9J7K479-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K2R2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2R2/entry", "sequence": { "sequence": "MGSMDGWHRIFTQNTIVPPHPLRARQLGKESTAFQCVLKWLDGPLIKQGILDMLSELECHLRVSLFDVTYKHFFGRTWKTVTKSSNQLSRQPPRIIFNEPFYFHTTLNHPNIVAVVEVVAEGRKRDGALQVLSCGFGILRIFGNKPESPTSAAQDKRLRLYHGTPRALLHPLLQDPIEQSKHMTLMENCSLQYTLKPHPPLEPAFHLLPENLLVSGLQLIPGLLPPHGDMGDALRKPRFQKPTTWHLDDIFFTLYPSLEKFEEELLELLISDHFREGVGLLDGGTLEVLERRLHVCVHNGLGFVHRPQVVVLVPEMDVALTRSASFSRRISASSKSSSGNQALVLRSRLRLPEMVSHPAFAIVFQLEYVFSSPSGADSSAGSSTSLSSLAGMHMVRWAVWNPELEATSGRVTLPLQGGIQHNPSRCLVYKVPSASMSSEEVKQVESGNIQFKFSLSPDIPTEHVSGPKTERCSFRKTPVSPSGTPAPEAQDLAAIQDSPVGPGLSLSQLAASPQSPAPPRSSSKPPPGSLDSPQSPQGPQLQAESVLEGGISHLEADLSQTTSTSVLGTPAVDHLQELPFTPLHAPIVVGAQTRSSRSQLSRAAMALLQSSGFPEILDANQQPVEAVNPIDPVRFNPQKEESDGLRGNEIVLQFLAFSRAAQDCPGAPWPQTVYFTFQFYRFPPETTPRLQLVKLDGTGKSSSGSLSHVLVPIDKDGSFDPGSPGFQLRYMVDPGFLKPGEQCWFIHYLAAQTLQVDVWDGDSLLLIGSAGVQMKHLLRQGRPAVQVSHELEVVATEYEQETVAMSGDMAGFGSVKPIGVHTVVKGRLHLTLANVGHECEPRARGSSSLPPSRSRVISNGASFFSGGSLLIPGGSRRFRDRERELLRGIRPRVSVFISRVTQSRSTPENLCEEALGTSHGLCWYSTHRPDPSSPAPPIGKCVVQAQKLADVDSELAAMLLTHPGAGPGPQAARGEPDAAHRRKLERMRLVRLQEAGGASDSRRISLLAQQSIRAQHSRDLQVIDAYRERTKAESITSVLSQAITTHHTLYATLGTAEFFEFALKNPHNTQHTVAIEIDSPELSIILDSQEWRYFKEATGLHTPLEEDMFHLRGSLAPQLYLRPRETAHIPFKYQNFSVGPLAPPQAPAEMSSEKDPESRALWKCSAMPTKHAKVLFRTESGRPIAVLCLTVEPQPHVVDQVFRFYHPELTFLKKAIRLPPWHTLPGAPVGTPGDDPPVHVRCSDPNVICEAQNVGPGEPRDVFLKVASGPSPEIKDFFVIIYADRWLAEPVQMWQVCLHSLQRVDVSCVAGQLTRLSLVLRGTQTVRKVRAFTSHPQELKTDPAGVFVLPPHGVQDLHVGVRPRRAGNRFVHLNLVDMDYHQLVASWLVCLSCRQPLISKAFEITMAAGDAKGASKRITYTNPYPSQRTYHLHSDRPDLLQFKESSFQVAGGETYTIGLRFLPSGSTGQEEILIYINDHEDKNEEAFCVKVLYQ", "length": 1494, "header": "tr|A0A9J7K2R2-1|A0A9J7K2R2_CRIGR Computationally mapped isoform of Nephrocystin-4 isoform X12 OS=Cricetulus griseus OX=10029 GN=LOC100772374 PE=4 SV=1 CANONICAL=A0A9J7K479-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K479-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K479/entry", "sequence": { "sequence": "MGSMDGWHRIFTQNTIVPPHPLRARQLGKESTAFQCVLKWLDGPLIKQGILDMLSELECHLRVSLFDVTYKHFFGRTWKTVTKSSNQLSRQPPRIIFNEPFYFHTTLNHPNIVAVVEVVAEGRKRDGALQVLSCGFGILRIFGNKPESPTSAAQDKRLRLYHGTPRALLHPLLQDPIEQSKHMTLMENCSLQYTLKPHPPLEPAFHLLPENLLVSGLQLIPGLLPPHGDMGDALRKPRFQKPTTWHLDDIFFTLYPSLEKFEEELLELLISDHFREGVGLLDGGTLEVLERRLHVCVHNGLGFVHRPQVVVLVPEMDVALTRSASFSRRISASSKSSSGNQALVLRSRLRLPEMVSHPAFAIVFQLEYVFSSPSGADSSAGSSTSLSSLAGMHMVRWAVWNPELEATSGRVTLPLQGGIQHNPSRCLVYKVPSASMSSEEVKQVESGNIQFKFSLSPDIPTEHVSGPKTERCSFRKTPVSPSGTPAPEAQDLAAIQDSPVGPGLSLSQLAASPQSPAPPRSSSKPPPGSLDSPQSPQGPQLQAQESVLEGGISHLEADLSQTTSTSVLGTPAVDHLQELPFTPLHAPIVVGAQTRSSRSQLSRAAMALLQSSGFPEILDANQQPVEAVNPIDPVRFNPQKEESDGLRGNEIVLQFLAFSRAAQDCPGAPWPQTVYFTFQFYRFPPETTPRLQLVKLDGTGKSSSGSLSHVLVPIDKDGSFDPGSPGFQLRYMVDPGFLKPGEQCWFIHYLAAQTLQVDVWDGDSLLLIGSAGVQMKHLLRQGRPAVQVSHELEVVATEYEQETVAMSGDMAGFGSVKPIGVHTVVKGRLHLTLANVGHECEPRARGSSSLPPSRSRVISNGASFFSGGSLLIPGGSRRFRDRERELLRGIRPRVSVFISRVTQSRSTPENLCEEALGTSHGLCWYSTHRPDPSSPAPPIGKCVVQAQKLADVDSELAAMLLTHPGAGPGPQAARGEPDAAHRRKLERMRLVRLQEAGGASDSRRISLLAQQSIRAQHSRDLQVIDAYRERTKAESITSVLSQAITTHHTLYATLGTAEFFEFALKNPHNTQHTVAIEIDSPELSIILDSQEWRYFKEATGLHTPLEEDMFHLRGSLAPQLYLRPRETAHIPFKYQNFSVGPLAPPQAPAEMSSEKDPESRALWKCSAMPTKHAKVLFRTESGRPIAVLCLTVEPQPHVVDQVFRFYHPELTFLKKAIRLPPWHTLPGAPVGTPGDDPPVHVRCSDPNVICEAQNVGPGEPRDVFLKVASGPSPEIKDFFVIIYADRWLAEPVQMWQVCLHSLQRVDVSCVAGQLTRLSLVLRGTQTVRKVRAFTSHPQELKTDPAGVFVLPPHGVQDLHVGVRPRRAGNRFVHLNLVDMDYHQLVASWLVCLSCRQPLISKAFEITMAAGDAKGASKRITYTNPYPSQRTYHLHSDRPDLLQFKESSFQVAGGETYTIGLRFLPSGSTGQEEILIYINDHEDKNEEAFCVKVLYQ", "length": 1495, "header": "tr|A0A9J7K479-1|A0A9J7K479_CRIGR Isoform 1 of Nephrocystin-4 isoform X11 OS=Cricetulus griseus OX=10029 GN=LOC100772374 PE=4 SV=1 CANONICAL=A0A9J7K479-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K4G2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4G2/entry", "sequence": { "sequence": "MGSMDGWHRIFTQNTIVPPHPLRARQLGKESTAFQCVLKWLDGPLIKQGILDMLSELECHLRVSLFDVTYKHFFGRTWKTVTKSSNQLSRQPPRIIFNEPFYFHTTLNHPNIVAVVEVVAEGRKRDGALQVLSCGFGILRIFGNKPESPTSAAQDKRLRLYHGTPRALLHPLLQDPIEQSKHMTLMENCSLQYTLKPHPPLEPAFHLLPENLLVSGLQLIPGLLPPHGDMGDALRKPRFQKPTTWHLDDIFFTLYPSLEKFEEELLELLISDHFREGVGLLDGGTLEVLERRLHVCVHNGLGFVHRPQVVVLVPEMDVALTRSASFSRRISASSKSSSGNQALVLRSRLRLPEMVSHPAFAIVFQLEYVFSSPSGADSSAGSSTSLSSLAGMHMVRWAVWNPELEATSGRVTLPLQGGIQHNPSRCLVYKVPSASMSSEEVKQVESGNIQFKFSLSPDIPTEHVSGPKTERCSFRKTPVSPSGTPAPEAQDLAAIQDSPVGPGLSLSQLAASPQSPAPPRSSSKPPPGSLDSPQSPQGPQLQAQESVLEGGISHLEADLSQTTSTSVLGTPAVDHLQELPFTPLHAPIVVGAQTRSSRSQLSRAAMALLQSSGFPEILDANQQPVEAVNPIDPVRFNPQKEESDGLRGNEIVLQFLAFSRAAQDCPGAPWPQTVYFTFQFYRFPPETTPRLQLVKLDGTGKSSSGSLSHVLVPIDKDGSFDPGSPGFQLRYMVDPGFLKPGEQCWFIHYLAAQTLQVDVWDGDSLLLIGSAGVQMKHLLRQGRPAVQVSHELEVVATEYEQETVAMSGDMAGFGSVKPIGVHTVVKGRLHLTLANVGHECEPRARGSSSLPPSRSRVISNGASFFSGGSLLIPGGSRRFRDRERELLRGIRPRVSVFISRVTQSRSTPENLCEEALGTSHGLCWYSTHRPDPSSPAPPIGKCVVQAQKLADVDSELAAMLLTHPGAGPGPQAARGEPDAAHRRKLERMRLVRLQEAGGASDSRRISLLAQQSIRAQHSRDLQVIDAYRERTKAESITSVLSQAITTHHTLYATLGTAEFFEFALKNPHNTQHTVAIEIDSPELSIILDSQEWRYFKEATGLHTPLEEDMFHLRGSLAPQLYLRPRETAHIPFKYQNFSVGPLAPPQV", "length": 1147, "header": "tr|A0A9J7K4G2-1|A0A9J7K4G2_CRIGR Computationally mapped isoform of Nephrocystin-4 isoform X20 OS=Cricetulus griseus OX=10029 GN=LOC100772374 PE=4 SV=1 CANONICAL=A0A9J7K479-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1232, "start_aa": "Thr", "end_pos": 1232, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1232", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 150, "start_aa": "Thr", "end_pos": 150, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr150", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 484, "start_aa": "Thr", "end_pos": 484, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr484", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F924", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F924" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F924", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F924" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100772374", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772374", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "negative regulation of canonical Wnt signaling pathway", "id": "GO:0090090", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090090", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K479", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K479" } ], "pmid": "" }, { "name": "protein localization to ciliary transition zone", "id": "GO:1904491", "url": 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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035296978", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035296978" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K4A0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4A0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC103162656", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4A0", "locus": {} } ], "crossref": [ { "id": "A0A9J7K4A0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K4A0", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd09273", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09273", "database": "CDD", "categories": [ "Protein 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"MKIPTPTTLRQVREFLGTAGFCRLWIPGFATLAAPLYPLTKEKFSFTWTEEHQRAFDKIKTALLTAPALTLPDLTKPFTLYVDERAGIARGVLTQALGPWKRPVAYLSKKLDPIASGWPSCLKAIAAVALLVKDADKLTVDQHMTVIAPHALESIVRQLPDCWMTNARMTHYQSLLLNDRITFAPPAILNPATLLPEAKDSTPVHRCTDVLAEETGTRKDLTDQPWPGVPNWYIDGSSFVVEGKRRAGAVVVDGKQVIWASSLPEGTSAQKAELLALTQALRLAEGKAINIYTDSRYAFATAHIHGAIYRQRGLLTSAGRDVKNKEEILALLEAIHLPQKLAIVHCLGHQKGADPVTKGNQMADLTAKQAAQGAVVLAEETGTPPEPPQASVIHPSFVYPYKDYDLIKDMTRAGKARMFSFGGLAKTKDGRIILPSKEGQDYVRRIHQLTHLGNEKLKQLIKGSKYYVLGLNTIIKEVIESCQACTLTNAARPFKEPGKRMRGDWPGIYWKVDFTEIKPGKYGNKYLLVFIDTFSGWVEAFPTKSETAQMVTKKILEEILPRFGIPKALEVVKTQIWDQIKEAYTPGTTEVPHRFQVGDSVLVRRHRAGTLEPRWKGPHLVLLTNPTAVKVDRIAAWIHASHIKKAPSQNENNPENNWTVAASDNPLKLRLRRSPNLGE", "length": 679, "header": "tr|A0A9J7K4A0-1|A0A9J7K4A0_CRIGR Isoform 1 of Protein NYNRIN-like isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC103162656 PE=4 SV=1 CANONICAL=A0A9J7K4A0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FA24-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA24/entry", "sequence": { "sequence": "MSKVQEDTERMPLEPVFLHFKRFKVAISQAIKRPFPFLAFLRDTELISDKMYKDFQDSCTNLVPVEQVVYRALEELEKRLDEVVLRVLFSEENVRAYPDLEDIITNLQNVSQNRLCSQGSDRGDPNPPLNFEQVLGLPENELSEDPLETVQINQVRRDTTADNTDELERDQATPDAEPEESCVLEVQLSNSDAPMEPHSPLLWNEETISIEDSDDGNNHSEESTSGICKPRAELRSQGTQVYPYSMHMDIKQENSSLVLDGEETQASTSHNQASEAMDLSSEDSQDGISYLEESTSGICKPRAELLIQGTPIYPCSVHLVDIKQKNSSFVLDDEETEASTIHNDASEVIDLSSEDSDDGNNHSEESTSGICKPRAELLIQGTPIYPCSVQLVDIMQENHLSETNSSFVSDSELSEEASTSYNEGSEVIDFSGEDTDDGISCSEESTSGICKPSPRNPRQHNVDFSSPELPVTCGTAKGTLYKKKFEQGTGEKSILSETGEWLTLREFEIKGRRGNSKKWKQSIRSNGRTLKELIEDGYLPCLPRKRRKNWKFNNLGVTVGSQFETTFERTLSINNTGEQPQSRSNHIVLLT", "length": 591, "header": "tr|A0A9J7FA24-1|A0A9J7K4A0_CRIGR Computationally mapped isoform of Protein NYNRIN-like isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC103162656 PE=4 SV=1 CANONICAL=A0A9J7K4A0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GQV0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GQV0/entry", "sequence": { "sequence": "MSKVQEDTERMPLEPVFLHFKRFKVAISQAIKRPFPFLAFLRDTELISDKMYKDFQDSCTNLVPVEQVVYRALEELEKRLDEVVLRVLFSEENVRAYPDLEDIITNLQNVSQNRLCSQGSDRGDPNPPLNFEQVLGLPENELSEDPLETVQINQVRRDTTADNTDELERDQATPDAEPEESCVLEVQLSNSDAPMEPHSPLLWNEETISIEDSDDGNNHSEESTSGICKPRAELRSQGTQVYPYSMHMDIKQENSSLVLDGEETQASTSHNQASEAMDLSSEDSQDGISYLEESTSGICKPRAELLIQGTPIYPCSVHLVDIKQKNSSFVLDDEETEASTIHNDASEVIDLSSEDSDDGNNHSEESTSGICKPRAELLIQGTPIYPCSVQLVDIMQENHLSETNSSFVSDSELSEEASTSYNEGSEVIDFSGEDTDDGISCSEESTSGICKPSPRNPRQHNVDFSSPELPVTCGTAKGTLYKKKFEQGTGEKSILSETGEWLTLREFEIKGRRGNSKKWKQSIRSNGRTLKELIEDGYLPCLPRKRRKKENPKSEEQCSQDLSQNWKFNNLGVTVGSQFETTFERTLSINNTGEQPQSRSNHIVLLT", "length": 607, "header": "tr|A0A9J7GQV0-1|A0A9J7GQV0_CRIGR Computationally mapped isoform of Nuclear autoantigen Sp-100-like isoform X5 OS=Cricetulus griseus OX=10029 GN=LOC103162656 PE=4 SV=1 CANONICAL=A0A9J7K4A0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GRR9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GRR9/entry", "sequence": { "sequence": "MSKVQEDTERMPLEPVFLHFKRFKVAISQAIKRPFPFLAFLRDTELISDKMYKDFQDSCTNLVPVEQVVYRALEELEKRLDEVVLRVLFSEENVRAYPDLEDIITNLQNVSQNRLCSQGSDRGDPNPPLNFEQVLGLPENELSEDPLETVQINQVRRDTTADNTDELERDQATPDAEPEESCVLEVQLSNSDAPMEPHSPLLWNEETISIEDSDDGNNHSEESTSGICKPRAELRSQGTQVYPYSMHMDIKQENSSLVLDGEETQASTSHNQASEAMDLSSEDSQDGISYLEESTSGICKPRAELLIQGTPIYPCSVHLVDIKQKNSSFVLDDEETEASTIHNDASEVIDLSSEDSDDGNNHSEESTSGICKPRAELLIQGTPIYPCSVQLVDIMQENHLSETNSSFVSDSELSEEASTSYNEGSEVIDFSGEDTDDGISCSEESTSGICKPSPRNPRQHNVDFSSPELPVTCGTAKGTLYKKKFEQGTGEKSILSETGEWLTLREFEIKGRRGNSKKWKQSIRSNGRTLKELIEDGYLPCLPRKRRKALEVVKTQIWDQIKEAYTPGTTEVPHRFQVGDSVLVRRHRAGTLEPRWKGPHLVLLTNPTAVKVDRIAAWIHASHIKKAPSQNENNPENNWTVAASDNPLKLRLRRSPNLGE", "length": 660, "header": "tr|A0A9J7GRR9-1|A0A9J7GRR9_CRIGR Computationally mapped isoform of Nuclear autoantigen Sp-100-like isoform X4 OS=Cricetulus griseus OX=10029 GN=LOC103162656 PE=4 SV=1 CANONICAL=A0A9J7K4A0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K4A0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4A0/entry", "sequence": { "sequence": "MKIPTPTTLRQVREFLGTAGFCRLWIPGFATLAAPLYPLTKEKFSFTWTEEHQRAFDKIKTALLTAPALTLPDLTKPFTLYVDERAGIARGVLTQALGPWKRPVAYLSKKLDPIASGWPSCLKAIAAVALLVKDADKLTVDQHMTVIAPHALESIVRQLPDCWMTNARMTHYQSLLLNDRITFAPPAILNPATLLPEAKDSTPVHRCTDVLAEETGTRKDLTDQPWPGVPNWYIDGSSFVVEGKRRAGAVVVDGKQVIWASSLPEGTSAQKAELLALTQALRLAEGKAINIYTDSRYAFATAHIHGAIYRQRGLLTSAGRDVKNKEEILALLEAIHLPQKLAIVHCLGHQKGADPVTKGNQMADLTAKQAAQGAVVLAEETGTPPEPPQASVIHPSFVYPYKDYDLIKDMTRAGKARMFSFGGLAKTKDGRIILPSKEGQDYVRRIHQLTHLGNEKLKQLIKGSKYYVLGLNTIIKEVIESCQACTLTNAARPFKEPGKRMRGDWPGIYWKVDFTEIKPGKYGNKYLLVFIDTFSGWVEAFPTKSETAQMVTKKILEEILPRFGIPKALEVVKTQIWDQIKEAYTPGTTEVPHRFQVGDSVLVRRHRAGTLEPRWKGPHLVLLTNPTAVKVDRIAAWIHASHIKKAPSQNENNPENNWTVAASDNPLKLRLRRSPNLGE", "length": 679, "header": "tr|A0A9J7K4A0-1|A0A9J7K4A0_CRIGR Isoform 1 of Protein NYNRIN-like isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC103162656 PE=4 SV=1 CANONICAL=A0A9J7K4A0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FA24", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA24" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FA24", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA24" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:103162656", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103162656", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 8, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K4A0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4A0" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K4A0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4A0" } ], "pmid": "" }, { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K4A0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4A0" } ], "pmid": "" }, { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K4A0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4A0" } ], "pmid": "" }, { "name": "RNA-DNA hybrid ribonuclease activity", "id": "GO:0004523", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004523", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K4A0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4A0" } ], "pmid": "" }, { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K4A0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4A0" } ], "pmid": "" }, { "name": "endonuclease activity", "id": "GO:0004519", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004519", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K4A0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4A0" } ], "pmid": "" }, { "name": "nucleotidyltransferase activity", "id": "GO:0016779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016779", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K4A0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4A0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K4A0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4A0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "DNA integration", "id": "GO:0015074", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015074", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K4A0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4A0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 657, "end_pos": 659, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7K4A0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4A0" }, { "id": "PS50994", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50994" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Integrase catalytic", "eco_id": "ECO_0000259", "start_pos": 502, "end_pos": 569, "start_aa": "Arg", "end_aa": "Leu", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7K4A0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4A0" }, { "id": "PS50879", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50879" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RNase H type-1", "eco_id": "ECO_0000259", "start_pos": 226, "end_pos": 372, "start_aa": "Trp", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 657, "end_pos": 659 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7K3U9-1", "uniprot_ac": "A0A9J7K3U9", "uniprot_id": "A0A9J7K3U9_CRIGR", "mass": { "chemical_mass": 20484.0, "monoisotopic_mass": 20484.0 }, "refseq": { "ac": "XP_035294841", "name": "tctex1 domain-containing protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035294841" }, "gene_names": [ { "name": "Tctex1d1", "type": "recommended", "evidence": [ { "id": "A0A9J7K3U9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3U9" } ] }, { "name": "Tctex1d1", "type": "synonym", "evidence": [ { "id": "XP_035294841", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035294841" } ] } ], "protein_names": [ { "name": "Tctex1 domain-containing protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7K3U9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3U9/entry#names_and_taxonomy" } ] }, { "name": "tctex1 domain-containing protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_035294841", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035294841" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035294841", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035294841" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K3U9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3U9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tctex1d1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3U9", "locus": {} } ], "crossref": [ { "id": "A0A9J7K3U9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K3U9", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd21458", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21458", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100752438", "url": "https://www.ncbi.nlm.nih.gov/gene/100752438", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005334", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005334", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038586", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038586", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752438", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752438", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FFZ7", "url": "https://www.orthodb.org/?gene=A0A9J7FFZ7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7K3U9", "url": "https://www.orthodb.org/?gene=A0A9J7K3U9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21255", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21255", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21255:SF64", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21255:SF64", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03645", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03645", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035294841", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035294841", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FFZ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFZ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FFZ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFZ7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K3U9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3U9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K3U9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3U9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMSALAKDKQFPALKKRGGVCSPSNHEFRQKEGHWRSKHSVSTVSYSDQPRQQYETSPFTVHMKNTYQLGPTKYFPVATVNRILKDVLTAYLQEAKYDPEFCKQMTKTISEVIKAQVKELMIPRYKLIVIVYIGQRDCQSILIASRCLWDPKSDTVSSYTFTNSTLFAVANVYGVYFE", "length": 178, "header": "tr|A0A9J7K3U9-1|A0A9J7K3U9_CRIGR Isoform 1 of Tctex1 domain-containing protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Tctex1d1 PE=3 SV=1 CANONICAL=A0A9J7K3U9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FFZ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFZ7/entry", "sequence": { "sequence": "MAERNNSKQQARRLEQRAENSHFELKGQSKGNKVSVSTVSYSDQPRQQYETSPFTVHMKNTYQLGPTKYFPVATVNRILKDVLTAYLQEAKYDPEFCKQMTKTISEVIKAQVKELMIPRYKLIVIVYIGQRDCQSILIASRCLWDPKSDTVSSYTFTNSTLFAVANVYGVYFE", "length": 173, "header": "tr|A0A9J7FFZ7-1|A0A9J7K3U9_CRIGR Computationally mapped isoform of Tctex1 domain-containing protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Tctex1d1 PE=3 SV=1 CANONICAL=A0A9J7K3U9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K3U9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3U9/entry", "sequence": { "sequence": "MMSALAKDKQFPALKKRGGVCSPSNHEFRQKEGHWRSKHSVSTVSYSDQPRQQYETSPFTVHMKNTYQLGPTKYFPVATVNRILKDVLTAYLQEAKYDPEFCKQMTKTISEVIKAQVKELMIPRYKLIVIVYIGQRDCQSILIASRCLWDPKSDTVSSYTFTNSTLFAVANVYGVYFE", "length": 178, "header": "tr|A0A9J7K3U9-1|A0A9J7K3U9_CRIGR Isoform 1 of Tctex1 domain-containing protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Tctex1d1 PE=3 SV=1 CANONICAL=A0A9J7K3U9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FFZ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFZ7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FFZ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFZ7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100752438", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752438", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K3U9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3U9" } ], "pmid": "" }, { "name": "cytoplasmic dynein complex", "id": "GO:0005868", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005868", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K3U9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3U9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "microtubule-based movement", "id": "GO:0007018", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007018", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K3U9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3U9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "dynein intermediate chain binding", "id": "GO:0045505", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045505", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K3U9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3U9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 163, "end_pos": 165, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 163, "end_pos": 165 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7K3M8-1", "uniprot_ac": "A0A9J7K3M8", "uniprot_id": "A0A9J7K3M8_CRIGR", "mass": { "chemical_mass": 180498.0, "monoisotopic_mass": 180498.0 }, "refseq": { "ac": "XP_035296265", "name": "NHS-like protein 1 isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035296265" }, "gene_names": [ { "name": "Nhsl1", "type": "recommended", "evidence": [ { "id": "A0A9J7K3M8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3M8" } ] }, { "name": "Nhsl1", "type": "synonym", "evidence": [ { "id": "XP_035296265", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035296265" } ] } ], "protein_names": [ { "name": "NHS-like protein 1 isoform X4", "type": "synonym", "evidence": [ { "id": "XP_035296265", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035296265" }, { "id": "A0A9J7K3M8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3M8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035296265", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035296265" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K3M8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3M8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Nhsl1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3M8", "locus": {} } ], "crossref": [ { "id": "100774825", "url": "https://www.ncbi.nlm.nih.gov/gene/100774825", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR024845", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024845", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100774825", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774825", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FHJ4", "url": "https://www.orthodb.org/?gene=A0A9J7FHJ4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7K3M8", "url": "https://www.orthodb.org/?gene=A0A9J7K3M8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23039", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23039", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23039:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23039:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15273", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15273", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035296265", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035296265", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FHJ4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHJ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FHJ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHJ4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GPK6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GPK6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GPK6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GPK6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GQK3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GQK3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GQK3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GQK3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K3M8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3M8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K3M8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3M8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPFHQRSVEPARLRRPEEAAVARAAGAPLFRSLEQVSSHTLVCLLAQLADLSRCAGDIFGELEGQAAALGHRTAELHRRLDALHAAAARLDHRRVKIPVSNLDEESRWTVHYTAPWHQQENVFLPTTRPPCVEDLHRQAKLNLKSVLRECDKLRRDGCRSSQYYSQGPTFAASTSPCDEYQDEDADTDRKCSISSSEEERFISIRRPKTPTSADFSDLHTQTNWTRSLPLPTPEEKTRQQAQTVQADVVPINITGENFDRQASLRRSLIYTDTLVRRPKKVKRRKTISGIPDIIQKELASVPGQDDDDDSGHSMYTPDHYSTLGRLDSYRPTGQRSETRDSSCQTEDVKVIPPSMRRIRAHKGLGIAAQMSHLPGSSGNMSVLSDSAGIVFPSRLNNDADFHSLPRSGARASTYSLESRMGALGSADNMDDTFRHQGGSSQGHENFAHLGGASRSGMLLRPKSQQLRFSESENIASPACVVSPHAAYSTSVIPNATLLSSSEVIVIHTAQSMGQLDSRMPGSSTYSKIKPRDRPMPRCSLKDDHQSPSHHWNERHIIHSQALASSASSATTLLSLCDSEVPLNAPASRENGSQAIPYHCRNNLNFPAHLPEVDGKSESSYSGDRGHGSSEPWECRASSNGQASPLKPHLATPGCSTPTSNMSSCSLDQTSVKEDARSLYSEDHDGYSVTTHSDSGHETGNVYNISDGFGNPRHSMVNVFDGRAQRSQGDQANHQDKSLSRNISLRKAKKPPLPPCRTDSLRRVPKKNSQSNGQMLNESLIASLQHSLQQSLPGKGGSSPSQSPCSDFEEPWLPRSRSQSIVSEGSSMTSTTTPNVYSLCGVTPSQSDTSSVKSEYTDPWGYYIDYTSFQEEPGNPTGGCSASSEAPTGNGPVCHIQEGSRGPMPQVPGGSVKPKITSPEKSQRVTSPSSGYSSQSNTPTALTPVPVFLKSMSPANGKGKAKPKVPERKSSLISSVSISSSSTSLSSNTSTEGSGTMKKLDSALASPLAPPPPLPPLPSPCLADKSSFLPPPPPLADCPEGSPLPPSPVFPPPPPEALVPFCSPTDRCLSPPPTALSSPLPGSSPPLPAPPPFLPSSEPPPAPPLDPKFMKDSRPFFKNSRQSESSREALRRPANKEEGCRPPMPLITTEALQMVQLRPVKKNSGAETALFSEPSAQEQRTPTAPQYHLKPSALLKSRNSINEMESESQPASVTSSHPMPAKSQSQGDHDRAAERGGLLSRSDGAQCPGPSLRTTLLPDSSPSRKPPPISKKPKLFLVVPPPQRDFTAEPTENGSEAFPGVPSPPRAEEEAVHSQEEKTSPASRAGSHATPPTPNSPVLERGAAGSLSPGCVETNVPMVQPSDSPGPTQEESAESSVDGEGNAESCRSQQGREAGLLEPNTASSSDARDFSKEDGSDDVMTPTRPMTTEDLFAAIHRSKRKVLGRKDSEDDHTRNHSPSPPVTPTGAAPSLASPKQVGSIQRSMKKSATSSDNFKALLLKKGSRSDTSARMSAAEMLKSTDPRFQRSRSEPSPDVPDSPSSCSPNKNRRAQEEWAKNEGLMPRSLSFSGPRYSRSRTPPSAASSRYSMRNRIQSSPMTVISEGEGEPAEPADNKTHRAPDSARGCSLDRLEGKKVDPDSLLCREEPTSVDGMGRAEGKGLSEHCGGSEELGSEPASLE", 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"length": 1599, "header": "tr|A0A9J7FHJ4-1|A0A9J7K3M8_CRIGR Computationally mapped isoform of NHS-like protein 1 isoform X4 OS=Cricetulus griseus OX=10029 GN=Nhsl1 PE=4 SV=1 CANONICAL=A0A9J7K3M8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GPK6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GPK6/entry", "sequence": { "sequence": "MPFHQRSVEPARLRRPEEAAVARAAGAPLFRSLEQVSSHTLVCLLAQLADLSRCAGDIFGELEGQAAALGHRTAELHRRLDALHAAAARLDHRRVKIPVSNLDEESRWTVHYTAPWHQQENVFLPTTRPPCVEDLHRQAKLNLKSVLRECDKLRRDGCRSSQYYSQGPTFAASTSPCDEYQDEDADTDRKCSISSSEEERFISIRRPKTPTSADFSDLHTQTNWTRSLPLPTPEEKTRQQAQTVQADVVPINITASVPGQDDDDDSGHSMYTPDHYSTLGRLDSYRPTGQRSETRDSSCQTEDVKVIPPSMRRIRAHKGLGIAAQMSHLPGSSGNMSVLSDSAGIVFPSRLNNDADFHSLPRSGARASTYSLESRMGALGSADNMDDTFRHQGGSSQGHENFAHLGGASRSGMLLRPKSQQLRFSESENIASPACVVSPHAAYSTSVIPNATLLSSSEVIVIHTAQSMGQLDSRMPGSSTYSKIKPRDRPMPRCSLKDDHQSPSHHWNERHIIHSQALASSASSATTLLSLCDSEVPLNAPASRENGSQAIPYHCRNNLNFPAHLPEVDGKSESSYSGDRGHGSSEPWECRASSNGQASPLKPHLATPGCSTPTSNMSSCSLDQTSVKEDARSLYSEDHDGYSVTTHSDSGHETGNVYNISDGFGNPRHSMVNVFDGRAQRSQGDQANHQDKSLSRNISLRKAKKPPLPPCRTDSLRRVPKKNSQSNGQMLNESLIASLQHSLQQSLPGKGGSSPSQSPCSDFEEPWLPRSRSQSIVSEGSSMTSTTTPNVYSLCGVTPSQSDTSSVKSEYTDPWGYYIDYTSFQEEPGNPTGGCSASSEAPTGNGPVCHIQEGSRGPMPQVPGGSVKPKITSPEKSQRVTSPSSGYSSQSNTPTALTPVPVFLKSMSPANGKGKAKPKVPERKSSLISSVSISSSSTSLSSNTSTEGSGTMKKLDSALASPLAPPPPLPPLPSPCLADKSSFLPPPPPLADCPEGSPLPPSPVFPPPPPEALVPFCSPTDRCLSPPPTALSSPLPGSSPPLPAPPPFLPSSEPPPAPPLDPKFMKDSRPFFKNSRQSESSREALRRPANKEEGCRPPMPLITTEALQMVQLRPVKKNSGAETALFSEPSAQEQRTPTAPQYHLKPSALLKSRNSINEMESESQPASVTSSHPMPAKSQSQGDHDRAAERGGLLSRSDGAQCPGPSLRTTLLPDSSPSRKPPPISKKPKLFLVVPPPQRDFTAEPTENGSEAFPGVPSPPRAEEEAVHSQEEKTSPASRAGSHATPPTPNSPVLERGAAGSLSPGCVETNVPMVQPSDSPGPTQEESAESSVDGEGNAESCRSQQGREAGLLEPNTASSSDARDFSKEDGSDDVMTPTRPMTTEDLFAAIHRSKRKVLGRKDSEDDHTRNHSPSPPVTPTGAAPSLASPKQVGSIQRSMKKSATSSDNFKALLLKKGSRSDTSARMSAAEMLKSTDPRFQRSRSEPSPDVPDSPSSCSPNKNRRAQEEWAKNEGLMPRSLSFSGPRYSRSRTPPSAASSRYSMRNRIQSSPMTVISEGEGEPAEPADNKTHRAPDSARGCSLDRLEGKKVDPDSLLCREEPTSVDGMGRAEGKGLSEHCGGSEELGSEPASLE", "length": 1633, "header": "tr|A0A9J7GPK6-1|A0A9J7GPK6_CRIGR Computationally mapped isoform of NHS-like protein 1 isoform X6 OS=Cricetulus griseus OX=10029 GN=Nhsl1 PE=4 SV=1 CANONICAL=A0A9J7K3M8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GQK3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GQK3/entry", "sequence": { "sequence": "MPFHQRSVEPARLRRPEEAAVARAAGAPLFRSLEQVSSHTLVCLLAQLADLSRCAGDIFGELEGQAAALGHRTAELHRRLDALHAAAARLDHRRVKIPVSNLDEESRWTVHYTAPWHQQENVFLPTTRPPCVEDLHRQAKLNLKSVLRECDKLRRDGCRSSQYYSQGPTFAASTSPCDEYQDEDADTDRKCSISSSEEERFISIRRPKTPTSADFSDLHTQTNWTRSLPLPTPEEKTRQQAQTVQADVVPINITDNRSLSALSPASVPGQDDDDDSGHSMYTPDHYSTLGRLDSYRPTGQRSETRDSSCQTEDVKVIPPSMRRIRAHKGLGIAAQMSHLPGSSGNMSVLSDSAGIVFPSRLNNDADFHSLPRSGARASTYSLESRMGALGSADNMDDTFRHQGGSSQGHENFAHLGGASRSGMLLRPKSQQLRFSESENIASPACVVSPHAAYSTSVIPNATLLSSSEVIVIHTAQSMGQLDSRMPGSSTYSKIKPRDRPMPRCSLKDDHQSPSHHWNERHIIHSQALASSASSATTLLSLCDSEVPLNAPASRENGSQAIPYHCRNNLNFPAHLPEVDGKSESSYSGDRGHGSSEPWECRASSNGQASPLKPHLATPGCSTPTSNMSSCSLDQTSVKEDARSLYSEDHDGYSVTTHSDSGHETGNVYNISDGFGNPRHSMVNVFDGRAQRSQGDQANHQDKSLSRNISLRKAKKPPLPPCRTDSLRRVPKKNSQSNGQMLNESLIASLQHSLQQSLPGKGGSSPSQSPCSDFEEPWLPRSRSQSIVSEGSSMTSTTTPNVYSLCGVTPSQSDTSSVKSEYTDPWGYYIDYTSFQEEPGNPTGGCSASSEAPTGNGPVCHIQEGSRGPMPQVPGGSVKPKITSPEKSQRVTSPSSGYSSQSNTPTALTPVPVFLKSMSPANGKGKAKPKVPERKSSLISSVSISSSSTSLSSNTSTEGSGTMKKLDSALASPLAPPPPLPPLPSPCLADKSSFLPPPPPLADCPEGSPLPPSPVFPPPPPEALVPFCSPTDRCLSPPPTALSSPLPGSSPPLPAPPPFLPSSEPPPAPPLDPKFMKDSRPFFKNSRQSESSREALRRPANKEEGCRPPMPLITTEALQMVQLRPVKKNSGAETALFSEPSAQEQRTPTAPQYHLKPSALLKSRNSINEMESESQPASVTSSHPMPAKSQSQGDHDRAAERGGLLSRSDGAQCPGPSLRTTLLPDSSPSRKPPPISKKPKLFLVVPPPQRDFTAEPTENGSEAFPGVPSPPRAEEEAVHSQEEKTSPASRAGSHATPPTPNSPVLERGAAGSLSPGCVETNVPMVQPSDSPGPTQEESAESSVDGEGNAESCRSQQGREAGLLEPNTASSSDARDFSKEDGSDDVMTPTRPMTTEDLFAAIHRSKRKVLGRKDSEDDHTRNHSPSPPVTPTGAAPSLASPKQVGSIQRSMKKSATSSDNFKALLLKKGSRSDTSARMSAAEMLKSTDPRFQRSRSEPSPDVPDSPSSCSPNKNRRAQEEWAKNEGLMPRSLSFSGPRYSRSRTPPSAASSRYSMRNRIQSSPMTVISEGEGEPAEPADNKTHRAPDSARGCSLDRLEGKKVDPDSLLCREEPTSVDGMGRAEGKGLSEHCGGSEELGSEPASLE", "length": 1643, "header": "tr|A0A9J7GQK3-1|A0A9J7GQK3_CRIGR Computationally mapped isoform of NHS-like protein 1 isoform X5 OS=Cricetulus griseus OX=10029 GN=Nhsl1 PE=4 SV=1 CANONICAL=A0A9J7K3M8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K3M8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3M8/entry", "sequence": { "sequence": "MPFHQRSVEPARLRRPEEAAVARAAGAPLFRSLEQVSSHTLVCLLAQLADLSRCAGDIFGELEGQAAALGHRTAELHRRLDALHAAAARLDHRRVKIPVSNLDEESRWTVHYTAPWHQQENVFLPTTRPPCVEDLHRQAKLNLKSVLRECDKLRRDGCRSSQYYSQGPTFAASTSPCDEYQDEDADTDRKCSISSSEEERFISIRRPKTPTSADFSDLHTQTNWTRSLPLPTPEEKTRQQAQTVQADVVPINITGENFDRQASLRRSLIYTDTLVRRPKKVKRRKTISGIPDIIQKELASVPGQDDDDDSGHSMYTPDHYSTLGRLDSYRPTGQRSETRDSSCQTEDVKVIPPSMRRIRAHKGLGIAAQMSHLPGSSGNMSVLSDSAGIVFPSRLNNDADFHSLPRSGARASTYSLESRMGALGSADNMDDTFRHQGGSSQGHENFAHLGGASRSGMLLRPKSQQLRFSESENIASPACVVSPHAAYSTSVIPNATLLSSSEVIVIHTAQSMGQLDSRMPGSSTYSKIKPRDRPMPRCSLKDDHQSPSHHWNERHIIHSQALASSASSATTLLSLCDSEVPLNAPASRENGSQAIPYHCRNNLNFPAHLPEVDGKSESSYSGDRGHGSSEPWECRASSNGQASPLKPHLATPGCSTPTSNMSSCSLDQTSVKEDARSLYSEDHDGYSVTTHSDSGHETGNVYNISDGFGNPRHSMVNVFDGRAQRSQGDQANHQDKSLSRNISLRKAKKPPLPPCRTDSLRRVPKKNSQSNGQMLNESLIASLQHSLQQSLPGKGGSSPSQSPCSDFEEPWLPRSRSQSIVSEGSSMTSTTTPNVYSLCGVTPSQSDTSSVKSEYTDPWGYYIDYTSFQEEPGNPTGGCSASSEAPTGNGPVCHIQEGSRGPMPQVPGGSVKPKITSPEKSQRVTSPSSGYSSQSNTPTALTPVPVFLKSMSPANGKGKAKPKVPERKSSLISSVSISSSSTSLSSNTSTEGSGTMKKLDSALASPLAPPPPLPPLPSPCLADKSSFLPPPPPLADCPEGSPLPPSPVFPPPPPEALVPFCSPTDRCLSPPPTALSSPLPGSSPPLPAPPPFLPSSEPPPAPPLDPKFMKDSRPFFKNSRQSESSREALRRPANKEEGCRPPMPLITTEALQMVQLRPVKKNSGAETALFSEPSAQEQRTPTAPQYHLKPSALLKSRNSINEMESESQPASVTSSHPMPAKSQSQGDHDRAAERGGLLSRSDGAQCPGPSLRTTLLPDSSPSRKPPPISKKPKLFLVVPPPQRDFTAEPTENGSEAFPGVPSPPRAEEEAVHSQEEKTSPASRAGSHATPPTPNSPVLERGAAGSLSPGCVETNVPMVQPSDSPGPTQEESAESSVDGEGNAESCRSQQGREAGLLEPNTASSSDARDFSKEDGSDDVMTPTRPMTTEDLFAAIHRSKRKVLGRKDSEDDHTRNHSPSPPVTPTGAAPSLASPKQVGSIQRSMKKSATSSDNFKALLLKKGSRSDTSARMSAAEMLKSTDPRFQRSRSEPSPDVPDSPSSCSPNKNRRAQEEWAKNEGLMPRSLSFSGPRYSRSRTPPSAASSRYSMRNRIQSSPMTVISEGEGEPAEPADNKTHRAPDSARGCSLDRLEGKKVDPDSLLCREEPTSVDGMGRAEGKGLSEHCGGSEELGSEPASLE", "length": 1677, "header": "tr|A0A9J7K3M8-1|A0A9J7K3M8_CRIGR Isoform 1 of NHS-like protein 1 isoform X4 OS=Cricetulus griseus OX=10029 GN=Nhsl1 PE=4 SV=1 CANONICAL=A0A9J7K3M8-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1367, "start_aa": "Thr", "end_pos": 1367, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1367", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1464, "start_aa": "Thr", "end_pos": 1464, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1464", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 232, "start_aa": "Thr", "end_pos": 232, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr232", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 651, "start_aa": "Thr", "end_pos": 651, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr651", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FHJ4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHJ4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FHJ4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHJ4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100774825", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774825", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K3M8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3M8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1292, "end_pos": 1294, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1454, "end_pos": 1456, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1612, "end_pos": 1614, "annotation": "n_glycosylation_sequon" }, { "start_pos": 223, "end_pos": 225, "annotation": "n_glycosylation_sequon" }, { "start_pos": 252, "end_pos": 254, "annotation": "n_glycosylation_sequon" }, { "start_pos": 379, "end_pos": 381, "annotation": "n_glycosylation_sequon" }, { "start_pos": 494, "end_pos": 496, "annotation": "n_glycosylation_sequon" }, { "start_pos": 590, "end_pos": 592, "annotation": "n_glycosylation_sequon" }, { "start_pos": 660, "end_pos": 662, "annotation": "n_glycosylation_sequon" }, { "start_pos": 703, "end_pos": 705, "annotation": "n_glycosylation_sequon" }, { "start_pos": 741, "end_pos": 743, "annotation": "n_glycosylation_sequon" }, { "start_pos": 776, "end_pos": 778, "annotation": "n_glycosylation_sequon" }, { "start_pos": 987, "end_pos": 989, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], 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"database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272412" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027272412", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272412" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JYQ4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYQ4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tecpr2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYQ4", "locus": {} } ], "crossref": [ { "id": "100756039", "url": "https://www.ncbi.nlm.nih.gov/gene/100756039", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006624", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006624", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056499", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056499", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100756039", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756039", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JYQ4", "url": "https://www.orthodb.org/?gene=A0A9J7JYQ4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23287", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23287", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23287:SF16", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23287:SF16", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06462", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06462", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF19193", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19193", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23756", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23756", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027272412", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027272412", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G098", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G098", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G098-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G098-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GZ20", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZ20", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GZ20-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZ20-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JYQ4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYQ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JYQ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYQ4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASISEPVTFREFCPLYYLLNAIPTKIQRGFRSLLVYLTALDANSDYIAVGSSIGMLYLYCRHLNQMKKYNFEGKTESITVVKLLSCFDDLVAAGTASGRVAVFQLVSSLPGRNKQLRRFDVTGVHKTSITALAWSPNGMKLFSGDDKGKIVYSSLDLDQGVCNSHLVLEEPSSIVQLDYSQKVLLVSTLQRSLLFHTEEKAVKQIGSQPRKSTGKFGACFIPGLCKQSDLTLYAARPGLRLWKADVHGTVQATFILKDVFAGGVTPFELYPRLEPSDGGSCSAPEKHLGLVSCFFREGWVLSWNEYSIYLLDTINQATVAGLEGLGDIVSVTCTENEIFFLKGDRNIIRISSRPEGLASIVRDGLQTRCSDQVHGQHLEKSPGATVCETRLRGSSVASSVASEQRSRSSSLNSTDSGSGLLLLGLQAAPELDQGSQPSSQRFSVISSEDFDQELIVKPIKVKKRRRRRKTEGGTRSTCHSSLESTPCSEFPGGSPQSLNTELLSMTSSALASSVDQLSTGSPDQESNPSVEVNGIVPEDNGPETFSILEVPESAPGPVAEENGTGEEACDHIQDVDLVNGVSGLHFPPGEDGGDDIIPGLKEEPDPAADPAAAAVHAQLCLQEQDSSAEAQEGHTIVSSDPQSTFSEAPPLDSLTVPSSLSWPPGAEQWLPGIGVCEVSTEEASPEPDILTHVEVPSHLSANPWHVVTDHDTGQKETPTSECGTGNMGAQETTPLVSALVADTREHWLDQPLQDEAVTSSDEEDIYAHGLPSSPSETSVAELEAGRSLQDLSQPGTDDTTLLKADQFAESWMGYSGPGYGILSLAVSEKFIWCLDYKGGLFCSALPGAGLRWQRFEDAVQQVAVSPSGALLWKIEQKSNRAFACGKVTIKGKRHWYEALPQAVFVALSDDTAWIIRTNGDLYLQTGLSVDRPCARAVKVDCPCPLSQITARNSVVWALTEQRALLYREGVSPFCPEGEQWKCDIVSERQTLEPVCITLGDQHTLWALDIHGKLWFRTGVVPKKPQGDDDHWWQVSITDYVVFDQCSLFQAIMHATHSVATAAQAPVEKAADKLRMAFWSQQLQCQPSLLGVNNSGVWVSSGKNEFHVAKGNLIGTYWNNVVPRGTASATKWAFVLASPAPTQDGSSLWLCQSSKDLCNISAQSVQCRPSTVQLPPDVDMRTYAACRDALWALDNLGQVFIRTLSKSCPTGMHWTRLDLSQLGTVRLTSLACGNQHVWACDSKGGVYFRVGTQPLNPSLMLPAWIMIEPPVQPAGVTLVSVHSSPNDQMLWALDSRWNVHVRTGITEEMPVGTDWEHVPGLQACQLALSTRTVWARCPNGDLARRYGITDKNPAGDYWKKIPGSVSFFTVTSSDELWAVGSPGCLLQRLTKTFSHSHNTQKNSQTAAPHPEDLEDEWEVI", "length": 1420, "header": "tr|A0A9J7JYQ4-1|A0A9J7JYQ4_CRIGR Isoform 1 of Tectonin beta-propeller repeat-containing protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Tecpr2 PE=4 SV=1 CANONICAL=A0A9J7JYQ4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G098-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G098/entry", "sequence": { "sequence": "MKLFSGDDKGKIVYSSLDLDQGVCNSHLVLEEPSSIVQLDYSQKVLLVSTLQRSLLFHTEEKAVKQIGSQPRKSTGKFGACFIPGLCKQSDLTLYAARPGLRLWKADVHGTVQATFILKDVFAGGVTPFELYPRLEPSDGGSCSAPEKHLGLVSCFFREGWVLSWNEYSIYLLDTINQATVAGLEGLGDIVSVTCTENEIFFLKGDRNIIRISSRPEGLASIVRDGLQTRCSDQVHGQHLEKSPGATVCETRLRGSSVASSVASEQRSRSSSLNSTDSGSGLLLLGLQAAPELDQGSQPSSQRFSVISSEDFDQELIVKPIKVKKRRRRRKTEGGTRSTCHSSLESTPCSEFPGGSPQSLNTELLSMTSSALASSVDQLSTGSPDQESNPSVEVNGIVPEDNGPETFSILEVPESAPGPVAEENGTGEEACDHIQDVDLVNGVSGLHFPPGEDGGDDIIPGLKEEPDPAADPAAAAVHAQLCLQEQDSSAEAQEGHTIVSSDPQSTFSEAPPLDSLTVPSSLSWPPGAEQWLPGIGVCEVSTEEASPEPDILTHVEVPSHLSANPWHVVTDHDTGQKETPTSECGTGNMGAQETTPLVSALVADTREHWLDQPLQDEAVTSSDEEDIYAHGLPSSPSETSVAELEAGRSLQDLSQPGTDDTTLLKADQFAESWMGYSGPGYGILSLAVSEKFIWCLDYKGGLFCSALPGAGLRWQRFEDAVQQVAVSPSGALLWKIEQKSNRAFACGKVTIKGKRHWYEALPQAVFVALSDDTAWIIRTNGDLYLQTGLSVDRPCARAVKVDCPCPLSQITARNSVVWALTEQRALLYREGVSPFCPEGEQWKCDIVSERQTLEPVCITLGDQHTLWALDIHGKLWFRTGVVPKKPQGDDDHWWQVSITDYVVFDQCSLFQAIMHATHSVATAAQAPVEKAADKLRMAFWSQQLQCQPSLLGVNNSGVWVSSGKNEFHVAKGNLIGTYWNNVVPRGTASATKWAFVLASPAPTQDGSSLWLCQSSKDLCNISAQSVQCRPSTVQLPPDVDMRTYAACRDALWALDNLGQVFIRTLSKSCPTGMHWTRLDLSQLGTVRLTSLACGNQHVWACDSKGGVYFRVGTQPLNPSLMLPAWIMIEPPVQPAGVTLVSVHSSPNDQMLWALDSRWNVHVRTGITEEMPVGTDWEHVPGLQACQLALSTRTVWARCPNGDLARRYGITDKNPAGDYWKKIPGSVSFFTVTSSDELWAVGSPGCLLQRLTKTFSHSHNTQKNSQTAAPHPEDLEDEWEVI", "length": 1281, "header": "tr|A0A9J7G098-1|A0A9J7JYQ4_CRIGR Computationally mapped isoform of Tectonin beta-propeller repeat-containing protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Tecpr2 PE=4 SV=1 CANONICAL=A0A9J7JYQ4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GZ20-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZ20/entry", "sequence": { "sequence": "MASISEPVTFREFCPLYYLLNAIPTKIQRGFRSLLVYLTALDANSDYIAVGSSIGMLYLYCRHLNQMKKYNFEGKTESITVVKLLSCFDDLVAAGTASGRVAVFQLVSSLPGRNKQLRRFDVTGVHKTSITALAWSPNGMKLFSGDDKGKIVYSSLDLDQGVCNSHLVLEEPSSIVQLDYSQKVLLVSTLQRSLLFHTEEKAVKQIGSQPRKSTGKFGACFIPGLCKQSDLTLYAARPGLRLWKADVHGTVQATFILKDVFAGGVTPFELYPRLEPSDGGSCSAPEKHLGLVSCFFREGWVLSWNEYSIYLLDTINQATVAGLEGLGDIVSVTCTENEIFFLKGDRNIIRISSRPEGLASIVRDGLQTRCSDQVHGQHLEKSPGATVCETRLRGSSVASSVASEQRSRSSSLNSTDSGSGLLLLGLQAAPELDQGSQPSSQRFSVISSEDFDQELIVKPIKVKKRRRRRKTEGGTRSTCHSSLESTPCSEFPGGSPQSLNTELLSMTSSALASSVDQLSTGSPDQESNPSVEVNGIVPEDNGPETFSILEVPESAPGPVAEENGTGEEACDHIQDVDLVNGVSGLHFPPGEDGGDDIIPGLKEEPDPAADPAAAAVHAQLCLQEQDSSAEAQEGHTIVSSDPQSTFSEAPPLDSLTVPSSLSWPPGAEQWLPGIGVCEVSTEEASPEPDILTHVEVPSHLSANPWHVVTDHDTGQKETPTSECGTGNMGAQETTPLVSALVADTREHWLDQPLQDEAVTSSDEEDIYAHGLPSSPSETSVAELEAGRSLQDLSQPGTDDTTLLKADQFAESWMGYSGPGYGILSLAVSEKFIWCLDYKGGLFCSALPGAGLRWQRFEDAVQQVAVSPSGALLWKIEQKSNRAFACGKVTIKGKRHWYEALPQAVFVALSDDTAWIIRTNGDLYLQTGLSVDRPCARAVKVDCPCPLSQITARNSVVWALTEQRALLYREGVSPFCPEGEQWKCDIVSERQTLEPVCITLGDQHTLWALDIHGKLWFRTGVVPKKPQGDDDHWWQVSITDYVVFDQCSLFQAIMHATHSVATAAQAPVEKAADKLRMAFWSQQLQCQPSLLGVNNSGVWVSSGKNEFHVAKGNLIGTYWNNVVPRGTASATKWAFVLASPAPTQDGSSLWLCQSSKDLCNISAQSVQCRPSTVQLPPDVDMRTYAACRDALWALDNLGQVFIRTLSKSCPTGMHWTRLDLSQLGTVRLTSLACGNQHVWACDSKGGVYFRVGTQPLNPSLMLPAWIMIEPPVQIPQ", "length": 1275, "header": "tr|A0A9J7GZ20-1|A0A9J7GZ20_CRIGR Computationally mapped isoform of Tectonin beta-propeller repeat-containing protein 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Tecpr2 PE=4 SV=1 CANONICAL=A0A9J7JYQ4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JYQ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYQ4/entry", "sequence": { "sequence": "MASISEPVTFREFCPLYYLLNAIPTKIQRGFRSLLVYLTALDANSDYIAVGSSIGMLYLYCRHLNQMKKYNFEGKTESITVVKLLSCFDDLVAAGTASGRVAVFQLVSSLPGRNKQLRRFDVTGVHKTSITALAWSPNGMKLFSGDDKGKIVYSSLDLDQGVCNSHLVLEEPSSIVQLDYSQKVLLVSTLQRSLLFHTEEKAVKQIGSQPRKSTGKFGACFIPGLCKQSDLTLYAARPGLRLWKADVHGTVQATFILKDVFAGGVTPFELYPRLEPSDGGSCSAPEKHLGLVSCFFREGWVLSWNEYSIYLLDTINQATVAGLEGLGDIVSVTCTENEIFFLKGDRNIIRISSRPEGLASIVRDGLQTRCSDQVHGQHLEKSPGATVCETRLRGSSVASSVASEQRSRSSSLNSTDSGSGLLLLGLQAAPELDQGSQPSSQRFSVISSEDFDQELIVKPIKVKKRRRRRKTEGGTRSTCHSSLESTPCSEFPGGSPQSLNTELLSMTSSALASSVDQLSTGSPDQESNPSVEVNGIVPEDNGPETFSILEVPESAPGPVAEENGTGEEACDHIQDVDLVNGVSGLHFPPGEDGGDDIIPGLKEEPDPAADPAAAAVHAQLCLQEQDSSAEAQEGHTIVSSDPQSTFSEAPPLDSLTVPSSLSWPPGAEQWLPGIGVCEVSTEEASPEPDILTHVEVPSHLSANPWHVVTDHDTGQKETPTSECGTGNMGAQETTPLVSALVADTREHWLDQPLQDEAVTSSDEEDIYAHGLPSSPSETSVAELEAGRSLQDLSQPGTDDTTLLKADQFAESWMGYSGPGYGILSLAVSEKFIWCLDYKGGLFCSALPGAGLRWQRFEDAVQQVAVSPSGALLWKIEQKSNRAFACGKVTIKGKRHWYEALPQAVFVALSDDTAWIIRTNGDLYLQTGLSVDRPCARAVKVDCPCPLSQITARNSVVWALTEQRALLYREGVSPFCPEGEQWKCDIVSERQTLEPVCITLGDQHTLWALDIHGKLWFRTGVVPKKPQGDDDHWWQVSITDYVVFDQCSLFQAIMHATHSVATAAQAPVEKAADKLRMAFWSQQLQCQPSLLGVNNSGVWVSSGKNEFHVAKGNLIGTYWNNVVPRGTASATKWAFVLASPAPTQDGSSLWLCQSSKDLCNISAQSVQCRPSTVQLPPDVDMRTYAACRDALWALDNLGQVFIRTLSKSCPTGMHWTRLDLSQLGTVRLTSLACGNQHVWACDSKGGVYFRVGTQPLNPSLMLPAWIMIEPPVQPAGVTLVSVHSSPNDQMLWALDSRWNVHVRTGITEEMPVGTDWEHVPGLQACQLALSTRTVWARCPNGDLARRYGITDKNPAGDYWKKIPGSVSFFTVTSSDELWAVGSPGCLLQRLTKTFSHSHNTQKNSQTAAPHPEDLEDEWEVI", "length": 1420, "header": "tr|A0A9J7JYQ4-1|A0A9J7JYQ4_CRIGR Isoform 1 of Tectonin beta-propeller repeat-containing protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Tecpr2 PE=4 SV=1 CANONICAL=A0A9J7JYQ4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G098", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G098" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G098", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G098" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100756039", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756039", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JYQ4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYQ4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein exit from endoplasmic reticulum", "id": "GO:0032527", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032527", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JYQ4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYQ4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1093, "end_pos": 1095, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1159, "end_pos": 1161, "annotation": "n_glycosylation_sequon" }, { "start_pos": 413, "end_pos": 415, "annotation": "n_glycosylation_sequon" }, { "start_pos": 563, "end_pos": 565, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JYQ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYQ4" }, { "id": "PF23756", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23756" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "HPS5-like beta-propeller", "eco_id": "ECO_0000259", "start_pos": 36, "end_pos": 345, "start_aa": "Val", "end_aa": "Asp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1093, "end_pos": 1095 }, { "start_pos": 1159, "end_pos": 1161 }, { "start_pos": 413, "end_pos": 415 }, { "start_pos": 563, "end_pos": 565 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H1X3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1X3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JWS7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWS7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JWS7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWS7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JZE4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZE4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JZE4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZE4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K6T5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K6T5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K6T5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K6T5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSDRLGQITQGKDGKSKYSTLSLFDKYKGRSVGAVRSSVIPRHGLQSLGKVATARRMPPPANLPSLKSENKGNDPNIVIVPKDGTGWANKQDQQDPKSSSVTASQPPESQPQPGLQKSVSNLQKPTQSISQENTNSVPGGPKSWAQLSGKPVGHEGGLRGSSRLLSFSPEEFPTLKAAGGQDKAGKEKGALDLSYGPGPSLRPQNVTSWREGGGRNIISTTSLNASPTELGSRNSSAGDGAPSSACASESKDPSLRPAQPIRKGASQFMGHTYQPPTYHDMLPAFMCSPQSSENQGMVERSSFPLPQLRLEPRVPFRQFQMNDQEGKERPVLARPVRPLRQLVERAPRPTIINAENLKGLDDLDTDADDGWAGLHEEVDYSEKLKFSDDEEEEEAVKDGRSKWNTWDPRRQRELSLSSADSADAKRTQEEGKDWGEAASVSRGVRKVPEPPPPSRKLHSWPAGPDYQKPSMGSIFRQHSVEDKEDKPPPRQKFIQSEMSEAVERARKRREEEERRAREERLAACAAKLKQLDQKCKQAQKASEAPKPVEKEVPRSPGIEKVSPQENGPVVRKGSPEFPVQEAPTMFLEETPAASPAVAQSSSSSSSSAGEEEVREAGSPAQEFSKYQKSLPPRFQRQQQQQQQQQQQQQQQQQQQQQQEQLYKMQHWQPVYPPPSHPQRTFYPHHPQMLGFDPRWMMMPSYMDPRITPTRTPVDFYPSALHPSGLMKPMMPQESLSGTGCHSEDQNCVPSLQERKVTTIDPAPVWSPEGYMALQSKGYSLAHPKSADTLAMDMHVRNERSYSASPGRSGGISAQRDLFEERGEEYLSAFDKKAQADFDSCISSQRIGQELLFPPQENVQEVGAPGGRTPNLRCSPLEPDFVPAEKKPEYGSWDVGHQPKAADTANSVELEAPREEPSFHVPSWEKEGSPKKQPNPEPDWTPEPRSQHQEHPGRTRRSGPIKKPVLKALKIEEKEKALERVRQGLGEESSQLAVDKEPMCRAEEDEDEENNPALANASSSALEDKAAVRPGFGHEANKLDEDAKSDKTWESRPSREASDIPPTKRNNWIFIDEEQAFGGRGQARSRGRGFREFTFRGSRPAGSNTSGLGGAGVLGARSMYSSGHRSSRGRGLRDFPLPEDCPRAKPRRRIASETHSEGSEYEELPKRRRQRGSEPGHEGMLLERDEGALKKDSWRSNRTYTEDQGGPDARSRGARPCGRALPPRLSNCSYGRRSFVAKEPPHWQSRSPGSSWQEYGPSDPCGPRRATDRDYIPESYRHTDTFGSRVFEDSRMEDKRSFFQDDHGADSENAENRPFRRRRPPRQDKPPRFRRLRQERESLGLWGPEEESHLLASQWPGRSKLCPGDKNGPGDHRSPELSYQNSSDHANEEWETASESSDFSERRERREGLTAEPEAQGDGGLSGASLGEKKELAKRSFSSQRPLADRQSRKLEPGGFGEKPVRPGGGETSPRCESQQSGTPLKVKRSPDEALPGGLGCSNGSHSSYALERTPHASSDSPETASKKAEKEAALAAQRAGEQQEEARKQFDLGYGNAIIDNCGSSPGEESEVGAMGGEGFIEVLTKKQRRLLEEERRKKEQAAQVPVKGRGLSSRIPPRFAKKQNSLCLEQGDMAVPGSSLGTEIWESGSQALPVQGAASDSWRKAVTAFSSTEPGTSEQGFKSSQGDSGVDLSAESRESSATSSQRSSPYGTLKPEEMSGPGLVEPKADSHKDQKQSEHKDPDQSPGQSKEHRPGPIGNERSLKNRKGSEGGERLQGAGVPPVNGVEIHVDSVLPVPPIEFGVNPKDSDFSLPPGSASGPVGNPVAKLQDVLASNAGLTQSIPILRRDHHIQRAIGLSPMSFPTADLTLKMESARKAWENSPSLPEQSSPGGAGSGIQPPSSVGASNGVNYSSFGGVSMPPMPVASVAPSASMPGNHLPPLYLDGHVFASQPRLVPQTIPQQQSYQQAATAQQIPISLHTSLQAQAQLGLRGGLPVSQSQEIFSSLQPFRSQVYMHPSLSPPSTMILSGGTALKPPYSAFPGIQPLEMVKPQSGSPYQPMSGSQALVYEGQLGQAAGLGTSQMLDSQLPQLTMPLPRYGSGQQPLILPQSIQLPPGQSLSVGAPRRIPPPGSQPPVLNTSRESAQMELKGFHFADSKQNVPTGGSAPSPQAYRPSSASPSGKPSGSAVNMGSVQGHYVQQAKRMDEKPSLGTVKLQEASSATSQMKRTGAIKPRAVKVEESKA", "length": 2240, "header": "tr|A0A9J7K6T5-1|A0A9J7K6T5_CRIGR Isoform 1 of Protein PRRC2B isoform X2 OS=Cricetulus griseus OX=10029 GN=Prrc2b PE=4 SV=1 CANONICAL=A0A9J7K6T5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G8A3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G8A3/entry", "sequence": { "sequence": "MSDRLGQITQGKDGKSKYSTLSLFDKYKGRSVGAVRSSVIPRHGLQSLGKVATARRMPPPANLPSLKSENKGNDPNIVIVPKDGTGWANKQDQQDPKSSSVTASQPPESQPQPGLQKSVSNLQKPTQSISQENTNSVPGGPKSWAQLSGKPVGHEGGLRGSSRLLSFSPEEFPTLKAAGGQDKAGKEKGALDLSYGPGPSLRPQNVTSWREGGGRNIISTTSLNASPTELGSRNSSAGDGAPSSACASESKDPSLRPAQPIRKGASQFMGHTYQPPTYHDMLPAFMCSPQSSENQGMVERSSFPLPQLRLEPRVPFRQFQMNDQEGKERPVLARPVRPLRQLVERAPRPTIINAENLKGLDDLDTDADDGWAGLHEEVDYSEKLKFSDDEEEEEAVKDGRSKWNTWDPRRQRELSLSSADSADAKRTQEEGKDWGEAASVSRGVRKVPEPPPPSRKLHSWPAGPDYQKPSMGSIFRQHSVEDKEDKPPPRQKFIQSEMSEAVERARKRREEEERRAREERLAACAAKLKQLDQKCKQAQKASEAPKPVEKEVPRSPGIEKVSPQENGPVVRKGSPEFPVQEAPTMFLEETPAASPAVAQSSSSSSSSAGEEEVREAGSPAQEFSKYQKSLPPRFQRQQQQQQQQQQQQQQQQQQQQQQEQLYKMQHWQPVYPPPSHPQRTFYPHHPQMLGFDPRWMMMPSYMDPRITPTRTPVDFYPSALHPSGLMKPMMPQESLSGTGCHSEDQNCVPSLQERKVTTIDPAPVWSPEGYMALQSKGYSLAHPKSADTLAMDMHVRNERSYSASPGRSGGISAQRDLFEERGEEYLSAFDKKAQADFDSCISSQRIGQELLFPPQENVQEVGAPGGRTPNLRCSPLEPDFVPAEKKPEYGSWDVGHQPKAADTANSVELEAPREEPSFHVPSWEKEGSPKKQPNPEPDWTPEPRSQHQEHPGRTRRSGPIKKPVLKALKIEEKEKALERVRQGLGEESSQLAVDKEPMCRAEEDEDEENNPALANASSSALEDKAAVRPGFGHEANKLDEDAKSDKTWESRPSREASDIPPTKRNNWIFIDEEQAFGGRGQARSRGRGFREFTFRGSRPAGSNTSGLGGAGVLGARSMYSSGHRSSRGRGLRDFPLPEDCPRAKPRRRIASETHSEGSEYEELPKRRRQRGSEPGHEGMLLERDEGALKKDSWRSNRTYTEDQGGPDARSRGARPCGRALPPRLSNCSYGRRSFVAKEPPHWQSRSPGSSWQEYGPSDPCGPRRATDRDYIPESYRHTDTFGSRVFEDSRMEDKRSFFQDDHGADSENAENRPFRRRRPPRQDKPPRFRRLRQERESLGLWGPEEESHLLASQWPGRSKLCPGDKNGPGDHRSPELSYQNSSDHANEEWETASESSDFSERRERREGLTAEPEAQGDGGLSGASLGEKKELAKRSFSSQRPLADRQSRKLEPGGFGEKPVRPGGGETSPRCESQQSGTPLKVKRSPDEALPGGLGCSNGSHSSYALERTPHASSDSPETASKKAEKEAALAAQRAGEQQEEARKQFDLGYGNAIIDNCGSSPGEESEVGAMGGEGFIEVLTKKQRRLLEEERRKKEQAAQVPVKGRGLSSRIPPRFAKKQNSLCLEQGDMAVPGSSLGTEIWESGSQALPVQGAASDSWRKAVTAFSSTEPGTSEGFKSSQGDSGVDLSAESRESSATSSQRSSPYGTLKPEEMSGPGLVEPKADSHKDQKQSEHKDPDQSPGQSKEHRPGPIGNERSLKNRKGSEGGERLQGAGVPPVNGVEIHVDSVLPVPPIEFGVNPKDSDFSLPPGSASGPVGNPVAKLQDVLASNAGLTQSIPILRRDHHIQRAIGLSPMSFPTADLTLKMESARKAWENSPSLPEQSSPGGAGSGIQPPSSVGASNGVNYSSFGGVSMPPMPVASVAPSASMPGNHLPPLYLDGHVFASQPRLVPQTIPQQQSYQQAATAQQIPISLHTSLQAQAQLGLRGGLPVSQSQEIFSSLQPFRSQVYMHPSLSPPSTMILSGGTALKPPYSAFPGIQPLEMVKPQSGSPYQPMSGSQALVYEGQLGQAAGLGTSQMLDSQLPQLTMPLPRYGSGQQPLILPQSIQLPPGQSLSVGAPRRIPPPGSQPPVLNTSRESAQMELKGFHFADSKQNVPTGGSAPSPQAYRPSSASPSGKPSGSAVNMGSVQGHYVQQAKRMDEKPSLGTVKLQEASSATSQMKRTGAIKPRAVKVEESKA", "length": 2239, "header": "tr|A0A9J7G8A3-1|A0A9J7K6T5_CRIGR Computationally mapped isoform of Protein PRRC2B isoform X2 OS=Cricetulus griseus OX=10029 GN=Prrc2b PE=4 SV=1 CANONICAL=A0A9J7K6T5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GB93-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB93/entry", "sequence": { "sequence": "MSDRLGQITQGKDGKSKYSTLSLFDKYKGRSVGAVRSSVIPRHGLQSLGKVATARRMPPPANLPSLKSENKGNDPNIVIVPKDGTGWANKQDQQDPKSSSVTASQPPESQPQPGLQKSVSNLQKPTQSISQENTNSVPGGPKSWAQLSGKPVGHEGGLRGSSRLLSFSPEEFPTLKAAGGQDKAGKEKGALDLSYGPGPSLRPQNVTSWREGGGRNIISTTSLNASPTELGSRNSSAGDGAPSSACASESKDPSLRPAQPIRKGASQFMGHTYQPPTYHDMLPAFMCSPQSSENQGMVERSSFPLPQLRLEPRVPFRQFQMNDQEGKERPVLARPVRPLRQLVERAPRPTIINAENLKGLDDLDTDADDGWAGLHEEVDYSEKLKFSDDEEEEEAVKDGRSKWNTWDPRRQRELSLSSADSADAKRTQEEGKDWGEAASVSRGVRKVPEPPPPSRKLHSWPAGPDYQKPSMGSIFRQHSVEDKEDKPPPRQKFIQSEMSEAVERARKRREEEERRAREERLAACAAKLKQLDQKCKQAQKASEAPKPVEKEVPRSPGIEKVSPQENGPVVRKGSPEFPVQEAPTMFLEETPAASPAVAQSSSSSSSSAGEEEVREAGSPAQEFSKYQKSLPPRFQRQQQQQQQQQQQQQQQQQQQQQQEQLYKMQHWQPVYPPPSHPQRTFYPHHPQMLGFDPRWMMMPSYMDPRITPTRTPVDFYPSALHPSGLMKPMMPQESLSGTGCHSEDQNCVPSLQERKVTTIDPAPVWSPEGYMALQSKGYSLAHPKSADTLAMDMHVRSPDEALPGGLGCSNGSHSSYALERTPHASSDSPETASKKAEKEAALAAQRAGEQQEEARKQFDLGYGNAIIDNCGSSPGEESEVGAMGGEGFIEVLTKKQRRLLEEERRKKEQAAQVPVKGRGLSSRIPPRFAKKQNSLCLEQGDMAVPGSSLGTEIWESGSQALPVQGAASDSWRKAVTAFSSTEPGTSEQGFKSSQGDSGVDLSAESRESSATSSQRSSPYGTLKPEEMSGPGLVEPKADSHKDQKQSEHKDPDQSPGQSKEHRPGPIGNERSLKNRKGSEGGERLQGAGVPPVNGVEIHVDSVLPVPPIEFGVNPKDSDFSLPPGSASGPVGNPVAKLQDVLASNAGLTQSIPILRRDHHIQRAIGLSPMSFPTADLTLKMESARKAWENSPSLPEQSSPGGAGSGIQPPSSVGASNGVNYSSFGGVSMPPMPVASVAPSASMPGNHLPPLYLDGHVFASQPRLVPQTIPQQQSYQQAATAQQIPISLHTSLQAQAQLGLRGGLPVSQSQEIFSSLQPFRSQVYMHPSLSPPSTMILSGGTALKPPYSAFPGIQPLEMVKPQSGSPYQPMSGSQALVYEGQLGQAAGLGTSQMLDSQLPQLTMPLPRYGSGQQPLILPQSIQLPPGQSLSVGAPRRIPPPGSQPPVLNTSRESAQMELKGFHFADSKQNVPTGGSAPSPQAYRQNEWMKNPAWEP", "length": 1494, "header": "tr|A0A9J7GB93-1|A0A9J7K6T5_CRIGR Computationally mapped isoform of Protein PRRC2B isoform X2 OS=Cricetulus griseus OX=10029 GN=Prrc2b PE=4 SV=1 CANONICAL=A0A9J7K6T5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GCV2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCV2/entry", "sequence": { "sequence": "MSDRLGQITQGKDGKSKYSTLSLFDKYKGRSVGAVRSSVIPRHGLQSLGKVATARRMPPPANLPSLKSENKGNDPNIVIVPKDGTGWANKQDQQDPKSSSVTASQPPESQPQPGLQKSVSNLQKPTQSISQENTNSVPGGPKSWAQLSGKPVGHEGGLRGSSRLLSFSPEEFPTLKAAGGQDKAGKEKGALDLSYGPGPSLRPQNVTSWREGGGRNIISTTSLNASPTELGSRNSSAGDGAPSSACASESKDPSLRPAQPIRKGASQFMGHTYQPPTYHDMLPAFMCSPQSSENQGMVERSSFPLPQLRLEPRVPFRQFQMNDQEGKERPVLARPVRPLRQLVERAPRPTIINAENLKGLDDLDTDADDGWAGLHEEVDYSEKLKFSDDEEEEEAVKDGRSKWNTWDPRRQRELSLSSADSADAKRTQEEGKDWGEAASVSRGVRKVPEPPPPSRKLHSWPAGPDYQKPSMGSIFRQHSVEDKEDKPPPRQKFIQSEMSEAVERARKRREEEERRAREERLAACAAKLKQLDQKCKQAQKASEAPKPVEKEVPRSPGIEKVSPQENGPVVRKGSPEFPVQEAPTMFLEETPAASPAVAQSSSSSSSSAGEEEVREAGSPAQEFSKYQKSLPPRFQRQQQQQQQQQQQQQQQQQQQQQQEQLYKMQHWQPVYPPPSHPQRTFYPHHPQMLGFDPRWMMMPSYMDPRITPTRTPVDFYPSALHPSGLMKPMMPQESLSGTGCHSEDQNCVPSLQERKVTTIDPAPVWSPEGYMALQSKGYSLAHPKSADTLAMDMHVRNERSYSASPGRSGGISAQRDLFEERGEEYLSAFDKKAQADFDSCISSQRIGQELLFPPQENVQEVGAPGGRTPNLRCSPLEPDFVPAEKKPEYGSWDVGHQPKAADTANSVELEAPREEPSFHVPSWEKEGSPKKQPNPEPDWTPEPRSQHQEHPGRTRRSGPIKKPVLKALKIEEKEKALERVRQGLGEESSQLAVDKEPMCRAEEDEDEENNPALANASSSALEDKAAVRPGFGHEANKLDEDAKSDKTWESRPSREASDIPPTKRNNWIFIDEEQAFGGRGQARSRGRGFREFTFRGSRPAGSNTSGLGGAGVLGARSMYSSGHRSSRGRGLRDFPLPEDCPRAKPRRRIASETHSEGSEYEELPKRRRQRGSEPGHEGMLLERDEGALKKDSWRSNRTYTEDQGGPDARSRGARPCGRALPPRLSNCSYGRRSFVAKEPPHWQSRSPGSSWQEYGPSDPCGPRRATDRDYIPESYRHTDTFGSRVFEDSRMEDKRSFFQDDHGADSENAENRPFRRRRPPRQDKPPRFRRLRQERESLGLWGPEEESHLLASQWPGRSKLCPGDKNGPGDHRSPELSYQNSSDHANEEWETASESSDFSERRERREGLTAEPEAQGDGGLSGASLGEKKELAKRSFSSQRPLADRQSRKLEPGGFGEKPVRPGGGETSPRCESQQSGTPLKVKRSPDEALPGGLGCSNGSHSSYALERTPHASSDSPETASKKAEKEAALAAQRAGEQQEEARKQFDLGYGNAIIDNCGSSPGEESEVGAMGGEGFIEVLTKKQRRLLEEERRKKEQAAQVPVKGRGLSSRIPPRFAKKQNSLCLEQGDMAVPGSSLGTEIWESGSQALPVQGAASDSWRKAVTAFSSTEPGTSEQGFKSSQGDSGVDLSAESRESSATSSQRSSPYGTLKPEEMSGPGLVEPKADSHKDQKQSEHKDPDQSPGQSKEHRPGPIGNERSLKNRKGSEGGERLQGAGVPPVNGVEIHVDSVLPVPPIEFGVNPKDSDFSLPPGSASGPVGNPVAKLQDVLASNAGLTQSIPILRRDHHIQRAIGLSPMSFPTADLTLKMESARKAWENSPSLPEQSSPGGAGSGIQPPSSVGASNGVNYSSFGGVSMPPMPVASVAPSASMPGNHLPPLYLDGHVFASQPRLVPQTIPQQQSYQQAATAQQIPISLHTSLQAQAQLGLRGGLPVSQSQEIFSSLQPFRSQVYMHPSLSPPSTMILSGGTALKPPYSAFPGIQPLEMVKPQSGSPYQPMSGSQALVYEGQLGQAAGLGTSQMLDSQLPQLTMPLPRYGSGQQPLILPQSIQLPPGQSLSVGAPRRIPPPGSQPPVLNTSRESAQMELKGFHFADSKQNVPTGGSAPSPQAYRQNEWMKNPAWEP", "length": 2182, "header": "tr|A0A9J7GCV2-1|A0A9J7K6T5_CRIGR Computationally mapped isoform of Protein PRRC2B isoform X2 OS=Cricetulus griseus OX=10029 GN=Prrc2b PE=4 SV=1 CANONICAL=A0A9J7K6T5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H1X3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1X3/entry", "sequence": { "sequence": "MSDRLGQITQGKDGKSKYSTLSLFDKYKGRSVGAVRSSVIPRHGLQSLGKVATARRMPPPANLPSLKSENKGNDPNIVIVPKDGTGWANKQDQQDPKSSSVTASQPPESQPQPGLQKSVSNLQKPTQSISQENTNSVPGGPKSWAQLSGKPVGHEGGLRGSSRLLSFSPEEFPTLKAAGGQDKAGKEKGALDLSYGPGPSLRPQKLGSRNSSAGDGAPSSACASESKDPSLRPAQPIRKGASQFMGHTYQPPTYHDMLPAFMCSPQSSENQGMVERSSFPLPQLRLEPRVPFRQFQMNDQEGKERPVLARPVRPLRQLVERAPRPTIINAENLKGLDDLDTDADDGWAGLHEEVDYSEKLKFSDDEEEEEAVKDGRSKWNTWDPRRQRELSLSSADSADAKRTQEEGKDWGEAASVSRGVRKVPEPPPPSRKLHSWPAGPDYQKPSMGSIFRQHSVEDKEDKPPPRQKFIQSEMSEAVERARKRREEEERRAREERLAACAAKLKQLDQKCKQAQKASEAPKPVEKEVPRSPGIEKVSPQENGPVVRKGSPEFPVQEAPTMFLEETPAASPAVAQSSSSSSSSAGEEEVREAGSPAQEFSKYQKSLPPRFQRQQQQQQQQQQQQQQQQQQQQQQEQLYKMQHWQPVYPPPSHPQRTFYPHHPQMLGFDPRWMMMPSYMDPRITPTRTPVDFYPSALHPSGLMKPMMPQESLSGTGCHSEDQNCVPSLQERKVTTIDPAPVWSPEGYMALQSKGYSLAHPKSADTLAMDMHVRNERSYSASPGRSGGISAQRDLFEERGEEYLSAFDKKAQADFDSCISSQRIGQELLFPPQENVQEVGAPGGRTPNLRCSPLEPDFVPAEKKPEYGSWDVGHQPKAADTANSVELEAPREEPSFHVPSWEKEGSPKKQPNPEPDWTPEPRSQHQEHPGRTRRSGPIKKPVLKALKIEEKEKALERVRQGLGEESSQLAVDKEPMCRAEEDEDEENNPALANASSSALEDKAAVRPGFGHEANKLDEDAKSDKTWESRPSREASDIPPTKRNNWIFIDEEQAFGGRGQARSRGRGFREFTFRGSRPAGSNTSGLGGAGVLGARSMYSSGHRSSRGRGLRDFPLPEDCPRAKPRRRIASETHSEGSEYEELPKRRRQRGSEPGHEGMLLERDEGALKKDSWRSNRTYTEDQGGPDARSRGARPCGRALPPRLSNCSYGRRSFVAKEPPHWQSRSPGSSWQEYGPSDPCGPRRATDRDYIPESYRHTDTFGSRVFEDSRMEDKRSFFQDDHGADSENAENRPFRRRRPPRQDKPPRFRRLRQERESLGLWGPEEESHLLASQWPGRSKLCPGDKNGPGDHRSPELSYQNSSDHANEEWETASESSDFSERRERREGLTAEPEAQGDGGLSGASLGEKKELAKRSFSSQRPLADRQSRKLEPGGFGEKPVRPGGGETSPRCESQQSGTPLKVKRSPDEALPGGLGCSNGSHSSYALERTPHASSDSPETASKKAEKEAALAAQRAGEQQEEARKQFDLGYGNAIIDNCGSSPGEESEVGAMGGEGFIEVLTKKQRRLLEEERRKKEQAAQVPVKGRGLSSRIPPRFAKKQNSLCLEQGDMAVPGSSLGTEIWESGSQALPVQGAASDSWRKAVTAFSSTEPGTSEQGFKSSQGDSGVDLSAESRESSATSSQRSSPYGTLKPEEMSGPGLVEPKADSHKDQKQSEHKDPDQSPGQSKEHRPGPIGNERSLKNRKGSEGGERLQGAGVPPVNGVEIHVDSVLPVPPIEFGVNPKDSDFSLPPGSASGPVGNPVAKLQDVLASNAGLTQSIPILRRDHHIQRAIGLSPMSFPTADLTLKMESARKAWENSPSLPEQSSPGGAGSGIQPPSSVGASNGVNYSSFGGVSMPPMPVASVAPSASMPGNHLPPLYLDGHVFASQPRLVPQTIPQQQSYQQAATAQQIPISLHTSLQAQAQLGLRGGLPVSQSQEIFSSLQPFRSQVYMHPSLSPPSTMILSGGTALKPPYSAFPGIQPLEMVKPQSGSPYQPMSGSQALVYEGQLGQAAGLGTSQMLDSQLPQLTMPLPRYGSGQQPLILPQSIQLPPGQSLSVGAPRRIPPPGSQPPVLNTSRESAQMELKGFHFADSKQNVPTGGSAPSPQAYRPSSASPSGKPSGSAVNMGSVQGHYVQQAKRMDEKPSLGTVKLQEASSATSQMKRTGAIKPRAVKVEESKA", "length": 2216, "header": "tr|A0A9J7H1X3-1|A0A9J7H1X3_CRIGR Computationally mapped isoform of Protein PRRC2B isoform X4 OS=Cricetulus griseus OX=10029 GN=Prrc2b PE=4 SV=1 CANONICAL=A0A9J7K6T5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JWS7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWS7/entry", "sequence": { "sequence": "MSDRLGQITQGKDGKSKYSTLSLFDKYKGRSVGAVRSSVIPRHGLQSLGKVATARRMPPPANLPSLKSENKGNDPNIVIVPKDGTGWANKQDQQDPKSSSVTASQPPESQPQPGLQKSVSNLQKPTQSISQENTNSVPGGPKSWAQLSGKPVGHEGGLRGSSRLLSFSPEEFPTLKAAGGQDKAGKEKGALDLSYGPGPSLRPQNVTSWREGGGRNIISTTSLNASPTELGSRNSSAGDGAPSSACASESKDPSLRPAQPIRKGASQFMGHTYQPPTYHDMLPAFMCSPQSSENQGMVERSSFPLPQLRLEPRVPFRQFQMNDQEGKERPVLARPVRPLRQLVERAPRPTIINAENLKGLDDLDTDADDGWAGLHEEVDYSEKLKFSDDEEEEEAVKDGRSKWNTWDPRRQRELSLSSADSADAKRTQEEGKDWGEAASVSRGVRKVPEPPPPSRKLHSWPAGPDYQKPSMGSIFRQHSVEDKEDKPPPRQKFIQSEMSEAVERARKRREEEERRAREERLAACAAKLKQLDQKCKQAQKASEAPKPVEKEVPRSPGIEKVSPQENGPVVRKGSPEFPVQEAPTMFLEETPAASPAVAQSSSSSSSSAGEEEVREAGSPAQEFSKYQKSLPPRFQRQQQQQQQQQQQQQQQQQQQQQQEQLYKMQHWQPVYPPPSHPQRTFYPHHPQMLGFDPRWMMMPSYMDPRITPTRTPVDFYPSALHPSGLMKPMMPQESLSGTGCHSEDQNCVPSLQERKVTTIDPAPVWSPEGYMALQSKGYSLAHPKSADTLAMDMHVRNERSYSASPGRSGGISAQRDLFEERGEEYLSAFDKKAQADFDSCISSQRIGQELLFPPQENVQEVGAPGGRTPNLRCSPLEPDFVPAEKKPEYGSWDVGHQPKAADTANSVELEAPREEPSFHVPSWEKEGSPKKQPNPEPDWTPEPRSQHQEHPGRTRRSGPIKKPVLKALKIEEKEKALERVRQGLGEESSQLAVDKEPMCRAEEDEDEENNPALANASSSALEDKAAVRPGFGHEANKLDEDAKSDKTWESRPSREASDIPPTKRNNWIFIDEEQAFGGRGQARSRGRGFREFTFRGSRPAGSNTSGLGGAGVLGARSMYSSGHRSSRGRGLRDFPLPEDCPRAKPRRRIASETHSEGSEYEELPKRRRQRGSEPGHEGMLLERDEGALKKDSWRSNRTYTEDQGGPDARSRGARPCGRALPPRLSNCSYGRRSFVAKEPPHWQSRSPGSSWQEYGPSDPCGPRRATDRDYIPESYRHTDTFGSRVFEDSRMEDKRSFFQDDHGADSENAENRPFRRRRPPRQDKPPRFRRLRQERESLGLWGPEEESHLLASQWPGRSKLCPGDKNGPGDHRSPELSYQNSSDHANEEWETASESSDFSERRERREGLTAEPEAQGDGGLSGASLGEKKELAKRSFSSQRPLADRQSRKLEPGGFGEKPVRPGGGETSPRCESQQSGTPLKVKRSPDEALPGGLGCSNGSHSSYALERTPHASSDSPETASKKAEKEAALAAQRAGEQQEEARKQFDLGYGNAIIDNCGSSPGEESEVGAMGGEGFIEVLTKKQRRLLEEERRKKEQAAQVPVKGRGLSSRIPPRFAKKQNSLCLEQGDMAVPGSSLGTEIWESGSQALPVQGAASDSWRKAVTAFSSTEPGTSEQGFKSSQGDSGVDLSAESRESSATSSQRSSPYGTLKPEEMSGPGLVEPKADSHKDQKQSEHKDPDQSPGQSKEHRPGPIGNERSLKNRKGSEGGERLQGAGVPPVNGVEIHVDSVLPVPPIEFGVNPKDSDFSLPPGSASGPVGNPVAKLQDVLASNAGLTQSIPILRRDHHIQRAIGLSPMSFPTADLTLKMESARKAWENSPSLPEQSSPGGAGSGIQPPSSVGASNGVNYSSFGGVSMPPMPVASVAPSASMPGNHLPPLYLDGHVFASQPRLVPQTIPQQQSYQQAATAQQIPISLHTSLQAQAQLGLRGGLPVSQSQEIFSSLQPFRSQVYMHPSLSPPSTMILSGGTALKPPYSAFPGIQPLEMVKPQSGSPYQPMSGSQALVYEGQLGQAAGLGTSQMLDSQLPQLTMPLPRYGSGQQPLILPQSIQLPPGQSLSVGAPRRIPPPGSQPPVLNTSREAKRMDEKPSLGTVKLQEASSATSQMKRTGAIKPRAVKVEESKA", "length": 2182, "header": "tr|A0A9J7JWS7-1|A0A9J7K6T5_CRIGR Computationally mapped isoform of Protein PRRC2B isoform X2 OS=Cricetulus griseus OX=10029 GN=Prrc2b PE=4 SV=1 CANONICAL=A0A9J7K6T5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JZE4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZE4/entry", "sequence": { "sequence": "MSDRLGQITQGKDGKSKYSTLSLFDKYKGRSVGAVRSSVIPRHGLQSLGKVATARRMPPPANLPSLKSENKGNDPNIVIVPKDGTGWANKQDQQDPKSSSVTASQPPESQPQPGLQKSVSNLQKPTQSISQENTNSVPGGPKSWAQLSGKPVGHEGGLRGSSRLLSFSPEEFPTLKAAGGQDKAGKEKGALDLSYGPGPSLRPQNVTSWREGGGRNIISTTSLNASPTELGSRNSSAGDGAPSSACASESKDPSLRPAQPIRKGASQFMGHTYQPPTYHDMLPAFMCSPQSSENQGMVERSSFPLPQLRLEPRVPFRQFQMNDQEGKERPVLARPVRPLRQLVERAPRPTIINAENLKGLDDLDTDADDGWAGLHEEVDYSEKLKFSDDEEEEEAVKDGRSKWNTWDPRRQRELSLSSADSADAKRTQEEGKDWGEAASVSRGVRKVPEPPPPSRKLHSWPAGPDYQKPSMGSIFRQHSVEDKEDKPPPRQKFIQSEMSEAVERARKRREEEERRAREERLAACAAKLKQLDQKCKQAQKASEAPKPVEKEVPRSPGIEKVSPQENGPVVRKGSPEFPVQEAPTMFLEETPAASPAVAQSSSSSSSSAGEEEVREAGSPAQEFSKYQKSLPPRFQRQQQQQQQQQQQQQQQQQQQQQQEQLYKMQHWQPVYPPPSHPQRTFYPHHPQMLGFDPRWMMMPSYMDPRITPTRTPVDFYPSALHPSGLMKPMMPQESLSGTGCHSEDQNCVPSLQERKVTTIDPAPVWSPEGYMALQSKGYSLAHPKSADTLAMDMHVRNERSYSASPGRSGGISAQRDLFEERGEEYLSAFDKKAQADFDSCISSQRIGQELLFPPQENVQEVGAPGGRTPNLRCSPLEPDFVPAEKKPEYGSWDVGHQPKAADTANSVELEAPREEPSFHVPSWEKEGSPKKQPNPEPDWTPEPRSQHQEHPGRTRRSGPIKKPVLKALKIEEKEKALERVRQGLGEESSQLAVDKEPMCRAEEDEDEENNPALANASSSALEDKAAVRPGFGHEANKLDEDAKSDKTWESRPSREASDIPPTKRNNWIFIDEEQAFGGRGQARSRGRGFREFTFRGSRPAGSNTSGLGGAGVLGARSMYSSGHRSSRGRGLRDFPLPEDCPRAKPRRRIASETHSEGSEYEELPKRRRQRGSEPGHEGMLLERDEGALKKDSWRSNRTYTEDQGGPDARSRGARPCGRALPPRLSNCSYGRRSFVAKEPPHWQSRSPGSSWQEYGPSDPCGPRRATDRDYIPESYRHTDTFGSRVFEDSRMEDKRSFFQDDHGADSENAENRPFRRRRPPRQDKPPRFRRLRQERESLGLWGPEEESHLLASQWPGRSKLCPGDKNGPGDHRSPELSYQNSSDHANEEWETASESSDFSERRERREGLTAEPEAQGDGGLSGASLGEKKELAKRSFSSQRPLADRQSRKLEPGGFGEKPVRPGGGETSPRCESQQSGTPLKVKRSPDEALPGGLGCSNGSHSSYALERTPHASSDSPETASKKAEKEAALAAQRAGEQQEEARKQFDLGYGNAIIDNCGSSPGEESEVGAMGGEGFIEVLTKKQRRLLEEERRKKEQAAQVPVKGRGLSSRIPPRFAKKQNSLCLEQGDMAVPGSSLGTEIWESGSQALPVQGAASDSWRKAVTAFSSTEPGTSEQGFKSSQGDSGVDLSAESRESSATSSQRSSPYGTLKPEEMSGPGLVEPKADSHKDQKQSEHKDPDQSPGQSKEHRPGPIGNERSLKNRKGSEGGERLQGAGVPPVNGVEIHVDSVLPVPPIEFGVNPKDSDFSLPPGSASGPVGNPVAKLQDVLASNAGLTQSIPILRRDHHIQRAIGLSPMSFPTADLTLKMESARKAWENSPSLPEQSSPGGAGSGIQPPSSVGASNGVNYSSFGGVSMPPMPVASVAPSASMPGNHLPPLYLDGHVFASQPRLVPQTIPQQQSYQQSPEEAIRSSGPELTAIWMLRTEPRSSARTKYF", "length": 1996, "header": "tr|A0A9J7JZE4-1|A0A9J7JZE4_CRIGR Computationally mapped isoform of Protein PRRC2B isoform X7 OS=Cricetulus griseus OX=10029 GN=Prrc2b PE=4 SV=1 CANONICAL=A0A9J7K6T5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K6T5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K6T5/entry", "sequence": { "sequence": "MSDRLGQITQGKDGKSKYSTLSLFDKYKGRSVGAVRSSVIPRHGLQSLGKVATARRMPPPANLPSLKSENKGNDPNIVIVPKDGTGWANKQDQQDPKSSSVTASQPPESQPQPGLQKSVSNLQKPTQSISQENTNSVPGGPKSWAQLSGKPVGHEGGLRGSSRLLSFSPEEFPTLKAAGGQDKAGKEKGALDLSYGPGPSLRPQNVTSWREGGGRNIISTTSLNASPTELGSRNSSAGDGAPSSACASESKDPSLRPAQPIRKGASQFMGHTYQPPTYHDMLPAFMCSPQSSENQGMVERSSFPLPQLRLEPRVPFRQFQMNDQEGKERPVLARPVRPLRQLVERAPRPTIINAENLKGLDDLDTDADDGWAGLHEEVDYSEKLKFSDDEEEEEAVKDGRSKWNTWDPRRQRELSLSSADSADAKRTQEEGKDWGEAASVSRGVRKVPEPPPPSRKLHSWPAGPDYQKPSMGSIFRQHSVEDKEDKPPPRQKFIQSEMSEAVERARKRREEEERRAREERLAACAAKLKQLDQKCKQAQKASEAPKPVEKEVPRSPGIEKVSPQENGPVVRKGSPEFPVQEAPTMFLEETPAASPAVAQSSSSSSSSAGEEEVREAGSPAQEFSKYQKSLPPRFQRQQQQQQQQQQQQQQQQQQQQQQEQLYKMQHWQPVYPPPSHPQRTFYPHHPQMLGFDPRWMMMPSYMDPRITPTRTPVDFYPSALHPSGLMKPMMPQESLSGTGCHSEDQNCVPSLQERKVTTIDPAPVWSPEGYMALQSKGYSLAHPKSADTLAMDMHVRNERSYSASPGRSGGISAQRDLFEERGEEYLSAFDKKAQADFDSCISSQRIGQELLFPPQENVQEVGAPGGRTPNLRCSPLEPDFVPAEKKPEYGSWDVGHQPKAADTANSVELEAPREEPSFHVPSWEKEGSPKKQPNPEPDWTPEPRSQHQEHPGRTRRSGPIKKPVLKALKIEEKEKALERVRQGLGEESSQLAVDKEPMCRAEEDEDEENNPALANASSSALEDKAAVRPGFGHEANKLDEDAKSDKTWESRPSREASDIPPTKRNNWIFIDEEQAFGGRGQARSRGRGFREFTFRGSRPAGSNTSGLGGAGVLGARSMYSSGHRSSRGRGLRDFPLPEDCPRAKPRRRIASETHSEGSEYEELPKRRRQRGSEPGHEGMLLERDEGALKKDSWRSNRTYTEDQGGPDARSRGARPCGRALPPRLSNCSYGRRSFVAKEPPHWQSRSPGSSWQEYGPSDPCGPRRATDRDYIPESYRHTDTFGSRVFEDSRMEDKRSFFQDDHGADSENAENRPFRRRRPPRQDKPPRFRRLRQERESLGLWGPEEESHLLASQWPGRSKLCPGDKNGPGDHRSPELSYQNSSDHANEEWETASESSDFSERRERREGLTAEPEAQGDGGLSGASLGEKKELAKRSFSSQRPLADRQSRKLEPGGFGEKPVRPGGGETSPRCESQQSGTPLKVKRSPDEALPGGLGCSNGSHSSYALERTPHASSDSPETASKKAEKEAALAAQRAGEQQEEARKQFDLGYGNAIIDNCGSSPGEESEVGAMGGEGFIEVLTKKQRRLLEEERRKKEQAAQVPVKGRGLSSRIPPRFAKKQNSLCLEQGDMAVPGSSLGTEIWESGSQALPVQGAASDSWRKAVTAFSSTEPGTSEQGFKSSQGDSGVDLSAESRESSATSSQRSSPYGTLKPEEMSGPGLVEPKADSHKDQKQSEHKDPDQSPGQSKEHRPGPIGNERSLKNRKGSEGGERLQGAGVPPVNGVEIHVDSVLPVPPIEFGVNPKDSDFSLPPGSASGPVGNPVAKLQDVLASNAGLTQSIPILRRDHHIQRAIGLSPMSFPTADLTLKMESARKAWENSPSLPEQSSPGGAGSGIQPPSSVGASNGVNYSSFGGVSMPPMPVASVAPSASMPGNHLPPLYLDGHVFASQPRLVPQTIPQQQSYQQAATAQQIPISLHTSLQAQAQLGLRGGLPVSQSQEIFSSLQPFRSQVYMHPSLSPPSTMILSGGTALKPPYSAFPGIQPLEMVKPQSGSPYQPMSGSQALVYEGQLGQAAGLGTSQMLDSQLPQLTMPLPRYGSGQQPLILPQSIQLPPGQSLSVGAPRRIPPPGSQPPVLNTSRESAQMELKGFHFADSKQNVPTGGSAPSPQAYRPSSASPSGKPSGSAVNMGSVQGHYVQQAKRMDEKPSLGTVKLQEASSATSQMKRTGAIKPRAVKVEESKA", "length": 2240, "header": "tr|A0A9J7K6T5-1|A0A9J7K6T5_CRIGR Isoform 1 of Protein PRRC2B isoform X2 OS=Cricetulus griseus OX=10029 GN=Prrc2b PE=4 SV=1 CANONICAL=A0A9J7K6T5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G8A3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G8A3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G8A3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G8A3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100755319", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755319", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K6T5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K6T5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1015, "end_pos": 1017, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1103, "end_pos": 1105, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1196, "end_pos": 1198, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1226, "end_pos": 1228, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1380, "end_pos": 1382, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1498, "end_pos": 1500, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1907, "end_pos": 1909, "annotation": "n_glycosylation_sequon" }, { "start_pos": 205, "end_pos": 207, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2135, "end_pos": 2137, "annotation": "n_glycosylation_sequon" }, { "start_pos": 224, "end_pos": 226, "annotation": "n_glycosylation_sequon" }, { "start_pos": 234, "end_pos": 236, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7K6T5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K6T5" }, { "id": "PF07001", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07001" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BAT2 N-terminal", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 189, "start_aa": "Met", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1015, "end_pos": 1017 }, { "start_pos": 1103, "end_pos": 1105 }, { "start_pos": 1196, "end_pos": 1198 }, { "start_pos": 1226, "end_pos": 1228 }, { "start_pos": 1380, "end_pos": 1382 }, { "start_pos": 1498, "end_pos": 1500 }, { "start_pos": 1907, "end_pos": 1909 }, { "start_pos": 205, "end_pos": 207 }, { "start_pos": 2135, "end_pos": 2137 }, { "start_pos": 224, "end_pos": 226 }, { "start_pos": 234, "end_pos": 236 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { 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This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027280571", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027280571" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JXD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXD5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Snx29", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXD5", "locus": {} } ], "crossref": [ { "id": "A0A9J7JXD5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JXD5", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd07277", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07277", "database": "CDD", "categories": [ "Protein Classification" ] }, 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"PF02759", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02759", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027280571", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027280571", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GCG2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GCG2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCG2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JXD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXD5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JXD5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXD5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K0C4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0C4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K0C4-1", "url": 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"tr|A0A9J7JXD5-1|A0A9J7JXD5_CRIGR Isoform 1 of Sorting nexin-29 isoform X1 OS=Cricetulus griseus OX=10029 GN=Snx29 PE=4 SV=1 CANONICAL=A0A9J7JXD5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GCG2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCG2/entry", "sequence": { "sequence": 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CANONICAL=A0A9J7JXD5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JXD5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXD5/entry", "sequence": { "sequence": "MTEGCSATLIGGSQNDDKRQFLLERLLDAVKQCQIRFGGRKEIASDSDSRVTCLCAQFEAVLQHGMKRSRGLALTAAAIKQAAGFASKTETEPVFWFYVKEVLNKHELQRFYSLHHITADVGRGRAWLRCALNEHSLERYLHMLLADRARLSTFYEDWSFVMDEERSSMLPTMAAGLNSILFAINIDNKDLNGQSKFAPTVSDLLKESTQNVTSLLKESTQGMSSLLREITASSAVSILIKPEQETDPLPVISKNVNVDARCKRERRRRKKVTNIVSFDDDDDEPNIGDTLKKIPGTVESSSINIMSTFESPFGPNSNGSQSSNSWKLDSASLNGESGYQKLDVKSIDDDVDENEEDVYRNSAGRKHTGHSESPDKPLDGNVCLPQVHGWAPLQVLHGDADADTDVLFPVSGVGSYVAADAPVGSLENGTGPDDHVLPEPGLRYSMEASSPGRGSPLSSLLPSASMPESMTVHELRQAIVAMMNRKDELEEENGSLRNLLDGEMEHSAALRQEVDALKRKVTEQQERHTTKVQALARENEVLKVQLKKYVGAVQMLKREGQTAEVVPSLWNVDGEVTVPEQKPGEVAEELASSYERKLIEVAEMHGELIEFNERLHRALVAKEALVSQMRQELIDLRGPVPGDLSQTSEDQSLSDFEISNRALINVWIPSVFLRGKAANAFHVYQVYIRIKDDEWNVYRRYTEFRALHHQLQNTFPQVRAYNFPPKKAIGNKDAKFVEERRKQLQSYLRSVMNKVIQMVPEFAANPKKETLVQLVPFLVDVSPPGEPLNKNNRPKVVSRFPKLSRGHPREMRNVEPQSGDL", "length": 821, "header": "tr|A0A9J7JXD5-1|A0A9J7JXD5_CRIGR Isoform 1 of Sorting nexin-29 isoform X1 OS=Cricetulus griseus OX=10029 GN=Snx29 PE=4 SV=1 CANONICAL=A0A9J7JXD5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K0C4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0C4/entry", "sequence": { "sequence": "MKRSRGLALTAAAIKQAAGFASKTETEPVFWFYVKEVLNKHELQRFYSLHHITADVGRGRAWLRCALNEHSLERYLHMLLADRARLSTFYEDWSFVMDEERSSMLPTMAAGLNSILFAINIDNKDLNGQSKFAPTVSDLLKESTQNVTSLLKESTQGMSSLLREITASSAVSILIKPEQETDPLPVISKNVNVDARCKRERRRRKKVTNIVSFDDDDDEPNIGDTLKKIPGTVESSSINIMSTFESPFGPNSNGSQSSNSWKLDSASLNGESGYQKLDVKSIDDDVDENEEDVYRNSAGRKHTGHSESPDKPLDGNVCLPQVHGWAPLQVLHGDADADTDVLFPVSGVGSYVAADAPVGSLENGTGPDDHVLPEPGLRYSMEASSPGRGSPLSSLLPSASMPESMTVHELRQAIVAMMNRKDELEEENGSLRNLLDGEMEHSAALRQEVDALKRKVTEQQERHTTKVQALARENEVLKVQLKKYVGAVQMLKREGQTAEVVPSLWNVDGEVTVPEQKPGEVAEELASSYERKLIEVAEMHGELIEFNERLHRALVAKEALVSQMRQELIDLRGPVPGDLSQTSEDQSLSDFEISNRALINVWIPSVFLRGKAANAFHVYQVYIRIKDDEWNVYRRYTEFRALHHQLQNTFPQVRAYNFPPKKAIGNKDAKFVEERRKQLQSYLRSVMNKVIQMVPEFAANPKKETLVQLVPFLVDVSPPGEPLNKNNRPKVVSRFPKLSRGHPREMRNVEPQSGDL", "length": 756, "header": "tr|A0A9J7K0C4-1|A0A9J7K0C4_CRIGR Computationally mapped isoform of Sorting nexin-29 isoform X3 OS=Cricetulus griseus OX=10029 GN=Snx29 PE=4 SV=1 CANONICAL=A0A9J7JXD5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GCG2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCG2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GCG2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCG2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100753883", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753883", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "phosphatidylinositol binding", "id": "GO:0035091", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035091", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JXD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXD5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 211, "end_pos": 213, "annotation": "n_glycosylation_sequon" }, { "start_pos": 318, "end_pos": 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This record is derived from a genomic sequence (NC_048601.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027284111", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027284111" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JZV0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZV0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Iffo1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZV0", "locus": {} } ], "crossref": [ { "id": "A0A9J7JZV0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JZV0", "database": "AlphaFoldDB", "categories": [] }, { "id": "100753382", "url": "https://www.ncbi.nlm.nih.gov/gene/100753382", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR039008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100753382", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753382", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JZV0", "url": "https://www.orthodb.org/?gene=A0A9J7JZV0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14516", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14516", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14516:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14516:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00038", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00038", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027284111", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027284111", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GEA3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEA3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GEA3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEA3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GEA5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEA5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GEA5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEA5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GFD6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFD6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GFD6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFD6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GIV2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIV2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GIV2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIV2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JQH3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQH3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JQH3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQH3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JY77", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JY77", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JY77-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JY77-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JZS2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZS2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JZS2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZS2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JZV0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZV0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JZV0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZV0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNPLFGPNLFLLQQEQQGLAGPLGDPLGGDHFAGGGDLPPAPLASVGPAAYSPPGPGPAPPAAMALRNDLGSNINVLKTLNLRFRCFLAKVHELERRNRLLEKQLQQALEEGKQGRRGLARRDQAVQTGFISPIRPLGLPLSSRPAAVCPPSARVLGSPARSPAGPLASSAACQSSSSTSTSTSTSTAFSSSTRFMPGTIWSYSHARRLGPGLEPTLVQGPGLSWVHPDGVGVQIDTITPEIRALYNVLAKVKRERDEYKRRWEEEYTVRIQLQERVNELQEEAQEADACQEELAMKVEQLKAELVVFKGLMSNNLTELDTKIQEKAMKVDMDICRRIDITAKLCDLAQQRNCEDMIQMFQKKLSLHLSPIKVPAMGGRKRERKAAVEEDTSLSESDGPRQPEGDEEESTALSINEEMQRMLSQLREYDFEDDCDSLTWEETEETLLLWEDFSGYAMAATEAQGEQQEDSLEKVIKDTESLFKTREKEYQETIDQIELELATAKNDMNRHLHEYMEMCSMKRGLDVQMETCRRLITQSGDRKSPAFTAVPLSDPPPAPSETEDSDCHVSSDSSMR", "length": 575, "header": "tr|A0A9J7JZV0-1|A0A9J7JZV0_CRIGR Isoform 1 of Intermediate filament family orphan 1 isoform X8 OS=Cricetulus griseus OX=10029 GN=Iffo1 PE=4 SV=1 CANONICAL=A0A9J7JZV0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GEA3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEA3/entry", "sequence": { "sequence": "MNPLFGPNLFLLQQEQQGLAGPLGDPLGGDHFAGGGDLPPAPLASVGPAAYSPPGPGPAPPAAMALRNDLGSNINVLKTLNLRFRCFLAKVHELERRNRLLEKQLQQALEEGKQGRRGLARRDQAVQTGFISPIRPLGLPLSSRPAAVCPPSARVLGSPARSPAGPLASSAACQSSSSTSTSTSTSTAFSSSTRFMPGTIWSYSHARRLGPGLEPTLVQGPGLSWVHPDGVGVQIDTITPEIRALYNVLAKVKRERDEYKRRWEEEYTVRIQLQERVNELQEEAQEADACQEELAMKVEQLKAELVVFKGLMSNNLTELDTKIQEKAMKVDMDICRRIDITAKLCDLAQQRNCEDMIQMFQVPAMGGRKRERKAAVEEDTSLSESDGPRQPEGDEEESTALSINEEMQRMLSQLREYDFEDDCDSLTWEETEETLLLWEDFSGYAMAATEAQGEQQQEDSLEKVIKDTESLFKTREKEYQETIDQIELELATAKNDMNRHLHEYMEMCSMKRGLDVQMETCRRLITQSGDRKSPAFTAVPLSDPPPAPSETEDSDCHVSSDSSMR", "length": 565, "header": "tr|A0A9J7GEA3-1|A0A9J7JZV0_CRIGR Computationally mapped isoform of Intermediate filament family orphan 1 isoform X8 OS=Cricetulus griseus OX=10029 GN=Iffo1 PE=4 SV=1 CANONICAL=A0A9J7JZV0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GEA5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEA5/entry", "sequence": { "sequence": "MNPLFGPNLFLLQQEQQGLAGPLGDPLGGDHFAGGGDLPPAPLASVGPAAYSPPGPGPAPPAAMALRNDLGSNINVLKTLNLRFRCFLAKVHELERRNRLLEKQLQQALEEGKQGRRGLARRDQAVQTGFISPIRPLGLPLSSRPAAVCPPSARVLGSPARSPAGPLASSAACQSSSSTSTSTSTSTAFSSSTRFMPGTIWSYSHARRLGPGLEPTLVQGPGLSWVHPDGVGVQIDTITPEIRALYNVLAKVKRERDEYKRRWEEEYTVRIQLQERVNELQEEAQEADACQEELAMKVEQLKAELVVFKGLMSNNLTELDTKIQEKAMKVDMDICRRIDITAKLCDLAQQRNCEDMIQMFQKKLVPAMGGRKRERKAAVEEDTSLSESDGPRQPEGDEEESTALSINEEMQRMLSQLREYDFEDDCDSLTWEETEETLLLWEDFSGYAMAATEAQGEQQQEDSLEKVIKDTESLFKTREKEYQETIDQIELELATAKNDMNRHLHEYMEMCSMKRGLDVQMETCRRLITQSGDRLLLSLRSRLATRRQRQAKLRTPIAMSHLIAP", "length": 565, "header": "tr|A0A9J7GEA5-1|A0A9J7JZV0_CRIGR Computationally mapped isoform of Intermediate filament family orphan 1 isoform X8 OS=Cricetulus griseus OX=10029 GN=Iffo1 PE=4 SV=1 CANONICAL=A0A9J7JZV0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GFD6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFD6/entry", "sequence": { "sequence": "MNPLFGPNLFLLQQEQQGLAGPLGDPLGGDHFAGGGDLPPAPLASVGPAAYSPPGPGPAPPAAMALRNDLGSNINVLKTLNLRFRCFLAKVHELERRNRLLEKQLQQALEEGKQGRRGLARRDQAVQTGFISPIRPLGLPLSSRPAAVCPPSARVLGSPARSPAGPLASSAACQSSSSTSTSTSTSTAFSSSTRFMPGTIWSYSHARRLGPGLEPTLVQGPGLSWVHPDGVGVQIDTITPEIRALYNVLAKVKRERDEYKRRWEEEYTVRIQLQERVNELQEEAQEADACQEELAMKVEQLKAELVVFKGLMSNNLTELDTKIQEKAMKVDMDICRRIDITAKLCDLAQQRNCEDMIQMFQKLVPAMGGRKRERKAAVEEDTSLSESDGPRQPEGDEEESTALSINEEMQRMLSQLREYDFEDDCDSLTWEETEETLLLWEDFSGYAMAATEAQGEQQEDSLEKVIKDTESLFKTREKEYQETIDQIELELATAKNDMNRHLHEYMEMCSMKRGLDVQMETCRRLITQSGDRKSPAFTAVPLSDPPPAPSETEDSDCHVSSDSSMR", "length": 566, "header": "tr|A0A9J7GFD6-1|A0A9J7JZV0_CRIGR Computationally mapped isoform of Intermediate filament family orphan 1 isoform X8 OS=Cricetulus griseus OX=10029 GN=Iffo1 PE=4 SV=1 CANONICAL=A0A9J7JZV0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GIV2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIV2/entry", "sequence": { "sequence": "MNPLFGPNLFLLQQEQQGLAGPLGDPLGGDHFAGGGDLPPAPLASVGPAAYSPPGPGPAPPAAMALRNDLGSNINVLKTLNLRFRCFLAKVHELERRNRLLEKQLQQALEEGKQGRRGLARRDQAVQTGFISPIRPLGLPLSSRPAAVCPPSARVLGSPARSPAGPLASSAACQSSSSTSTSTSTSTAFSSSTRFMPGTIWSYSHARRLGPGLEPTLVQGPGLSWVHPDGVGVQIDTITPEIRALYNVLAKVKRERDEYKRRWEEEYTVRIQLQERVNELQEEAQEADACQEELAMKVEQLKAELVVFKGLMSNNLTELDTKIQEKAMKVDMDICRRIDITAKLCDLAQQRNCEDMIQMFQVPAMGGRKRERKAAVEEDTSLSESDGPRQPEGDEEESTALSINEEMQRMLSQLREYDFEDDCDSLTWEETEETLLLWEDFSGYAMAATEAQGEQQEDSLEKVIKDTESLFKTREKEYQETIDQIELELATAKNDMNRHLHEYMEMCSMKRGLDVQMETCRRLITQSGDRKSPAFTAVPLSDPPPAPSETEDSDCHVSSDSSMR", "length": 564, "header": "tr|A0A9J7GIV2-1|A0A9J7JZV0_CRIGR Computationally mapped isoform of Intermediate filament family orphan 1 isoform X8 OS=Cricetulus griseus OX=10029 GN=Iffo1 PE=4 SV=1 CANONICAL=A0A9J7JZV0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JQH3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQH3/entry", "sequence": { "sequence": "MNPLFGPNLFLLQQEQQGLAGPLGDPLGGDHFAGGGDLPPAPLASVGPAAYSPPGPGPAPPAAMALRNDLGSNINVLKTLNLRFRCFLAKVHELERRNRLLEKQLQQALEEGKQGRRGLARRDQAVQTGFISPIRPLGLPLSSRPAAVCPPSARVLGSPARSPAGPLASSAACQSSSSTSTSTSTSTAFSSSTRFMPGTIWSYSHARRLGPGLEPTLVQGPGLSWVHPDGVGVQIDTITPEIRALYNVLAKVKRERDEYKRRWEEEYTVRIQLQERVNELQEEAQEADACQEELAMKVEQLKAELVVFKGLMSNNLTELDTKIQEKAMKVDMDICRRIDITAKLCDLAQQRNCEDMIQMFQKKLVPAMGGRKRERKAAVEEDTSLSESDGPRQPEGDEEESTALSINEEMQRMLSQLREYDFEDDCDSLTWEETEETLLLWEDFSGYAMAATEAQGEQQQEDSLEKVIKDTESLFKTREKEYQETIDQIELELATAKNDMNRHLHEYMEMCSMKRGLDVQMETCRRLITQSGDRKSPAFTAVPLSDPPPAPSETEDSDCHVSSDSSMR", "length": 568, "header": "tr|A0A9J7JQH3-1|A0A9J7JZV0_CRIGR Computationally mapped isoform of Intermediate filament family orphan 1 isoform X8 OS=Cricetulus griseus OX=10029 GN=Iffo1 PE=4 SV=1 CANONICAL=A0A9J7JZV0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JY77-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JY77/entry", "sequence": { "sequence": "MNPLFGPNLFLLQQEQQGLAGPLGDPLGGDHFAGGGDLPPAPLASVGPAAYSPPGPGPAPPAAMALRNDLGSNINVLKTLNLRFRCFLAKVHELERRNRLLEKQLQQALEEGKQGRRGLARRDQAVQTGFISPIRPLGLPLSSRPAAVCPPSARVLGSPARSPAGPLASSAACQSSSSTSTSTSTSTAFSSSTRFMPGTIWSYSHARRLGPGLEPTLVQGPGLSWVHPDGVGVQIDTITPEIRALYNVLAKVKRERDEYKRRWEEEYTVRIQLQERVNELQEEAQEADACQEELAMKVEQLKAELVVFKGLMSNNLTELDTKIQEKAMKVDMDICRRIDITAKLCDLAQQRNCEDMIQMFQKKLVPAMGGRKRERKAAVEEDTSLSESDGPRQPEGDEEESTALSINEEMQRMLSQLREYDFEDDCDSLTWEETEETLLLWEDFSGYAMAATEAQGEQQEDSLEKVIKDTESLFKTREKEYQETIDQIELELATAKNDMNRHLHEYMEMCSMKRGLDVQMETCRRLITQSGDRKSPAFTAVPLSDPPPAPSETEDSDCHVSSDSSMR", "length": 567, "header": "tr|A0A9J7JY77-1|A0A9J7JY77_CRIGR Computationally mapped isoform of Intermediate filament family orphan 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Iffo1 PE=4 SV=1 CANONICAL=A0A9J7JZV0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JZS2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZS2/entry", "sequence": { "sequence": "MNPLFGPNLFLLQQEQQGLAGPLGDPLGGDHFAGGGDLPPAPLASVGPAAYSPPGPGPAPPAAMALRNDLGSNINVLKTLNLRFRCFLAKVHELERRNRLLEKQLQQALEEGKQGRRGLARRDQAVQTGFISPIRPLGLPLSSRPAAVCPPSARVLGSPARSPAGPLASSAACQSSSSTSTSTSTSTAFSSSTRFMPGTIWSYSHARRLGPGLEPTLVQGPGLSWVHPDGVGVQIDTITPEIRALYNVLAKVKRERDEYKRRWEEEYTVRIQLQERVNELQEEAQEADACQEELAMKVEQLKAELVVFKGLMSNNLTELDTKIQEKAMKVDMDICRRIDITAKLCDLAQQRNCEDMIQMFQKLVPAMGGRKRERKAAVEEDTSLSESDGPRQPEGDEEESTALSINEEMQRMLSQLREYDFEDDCDSLTWEETEETLLLWEDFSGYAMAATEAQGEQQQEDSLEKVIKDTESLFKTREKEYQETIDQIELELATAKNDMNRHLHEYMEMCSMKRGLDVQMETCRRLITQSGDRKSPAFTAVPLSDPPPAPSETEDSDCHVSSDSSMR", "length": 567, "header": "tr|A0A9J7JZS2-1|A0A9J7JZS2_CRIGR Computationally mapped isoform of Intermediate filament family orphan 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Iffo1 PE=4 SV=1 CANONICAL=A0A9J7JZV0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JZV0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZV0/entry", "sequence": { "sequence": "MNPLFGPNLFLLQQEQQGLAGPLGDPLGGDHFAGGGDLPPAPLASVGPAAYSPPGPGPAPPAAMALRNDLGSNINVLKTLNLRFRCFLAKVHELERRNRLLEKQLQQALEEGKQGRRGLARRDQAVQTGFISPIRPLGLPLSSRPAAVCPPSARVLGSPARSPAGPLASSAACQSSSSTSTSTSTSTAFSSSTRFMPGTIWSYSHARRLGPGLEPTLVQGPGLSWVHPDGVGVQIDTITPEIRALYNVLAKVKRERDEYKRRWEEEYTVRIQLQERVNELQEEAQEADACQEELAMKVEQLKAELVVFKGLMSNNLTELDTKIQEKAMKVDMDICRRIDITAKLCDLAQQRNCEDMIQMFQKKLSLHLSPIKVPAMGGRKRERKAAVEEDTSLSESDGPRQPEGDEEESTALSINEEMQRMLSQLREYDFEDDCDSLTWEETEETLLLWEDFSGYAMAATEAQGEQQEDSLEKVIKDTESLFKTREKEYQETIDQIELELATAKNDMNRHLHEYMEMCSMKRGLDVQMETCRRLITQSGDRKSPAFTAVPLSDPPPAPSETEDSDCHVSSDSSMR", "length": 575, "header": "tr|A0A9J7JZV0-1|A0A9J7JZV0_CRIGR Isoform 1 of Intermediate filament family orphan 1 isoform X8 OS=Cricetulus griseus OX=10029 GN=Iffo1 PE=4 SV=1 CANONICAL=A0A9J7JZV0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GEA3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEA3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GEA3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GEA3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100753382", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753382", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "intermediate filament", "id": "GO:0005882", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005882", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JZV0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZV0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 315, "end_pos": 317, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JZV0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZV0" }, { "id": "PS51842", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51842" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "IF rod", "eco_id": "ECO_0000259", "start_pos": 73, "end_pos": 542, "start_aa": "Asn", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 315, "end_pos": 317 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027282588", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282588" } ] }, { "annotation": "GTPase activator for the nuclear Ras-related regulatory protein RAP-1A (KREV-1), converting it to the putatively inactive GDP-bound state.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GF51", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF51#function" }, { "database": "UniProtKB", "id": "ARBA00057316", "url": "https://www.uniprot.org/uniprotkb/ARBA00057316#function" }, { "database": "UniProtKB", "id": "A0A9J7JYS9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYS9#function" }, { "database": "UniProtKB", "id": "A0A9J7H338", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H338#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, 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"InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100765938", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765938", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JYS9", "url": "https://www.orthodb.org/?gene=A0A9J7JYS9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15711", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15711", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15711:SF17", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15711:SF17", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02145", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02145", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21022", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21022", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027282588", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282588", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GF51", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF51", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GF51-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF51-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H338", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H338", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H338-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H338-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JYS9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYS9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JYS9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYS9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KA10", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KA10", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KA10-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KA10-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSQPAGRMHCRKAGIRAAVVLIGLLHKSRKQNKEKRKQELANSSDVTLPDRPLSPPLTAPPTMKSAEFFEMLEKMQGIKLEEQRPGPQKNKDDYIPYPSIEEVVEKGGPYPLIILPQFGGYWIEDPENVGTPTSLGSSVYEEEEEDSLSPNTFGYKLECRGEARAYRRHFLGKDHLNFYCTGSSLGNLILSIKCEEAEGIEYLRIILRSKLKTVHERIPLAGLSKLPSVPQIAKAFCDDAVGLKFNPVLYPKASQMIVSYDEHDVNNTFKFGVIYQKARQTLEEELFGNNEESPAFKEFLNLLGDTITLQDFKGFRGGLDVTHGQTGVESVYTIFRDREIMFHVSTKLPFTDGDTQQLQRKRHIGNDIVAIIFQEENTPFVPDMIASNFLHAYIVVQAENLGTETPSYKVSVTAREDVPAFGPPLPSPPVFQKGAEFREFLLTKLTNAENACCKSDKFAKLEDRTRAALLDNLHDELHTHTQVMLGLGPEEDKFENGGHGGFLESFKRAIRVRSHSMETMVGSQRKLHGGNIPGSLSGGSVHNSVEVTKTTFSPPVAAATVKNQSRSPIKRRSGLFPRLHSGSEGQGDSRTRCDSASSTPKTPDGGHSSQEIKSETSSNPSSPEICPNKEKPFIKLKENGRANISRSSSSTSSFSSTAGEGEAMEECDSGSSQPSTTSPFKQEVFAYSPSPSSESPGVGAAATPIIMSRSPTDAKSRNSPRSNLKFRFDKLSHASSSAGH", "length": 740, "header": "tr|A0A9J7JYS9-1|A0A9J7JYS9_CRIGR Isoform 1 of Rap1 GTPase-activating protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Rap1gap2 PE=4 SV=1 CANONICAL=A0A9J7JYS9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GF51-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF51/entry", "sequence": { "sequence": "MSQPAGRMHCRKAGIRAAVVLIGLLHKSRKQNKEKRKQELANSSDVTLPDRPLSPPLTAPPTMKSAEFFEMLEKMQDDYIPYPSIEEVVEKGGPYPLIILPQFGGYWIEDPENVGTPTSLGSSVYEEEEEDSLSPNTFGYKLECRGEARAYRRHFLGKDHLNFYCTGSSLGNLILSIKCEEAEGIEYLRIILRSKLKTVHERIPLAGLSKLPSVPQIAKAFCDDAVGLKFNPVLYPKASQMIVSYDEHDVNNTFKFGVIYQKARQTLEEELFGNNEESPAFKEFLNLLGDTITLQDFKGFRGGLDVTHGQTGVESVYTIFRDREIMFHVSTKLPFTDGDTQQLQRKRHIGNDIVAIIFQEENTPFVPDMIASNFLHAYIVVQAENLGTETPSYKVSVTAREDVPAFGPPLPSPPVFQKGAEFREFLLTKLTNAENACCKSDKFAKLEDRTRAALLDNLHDELHTHTQVMLGLGPEEDKFENGGHGGFLESFKRAIRVRSHSMETMVGSQRKLHGGNIPGSLSGGSVHNSVEVTKTTFSPPVAAATVKNQSRSPIKRRSGLFPRLHSGSEGQGDSRTRCDSASSTPKTPDGGHSSQEIKSETSSNPSSPEICPNKEKPFIKLKENGRANISRSSSSTSSFSSTAGEGEAMEECDSGSSQPSTTSPFKQEVFAYSPSPSSESPGVGAAATPIIMSRSPTDAKSRNSPRSNLKFRFDKLSHASSSAGH", "length": 725, "header": "tr|A0A9J7GF51-1|A0A9J7JYS9_CRIGR Computationally mapped isoform of Rap1 GTPase-activating protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Rap1gap2 PE=4 SV=1 CANONICAL=A0A9J7JYS9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H338-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H338/entry", "sequence": { "sequence": "MLASLKVKKQELANSSDVTLPDRPLSPPLTAPPTMKSAEFFEMLEKMQGIKLEEQRPGPQKNKDDYIPYPSIEEVVEKGGPYPLIILPQFGGYWIEDPENVGTPTSLGSSVYEEEEEDSLSPNTFGYKLECRGEARAYRRHFLGKDHLNFYCTGSSLGNLILSIKCEEAEGIEYLRIILRSKLKTVHERIPLAGLSKLPSVPQIAKAFCDDAVGLKFNPVLYPKASQMIVSYDEHDVNNTFKFGVIYQKARQTLEEELFGNNEESPAFKEFLNLLGDTITLQDFKGFRGGLDVTHGQTGVESVYTIFRDREIMFHVSTKLPFTDGDTQQLQRKRHIGNDIVAIIFQEENTPFVPDMIASNFLHAYIVVQAENLGTETPSYKVSVTAREDVPAFGPPLPSPPVFQKGAEFREFLLTKLTNAENACCKSDKFAKLEDRTRAALLDNLHDELHTHTQVMLGLGPEEDKFENGGHGGFLESFKRAIRVRSHSMETMVGSQRKLHGGNIPGSLSGGSVHNSVEVTKTTFSPPVAAATVKNQSRSPIKRRSGLFPRLHSGSEGQGDSRTRCDSASSTPKTPDGGHSSQEIKSETSSNPSSPEICPNKEKPFIKLKENGRANISRSSSSTSSFSSTAGEGEAMEECDSGSSQPSTTSPFKQEVFAYSPSPSSESPGVGAAATPIIMSRSPTDAKSRNSPRSNLKFRFDKLSHASSSAGH", "length": 712, "header": "tr|A0A9J7H338-1|A0A9J7H338_CRIGR Computationally mapped isoform of Rap1 GTPase-activating protein 2 isoform X5 OS=Cricetulus griseus OX=10029 GN=Rap1gap2 PE=4 SV=1 CANONICAL=A0A9J7JYS9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JYS9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYS9/entry", "sequence": { "sequence": "MSQPAGRMHCRKAGIRAAVVLIGLLHKSRKQNKEKRKQELANSSDVTLPDRPLSPPLTAPPTMKSAEFFEMLEKMQGIKLEEQRPGPQKNKDDYIPYPSIEEVVEKGGPYPLIILPQFGGYWIEDPENVGTPTSLGSSVYEEEEEDSLSPNTFGYKLECRGEARAYRRHFLGKDHLNFYCTGSSLGNLILSIKCEEAEGIEYLRIILRSKLKTVHERIPLAGLSKLPSVPQIAKAFCDDAVGLKFNPVLYPKASQMIVSYDEHDVNNTFKFGVIYQKARQTLEEELFGNNEESPAFKEFLNLLGDTITLQDFKGFRGGLDVTHGQTGVESVYTIFRDREIMFHVSTKLPFTDGDTQQLQRKRHIGNDIVAIIFQEENTPFVPDMIASNFLHAYIVVQAENLGTETPSYKVSVTAREDVPAFGPPLPSPPVFQKGAEFREFLLTKLTNAENACCKSDKFAKLEDRTRAALLDNLHDELHTHTQVMLGLGPEEDKFENGGHGGFLESFKRAIRVRSHSMETMVGSQRKLHGGNIPGSLSGGSVHNSVEVTKTTFSPPVAAATVKNQSRSPIKRRSGLFPRLHSGSEGQGDSRTRCDSASSTPKTPDGGHSSQEIKSETSSNPSSPEICPNKEKPFIKLKENGRANISRSSSSTSSFSSTAGEGEAMEECDSGSSQPSTTSPFKQEVFAYSPSPSSESPGVGAAATPIIMSRSPTDAKSRNSPRSNLKFRFDKLSHASSSAGH", "length": 740, "header": "tr|A0A9J7JYS9-1|A0A9J7JYS9_CRIGR Isoform 1 of Rap1 GTPase-activating protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Rap1gap2 PE=4 SV=1 CANONICAL=A0A9J7JYS9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KA10-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KA10/entry", "sequence": { "sequence": "MSQPAGRMHCRKAGIRAAVVLIGLLHKSRKQNKEKRKQELANSSDVTLPDRPLSPPLTAPPTMKSAEFFEMLEKMQGIKLEEQRPGPQKNKDDYIPYPSIEEVVEKGGPYPLIILPQFGGYWIEDPENVGTPTSLGSSVYEEEEEDSLSPNTFGYKLECRGEARAYRRHFLGKDHLNFYCTGSSLGNLILSIKCEEAEGIEYLRIILRSKLKTVHERIPLAGLSKLPSVPQIAKAFCDDAVGLKFNPVLYPKASQMIVSYDEHDVNNTFKFGVIYQKARQTLEEELFGNNEESPAFKEFLNLLGDTITLQDFKGFRGGLDVTHGQTGVESVYTIFRDREIMFHVSTKLPFTDGDTQQLQRKRHIGNDIVAIIFQEENTPFVPDMIASNFLHAYIVVQAENLGTETPSYKGAEFREFLLTKLTNAENACCKSDKFAKLEDRTRAALLDNLHDELHTHTQVMLGLGPEEDKFENGGHGGFLESFKRAIRVRSHSMETMVGSQRKLHGGNIPGSLSGGSVHNSVEVTKTTFSPPVAAATVKNQSRSPIKRRSGLFPRLHSGSEGQGDSRTRCDSASSTPKTPDGGHSSQEIKSETSSNPSSPEICPNKEKPFIKLKENGRANISRSSSSTSSFSSTAGEGEAMEECDSGSSQPSTTSPFKQEVFAYSPSPSSESPGVGAAATPIIMSRSPTDAKSRNSPRSNLKFRFDKLSHASSSAGH", "length": 716, "header": "tr|A0A9J7KA10-1|A0A9J7KA10_CRIGR Computationally mapped isoform of Rap1 GTPase-activating protein 2 isoform X4 OS=Cricetulus griseus OX=10029 GN=Rap1gap2 PE=4 SV=1 CANONICAL=A0A9J7JYS9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GF51", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF51" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GF51", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GF51" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100765938", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765938", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JYS9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYS9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JYS9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYS9" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JYS9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYS9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of small GTPase mediated signal transduction", "id": "GO:0051056", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051056", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JYS9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYS9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 266, "end_pos": 268, "annotation": "n_glycosylation_sequon" }, { "start_pos": 42, "end_pos": 44, "annotation": "n_glycosylation_sequon" }, { "start_pos": 563, "end_pos": 565, "annotation": "n_glycosylation_sequon" }, { 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"start_pos": 266, "end_pos": 268 }, { "start_pos": 42, "end_pos": 44 }, { "start_pos": 563, "end_pos": 565 }, { "start_pos": 643, "end_pos": 645 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JZQ9-1", "uniprot_ac": "A0A9J7JZQ9", "uniprot_id": "A0A9J7JZQ9_CRIGR", "mass": { "chemical_mass": 22308.0, "monoisotopic_mass": 22308.0 }, "refseq": { "ac": "XP_027283979", "name": "keratin-associated protein 4-3-like isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283979" }, "gene_names": [ { "name": "LOC107977277", "type": "recommended", "evidence": [ { "id": "A0A9J7JZQ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZQ9" } ] }, { "name": "LOC107977277", "type": "synonym", "evidence": [ { "id": "XP_027283979", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283979" } ] } ], "protein_names": [ { "name": "Keratin-associated protein 4-3-like isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7JZQ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZQ9/entry#names_and_taxonomy" } ] }, { "name": "keratin-associated protein 4-3-like isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027283979", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283979" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027283979", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283979" } ] }, { "annotation": "In the hair cortex, hair keratin intermediate filaments are embedded in an interfilamentous matrix, consisting of hair keratin-associated proteins (KRTAP), which are essential for the formation of a rigid and resistant hair shaft through their extensive disulfide bond cross-linking with abundant cysteine residues of hair keratins. 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"url": "https://www.uniprot.org/uniprotkb/A0A9J7GJM3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GJN9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJN9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GJN9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJN9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GM78", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GM78", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GM78-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GM78-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H5Y8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5Y8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H5Y8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5Y8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K157", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K157", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K157-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K157-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDVRRLKVNELREELQRRGLDTRGLKAELAERLLAALEAEEPEERELDADGGDGDDGDGDGGGRHGGDGEPGLPERRHDDEVDTEGGSELEGTAPPPPPGLQPHPHPHPEPGGYPGPDGHCENVMDNITRQNQFYETPVIKQENESGYDRRPLDMEPQQPAYRPVELKTEMKQEAPPSFLPPEASQLKPDRQQFQSRKRPFEENRGRGYFEHREDRRGRSPQPPAEEDEDDFDDTLVAIDTYNCDLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDPHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFADFECGNDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSILPGFTFIQHLPLSERIRGTIGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVQFIELQREEADKLVRQYNEEGRKAGPPPEKRFDNRGGGFRGRGGSGGFQRYDNRGPPGGNRGGFQNRGGGGGGGSGGGGGNYRGGFNRSGGGGYNQNRWGNNNRDNNNSNNRGSYNRAPQQQPPPQQPPPPQPPPQQPPPPPSYSPARNPPGASSYNKNSNIPGSSANTSTPTVSSYSPPQPSYSQPPYNQGGYTQGYTAPPPPPPPPPAYNYGSYGPYNPAPYTPPPPPTAQTYPQPSYNQYQQYAQQWSQYYQNQSPWPPYYGNYDYGGYSGSTQGGTSTQ", "length": 886, "header": "tr|A0A9J7K157-1|A0A9J7K157_CRIGR Isoform 1 of Heterogeneous nuclear ribonucleoprotein U-like protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Hnrnpul1 PE=4 SV=1 CANONICAL=A0A9J7K157-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GH50-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GH50/entry", "sequence": { "sequence": "MDVRRLKVNELREELQRRGLDTRGLKAELAERLLAALEAEEPEERELDADGGDGDDGDGDGGGRHGGDGEPGLPERRHDDEVDTEGGSELEGTAPPPPPGLQPHPHPHPEPGGYPGPDGHYVMDNITRQNQFYETPVIKQENESGYDRRPLDMEPQQPAYRPELKTEMKQEAPPSFLPPEASQLKPDRQQFQSRKRPFEENRGRGYFEHREDRRGRSPQPPAEEDEDDFDDTLVAIDTYNCDLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDPHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFADFECGNDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSILPGFTFIQHLPLSERIRGTIGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVQFIELQREEADKLVRQYNEEGRKAGPPPEKRFDNRGGGFRGRGGSGGFQRYDNRGPPGGNRGGFQNRGGGGGGGSGGGGGNYRGGFNRSGGGGYNQNRWGNNNRDNNNSNNRGSYNRAPQQQPPPQQPPPPQPPPQQPPPPPSYSPARNPPGASSYNKNSNIPGSSANTSTPTVSSYSPPQPSYSQPPYNQGGYTQGYTAPPPPPPPPPAYNYGSYGPYNPAPYTPPPPPTAQTYPQPSYNQYQQYAQQWSQYYQNQSPWPPYYGNYDYGGYSGSTQGGTSTQ", "length": 883, "header": "tr|A0A9J7GH50-1|A0A9J7K157_CRIGR Computationally mapped isoform of Heterogeneous nuclear ribonucleoprotein U-like protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Hnrnpul1 PE=4 SV=1 CANONICAL=A0A9J7K157-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GJM3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJM3/entry", "sequence": { "sequence": "MDVRRLKVNELREELQRRGLDTRGLKAELAERLLAALEAEEPEERELDADGGDGDDGDGDGGGRHGGDGEPGLPERRHDDEVDTEGGSELEGTAPPPPPGLQPHPHPHPEPGGYPGPDGHYVMDNITRQNQFYETPVIKQENESGYDRRPLDMEPQQPAYRPVELKTEMKQEAPPSFLPPEASQLKPDRQQFQSRKRPFEENRGRGYFEHREDRRGRSPQPPAEEDEDDFDDTLVAIDTYNCDLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDPHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFADFECGNDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSILPGFTFIQHLPLSERIRGTIGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVQFIELQREEADKLVRQYNEEGRKAGPPPEKRFDNRGGGFRGRGGSGGFQRYDNRGPPGGNRGGFQNRGGGGGGGSGGGGGNYRGGFNRSGGGGYNQNRWGNNNRDNNNSNNRGSYNRAPQQQPPPQQPPPPQPPPQQPPPPPSYSPARNPPGASSYNKNSNIPGSSANTSTPTVSSYSPPQPSYSQPPYNQGGYTQGYTAPPPPPPPPPAYNYGSYGPYNPAPYTPPPPPTAQTYPQPSYNQYQQYAQQWSQYYQNQSPWPPYYGNYDYGGYSGSTQGGTSTQ", "length": 884, "header": "tr|A0A9J7GJM3-1|A0A9J7K157_CRIGR Computationally mapped isoform of Heterogeneous nuclear ribonucleoprotein U-like protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Hnrnpul1 PE=4 SV=1 CANONICAL=A0A9J7K157-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GJN9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GJN9/entry", "sequence": { "sequence": "MDVRRLKVNELREELQRRGLDTRGLKAELAERLLAALEAEEPEERELDADGGDGDDGDGDGGGRHGGDGEPGLPERRHDDEVDTEGGSELEGTAPPPPPGLQPHPHPHPEPGGYPGPDGHCENVMDNITRQNQFYETPVIKQENESGYDRRPLDMEPQQPAYRPELKTEMKQEAPPSFLPPEASQLKPDRQQFQSRKRPFEENRGRGYFEHREDRRGRSPQPPAEEDEDDFDDTLVAIDTYNCDLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDPHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFADFECGNDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSILPGFTFIQHLPLSERIRGTIGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVQFIELQREEADKLVRQYNEEGRKAGPPPEKRFDNRGGGFRGRGGSGGFQRYDNRGPPGGNRGGFQNRGGGGGGGSGGGGGNYRGGFNRSGGGGYNQNRWGNNNRDNNNSNNRGSYNRAPQQQPPPQQPPPPQPPPQQPPPPPSYSPARNPPGASSYNKNSNIPGSSANTSTPTVSSYSPPQPSYSQPPYNQGGYTQGYTAPPPPPPPPPAYNYGSYGPYNPAPYTPPPPPTAQTYPQPSYNQYQQYAQQWSQYYQNQSPWPPYYGNYDYGGYSGSTQGGTSTQ", "length": 885, "header": "tr|A0A9J7GJN9-1|A0A9J7K157_CRIGR Computationally mapped isoform of Heterogeneous nuclear ribonucleoprotein U-like protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Hnrnpul1 PE=4 SV=1 CANONICAL=A0A9J7K157-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GM78-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GM78/entry", "sequence": { "sequence": "MDNITRQNQFYETPVIKQENESGYDRRPLDMEPQQPAYRPVELKTEMKQEAPPSFLPPEASQLKPDRQQFQSRKRPFEENRGRGYFEHREDRRGRSPQPPAEEDEDDFDDTLVAIDTYNCDLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDPHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFADFECGNDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSILPGFTFIQHLPLSERIRGTIGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVQFIELQREEADKLVRQYNEEGRKAGPPPEKRFDNRGGGFRGRGGSGGFQRYDNRGPPGGNRGGFQNRGGGGGGGSGGGGGNYRGGFNRSGGGGYNQNRWGNNNRDNNNSNNRGSYNRAPQQQPPPQQPPPPQPPPQQPPPPPSYSPARNPPGASSYNKNSNIPGSSANTSTPTVSSYSPPQPSYSQPPYNQGGYTQGYTAPPPPPPPPPAYNYGSYGPYNPAPYTPPPPPTAQTYPQPSYNQYQQYAQQWSQYYQNQSPWPPYYGNYDYGGYSGSTQGGTSTQ", "length": 762, "header": "tr|A0A9J7GM78-1|A0A9J7GM78_CRIGR Computationally mapped isoform of Heterogeneous nuclear ribonucleoprotein U-like protein 1 isoform X6 OS=Cricetulus griseus OX=10029 GN=Hnrnpul1 PE=4 SV=1 CANONICAL=A0A9J7K157-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H5Y8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5Y8/entry", "sequence": { "sequence": "MDNITRQNQFYETPVIKQENESGYDRRPLDMEPQQPAYRPELKTEMKQEAPPSFLPPEASQLKPDRQQFQSRKRPFEENRGRGYFEHREDRRGRSPQPPAEEDEDDFDDTLVAIDTYNCDLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDPHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFADFECGNDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSILPGFTFIQHLPLSERIRGTIGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVQFIELQREEADKLVRQYNEEGRKAGPPPEKRFDNRGGGFRGRGGSGGFQRYDNRGPPGGNRGGFQNRGGGGGGGSGGGGGNYRGGFNRSGGGGYNQNRWGNNNRDNNNSNNRGSYNRAPQQQPPPQQPPPPQPPPQQPPPPPSYSPARNPPGASSYNKNSNIPGSSANTSTPTVSSYSPPQPSYSQPPYNQGGYTQGYTAPPPPPPPPPAYNYGSYGPYNPAPYTPPPPPTAQTYPQPSYNQYQQYAQQWSQYYQNQSPWPPYYGNYDYGGYSGSTQGGTSTQ", "length": 761, "header": "tr|A0A9J7H5Y8-1|A0A9J7H5Y8_CRIGR Computationally mapped isoform of Heterogeneous nuclear ribonucleoprotein U-like protein 1 isoform X7 OS=Cricetulus griseus OX=10029 GN=Hnrnpul1 PE=4 SV=1 CANONICAL=A0A9J7K157-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K157-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K157/entry", "sequence": { "sequence": "MDVRRLKVNELREELQRRGLDTRGLKAELAERLLAALEAEEPEERELDADGGDGDDGDGDGGGRHGGDGEPGLPERRHDDEVDTEGGSELEGTAPPPPPGLQPHPHPHPEPGGYPGPDGHCENVMDNITRQNQFYETPVIKQENESGYDRRPLDMEPQQPAYRPVELKTEMKQEAPPSFLPPEASQLKPDRQQFQSRKRPFEENRGRGYFEHREDRRGRSPQPPAEEDEDDFDDTLVAIDTYNCDLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDPHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFADFECGNDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSILPGFTFIQHLPLSERIRGTIGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVQFIELQREEADKLVRQYNEEGRKAGPPPEKRFDNRGGGFRGRGGSGGFQRYDNRGPPGGNRGGFQNRGGGGGGGSGGGGGNYRGGFNRSGGGGYNQNRWGNNNRDNNNSNNRGSYNRAPQQQPPPQQPPPPQPPPQQPPPPPSYSPARNPPGASSYNKNSNIPGSSANTSTPTVSSYSPPQPSYSQPPYNQGGYTQGYTAPPPPPPPPPAYNYGSYGPYNPAPYTPPPPPTAQTYPQPSYNQYQQYAQQWSQYYQNQSPWPPYYGNYDYGGYSGSTQGGTSTQ", "length": 886, "header": "tr|A0A9J7K157-1|A0A9J7K157_CRIGR Isoform 1 of Heterogeneous nuclear ribonucleoprotein U-like protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Hnrnpul1 PE=4 SV=1 CANONICAL=A0A9J7K157-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 834, "start_aa": "Thr", "end_pos": 834, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr834", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GH50", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GH50" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GH50", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GH50" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100772778", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772778", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K157", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K157" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K157", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K157" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "alternative mRNA splicing, via spliceosome", "id": "GO:0000380", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000380", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K157", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K157" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 127, "end_pos": 129, "annotation": "n_glycosylation_sequon" }, { "start_pos": 144, "end_pos": 146, "annotation": "n_glycosylation_sequon" }, { "start_pos": 590, "end_pos": 592, "annotation": "n_glycosylation_sequon" }, { "start_pos": 690, "end_pos": 692, "annotation": "n_glycosylation_sequon" }, { "start_pos": 710, "end_pos": 712, "annotation": "n_glycosylation_sequon" }, { "start_pos": 771, "end_pos": 773, "annotation": "n_glycosylation_sequon" }, { "start_pos": 859, "end_pos": 861, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7K157", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K157" }, { "id": "PS50188", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50188" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "B30.2/SPRY", "eco_id": "ECO_0000259", "start_pos": 217, "end_pos": 414, "start_aa": "Arg", "end_aa": "Glu", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7K157", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K157" }, { "id": "PS50800", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50800" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SAP", "eco_id": "ECO_0000259", "start_pos": 3, "end_pos": 37, "start_aa": "Val", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 834 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 127, "end_pos": 129 }, { "start_pos": 144, "end_pos": 146 }, { "start_pos": 590, "end_pos": 592 }, { "start_pos": 690, "end_pos": 692 }, { "start_pos": 710, "end_pos": 712 }, { "start_pos": 771, "end_pos": 773 }, { "start_pos": 859, "end_pos": 861 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JZ96-1", "uniprot_ac": "A0A9J7JZ96", "uniprot_id": "A0A9J7JZ96_CRIGR", "mass": { "chemical_mass": 147796.0, "monoisotopic_mass": 147796.0 }, "refseq": { "ac": "XP_027285844", "name": "DENN domain-containing protein 5B isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285844" }, "gene_names": [ { "name": "Dennd5b", "type": "recommended", "evidence": [ { "id": "A0A9J7JZ96", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZ96" } ] }, { "name": "Dennd5b", "type": "synonym", "evidence": [ { "id": "XP_027285844", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285844" } ] } ], "protein_names": [ { "name": "DENN domain-containing protein 5B isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027285844", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285844" }, { "id": "A0A9J7JZ96", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZ96/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048601.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027285844", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285844" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JZ96", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZ96" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Dennd5b", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZ96", "locus": {} } ], "crossref": [ { "id": "cd01757", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01757", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd17691", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17691", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd17693", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17693", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100762143", "url": "https://www.ncbi.nlm.nih.gov/gene/100762143", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001194", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001194", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004012", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004012", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005112", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005112", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005113", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005113", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036392", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036392", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037213", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037213", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037516", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037516", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043153", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043153", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047277", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047277", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047278", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047278", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047292", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047292", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047293", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047293", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762143", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762143", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JZ96", "url": "https://www.orthodb.org/?gene=A0A9J7JZ96", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46070", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46070", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46070:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46070:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01477", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01477", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02141", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02141", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02759", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02759", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03455", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03455", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03456", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03456", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027285844", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285844", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GHE6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHE6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GHE6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHE6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H7P2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7P2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H7P2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7P2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JZ96", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZ96", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JZ96-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZ96-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"length": 1296, "header": "tr|A0A9J7JZ96-1|A0A9J7JZ96_CRIGR Isoform 1 of DENN domain-containing protein 5B isoform X2 OS=Cricetulus griseus OX=10029 GN=Dennd5b PE=3 SV=1 CANONICAL=A0A9J7JZ96-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GHE6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHE6/entry", "sequence": { "sequence": 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"length": 1274, "header": "tr|A0A9J7GHE6-1|A0A9J7JZ96_CRIGR Computationally mapped isoform of DENN domain-containing protein 5B isoform X2 OS=Cricetulus griseus OX=10029 GN=Dennd5b PE=3 SV=1 CANONICAL=A0A9J7JZ96-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H7P2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7P2/entry", "sequence": { "sequence": "MSGSGARRPGRARPAACRFAHYFVLCGIDADSGLEPDELAVLYQWLEADRHGKSQDTANTTSGENFDQSPLRRTFKSKVLAHYPQNIEWNPFDQDAVNMLCMPKGLSFRTQADNKEPQFHSFIITREDGSRTYGFVLTFYEEVTSKQICTAMQTLYQMHNAEQYSSVYASSSCSMDSLASSIDEGDATSLLKLQRYNSYDINRDTLYVSKSICLITPLPFMQACKKFLLQLHKAVTSQQPPPLPLESYIHNILYEVPLPPPGRSLKFYGVYEPVICQRPGPNELPLSDYPLREAFELLGLENLVQVFTCVLLEMQILLYSQDYQRLMTVAEGITTLLFPFQWQHVYVPILPASLLHFLDAPVPYLMGLQSKEGTDRSKLELPQEANLCFVDIDNHFIELPEEFPQFPNKVDFIQELSEVLLQFGIPPEGSLHCSESATKLKNMVLKDLVNDEKNGNTPTNNISVYEFMKGNETIARLQALADRTGVTVGKIDLSASLNEKEKDFKLQCEEAELRDYQLNVQLREVFACRFIQMFADYEAFVIQTAQDMESWLTNREQMQNFDKASFLSDQPEPYLPFLSRFIETQMFATFIDNKIMSQWEEKDPLLRVFDSRIEKIRLYNVRAPTPTLRTSVYQKCSSLKEAAQSIEQRLMKMDHTAIHPHLLDMKIGQGKYEQGFFPKLQSDVLATGPANNNRWVSRSATAQRRKERLRQHSEHIGLDNDIREKYMQEARSLGKNMRQPKLSDLSPAVIAQTNWKFVEGLLKECRMKTKRMLVEKMGHEAVELGHGEANITGLEENTLIASLCDLLERIWSHGLQVKQGKSALWSHLIQFQDREEKQEHLTDSPVALGPERRKSDSGVMLPTLRVSLIQDMRHIQNMSEIKTDVGRARAWIRLSLEKKLLSQHLKQLLSNQLLTKKLYKRYAFLRCEEEREQFLYHLLSLNAVDYFCFTSVFTTIMIPYRSVIIPIKKLSNAIITSNPWICVSGELGDTGVMQIPKNLLEMTFECQNLGKLTTVQIGHDNSGLLAKWLVDCVMVRNEITGHTYRFPCGRWLGKGIDDGSLERILIGELMTSASDEDLGKQCRTPPQQKSPTTTRRLSITSLTGKTSKPNAGQIQEGIGEAVNNIVKHFHKPEKERKQWLILKPLTRF", "length": 1148, "header": "tr|A0A9J7H7P2-1|A0A9J7H7P2_CRIGR Computationally mapped isoform of DENN domain-containing protein 5B isoform X4 OS=Cricetulus griseus OX=10029 GN=Dennd5b PE=3 SV=1 CANONICAL=A0A9J7JZ96-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JZ96-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZ96/entry", "sequence": { "sequence": "MSGSGARRPGRARPAACRFAHYFVLCGIDADSGLEPDELAVLYQWLEADRHGKSQDTANTTSGENFDQSPLRRTFKSKVLAHYPQNIEWNPFDQDAVNMLCMPKGLSFRTQADNKEPQFHSFIITREDGSRTYGFVLTFYEEVTSKQICTAMQTLYQMHNAEQYSSVYASSSCSMDSLASSIDEGDATSLLKLQRYNSYDINRDTLYVSKSICLITPLPFMQACKKFLLQLHKAVTSQQPPPLPLESYIHNILYEVPLPPPGRSLKFYGVYEPVICQRPGPNELPLSDYPLREAFELLGLENLVQVFTCVLLEMQILLYSQDYQRLMTVAEGITTLLFPFQWQHVYVPILPASLLHFLDAPVPYLMGLQSKEGTDRSKLELPQEANLCFVDIDNHFIELPEEFPQFPNKVDFIQELSEVLLQFGIPPEGSLHCSESATKLKNMVLKDLVNDEKNGNTPTNNISVYEFMKGNETIARLQALADRTGVTVGKIDLSASLNEKEKDFKLQCEEAELRDYQLNVQLREVFACRFIQMFADYEAFVIQTAQDMESWLTNREQMQNFDKASFLSDQPEPYLPFLSRFIETQMFATFIDNKIMSQWEEKDPLLRVFDSRIEKIRLYNVRAPTPTLRTSVYQKCSSLKEAAQSIEQRLMKMDHTAIHPHLLDMKIGQGKYEQGFFPKLQSDVLATGPANNNRWVSRSATAQRRKERLRQHSEHIGLDNDIREKYMQEARSLGKNMRQPKLSDLSPAVIAQTNWKFVEGLLKECRMKTKRMLVEKMGHEAVELGHGEANITGLEENTLIASLCDLLERIWSHGLQVKQGKSALWSHLIQFQDREEKQEHLTDSPVALGPERRKSDSGVMLPTLRVSLIQDMRHIQNMSEIKTDVGRARAWIRLSLEKKLLSQHLKQLLSNQLLTKKLYKRYAFLRCEEEREQFLYHLLSLNAVDYFCFTSVFTTIMIPYRSVIIPIKKLSNAIITSNPWICVSGELGDTGVMQIPKNLLEMTFECQNLGKLTTVQIGHDNSGLLAKWLVDCVMVRNEITGHTYRFPCGRWLGKGIDDGSLERILIGELMTSASDEDLGKQCRTPPQQKSPTTTRRLSITSLTGKTSKPNAGQIQEGIGEAVNNIVKHFHKPEKERGSLTVLLCGENGLVAALEQVFHHGFKSARIFHKNVFIWDFVEKAVAYFETTDQILDNEDDVLIQKSSCKTFCHYVNAINTAPRSIGKDGKFQILVCLGTRDHLLPQWIPLLAECPAITRMYEESALLRDHMTVNSLIRILQTIQDFTIVLEGSLIKGVDV", "length": 1296, "header": "tr|A0A9J7JZ96-1|A0A9J7JZ96_CRIGR Isoform 1 of DENN domain-containing protein 5B isoform X2 OS=Cricetulus griseus OX=10029 GN=Dennd5b PE=3 SV=1 CANONICAL=A0A9J7JZ96-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 487, "start_aa": "Thr", "end_pos": 487, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr487", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly 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Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GHE6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHE6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035297673", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035297673" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K4V5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4V5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Calhm3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4V5", "locus": {} } ], "crossref": [ { "id": "A0A9J7K4V5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K4V5", "database": "AlphaFoldDB", "categories": [] }, { "id": "100753966", "url": "https://www.ncbi.nlm.nih.gov/gene/100753966", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029569", 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"MKQRSTQAAAVMDRFRMLFQNLQSSSESVMNGICLLLAAVTVKMYSSFDFNCPCLARYNALYGLGLLLTPSLALFLCGLLVNRQSVVMVEEWRRPAGHRKKDLGIIRYMCSSVLQRALAAPMVWILLALLDGKCFVCAFSNSVDPEKFLDFANMTPSQVQLFLAKVPCKEDEMVKDSPARKAVSRYLRCLSQAIGWSITLLLIVVAFLARCLRPCFDQTVFLQRRYWSNYVDLEQKLFDETCCEHARDFAHRCVLHFFASMQSELRALGLHRGGIPESQELPEPPEDLDGGSGKAHLRAISSREQVDHLLSTWYSSKPPLDLAASPKLWRPGLNHRASIAAPGTKLCHQVDV", "length": 352, "header": "tr|A0A9J7JJM9-1|A0A9J7K4V5_CRIGR Computationally mapped isoform of Calcium homeostasis modulator protein 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Calhm3 PE=3 SV=1 CANONICAL=A0A9J7K4V5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K4V5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4V5/entry", "sequence": { "sequence": "MLTEAKCSPGPGAGCIWPVWEIHPPHPGKAANRQRSTQAAAVMDRFRMLFQNLQSSSESVMNGICLLLAAVTVKMYSSFDFNCPCLARYNALYGLGLLLTPSLALFLCGLLVNRQSVVMVEEWRRPAGHRKKDLGIIRYMCSSVLQRALAAPMVWILLALLDGKCFVCAFSNSVDPEKFLDFANMTPSQVQLFLAKVPCKEDEMVKDSPARKAVSRYLRCLSQAIGWSITLLLIVVAFLARCLRPCFDQTVFLQRRYWSNYVDLEQKLFDETCCEHARDFAHRCVLHFFASMQSELRALGLHRGGIPESQELPEPPEDLDGGSGKAHLRAISSREQVDHLLSTWYSSKPPLDLAASPKLWRPGLNHRASIAAPGTKLCHQVDV", "length": 383, "header": "tr|A0A9J7K4V5-1|A0A9J7K4V5_CRIGR Isoform 1 of Calcium homeostasis modulator protein 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Calhm3 PE=3 SV=1 CANONICAL=A0A9J7K4V5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"https://www.uniprot.org/uniprotkb/A0A9J7JSX0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K737", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K737", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K737-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K737-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEAITNYWKEASALKIRDPTVSERTIVVSGLPVGLLKDQLMRRYFQNEGEHVEEVIYPSRTKGVAYIIFKEKKVAQNIIRQRKYPLASKPRLTVSGFSEKVFNHVMAILDLSVFRTQIVLESLVMDLKKKIPTLNFSSLGPSGKISVQGSFPAIMKLKQALISKAISPLENHRKYASDRRNQNRQNPGSVLQRSDNSTVALGTSVPEAARSEGTLVLDTDTFFYLKHKCDFYELTLNKYHILCQERVDGDVITICLQNAHNGSCSNSVRHVKEIIEEWVQGLHLELRKETLVLEGRGDREKRNIKQACEQLCYRYLRVLINLHNTHIDIIGPSSDTFLFKTELIKCARQKVTKGGGLNELARPKINDKSWTYTDKSK", "length": 377, "header": "tr|A0A9J7K737-1|A0A9J7K737_CRIGR Isoform 1 of RNA-binding protein 43 isoform X2 OS=Cricetulus griseus OX=10029 GN=Rbm43 PE=4 SV=1 CANONICAL=A0A9J7K737-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JSX0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSX0/entry", "sequence": { "sequence": "MASALKIRDPTVSERTIVVSGLPVGLLKDQLMRRYFQNEGEHVEEVIYPSRTKGVAYIIFKEKKVAQNIIRQRKYPLASKPRLTVSGFSEKVFNHVMAILDLSVFRTQIVLESLVMDLKKKIPTLNFSSLGPSGKISVQGSFPAIMKLKQALISKAISPLENHRKYASDRRNQNRQNPGSVLQRSDNSTVALGTSVPEAARSEGTLVLDTDTFFYLKHKCDFYELTLNKYHILCQERVDGDVITICLQNAHNGSCSNSVRHVKEIIEEWVQGLHLELRKETLVLEGRGDREKRNIKQACEQLCYRYLRVLINLHNTHIDIIGPSSDTFLFKTELIKCARQKVTKGGGLNELARPKINDKSWTYTDKSK", "length": 368, "header": "tr|A0A9J7JSX0-1|A0A9J7K737_CRIGR Computationally mapped isoform of RNA-binding protein 43 isoform X2 OS=Cricetulus griseus OX=10029 GN=Rbm43 PE=4 SV=1 CANONICAL=A0A9J7K737-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K737-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K737/entry", "sequence": { "sequence": "MEAITNYWKEASALKIRDPTVSERTIVVSGLPVGLLKDQLMRRYFQNEGEHVEEVIYPSRTKGVAYIIFKEKKVAQNIIRQRKYPLASKPRLTVSGFSEKVFNHVMAILDLSVFRTQIVLESLVMDLKKKIPTLNFSSLGPSGKISVQGSFPAIMKLKQALISKAISPLENHRKYASDRRNQNRQNPGSVLQRSDNSTVALGTSVPEAARSEGTLVLDTDTFFYLKHKCDFYELTLNKYHILCQERVDGDVITICLQNAHNGSCSNSVRHVKEIIEEWVQGLHLELRKETLVLEGRGDREKRNIKQACEQLCYRYLRVLINLHNTHIDIIGPSSDTFLFKTELIKCARQKVTKGGGLNELARPKINDKSWTYTDKSK", "length": 377, "header": "tr|A0A9J7K737-1|A0A9J7K737_CRIGR Isoform 1 of RNA-binding protein 43 isoform X2 OS=Cricetulus griseus OX=10029 GN=Rbm43 PE=4 SV=1 CANONICAL=A0A9J7K737-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JSX0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSX0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JSX0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSX0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100771753", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771753", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K737", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K737" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 135, "end_pos": 137, "annotation": "n_glycosylation_sequon" }, { "start_pos": 196, "end_pos": 198, "annotation": "n_glycosylation_sequon" }, { "start_pos": 261, "end_pos": 263, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7K737", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K737" }, { "id": "PS50102", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50102" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRM", "eco_id": "ECO_0000259", "start_pos": 24, "end_pos": 99, "start_aa": "Arg", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 135, "end_pos": 137 }, { "start_pos": 196, "end_pos": 198 }, { "start_pos": 261, "end_pos": 263 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7K0M1-1", "uniprot_ac": "A0A9J7K0M1", "uniprot_id": "A0A9J7K0M1_CRIGR", "mass": { "chemical_mass": 63736.0, "monoisotopic_mass": 63736.0 }, "refseq": { "ac": "XP_035294838", "name": "disabled homolog 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035294838" }, "gene_names": [ { "name": "Dab1", "type": "recommended", "evidence": [ { "id": "A0A9J7K0M1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0M1" } ] }, { "name": "Dab1", "type": "synonym", "evidence": [ { "id": "XP_035294838", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035294838" } ] } ], "protein_names": [ { "name": "Disabled homolog 1 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7K0M1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0M1/entry#names_and_taxonomy" } ] }, { "name": "disabled homolog 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_035294838", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035294838" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035294838", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035294838" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K0M1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0M1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Dab1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0M1", "locus": {} } ], "crossref": [ { "id": "A0A9J7K0M1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K0M1", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd01215", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01215", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100773659", "url": "https://www.ncbi.nlm.nih.gov/gene/100773659", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006020", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006020", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048559", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048559", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048561", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048561", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100773659", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773659", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K0M1", "url": "https://www.orthodb.org/?gene=A0A9J7K0M1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47695", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47695", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47695:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47695:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00640", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00640", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21792", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21792", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035294838", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035294838", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GNW5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GNW5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GNW5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GNW5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JTZ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTZ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JTZ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTZ9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K0M1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0M1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K0M1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0M1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSTETELQAAVKTSTKKDSRKKGQDRSEATLIKRFKGEGVRYKAKLIGIDEVSAARGDKLCQDSMMKLKGVVAGARSKGEHKQKIFLTISFGGIKIFDEKTGALQHHHAVHEISYIAKDITDHRAFGYVCGKEGNHRFVAIKTAQAAEPVILDLRDLFQLIYELKQREELEKKAQKDKQCEQAVYQTILEEDVEDPVYQYIVFEAGHEPIRDPETEENIYQVPTSQKKEGVYDVPKSQPVSNSQPLEDFEERFAAATPNRHLSVDFDELLEATKAVTQLELFGDMSTPPDITSPPTPATPGDAFLPSSSQTLPGSADVFGSVSFGTAAVPSGYVAMGAVLPSFWGQQPLVQQQIAMGAQPPVAQVMPGAQPIAWGQPGLFPTTQQPWPTVAGQFPPAAFMPTQTVMPLPAAMFQGPLTPLATVPGTNDSARSSPQSDKPRQKMGKEMFKDFQMVQPPPVPSRKPDQPSLTCTSEAFSSYFNKVGVAQDTDDCDDFDISQLNLTPVTSTTPSTNSPPTPAPRQSSPSKSSASHASDPNPDDIFEEGFESPSKSEEQEAPDGSQASSTSDPFGEPSGEPSGDNISPQDGS", "length": 588, "header": "tr|A0A9J7K0M1-1|A0A9J7K0M1_CRIGR Isoform 1 of Disabled homolog 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Dab1 PE=4 SV=1 CANONICAL=A0A9J7K0M1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GNW5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GNW5/entry", "sequence": { "sequence": "MSTETELQAAVKTSTKKDSRKKGQDRSEATLIKRFKGEGVRYKAKLIGIDEVSAARGDKLCQDSMMKLKGVVAGARSKGEHKQKIFLTISFGGIKIFDEKTGALQHHHAVHEISYIAKDITDHRAFGYVCGKEGNHRFVAIKTAQAAEPVILDLRDLFQLIYELKQREELEKKAQKDKQCEQAVYQTILEEDVEDPVYQYIVFEAGHEPIRDPETEENIYQVPTSQKKEGVYDVPKSQPAVTQLELFGDMSTPPDITSPPTPATPGDAFLPSSSQTLPGSADVFGSVSFGTAAVPSGYVAMGAVLPSFWGQQPLVQQQIAMGAQPPVAQVMPGAQPIAWGQPGLFPTTQQPWPTVAGQFPPAAFMPTQTVMPLPAAMFQGPLTPLATVPGTNDSARSSPQSDKPRQKMGKEMFKDFQMVQPPPVPSRKPDQPSLTCTSEAFSSYFNKVGVAQDTDDCDDFDISQLNLTPVTSTTPSTNSPPTPAPRQSSPSKSSASHASDPNPDDIFEEGFESPSKSEEQEAPDGSQASSTSDPFGEPSGEPSGDNISPQDGS", "length": 553, "header": "tr|A0A9J7GNW5-1|A0A9J7GNW5_CRIGR Computationally mapped isoform of Disabled homolog 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Dab1 PE=4 SV=1 CANONICAL=A0A9J7K0M1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JTZ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTZ9/entry", "sequence": { "sequence": "MSTETELQAAVKTSTKKDSRKKGQDRSEATLIKRFKGEGVRYKAKLIGIDEVSAARGDKLCQDSMMKLKGVVAGARSKGEHKQKIFLTISFGGIKIFDEKTGALQHHHAVHEISYIAKDITDHRAFGYVCGKEGNHRFVAIKTAQAAEPVILDLRDLFQLIYELKQREELEKKAQKDKQCEQAVYQTILEEDVEDPVYQYIVFEAGHEPIRDPETEENIYQVPTSQKKEGVYDVPKSQPVSAVTQLELFGDMSTPPDITSPPTPATPGDAFLPSSSQTLPGSADVFGSVSFGTAAVPSGYVAMGAVLPSFWGQQPLVQQQIAMGAQPPVAQVMPGAQPIAWGQPGLFPTTQQPWPTVAGQFPPAAFMPTQTVMPLPAAMFQGPLTPLATVPGTNDSARSSPQSDKPRQKMGKEMFKDFQMVQPPPVPSRKPDQPSLTCTSEAFSSYFNKVGVAQDTDDCDDFDISQLNLTPVTSTTPSTNSPPTPAPRQSSPSKSSASHASDPNPDDIFEEGFESPSKSEEQEAPDGSQASSTSDPFGEPSGEPSGDNISPQDGS", "length": 555, "header": "tr|A0A9J7JTZ9-1|A0A9J7K0M1_CRIGR Computationally mapped isoform of Disabled homolog 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Dab1 PE=4 SV=1 CANONICAL=A0A9J7K0M1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K0M1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0M1/entry", "sequence": { "sequence": 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"sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7K0Q2-1", "uniprot_ac": "A0A9J7K0Q2", "uniprot_id": "A0A9J7K0Q2_CRIGR", "mass": { "chemical_mass": 32887.0, "monoisotopic_mass": 32887.0 }, "refseq": { "ac": "XP_035303894", "name": "synaptogyrin-3 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303894" }, "gene_names": [ { "name": "Syngr3", "type": "recommended", "evidence": [ { "id": "A0A9J7K0Q2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0Q2" } ] }, { "name": "Syngr3", "type": "synonym", "evidence": [ { "id": "XP_035303894", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303894" } ] } ], "protein_names": [ { "name": "Synaptogyrin-3 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7K0Q2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0Q2/entry#names_and_taxonomy" } ] }, { "name": "synaptogyrin-3 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035303894", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303894" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. 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This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027282620", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282620" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JX78", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JX78" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Spns3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JX78", "locus": {} } ], "crossref": [ { "id": "A0A9J7JX78", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JX78", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd17328", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17328", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "113836784", "url": "https://www.ncbi.nlm.nih.gov/gene/113836784", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011701", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011701", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020846", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020846", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113836784", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113836784", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JX78", "url": "https://www.orthodb.org/?gene=A0A9J7JX78", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23505", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23505", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23505:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23505:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07690", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07690", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027282620", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282620", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JX78", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JX78", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JX78-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JX78-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATECIDPWTGGPQSQALSPDGQYGALASGRCVPPSTSASWSLPRWRAYLAAAVLCYINLLNYMNWFIIPGVLLDVQKYFHISDSHAGLLQTVFIGCLLVSAPVFGYLGDRHSRKATLSFGILLWSGAGLSSSFISYQYSWLFFLSRGVVGAGAASYSTIAPTVLGDLFVKDQRTCVLAVFYIFIPVGSGLGYVLGSVVAELTGNWRWALRIMPCLDALALVLLILLVPDIPRGAAEKQEEVAVEAPRSSWCEDVRYLGRNWSFVFSTLGVTAIAFVTGALGFWAPKFLFEARVVHGLQLPCFQDQCGSQDSLIFGALTVATGIIGVILGAEASRRYKKVNPRAEPLICASSLFATAPCLYLALILASRTLLASYVFLALGELLLSCNWAVVADILLSVVVPRCRGTAEALQITVAHILGDAGSPYLTGLISSVLQTGRPNSYLQRFLSLQHSFLCCAFAIVLGGGCFLLTALHLERDQAQARQSGKGTLESKDATSRNTEHQGLLSSTSTPAEEP", "length": 516, "header": "tr|A0A9J7JX78-1|A0A9J7JX78_CRIGR Isoform 1 of Protein spinster homolog 3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Spns3 PE=3 SV=1 CANONICAL=A0A9J7JX78-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JX78-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JX78/entry", "sequence": { "sequence": "MATECIDPWTGGPQSQALSPDGQYGALASGRCVPPSTSASWSLPRWRAYLAAAVLCYINLLNYMNWFIIPGVLLDVQKYFHISDSHAGLLQTVFIGCLLVSAPVFGYLGDRHSRKATLSFGILLWSGAGLSSSFISYQYSWLFFLSRGVVGAGAASYSTIAPTVLGDLFVKDQRTCVLAVFYIFIPVGSGLGYVLGSVVAELTGNWRWALRIMPCLDALALVLLILLVPDIPRGAAEKQEEVAVEAPRSSWCEDVRYLGRNWSFVFSTLGVTAIAFVTGALGFWAPKFLFEARVVHGLQLPCFQDQCGSQDSLIFGALTVATGIIGVILGAEASRRYKKVNPRAEPLICASSLFATAPCLYLALILASRTLLASYVFLALGELLLSCNWAVVADILLSVVVPRCRGTAEALQITVAHILGDAGSPYLTGLISSVLQTGRPNSYLQRFLSLQHSFLCCAFAIVLGGGCFLLTALHLERDQAQARQSGKGTLESKDATSRNTEHQGLLSSTSTPAEEP", "length": 516, "header": "tr|A0A9J7JX78-1|A0A9J7JX78_CRIGR Isoform 1 of Protein spinster homolog 3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Spns3 PE=3 SV=1 CANONICAL=A0A9J7JX78-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 511, "start_aa": "Thr", "end_pos": 511, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr511", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JX78", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JX78" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113836784", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113836784", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JX78", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JX78" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transmembrane transporter activity", "id": "GO:0022857", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022857", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JX78", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JX78" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 261, "end_pos": 263, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JX78", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JX78" }, { "id": "PS50850", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50850" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Major facilitator superfamily (MFS) profile", "eco_id": "ECO_0000259", "start_pos": 51, "end_pos": 476, "start_aa": "Ala", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 511 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 261, "end_pos": 263 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { 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"https://www.ncbi.nlm.nih.gov/protein/XP_027280615" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. 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This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. 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Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027280866", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027280866" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JXK8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXK8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100773505", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXK8", "locus": {} } ], "crossref": [ { "id": "A0A9J7JXK8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JXK8", "database": "AlphaFoldDB", "categories": [] }, { "id": "100773505", "url": "https://www.ncbi.nlm.nih.gov/gene/100773505", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR010335", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010335", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026664", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026664", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100773505", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773505", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JXK8", "url": "https://www.orthodb.org/?gene=A0A9J7JXK8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23412", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23412", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23412:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23412:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06060", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06060", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027280866", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027280866", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JXK8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXK8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JXK8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXK8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIRTLRQSTLGSRLGALASPGLALLLSLTAHCSGPQTKGFPKGGLNASEANRGNTSLLQNFWCLPASQMPREELSALLRSLASQRVPLKAWQLSCLANLAAQQGLQDDFEFYPPNLLLFYNLSQVSEANCRAFIHHAAQGDTELLANLPNQRVALQHTALACLGRPHLQLSASDLRLLGVLVCDLEAPQIVTSDPHVLKNLLQCPRLTVTQTTAFNTLLASGKTQIGPPGSWNLEELKALGPLATYISPHLWEKVQEAVGLDFFRSVVAAYRASQLSRHDTMRFITNFLESKANSVSSRLKRRTGSACVRGNITAATLHDDLFLVHYDCTQLESCLGTRVLRANLDPLLQHPLPAECQRVVKAKLAQIYPHGIPEDQLRLITSLVYLYSLAEIGQWNITSGDTVMVLLASDAALENQTEAVLQKYLDHNGKVTGALLVAIGGSRLCWMSLKQIQIIQPSEFRLAGAPDISPCPQSRKDVLFAKAREVFRNTSTVGEYYYLIRPYLGGAPLEELQYLAQANISMDIDTFTSLNPFMLKNMSVDNVRNLLGQNVGDLQKARSHPNVILWMHSHNMSDLSEMGLDTSPTLPYVTNRPPNTAYPPSALIHTSNLPGNDGVAPASGSPSFHLGYLSLAVAVPSSLLWLLLCEAPSGPIGTAHKALRPWTLPMVLTQDSQTPEHQIQEQRSC", "length": 686, "header": "tr|A0A9J7JXK8-1|A0A9J7JXK8_CRIGR Isoform 1 of Mesothelin-like protein OS=Cricetulus griseus OX=10029 GN=LOC100773505 PE=3 SV=1 CANONICAL=A0A9J7JXK8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JXK8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXK8/entry", "sequence": { "sequence": "MIRTLRQSTLGSRLGALASPGLALLLSLTAHCSGPQTKGFPKGGLNASEANRGNTSLLQNFWCLPASQMPREELSALLRSLASQRVPLKAWQLSCLANLAAQQGLQDDFEFYPPNLLLFYNLSQVSEANCRAFIHHAAQGDTELLANLPNQRVALQHTALACLGRPHLQLSASDLRLLGVLVCDLEAPQIVTSDPHVLKNLLQCPRLTVTQTTAFNTLLASGKTQIGPPGSWNLEELKALGPLATYISPHLWEKVQEAVGLDFFRSVVAAYRASQLSRHDTMRFITNFLESKANSVSSRLKRRTGSACVRGNITAATLHDDLFLVHYDCTQLESCLGTRVLRANLDPLLQHPLPAECQRVVKAKLAQIYPHGIPEDQLRLITSLVYLYSLAEIGQWNITSGDTVMVLLASDAALENQTEAVLQKYLDHNGKVTGALLVAIGGSRLCWMSLKQIQIIQPSEFRLAGAPDISPCPQSRKDVLFAKAREVFRNTSTVGEYYYLIRPYLGGAPLEELQYLAQANISMDIDTFTSLNPFMLKNMSVDNVRNLLGQNVGDLQKARSHPNVILWMHSHNMSDLSEMGLDTSPTLPYVTNRPPNTAYPPSALIHTSNLPGNDGVAPASGSPSFHLGYLSLAVAVPSSLLWLLLCEAPSGPIGTAHKALRPWTLPMVLTQDSQTPEHQIQEQRSC", "length": 686, "header": "tr|A0A9J7JXK8-1|A0A9J7JXK8_CRIGR Isoform 1 of Mesothelin-like protein OS=Cricetulus griseus OX=10029 GN=LOC100773505 PE=3 SV=1 CANONICAL=A0A9J7JXK8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030385", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030385", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051515", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051515", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755228", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755228", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JZ68", "url": "https://www.orthodb.org/?gene=A0A9J7JZ68", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR32341", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32341", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32341:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32341:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05049", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05049", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027283217", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283217", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JXL9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXL9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JXL9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXL9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JZ68", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZ68", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JZ68-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZ68-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPACRVAPLLTNMEEAVGSPKDKQPTCFSDFVFIGKDSNILTVEVINKIEKAVKGKDWVELVSIVKDIKKKISITTVKIAVTGDSGNGLSSFINTLRLIGHEEEDSAPIGVVRTTQEPAPYFSSEFPNVELWDLPGTGVTSQSMENYLHEMGFDNYDLIIIIASEQFSSNHVKLAKAMQRMRRRFYVVWTKLDRDLSSSPLSEPQLLQSIQKNIWESLQKEGVKEPPIFLVSSMEPLAYGFPELRKMLQDDISNSRNDSLLETFFLICEKTINDKVESIKMCIEADNLRNDFEISDPDNLGECQKVFQEKFGVDDKSLHQLALIMGQPEAYYIDAKQSQVIRMYPHGDSTLSWLYHSGAQVFFKNFDSVYCCFNHNHHRHKQQKCVLEDVAEETKKILRKIVKDTIILP", "length": 409, "header": "tr|A0A9J7JZ68-1|A0A9J7JZ68_CRIGR Isoform 1 of Immunity-related GTPase family M protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100755228 PE=3 SV=1 CANONICAL=A0A9J7JZ68-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JXL9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXL9/entry", "sequence": { "sequence": "MEEAVGSPKDKQPTCFSDFVFIGKDSNILTVEVINKIEKAVKGKDWVELVSIVKDIKKKISITTVKIAVTGDSGNGLSSFINTLRLIGHEEEDSAPIGVVRTTQEPAPYFSSEFPNVELWDLPGTGVTSQSMENYLHEMGFDNYDLIIIIASEQFSSNHVKLAKAMQRMRRRFYVVWTKLDRDLSSSPLSEPQLLQSIQKNIWESLQKEGVKEPPIFLVSSMEPLAYGFPELRKMLQDDISNSRNDSLLETFFLICEKTINDKVESIKMCIEADNLRNDFEISDPDNLGECQKVFQEKFGVDDKSLHQLALIMGQPEAYYIDAKQSQVIRMYPHGDSTLSWLYHSGAQVFFKNFDSVYCCFNHNHHRHKQQKCVLEDVAEETKKILRKIVKDTIILP", "length": 397, "header": "tr|A0A9J7JXL9-1|A0A9J7JZ68_CRIGR Computationally mapped isoform of Immunity-related GTPase family M protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100755228 PE=3 SV=1 CANONICAL=A0A9J7JZ68-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JZ68-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZ68/entry", "sequence": { "sequence": "MPACRVAPLLTNMEEAVGSPKDKQPTCFSDFVFIGKDSNILTVEVINKIEKAVKGKDWVELVSIVKDIKKKISITTVKIAVTGDSGNGLSSFINTLRLIGHEEEDSAPIGVVRTTQEPAPYFSSEFPNVELWDLPGTGVTSQSMENYLHEMGFDNYDLIIIIASEQFSSNHVKLAKAMQRMRRRFYVVWTKLDRDLSSSPLSEPQLLQSIQKNIWESLQKEGVKEPPIFLVSSMEPLAYGFPELRKMLQDDISNSRNDSLLETFFLICEKTINDKVESIKMCIEADNLRNDFEISDPDNLGECQKVFQEKFGVDDKSLHQLALIMGQPEAYYIDAKQSQVIRMYPHGDSTLSWLYHSGAQVFFKNFDSVYCCFNHNHHRHKQQKCVLEDVAEETKKILRKIVKDTIILP", "length": 409, "header": "tr|A0A9J7JZ68-1|A0A9J7JZ68_CRIGR Isoform 1 of Immunity-related GTPase family M protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100755228 PE=3 SV=1 CANONICAL=A0A9J7JZ68-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JXL9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXL9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JXL9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXL9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100755228", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755228", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "autophagosome assembly", "id": "GO:0000045", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000045", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JZ68", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZ68" } ], "pmid": "" }, { "name": "innate immune response", "id": "GO:0045087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045087", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JZ68", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZ68" } ], "pmid": "" }, { "name": "cellular response to interferon-beta", "id": "GO:0035458", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035458", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JZ68", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZ68" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JZ68", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZ68" } ], "pmid": "" }, { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JZ68", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZ68" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JZ68", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZ68" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 257, "end_pos": 259, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JZ68", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZ68" }, { "id": "PS51716", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51716" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "IRG-type G", "eco_id": "ECO_0000259", "start_pos": 75, "end_pos": 251, "start_aa": "Thr", "end_aa": "Asp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 257, "end_pos": 259 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JXR5-1", "uniprot_ac": "A0A9J7JXR5", "uniprot_id": "A0A9J7JXR5_CRIGR", "mass": { "chemical_mass": 29093.0, "monoisotopic_mass": 29093.0 }, "refseq": { "ac": "XP_027286176", "name": "distal membrane-arm assembly complex protein 2 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286176" }, "gene_names": [ { "name": "Dmac2", "type": "recommended", "evidence": [ { "id": "A0A9J7JXR5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXR5" } ] }, { "name": "Dmac2", "type": "synonym", "evidence": [ { "id": "XP_027286176", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286176" } ] } ], "protein_names": [ { "name": "Distal membrane-arm assembly complex protein 2", "type": "recommended", "evidence": [ { "id": "A0A9J7JXR5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXR5/entry#names_and_taxonomy" } ] }, { "name": "ATP synthase subunit s-like protein", "type": "synonym", "evidence": [ { "id": "A0A9J7JXR5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXR5/entry#names_and_taxonomy" } ] }, { "name": "distal membrane-arm assembly complex protein 2 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027286176", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286176" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027286176", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286176" } ] }, { "annotation": "Required for the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I). Involved in the assembly of the distal region of complex I.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JXR5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXR5#function" }, { "database": "UniProtKB", "id": "ARBA00057777", "url": "https://www.uniprot.org/uniprotkb/ARBA00057777#function" }, { "database": "UniProtKB", "id": "A0A9J7H498", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H498#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JXR5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXR5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Dmac2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXR5", "locus": {} } ], "crossref": [ { "id": "A0A9J7JXR5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JXR5", "database": "AlphaFoldDB", "categories": [] }, { "id": "100774519", "url": "https://www.ncbi.nlm.nih.gov/gene/100774519", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100774519", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774519", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JXR5", "url": "https://www.orthodb.org/?gene=A0A9J7JXR5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "XP_027286176", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286176", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H498", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H498", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H498-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H498-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JXR5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXR5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JXR5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXR5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAPRAFLRLGAREWNGRARAIHGPREPVTPDSNQKRRTLLQFLSDHFHDVQALREYLLQKQASRVNWKNRSFPNIQQKYGPDVTGALFILKQGGAVKFQDKEWIRPNERGRFPTEFLTFREVPVEAVDASGCAINYQGMSNLLPLKELRSLSLQRCPNVDDWCLSRLYLLANSLQELSLAGCPQVSERGLACLHHLQNLRRLDISDLPAVSHPGLTQILVEEMLPHCEVFGTDWTRGPKLEAERPPRDTPSPVCP", "length": 256, "header": "tr|A0A9J7JXR5-1|A0A9J7JXR5_CRIGR Isoform 1 of Distal membrane-arm assembly complex protein 2 OS=Cricetulus griseus OX=10029 GN=Dmac2 PE=3 SV=1 CANONICAL=A0A9J7JXR5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H498-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H498/entry", "sequence": { "sequence": "MAAPRAFLRLGAREWNGRARAIHGPREPVTPDSNQKRRTLLQFLSDHFHDVQALREYLLQKQASRVNWKNRSFPNIQQKYGPDVTGALFILKQGGAVKFQDKEWIRPNERGRFPTEFLTFREVPVEAVDASGCAINYQGMSNLLPLKELRSLSLQRCPNVDDWCLSRLYLLANSLQELSLAGCPQVSERGLACLHHLQNLRRLDISDLPAVSHPGLTQILVEEMLPHCEVFGTDWTRGPKLEADCP", "length": 246, "header": "tr|A0A9J7H498-1|A0A9J7H498_CRIGR Computationally mapped isoform of Distal membrane-arm assembly complex protein 2 OS=Cricetulus griseus OX=10029 GN=Dmac2 PE=3 SV=1 CANONICAL=A0A9J7JXR5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JXR5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXR5/entry", "sequence": { "sequence": "MAAPRAFLRLGAREWNGRARAIHGPREPVTPDSNQKRRTLLQFLSDHFHDVQALREYLLQKQASRVNWKNRSFPNIQQKYGPDVTGALFILKQGGAVKFQDKEWIRPNERGRFPTEFLTFREVPVEAVDASGCAINYQGMSNLLPLKELRSLSLQRCPNVDDWCLSRLYLLANSLQELSLAGCPQVSERGLACLHHLQNLRRLDISDLPAVSHPGLTQILVEEMLPHCEVFGTDWTRGPKLEAERPPRDTPSPVCP", "length": 256, "header": "tr|A0A9J7JXR5-1|A0A9J7JXR5_CRIGR Isoform 1 of Distal membrane-arm assembly complex protein 2 OS=Cricetulus griseus OX=10029 GN=Dmac2 PE=3 SV=1 CANONICAL=A0A9J7JXR5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027283445.1. 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This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. 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"length": 1129, "header": "tr|A0A9J7JXT2-1|A0A9J7JXT2_CRIGR Isoform 1 of Small G protein signaling modulator 1 OS=Cricetulus griseus OX=10029 GN=Sgsm1 PE=3 SV=1 CANONICAL=A0A9J7JXT2-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 458, "start_aa": "Thr", "end_pos": 458, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr458", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JXT2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXT2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JXT2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXT2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100760121", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760121", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JXT2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXT2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasmic vesicle", "id": "GO:0031410", "url": 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"sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JXT6-1", "uniprot_ac": "A0A9J7JXT6", "uniprot_id": "A0A9J7JXT6_CRIGR", "mass": { "chemical_mass": 25896.0, "monoisotopic_mass": 25896.0 }, "refseq": { "ac": "XP_027286260", "name": "tetratricopeptide repeat protein 9B", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286260" }, "gene_names": [ { "name": "LOC113837206", "type": "recommended", "evidence": [ { "id": "A0A9J7JXT6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXT6" } ] }, { "name": "LOC113837206", "type": "synonym", "evidence": [ { "id": "XP_027286260", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286260" } ] } ], "protein_names": [ { "name": "Tetratricopeptide repeat protein 9B", "type": "synonym", "evidence": [ { "id": "A0A9J7JXT6", "database": "UniProtKB", "url": 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"annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027290562.1. 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"evidence": [ { "database": "UniProtKB", "id": "A0A9J7JXU0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXU0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 282, "end_pos": 284, "annotation": "n_glycosylation_sequon" }, { "start_pos": 48, "end_pos": 50, "annotation": "n_glycosylation_sequon" }, { "start_pos": 85, "end_pos": 87, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JXU0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXU0" }, { "id": "PS50102", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50102" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRM", "eco_id": "ECO_0000259", "start_pos": 38, "end_pos": 116, "start_aa": "Thr", "end_aa": "Pro", "glycosite_overlap": [] 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Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: incomplete on the amino end.", "evidence": [ { "database": "RefSeq", "id": "XP_027283555", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283555" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JXV0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXV0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC103163525", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXV0", "locus": {} } ], "crossref": [ { "id": "A0A9J7JXV0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JXV0", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00051", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00051", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "103163525", "url": "https://www.ncbi.nlm.nih.gov/gene/103163525", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018247", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018247", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043520", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043520", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:103163525", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103163525", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JXV0", "url": "https://www.orthodb.org/?gene=A0A9J7JXV0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47500", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47500", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47500:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47500:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13833", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13833", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027283555", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027283555", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JXV0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXV0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JXV0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXV0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "SGSRGQKTKRSPSTLRRPPQKPRSLLTRDIREEQAGRVHKGRLRLQTDQLSQSELEATMATKEQQTIVRAREFKDPKATQPYWSDLDTKSQSILTDDSVAPLTPRQLAAFQDVFKLFSCSPTGTVDMQSMKVALRNVGIQLGPQEMCEALRLADLDGDGIVSFKDFLGVLTDNHLLAQCISQMRSNRVFEPPGLQTLLLEVLFKLLRQGFVPSKSGQEVTSYYSKKQRALRLNTHFKCRVRGQGRPVRAHTGLNYFCQAARLSGLSSTQLARSLHTLYREGGRSPYSQIPNLATRSRPDRRISNRSPGPDVRLPKPHQPGRPKFPPNLGPLSKGPLHPHAGLVSQPLEQMRPAKLAPSPTTLVQKHPSSPSPACFQRCAMKSLYK", "length": 385, "header": "tr|A0A9J7JXV0-1|A0A9J7JXV0_CRIGR Isoform 1 of Spermatogenesis-associated protein 21-like OS=Cricetulus griseus OX=10029 GN=LOC103163525 PE=4 SV=1 CANONICAL=A0A9J7JXV0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JXV0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXV0/entry", "sequence": { "sequence": "SGSRGQKTKRSPSTLRRPPQKPRSLLTRDIREEQAGRVHKGRLRLQTDQLSQSELEATMATKEQQTIVRAREFKDPKATQPYWSDLDTKSQSILTDDSVAPLTPRQLAAFQDVFKLFSCSPTGTVDMQSMKVALRNVGIQLGPQEMCEALRLADLDGDGIVSFKDFLGVLTDNHLLAQCISQMRSNRVFEPPGLQTLLLEVLFKLLRQGFVPSKSGQEVTSYYSKKQRALRLNTHFKCRVRGQGRPVRAHTGLNYFCQAARLSGLSSTQLARSLHTLYREGGRSPYSQIPNLATRSRPDRRISNRSPGPDVRLPKPHQPGRPKFPPNLGPLSKGPLHPHAGLVSQPLEQMRPAKLAPSPTTLVQKHPSSPSPACFQRCAMKSLYK", "length": 385, "header": "tr|A0A9J7JXV0-1|A0A9J7JXV0_CRIGR Isoform 1 of Spermatogenesis-associated protein 21-like OS=Cricetulus griseus OX=10029 GN=LOC103163525 PE=4 SV=1 CANONICAL=A0A9J7JXV0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JXV0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXV0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JXV0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXV0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:103163525", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103163525", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JXV0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXV0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 304, "end_pos": 306, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JXV0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXV0" }, { "id": "PS50222", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50222" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EF-hand", "eco_id": "ECO_0000259", "start_pos": 141, "end_pos": 176, "start_aa": "Leu", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 304, "end_pos": 306 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7K5A9-1", "uniprot_ac": "A0A9J7K5A9", "uniprot_id": "A0A9J7K5A9_CRIGR", "mass": { "chemical_mass": 132210.0, "monoisotopic_mass": 132210.0 }, "refseq": { "ac": "XP_035300219", "name": "SR-related and CTD-associated factor 4 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300219" }, "gene_names": [ { "name": "Scaf4", "type": "recommended", "evidence": [ { "id": "A0A9J7K5A9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5A9" } ] }, { "name": "Scaf4", "type": "synonym", "evidence": [ { "id": "XP_035300219", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300219" } ] } ], "protein_names": [ { "name": "SR-related and CTD-associated factor 4 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035300219", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300219" }, { "id": "A0A9J7K5A9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5A9/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 60 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) and transcript sequence (JI875496.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035300219", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300219" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K5A9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5A9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Scaf4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5A9", "locus": {} } ], "crossref": [ { "id": "A0A9J7K5A9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K5A9", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd12461", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12461", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd17005", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17005", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100765380", "url": "https://www.ncbi.nlm.nih.gov/gene/100765380", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006569", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006569", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008942", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008942", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034369", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034369", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051485", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051485", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100765380", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765380", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K5A9", "url": "https://www.orthodb.org/?gene=A0A9J7K5A9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23140", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23140", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23140:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23140:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF04818", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04818", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035300219", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300219", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GWH1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GWH1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GWH1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GWH1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GX87", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GX87", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GX87-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GX87-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GYH1", 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"MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKIEIIQPLLDMAAGTSNAVPVADNVTNNEGSPPPPVKASSELAQVPTNSMPPVAQLPSSDAFAAVAQLFQTTQGQQLQQILQTFQQPPKPQSPALDNAVMAQVQAITAQLKTAPTQPPEQKAAFPPPEQKTAFDKKLLDRFDYDDEPEAMEDTKKEDTAVTVAAPSAAAAPPAPSVATPAIAPALPVPSATSPPPPQVPFGYPGDSMQQPAYTQHQNMDQFPPRMMGIQQDAVHHQVPLPPNGQMPGFGLLSAPPFPPMPQPGMAQPGMPQPGMPQPGMAQPGMPQPGMTQPGLPQPGMAQPGMPQPGMAQPGMPQPGMAQPGMPQSGIPPTPPVQPTFQPTFQPQNEPLSQKPHQQEMEVDQPCVPEAKRHVPDSRKSRSRSASRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSPRSRSQERRDREKERERRQKGLPQIKSETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIKADYKQYWDVELGVTYVPWDKVKPEELESFCEGGMLDGDTLNPEWKGIPKKPENEVAQNGGGEASHTEPVSPVPKTLPVPVPPIPVPAPITVPPPQVPPHQPGPPVVGALQPPAFTPPLGIPPPGFGPGVPPPPPPPPFLRPGFNPMHLPPGFLPPGPPPPITPPVSIPPPHTPPISIPNSTIAGINEDTTKDLSIGNPIPTVVSGARGNAESADSAKMYGSAVPPAAPTNLPTPPVTQPVSLLGTQGVAPGPVIGLQAPSTGLLGARPGLIPLQRPPGVPPPHLQRFPMMPPRPMPPPMMHRGPPPGPGGFAMPPPHGMKGPFPPHGPFVRPGGMPGLGGPGPGPGGPEDREGRQQQPQQQQQQQQQQPQQSQPQQPPASQQPAPAQQQQQPQQFRNDNRQQFNSGRDQERFGRRSFGNRVENDRERYGNRNDDRDNSNRERREWGRRSPDRDRHRDLEDRNRRSSGHRDRDRDSRDRESRREKEDNRREKHELTDRAGSNKASEPPLSQVGDVDTVSELDKGEAMAAVVKPSEESPAEATSSVEPEKDSGSAAEAPR", "length": 1212, "header": "tr|A0A9J7K5A9-1|A0A9J7K5A9_CRIGR Isoform 1 of SR-related and CTD-associated factor 4 isoform X2 OS=Cricetulus griseus OX=10029 GN=Scaf4 PE=4 SV=1 CANONICAL=A0A9J7K5A9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GWH1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GWH1/entry", "sequence": { "sequence": "MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKIEIIQPLLDMAAGTSNAVPVADNVTNNEGSPPPPVKASSELAQVPTNSMPPVAQLPSSDAFAAVAQLFQTTQGQQLQQILQTFQQPPKPQSPALDNAVMAQVQAITAQLKTAPTQPPEQKAAFPPPEQKTAFDKKLLDRFDYDDEPEAMEDTKKEDTAVTVAAPSAAAAPPAPSVATPAIAPALPVPSATSPPPPQVPFGYPGDSMQQPAYTQHQNMDQFPPRMMGIQQDAVHHQVPLPPNGQMPGFGLLSAPPFPPMPQPGMAQPGMPQPGMPQPGMAQPGMPQPGMTQPGLPQPGMAQPGMPQPGMAQPGMPQPGMAQPGMPQSGIPPTPPVQPTFQPTFQPQNEPLSQKPHQQEMEVDQPCVPEAKRHVPDSRKSRSRSASRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSPRSRSQERRDREKERERRQKGLPQIKSETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIKADYKQYWDVELGVTYVPWDKVKPEELESFCEGGMLDGDTLNPEWKGIPKKPENEVAQNGGGEASHTEPVSPVPKTLPVPVPPIPVPAPITVPPPQVPPHQPGPPVVGALQPPAFTPPLGIPPPGFGPGVPPPPPPPPFLRPGFNPMHLPPGFLPPGPPPPITPPVSIPPPHTPPISIPNSTIAGINEDTTKDLSIGNPIPTVVSGARGNAESADSAKMYGSAVPPAAPTNLPTPPVTQPVSLLGEFIQKNHSSTTLIEERKNHVVVSQWIGSWVPVLLVLLWEHGARCSLSSWCSNVFCKSVEGDAVLTRTP", "length": 966, "header": "tr|A0A9J7GWH1-1|A0A9J7GWH1_CRIGR Computationally mapped isoform of SR-related and CTD-associated factor 4 isoform X8 OS=Cricetulus griseus OX=10029 GN=Scaf4 PE=4 SV=1 CANONICAL=A0A9J7K5A9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GX87-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GX87/entry", "sequence": { "sequence": "MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKIEIIQPLLDMAAGTSNAVPVADNVTNNEGSPPPPVKASSELAQVPTNSMPPVAQLPSSDAFAAVAQLFQTTQGQQLQQILQTFQQPPKPQSPALDNAVMAQVQAITAQLKTAPTQPPEQKAAFPPPEQKTAFDKKLLDRFDYDDEPEAMEDTKKEDTAVTVAAPSAAAAPPAPSVATPAIAPALPVPSATSPPPPQVPFGYPGDSMQQPAYTQHQNMDQFPPRMMGIQQDAVHHQVPLPPNGQMPGFGLLSAPPFPPMPQPGMAQPGMPQPGMPQPGMAQPGMPQPGMTQPGLPQPGMAQPGMPQPGMAQPGMPQPGMAQPGMPQSGIPPTPPVQPTFQPTFQPQNEPLSQKPHQQEMEVDQPCVPEAKRHVPDSRKSRSRSASRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSPRSRSQERRDREKERERRQKGLPQIKSETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIKADYKQYWDVELGVTYVPWDKVKPEELESFCEGGMLDGDTLNPEWKGIPKKPENEVAQNGGGEASHTEPVSPVPKTLPVPVPPIPVPAPITVPPPQVPPHQPGPPVVGALQPPAFTPPLGIPPPGFGPGVPPPPPPPPFLRPGFNPMHLPPGFLPPGPPPPITPPVSIPPPHTPPISIPNSTIAGINEDTTKDLSIGNPIPTVVSGARGNAESADSAKMYGSAVPPAAPTNLPTPPVTQPVSLLGTQGVAPGPVIGLQAPSTGLLGARPGLIPLQRPPGVPPPHLQRFPMMPPRPMPPPMMHRGPPPGPGGFAMPPPHGMKGPFPPHGPFVRPGGMPGLGGPGPGPGGPEDREGRQQQPQQQQQQQQQQPQQSQPQQPPASQQPAPAQQQQQPQQFRNDNRQQFNSGLKKILRIKGQLKGSAY", "length": 1076, "header": "tr|A0A9J7GX87-1|A0A9J7GX87_CRIGR Computationally mapped isoform of SR-related and CTD-associated factor 4 isoform X7 OS=Cricetulus griseus OX=10029 GN=Scaf4 PE=4 SV=1 CANONICAL=A0A9J7K5A9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GYH1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GYH1/entry", "sequence": { "sequence": "MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKIEIIQPLLDMAAGTSNAVPVADNVTNNEGSPPPPVKASSELAQVPTNSMPPVAQLPSSDAFAAVAQLFQTTQGQQLQQILQTFQQPPKPQSPALDNAVMAQVQAITAQLKTAPTQPPEQKAAFPPPEQKTAFDKKLLDRFDYDDEPEAMEDTKKEDTAVTVAAPSAAAAPPAPSVATPAIAPALPVPSATSPPPPQVPFGYPGDSMQQPAYTQHQNMDQFPPRMMGIQQDAVHHQVPLPPNGQMPGFGLLSAPPFPPMPQPGMAQPGMPQPGMPQPGMAQPGMPQPGMTQPGLPQPGMAQPGMPQPGMAQPGMPQPGMAQPGMPQSGIPPTPPVQPTFQPTFQPQNEPLSQKPHQQEMEVDQPCVPEAKRHVPDSRKSRSRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSPRSRSQERRDREKERERRQKGLPQIKSETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIKADYKQYWDVELGVTYVPWDKVKPEELESFCEGGMLDGDTLNPEWKGIPKKPENEVAQNGGGEASHTEPVSPVPKTLPVPVPPIPVPAPITVPPPQVPPHQPGPPVVGALQPPAFTPPLGIPPPGFGPGVPPPPPPPPFLRPGFNPMHLPPGFLPPGPPPPITPPVSIPPPHTPPISIPNSTIAGINEDTTKDLSIGNPIPTVVSGARGNAESADSAKMYGSAVPPAAPTNLPTPPVTQPVSLLGTQGVAPGPVIGLQAPSTGLLGARPGLIPLQRPPGVPPPHLQRFPMMPPRPMPPPMMHRGPPPGPGGFAMPPPHGMKGPFPPHGPFVRPGGMPGLGGPGPGPGGPEDREGRQQQPQQQQQQQQQQPQQSQPQQPPASQQPAPAQQQQQPQQFRNDNRQQFNSGRDQERFGRRSFGNRVENDRERYGNRNDDRDNSNRERREWGRRSPDRDRHRDLEDRNRRSSGHRDRDRDSRDRESRREKEDNRREKHELTDRAGSNKASEPPLSQVGDVDTVSELDKGEAMAAVVKPSEESPAEATSSVEPEKDSGSAAEAPR", "length": 1208, "header": "tr|A0A9J7GYH1-1|A0A9J7GYH1_CRIGR Computationally mapped isoform of SR-related and CTD-associated factor 4 isoform X3 OS=Cricetulus griseus OX=10029 GN=Scaf4 PE=4 SV=1 CANONICAL=A0A9J7K5A9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JXX2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXX2/entry", "sequence": { "sequence": "MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKIEIIQPLLDMAAGTSNAVPVADNVTNNEGSPPPPVKASSELAQVPTNSMPPVAQLPSSDAFAAVAQLFQTTQGQQLQQILQTFQQPPKPQSPALDNAVMAQVQAITAQLKTAPTQPPEQKAAFPPPEQKTAFDKKLLDRFDYDDEPEAMEDTKKEDTAVTVAAPSAAAAPPAPSVATPAIAPALPVPSATSPPPPQVPFGYPGDSMQQPAYTQHQNMDQFPPRMMGIQQDAVHHQVPLPPNGQMPGFGLLSAPPFPPMPQPGMAQPGMPQPGMPQPGMAQPGMPQPGMTQPGLPQPGMAQPGMPQPGMAQPGMPQPGMAQPGMPQSGIPPTPPVQPTFQPTFQPQNEPLSQKPHQQEMEVDQPCVPEAKRHVPDSRKSRSRSASRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSPRSRSQERRDREKERERRQKGLPQIKSETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIKADYKQYWDVELGVTYVPWDKVKPEELESFCEGGMLDGDTLNPEWKGIPKKPENEVAQNGGGEASHTEPVSPVPKTLPVPVPPIPVPAPITVPPPQVPPHQPGPPVVGALQPPAFTPPLGIPPPGFGPGVPPPPPPPPFLRPGFNPMHLPPGFLPPGPPPPITPPVSIPPPHTPPISIPNLVSGARGNAESADSAKMYGSAVPPAAPTNLPTPPVTQPVSLLGTQGVAPGPVIGLQAPSTGLLGARPGLIPLQRPPGVPPPHLQRFPMMPPRPMPPPMMHRGPPPGPGGFAMPPPHGMKGPFPPHGPFVRPGGMPGLGGPGPGPGGPEDREGRQQQPQQQQQQQQQQPQQSQPQQPPASQQPAPAQQQQQPQQFRNDNRQQFNSGRDQERFGRRSFGNRVENDRERYGNRNDDRDNSNRERREWGRRSPDRDRHRDLEDRNRRSSGHRDRDRDSRDRESRREKEDNRREKHELTDRAGSNKASEPPLSQVGDVDTVSELDKGEAMAAVVKPSEESPAEATSSVEPEKDSGSAAEAPR", "length": 1190, "header": "tr|A0A9J7JXX2-1|A0A9J7K5A9_CRIGR Computationally mapped isoform of SR-related and CTD-associated factor 4 isoform X2 OS=Cricetulus griseus OX=10029 GN=Scaf4 PE=4 SV=1 CANONICAL=A0A9J7K5A9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K5A9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5A9/entry", "sequence": { "sequence": "MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKIEIIQPLLDMAAGTSNAVPVADNVTNNEGSPPPPVKASSELAQVPTNSMPPVAQLPSSDAFAAVAQLFQTTQGQQLQQILQTFQQPPKPQSPALDNAVMAQVQAITAQLKTAPTQPPEQKAAFPPPEQKTAFDKKLLDRFDYDDEPEAMEDTKKEDTAVTVAAPSAAAAPPAPSVATPAIAPALPVPSATSPPPPQVPFGYPGDSMQQPAYTQHQNMDQFPPRMMGIQQDAVHHQVPLPPNGQMPGFGLLSAPPFPPMPQPGMAQPGMPQPGMPQPGMAQPGMPQPGMTQPGLPQPGMAQPGMPQPGMAQPGMPQPGMAQPGMPQSGIPPTPPVQPTFQPTFQPQNEPLSQKPHQQEMEVDQPCVPEAKRHVPDSRKSRSRSASRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSPRSRSQERRDREKERERRQKGLPQIKSETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIKADYKQYWDVELGVTYVPWDKVKPEELESFCEGGMLDGDTLNPEWKGIPKKPENEVAQNGGGEASHTEPVSPVPKTLPVPVPPIPVPAPITVPPPQVPPHQPGPPVVGALQPPAFTPPLGIPPPGFGPGVPPPPPPPPFLRPGFNPMHLPPGFLPPGPPPPITPPVSIPPPHTPPISIPNSTIAGINEDTTKDLSIGNPIPTVVSGARGNAESADSAKMYGSAVPPAAPTNLPTPPVTQPVSLLGTQGVAPGPVIGLQAPSTGLLGARPGLIPLQRPPGVPPPHLQRFPMMPPRPMPPPMMHRGPPPGPGGFAMPPPHGMKGPFPPHGPFVRPGGMPGLGGPGPGPGGPEDREGRQQQPQQQQQQQQQQPQQSQPQQPPASQQPAPAQQQQQPQQFRNDNRQQFNSGRDQERFGRRSFGNRVENDRERYGNRNDDRDNSNRERREWGRRSPDRDRHRDLEDRNRRSSGHRDRDRDSRDRESRREKEDNRREKHELTDRAGSNKASEPPLSQVGDVDTVSELDKGEAMAAVVKPSEESPAEATSSVEPEKDSGSAAEAPR", "length": 1212, "header": "tr|A0A9J7K5A9-1|A0A9J7K5A9_CRIGR Isoform 1 of SR-related and CTD-associated factor 4 isoform X2 OS=Cricetulus griseus OX=10029 GN=Scaf4 PE=4 SV=1 CANONICAL=A0A9J7K5A9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K750-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K750/entry", "sequence": { "sequence": "MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKIEIIQPLLDMAAGTSNAVPVADNVTNNEGSPPPPVKASSELAQVPTNSMPPVAQLPSSDAFAAVAQLFQTTQGQQKLLDRFDYDDEPEAMEDTKKEDTAVTVAAPSAAAAPPAPSVATPAIAPALPVPSATSPPPPQVPFGYPGDSMQQPAYTQHQNMDQFPPRMMGIQQDAVHHQVPLPPNGQMPGFGLLSAPPFPPMPQPGMAQPGMPQPGMPQPGMAQPGMPQPGMTQPGLPQPGMAQPGMPQPGMAQPGMPQPGMAQPGMPQSGIPPTPPVQPTFQPTFQPQNEPLSQKPHQQEMEVDQPCVPEAKRHVPDSRKSRSRSASRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSPRSRSQERRDREKERERRQKGLPQIKSETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIKADYKQYWDVELGVTYVPWDKVKPEELESFCEGGMLDGDTLNPEWKGIPKKPENEVAQNGGGEASHTEPVSPVPKTLPVPVPPIPVPAPITVPPPQVPPHQPGPPVVGALQPPAFTPPLGIPPPGFGPGVPPPPPPPPFLRPGFNPMHLPPGFLPPGPPPPITPPVSIPPPHTPPISIPNSTIAGINEDTTKDLSIGNPIPTVVSGARGNAESADSAKMYGSAVPPAAPTNLPTPPVTQPVSLLGTQGVAPGPVIGLQAPSTGLLGARPGLIPLQRPPGVPPPHLQRFPMMPPRPMPPPMMHRGPPPGPGGFAMPPPHGMKGPFPPHGPFVRPGGMPGLGGPGPGPGGPEDREGRQQQPQQQQQQQQQQPQQSQPQQPPASQQPAPAQQQQQPQQFRNDNRQQFNSGRDQERFGRRSFGNRVENDRERYGNRNDDRDNSNRERREWGRRSPDRDRHRDLEDRNRRSSGHRDRDRDSRDRESRREKEDNRREKHELTDRAGSNKASEPPLSQVGDVDTVSELDKGEAMAAVVKPSEESPAEATSSVEPEKDSGSAAEAPR", "length": 1153, "header": "tr|A0A9J7K750-1|A0A9J7K750_CRIGR Computationally mapped isoform of SR-related and CTD-associated factor 4 isoform X6 OS=Cricetulus griseus OX=10029 GN=Scaf4 PE=4 SV=1 CANONICAL=A0A9J7K5A9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K8J3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8J3/entry", "sequence": { "sequence": "MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKIEIIQPLLDMAAGTSNAVPVADNVTNNEGSPPPPVKASSELAQVPTNSMPPVAQLPSSDAFAAVAQLFQTTQGQQLQQILQTFQQPPKPQSPALDNAVMAQVQAITAQLKTAPTQPPEQKAAFPPPEQKTAFDKKLLDRFDYDDEPEAMEDTKKEDTAVTVAAPSAAAAPPAPSVATPAIAPALPVPSATSPPPPQVPFGYPGDSMQQPAYTQHQNMDQFPPRMMGIQQDAVHHQVPLPPNGQMPGFGLLSAPPFPPMPQPGMAQPGMPQPGMPQPGMAQPGMPQPGMTQPGLPQPGMAQPGMPQPGMAQPGMPQPGMAQPGMPQSGIPPTPPVQPTFQPTFQPQNEPLSQKPHQQEMEVDQPCVPEAKRHVPDSRKSRSRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSPRSRSQERRDREKERERRQKGLPQIKSETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIKADYKQYWDVELGVTYVPWDKVKPEELESFCEGGMLDGDTLNPEWKGIPKKPENEVAQNGGGEASHTEPVSPVPKTLPVPVPPIPVPAPITVPPPQVPPHQPGPPVVGALQPPAFTPPLGIPPPGFGPGVPPPPPPPPFLRPGFNPMHLPPGFLPPGPPPPITPPVSIPPPHTPPISIPNLVSGARGNAESADSAKMYGSAVPPAAPTNLPTPPVTQPVSLLGTQGVAPGPVIGLQAPSTGLLGARPGLIPLQRPPGVPPPHLQRFPMMPPRPMPPPMMHRGPPPGPGGFAMPPPHGMKGPFPPHGPFVRPGGMPGLGGPGPGPGGPEDREGRQQQPQQQQQQQQQQPQQSQPQQPPASQQPAPAQQQQQPQQFRNDNRQQFNSGRDQERFGRRSFGNRVENDRERYGNRNDDRDNSNRERREWGRRSPDRDRHRDLEDRNRRSSGHRDRDRDSRDRESRREKEDNRREKHELTDRAGSNKASEPPLSQVGDVDTVSELDKGEAMAAVVKPSEESPAEATSSVEPEKDSGSAAEAPR", "length": 1186, "header": "tr|A0A9J7K8J3-1|A0A9J7K8J3_CRIGR Computationally mapped isoform of SR-related and CTD-associated factor 4 isoform X5 OS=Cricetulus griseus OX=10029 GN=Scaf4 PE=4 SV=1 CANONICAL=A0A9J7K5A9-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 301, "start_aa": "Thr", "end_pos": 301, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr301", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 455, "start_aa": "Thr", "end_pos": 455, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr455", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 816, "start_aa": "Thr", "end_pos": 816, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr816", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JXX2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXX2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JXX2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXX2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100765380", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765380", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K5A9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5A9" } ], "pmid": "" }, { "name": "RNA polymerase II C-terminal domain phosphoserine binding", "id": "GO:1990269", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990269", "evidence": [ { "database": 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"url": "https://www.ebi.ac.uk/interpro/entry/IPR000483", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005492", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005492", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009039", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009039", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051295", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051295", "database": "InterPro", "categories": [ "Protein 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ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027287093", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287093" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JYA4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYA4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100752375", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYA4", "locus": {} } ], "crossref": [ { "id": "A0A9J7JYA4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JYA4", "database": "AlphaFoldDB", "categories": [] }, { "id": "100752375", "url": "https://www.ncbi.nlm.nih.gov/gene/100752375", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000863", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000863", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752375", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752375", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JYA4", "url": "https://www.orthodb.org/?gene=A0A9J7JYA4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11783", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11783", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00685", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00685", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027287093", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287093", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JYA4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYA4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JYA4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYA4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSDYYWFEGIPFPKLGFGKEIIKEIRHKFVIRDEDTIILAYPKSGTNWLIETVCLIQKKGNPEWVQSVPVWDRSPWIETEVGYQTLINKKGPRMITSHLPLHLFPRSFFSSKAKVIYVIRNPRDALVSGYFFWSETKFAKNPESMKTHFESFLKGNVPYGSWFEHTRGWLSMRESENFLLLCYEDLKKDPRRSIEKICDFLGKKLDPEELDMVLKYSSFHVMKENKMSNFSLINEDMVNEGFVFMRKGTTGDWKNHFTEEQVEAFDKVFQENMAGFPPGLFPWE", "length": 284, "header": "tr|A0A9J7JYA4-1|A0A9J7JYA4_CRIGR Isoform 1 of Sulfotransferase OS=Cricetulus griseus OX=10029 GN=LOC100752375 PE=3 SV=1 CANONICAL=A0A9J7JYA4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JYA4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYA4/entry", "sequence": { "sequence": "MSDYYWFEGIPFPKLGFGKEIIKEIRHKFVIRDEDTIILAYPKSGTNWLIETVCLIQKKGNPEWVQSVPVWDRSPWIETEVGYQTLINKKGPRMITSHLPLHLFPRSFFSSKAKVIYVIRNPRDALVSGYFFWSETKFAKNPESMKTHFESFLKGNVPYGSWFEHTRGWLSMRESENFLLLCYEDLKKDPRRSIEKICDFLGKKLDPEELDMVLKYSSFHVMKENKMSNFSLINEDMVNEGFVFMRKGTTGDWKNHFTEEQVEAFDKVFQENMAGFPPGLFPWE", "length": 284, "header": "tr|A0A9J7JYA4-1|A0A9J7JYA4_CRIGR Isoform 1 of Sulfotransferase OS=Cricetulus griseus OX=10029 GN=LOC100752375 PE=3 SV=1 CANONICAL=A0A9J7JYA4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [ "enzyme" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_003613584.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Apr 30, 2014 this sequence version replaced XP_003495242.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003495242", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495242" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JYJ6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYJ6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Grip2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYJ6", "locus": {} } ], "crossref": [ { "id": "A0A9J7JYJ6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JYJ6", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd06681", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06681", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06682", "url": 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}, { "id": "PTHR46227", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46227", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46227:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46227:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00595", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00595", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17820", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17820", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003495242", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495242", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JYJ6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYJ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JYJ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYJ6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLCGLGRDSPAEADDGPYSKGGKDAVGPDGTLVCRRQSIPEEFRGITMVELIKREGSTLGLTISGGTDKDGKPRVSNLRPGGLAARSDLLNVGDYIRSVNGIHLTRLRHDEIITLLKNVGERVVLEVEYELPPPAPENNPRIISKTVDVSLYKEGNSFGFVLRGGAHEDLHKSRPLVLTYVRPGGPADREGSLKVGDRLLSIDGIPLHGASHATAIATLQQCSHEALFQVEYDVATPDTVANASGPLVVEIAKTPGSALGISLTTGSHRNKPAITIDRIKPASVVDRSGALHAGDHILAIDGTSTEHCSLVEATKLLASVTEKVRLEILPAPQSRRPLKPPEAVRVQRSEQLHRWDPCGSTCHSPRPSHCRAPTWAPGSQDQSRSLSSTPFSSPTVNPAFPCANASTLPRGPMSPRTTAGRRRQRRKEHRSSLSLASSTVGPGGQIVHTETTEVVLCGDPLSGFGLQLQGGIFATETLSSPPLVRFIEPDSPAERCGLLQVGDRVLAINGIATEDGTMEEANQLLRDAALARKVVLEIEFDVAESVIPSSGTFHVKLPKRRGVELGITISSASRKRGEPLIISDIKKGSVAHRTGTLEPGDKLLAIDNIRLDHCPMEDAVQILRQCEDVVKLKIRKDEDNSDEQESTGAVSYTVELKRYGGPLGITISGTEEPFDPIIISGLTKRGLAERTGAIHVGDRILAINSVSLKGRPLSEAIHLLQVAGETVTLKIKKQLDRPFLPRQSGSLSEASDVDEDPPEALKGGSLTARFSPAVPSVDSAVESWGSSATEGGFGGPGSYTPQVAVRSVTPQEWRSSRLKSSPPPIESRRTSYTPGPADESFPEEEEGDWDPPMSPAPGPAREEGFWRVFGEALEDLESCGQSELLRELEASIMTGTVQTVAVDGRPGPRPWRRSREIRTSSEDLQELLLPTPLEMHRVTLHKDPVRNDFGFSVSDGLLEKGVYVHTVRTDGPAHHGGLKPFDRLLQVNHVRTRDFDCCLAVPLLAEAGDILELVISRNPLAQSRRTPRTPGPSSPQML", "length": 1038, "header": "tr|A0A9J7JYJ6-1|A0A9J7JYJ6_CRIGR Isoform 1 of Glutamate receptor-interacting protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Grip2 PE=4 SV=1 CANONICAL=A0A9J7JYJ6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JYJ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYJ6/entry", "sequence": { "sequence": "MLCGLGRDSPAEADDGPYSKGGKDAVGPDGTLVCRRQSIPEEFRGITMVELIKREGSTLGLTISGGTDKDGKPRVSNLRPGGLAARSDLLNVGDYIRSVNGIHLTRLRHDEIITLLKNVGERVVLEVEYELPPPAPENNPRIISKTVDVSLYKEGNSFGFVLRGGAHEDLHKSRPLVLTYVRPGGPADREGSLKVGDRLLSIDGIPLHGASHATAIATLQQCSHEALFQVEYDVATPDTVANASGPLVVEIAKTPGSALGISLTTGSHRNKPAITIDRIKPASVVDRSGALHAGDHILAIDGTSTEHCSLVEATKLLASVTEKVRLEILPAPQSRRPLKPPEAVRVQRSEQLHRWDPCGSTCHSPRPSHCRAPTWAPGSQDQSRSLSSTPFSSPTVNPAFPCANASTLPRGPMSPRTTAGRRRQRRKEHRSSLSLASSTVGPGGQIVHTETTEVVLCGDPLSGFGLQLQGGIFATETLSSPPLVRFIEPDSPAERCGLLQVGDRVLAINGIATEDGTMEEANQLLRDAALARKVVLEIEFDVAESVIPSSGTFHVKLPKRRGVELGITISSASRKRGEPLIISDIKKGSVAHRTGTLEPGDKLLAIDNIRLDHCPMEDAVQILRQCEDVVKLKIRKDEDNSDEQESTGAVSYTVELKRYGGPLGITISGTEEPFDPIIISGLTKRGLAERTGAIHVGDRILAINSVSLKGRPLSEAIHLLQVAGETVTLKIKKQLDRPFLPRQSGSLSEASDVDEDPPEALKGGSLTARFSPAVPSVDSAVESWGSSATEGGFGGPGSYTPQVAVRSVTPQEWRSSRLKSSPPPIESRRTSYTPGPADESFPEEEEGDWDPPMSPAPGPAREEGFWRVFGEALEDLESCGQSELLRELEASIMTGTVQTVAVDGRPGPRPWRRSREIRTSSEDLQELLLPTPLEMHRVTLHKDPVRNDFGFSVSDGLLEKGVYVHTVRTDGPAHHGGLKPFDRLLQVNHVRTRDFDCCLAVPLLAEAGDILELVISRNPLAQSRRTPRTPGPSSPQML", "length": 1038, "header": "tr|A0A9J7JYJ6-1|A0A9J7JYJ6_CRIGR Isoform 1 of Glutamate receptor-interacting protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Grip2 PE=4 SV=1 CANONICAL=A0A9J7JYJ6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JYJ6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYJ6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JYJ6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYJ6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100774140", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774140", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "neurotransmitter receptor transport, endosome to postsynaptic membrane", "id": "GO:0098887", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098887", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JYJ6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYJ6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JYJ6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYJ6" } ], "pmid": "" }, { "name": "postsynaptic density", "id": "GO:0014069", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0014069", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JYJ6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYJ6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 242, "end_pos": 244, "annotation": "n_glycosylation_sequon" }, { "start_pos": 404, "end_pos": 406, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JYJ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYJ6" }, { "id": "PS50106", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50106" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PDZ", "eco_id": "ECO_0000259", "start_pos": 48, "end_pos": 131, "start_aa": "Met", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 242, "end_pos": 244 }, { "start_pos": 404, "end_pos": 406 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JYK9-1", "uniprot_ac": "A0A9J7JYK9", "uniprot_id": "A0A9J7JYK9_CRIGR", "mass": { "chemical_mass": 49437.0, "monoisotopic_mass": 49437.0 }, "refseq": { "ac": "XP_027282328", "name": "cytokine receptor-like factor 3 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282328" }, "gene_names": [ { "name": "Crlf3", "type": "recommended", "evidence": [ { "id": "A0A9J7JYK9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYK9" } ] }, { "name": "Crlf3", "type": "synonym", "evidence": [ { "id": "XP_027282328", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027282328" } ] } ], "protein_names": [ { "name": "Cytokine receptor-like factor 3", "type": "recommended", "evidence": [ { "id": "A0A9J7JYK9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYK9/entry#names_and_taxonomy" } ] }, { "name": "Cytokine receptor-like molecule 9", "type": "synonym", "evidence": [ { "id": "A0A9J7JYK9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYK9/entry#names_and_taxonomy" } ] }, { "name": "cytokine receptor-like factor 3 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027282328", "database": 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This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. 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This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. 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"annotation": "n_glycosylation_sequon" }, { "start_pos": 579, "end_pos": 581, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JYM6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYM6" }, { "id": "PF03024", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03024" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Folate receptor-like", "eco_id": "ECO_0000259", "start_pos": 63, "end_pos": 212, "start_aa": "Leu", "end_aa": "Leu", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7JYM6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYM6" }, { "id": "PF07995", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07995" } ], "ann_type": "Domain_Extent_Annotation", 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"field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007613829", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007613829" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JYZ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYZ9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Gpr52", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYZ9", "locus": {} } ], "crossref": [ { "id": "A0A9J7JYZ9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JYZ9", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00637", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00637", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100752204", "url": "https://www.ncbi.nlm.nih.gov/gene/100752204", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050125", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050125", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752204", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752204", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JYZ9", "url": "https://www.orthodb.org/?gene=A0A9J7JYZ9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24240", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24240", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00001", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00001", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007613829", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007613829", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JYZ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYZ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JYZ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYZ9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNESRWTEWRILNMSSSIVNVSEHHSCPLGFGHYSVEDVCIFETVVIVLLTFLIIAGNLTVIFVFHCAPLLHHYTTSYFIQTMAYADLFVGVTCLVPTLSLLHYSTGVHESLTCQVFGYIISVLKSVSMACLACISVDRYLAITKPLSYNQLVTPCRLRICIIMIWIYSCLIFLPSFFGWGKPGYHGDIFEWCATSWLTSAYFTCFIVCLLYAPAALVVCFTYFHIFKICRQHTKEINDRRARFPSHEVDASRETGHSPDRRYAMVLFRITSVFYMLWLPYIIYFLLESSRVLDNPTLSFLTTWLAISNSFCNCVIYSLSNSVFRLGLRRLSETMCTSCVCVKDQEARDPKPRRRANSCSI", "length": 361, "header": "tr|A0A9J7JYZ9-1|A0A9J7JYZ9_CRIGR Isoform 1 of G-protein coupled receptor 52 OS=Cricetulus griseus OX=10029 GN=Gpr52 PE=3 SV=1 CANONICAL=A0A9J7JYZ9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JYZ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYZ9/entry", "sequence": { "sequence": "MNESRWTEWRILNMSSSIVNVSEHHSCPLGFGHYSVEDVCIFETVVIVLLTFLIIAGNLTVIFVFHCAPLLHHYTTSYFIQTMAYADLFVGVTCLVPTLSLLHYSTGVHESLTCQVFGYIISVLKSVSMACLACISVDRYLAITKPLSYNQLVTPCRLRICIIMIWIYSCLIFLPSFFGWGKPGYHGDIFEWCATSWLTSAYFTCFIVCLLYAPAALVVCFTYFHIFKICRQHTKEINDRRARFPSHEVDASRETGHSPDRRYAMVLFRITSVFYMLWLPYIIYFLLESSRVLDNPTLSFLTTWLAISNSFCNCVIYSLSNSVFRLGLRRLSETMCTSCVCVKDQEARDPKPRRRANSCSI", "length": 361, "header": "tr|A0A9J7JYZ9-1|A0A9J7JYZ9_CRIGR Isoform 1 of G-protein coupled receptor 52 OS=Cricetulus griseus OX=10029 GN=Gpr52 PE=3 SV=1 CANONICAL=A0A9J7JYZ9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JYZ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYZ9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JYZ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYZ9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100752204", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752204", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JYZ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYZ9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JYZ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYZ9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 13, "end_pos": 15, "annotation": "n_glycosylation_sequon" }, { "start_pos": 20, "end_pos": 22, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2, "end_pos": 4, "annotation": "n_glycosylation_sequon" }, { "start_pos": 58, "end_pos": 60, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JYZ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JYZ9" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 57, "end_pos": 317, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 13, "end_pos": 15 }, { "start_pos": 20, "end_pos": 22 }, { "start_pos": 2, "end_pos": 4 }, { "start_pos": 58, "end_pos": 60 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7JZ04-1", "uniprot_ac": "A0A9J7JZ04", "uniprot_id": "A0A9J7JZ04_CRIGR", "mass": { "chemical_mass": 69008.0, "monoisotopic_mass": 69008.0 }, "refseq": { "ac": "XP_027285375", "name": "kelch-like protein 7 isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285375" }, "gene_names": [ { "name": "Klhl7", "type": "recommended", "evidence": [ { "id": "A0A9J7JZ04", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZ04" } ] }, { "name": "Klhl7", "type": "synonym", "evidence": [ { "id": "XP_027285375", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285375" } ] } ], "protein_names": [ { "name": "Kelch-like protein 7 isoform X4", "type": "synonym", "evidence": [ { "id": "A0A9J7JZ04", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZ04/entry#names_and_taxonomy" } ] }, { "name": "kelch-like protein 7 isoform X4", "type": "synonym", "evidence": [ { "id": "XP_027285375", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285375" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048601.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027285375", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027285375" } ] }, { "annotation": "Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin ligase complex. The BCR(KLHL7) complex acts by mediating ubiquitination and subsequent degradation of substrate proteins. Probably mediates 'Lys-48'-linked ubiquitination.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGX4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGX4#function" }, { "database": "UniProtKB", "id": "ARBA00059954", "url": "https://www.uniprot.org/uniprotkb/ARBA00059954#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JZ04", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZ04" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Klhl7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZ04", "locus": {} } ], "crossref": [ { "id": "A0A9J7JZ04", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JZ04", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd18237", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18237", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd18447", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18447", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100763513", "url": "https://www.ncbi.nlm.nih.gov/gene/100763513", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006652", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006652", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011705", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011705", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015915", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015915", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017096", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017096", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047060", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047060", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763513", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763513", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JZ04", "url": "https://www.orthodb.org/?gene=A0A9J7JZ04", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45632", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45632", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45632:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45632:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00651", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00651", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01344", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01344", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07707", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07707", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24681", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24681", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027285375", "url": 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Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035301709", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301709" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JZ11", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZ11" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100752748", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZ11", "locus": {} } ], "crossref": [ { "id": "A0A9J7JZ11", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JZ11", "database": "AlphaFoldDB", "categories": [] }, { "id": "100752748", "url": "https://www.ncbi.nlm.nih.gov/gene/100752748", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005756", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005756", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008991", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008991", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014722", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014722", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752748", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752748", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JZ11", "url": "https://www.orthodb.org/?gene=A0A9J7JZ11", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11143", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11143", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF16906", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16906", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035301709", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301709", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JZ11", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZ11", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JZ11-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZ11-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVSVLKLHRQKKYNVRSMPIQKDDEIQVVRGHYKGIHPSKVVITRLKLDKHPKKILKRKAKCRQVGKEKGKHKEETIEKMLE", "length": 82, "header": "tr|A0A9J7JZ11-1|A0A9J7JZ11_CRIGR Isoform 1 of 60S ribosomal protein L26-like OS=Cricetulus griseus OX=10029 GN=LOC100752748 PE=3 SV=1 CANONICAL=A0A9J7JZ11-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JZ11-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZ11/entry", "sequence": { "sequence": "MVSVLKLHRQKKYNVRSMPIQKDDEIQVVRGHYKGIHPSKVVITRLKLDKHPKKILKRKAKCRQVGKEKGKHKEETIEKMLE", "length": 82, "header": "tr|A0A9J7JZ11-1|A0A9J7JZ11_CRIGR Isoform 1 of 60S ribosomal protein L26-like OS=Cricetulus griseus OX=10029 GN=LOC100752748 PE=3 SV=1 CANONICAL=A0A9J7JZ11-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042420", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042420", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769301", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769301", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JZ25", "url": "https://www.orthodb.org/?gene=A0A9J7JZ25", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24129", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24129", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24129:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24129:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00023", "url": 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Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. 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Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 49% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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"url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043409", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JZ86", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZ86" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 141, "end_pos": 143, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 141, "end_pos": 143 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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"uniprot_ac": "A0A9J7JZ95", "uniprot_id": "A0A9J7JZ95_CRIGR", "mass": { "chemical_mass": 96930.0, "monoisotopic_mass": 96930.0 }, "refseq": { "ac": "XP_007642038", "name": "Fanconi anemia group B protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007642038" }, "gene_names": [ { "name": "Fancb", "type": "recommended", "evidence": [ { "id": "A0A9J7JZ95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZ95" } ] }, { "name": "Fancb", "type": "synonym", "evidence": [ { "id": "XP_007642038", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007642038" } ] } ], "protein_names": [ { "name": "Fanconi anemia group B protein", "type": "synonym", "evidence": [ { "id": "XP_007642038", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007642038" }, { "id": "A0A9J7JZ95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZ95/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613952.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007642038", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007642038" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JZ95", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZ95" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fancb", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZ95", "locus": {} } ], "crossref": [ { "id": "100750774", "url": "https://www.ncbi.nlm.nih.gov/gene/100750774", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR033333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100750774", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750774", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LAFHRVC", "url": "https://omabrowser.org/oma/group/LAFHRVC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JZ95", "url": "https://www.orthodb.org/?gene=A0A9J7JZ95", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR28450", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28450", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28450:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28450:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF28312", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28312", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF28318", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28318", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF28327", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28327", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007642038", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007642038", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JZ95", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZ95", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JZ95-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZ95-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDGNQATPFNEQAKCLCYNGEILVFYLSKGDFEMPTDTSVLYVKRMAYDRETGTFVLISKGFLIIKEKASDLKILCCKCVSDFRTRINLPCILIQYKKYNSGAFKYYILFLHNSNKFEKYLSFKLNHALDESLKIFDGPIVLWQYLNKFFYISSQIGKVTNISVNLSSIEWVGEVENFGLIFLGLPEPPEAKCTHKLSESDYEFSNSTLCAYALTTQEILSNSYLIPLAYSNVITHVHVCAAEMVDDKLRMSLIALTRKNQLVLFQDGIPVRVCQLPFLDPCSVQILDSGKENRYFIVSFNSKACAVSEKKFKVVAKWKQVSIILTNDFLGVGTDQVLVIFEDVLNTDQLTSFAITDLIRITYSTEPLNCSQEPYPEDEHENYYLVLPALEAQLKASIVFLNKLQKHISFKDEFIVNSWKDFLNSIYGKVHSMSSNEEDCVVPFCDEDENSIHTPEENLSENFQEPKHIVEQTWCRVLDDDLVVGVKVTSLKISPNEMTLSLIMNQGNRSSFQLTKCQSQVTRLSMNSFPEAYLMPVETGPDIKRIKLTSSSKEEENSFCGQSPKAESTHVITAVTSLSPHLVFNKLCCTLLLNISDRDNGENSVHDCMVCDNLEFNLQDLFSMNHLLAFPEKESIEHMEDLLSLLAVLHKYCFHVTSPTGALNLMKVCLLKHMKCEIINGFREIYLYKKHQNYGTLFSWEPRTTFEGILTVYCRNQGVLFQCLDHIIKFLPEICFFKYLKLGNEDFIINNLSSTLEKELVTFCSLSTSAFEYVRDGFMHQCQTSKTNSCATTASEGMDKICLHKQEVQREKVIQDLNLKVNGCSYVEMTLALAETQLKSDLNVVKLTNL", "length": 850, "header": "tr|A0A9J7JZ95-1|A0A9J7JZ95_CRIGR Isoform 1 of Fanconi anemia group B protein OS=Cricetulus griseus OX=10029 GN=Fancb PE=4 SV=1 CANONICAL=A0A9J7JZ95-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JZ95-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZ95/entry", "sequence": { "sequence": "MDGNQATPFNEQAKCLCYNGEILVFYLSKGDFEMPTDTSVLYVKRMAYDRETGTFVLISKGFLIIKEKASDLKILCCKCVSDFRTRINLPCILIQYKKYNSGAFKYYILFLHNSNKFEKYLSFKLNHALDESLKIFDGPIVLWQYLNKFFYISSQIGKVTNISVNLSSIEWVGEVENFGLIFLGLPEPPEAKCTHKLSESDYEFSNSTLCAYALTTQEILSNSYLIPLAYSNVITHVHVCAAEMVDDKLRMSLIALTRKNQLVLFQDGIPVRVCQLPFLDPCSVQILDSGKENRYFIVSFNSKACAVSEKKFKVVAKWKQVSIILTNDFLGVGTDQVLVIFEDVLNTDQLTSFAITDLIRITYSTEPLNCSQEPYPEDEHENYYLVLPALEAQLKASIVFLNKLQKHISFKDEFIVNSWKDFLNSIYGKVHSMSSNEEDCVVPFCDEDENSIHTPEENLSENFQEPKHIVEQTWCRVLDDDLVVGVKVTSLKISPNEMTLSLIMNQGNRSSFQLTKCQSQVTRLSMNSFPEAYLMPVETGPDIKRIKLTSSSKEEENSFCGQSPKAESTHVITAVTSLSPHLVFNKLCCTLLLNISDRDNGENSVHDCMVCDNLEFNLQDLFSMNHLLAFPEKESIEHMEDLLSLLAVLHKYCFHVTSPTGALNLMKVCLLKHMKCEIINGFREIYLYKKHQNYGTLFSWEPRTTFEGILTVYCRNQGVLFQCLDHIIKFLPEICFFKYLKLGNEDFIINNLSSTLEKELVTFCSLSTSAFEYVRDGFMHQCQTSKTNSCATTASEGMDKICLHKQEVQREKVIQDLNLKVNGCSYVEMTLALAETQLKSDLNVVKLTNL", "length": 850, "header": "tr|A0A9J7JZ95-1|A0A9J7JZ95_CRIGR Isoform 1 of Fanconi anemia group B protein OS=Cricetulus griseus OX=10029 GN=Fancb PE=4 SV=1 CANONICAL=A0A9J7JZ95-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JZ95", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZ95" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JZ95", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZ95" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100750774", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750774", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0X9C3-1", "protein_name": "Fanconi anemia complementation group B", "gene_name": "FANCB", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MCGEIKMLLSEQQHVLAYNGELLVFQLSKAKRVEGAADRTAKLCVRRMAFDRDAQLFVQKSSGAFSVRAKHSETEIVCCDCATRSKTGVVLPCVLVKMKKHNGVVEHLLLLLHSSDRFEQCCHFRLDYELKEDVRLFAGPSVLWRHANKLFYVSSDTCTVLSAPVQLSSIAWMGEIEGEGTVVLGIRAACLPESEDGDEFSTSDRAIWGSEFFGYAIEMQKMLTGARFMPHAYSRVVSSVCVCKSERLQKQLRISAAAITQKNQLIWFQDGVPKGVCELPYEKPCLIKTAVTSSNDLLFIVSFSSGNICVVQRENLQVTSKWQKVKSVLVDDFIGSGTEQLLLLFNDDSNTDALNMFKITDFGKINYESGINYKDDVPAAEGLQENGLLTIQALETRLQAGLASVRELQQHLGLKKRVILQSCRALIDLVEGRNHILPSAKKEGLVSLWDDVGKPHSVSKEPSLTPKLQDHFIEKLWQRVVGDNLVVGVKLTESFCLSVSDISLSLVMDQDFSLISPIIECRNKIIKLNKVFSALSVSSCQIEPPQKKMKLDLRSKNDLKEEFHKRCSRTQLDKANTVTAVTSLSPLLAFHRVCCAVLLHAKKQKHQNGDLQKSKRMTLLCGKILLSLEDISNGKYSLNMLKDNSYCTGSMEDIAAILAVSIRSSFQILSSDCTLTRVNSWLLGEMECVPFKECHDMVFAHKAGNVYGTVFSWTLKSPFEGVLTLFCRSLTVLFQCLHSLIRVLPPRCDVKLMKSGSKGVLTEQLVLALEKEMFTSRSFLSSKESKAENNLTWWNEPGKKINDAPVASLLDSEDGVQQFRERLQNEKEQCMLSMNETMDGTLYQEVALKVAEAQLSSDMIVWRLSKS", "length": 867 }, "evidence": [ { "id": "A0A9J7JZ95", "url": "https://omabrowser.org/oma/group/A0A9J7JZ95/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0AAA9SC39-1", "protein_name": "FA complementation group B", "gene_name": "FANCB", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSSTEQERFCCYNGEVLIFHLSEGNFVDEGPKKTPVLHVRRMVFGRGPEGFVQKSTGFFSIKEEYSHLKIMCCDCVSDFRTGINLPYVMIQCIKEENIFKYFLLFLHGTNKFEKCLSFRLGYELKDSIRVLNGPLVLWRHGQTFFYISSQTGKVVTVPMNFSSVEWAGEIENLGMVLLGPKRCYLSAEGCTPKPSKSDYATWNTHFCAYSLERAEIISDTYIIPPAYTSMITFVHVYSTEIVNDQLRMSLIALTQKNQLISFLNGTPTSVCQLPFGDPCAVQLVDSGEEELLFIISFKSSHACAVWEKSFQVAAKWEKIRSVLIDDFFGTGTEQVLLLFKDSWNSDCRSSFEIMGHDAFNCSGETLDCNEDDLFDDKHGNCYLVVLPLERRLKVGFISIWELQQHLLLKEKIISKSYKALMNLFQRKDDSTLSAEEECLVTLCGEEENPVCTFNEKLSDNFQDLEQLVEKIWYRVIEDSLVIGVKATSSWKVSLNHVTLLLSVDQGSNSTFPLIKCQNKIFKLTRNSSPVLSSVPYEVGSEVKRIKLSVDSKEEKEESVVCEQPLKKEYVQMITAVTALPPLLTFSNFCCIVLLQMRENGNSSEAHYVQCGRIVLSVEDLSSGKCVLTFPERKPIEHMEDLFTLLAAWHRACFQITSPMFALTSVRVWLLEHMKCEVLKEFPEIWFCKRPGSFYGTLFNWKQRTPFEGILVVYSRNQTVLFQCLHDLSTVLPINSFFKYLELESEDFLIGHLAVALEKELVTLGSPPSALVKVETSLVQNCEVSKEKSSDDGAALSDIEKSIHLYRKELQREKEQMLGTNLKVSGALYREMTLKLAEVQLNSDLAAKQLTDL", "length": 852 }, "evidence": [ { "id": "A0A9J7JZ95", "url": "https://omabrowser.org/oma/group/A0A9J7JZ95/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0ABK0M142-1", "protein_name": "FA complementation group B", "gene_name": "Fancb", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": 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"glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1SQU9-1", "protein_name": "FA complementation group B", "gene_name": "FANCB", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": 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This record is derived from a genomic sequence (NW_003613704.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007631645", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007631645" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JZB5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZB5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Etfrf1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZB5", "locus": {} } ], "crossref": [ { "id": "cd20265", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20265", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100764928", "url": "https://www.ncbi.nlm.nih.gov/gene/100764928", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008011", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008011", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045296", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045296", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052000", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052000", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100764928", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764928", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JZB5", "url": "https://www.orthodb.org/?gene=A0A9J7JZB5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21024", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21024", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21024:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21024:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05347", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05347", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007631645", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007631645", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JZB5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZB5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JZB5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZB5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKMANSLRGEVLALYKNLLYLGRDYPKGADYFKRRLKNVFLKNKDVKDPEKIKELIARGEFVMKELEALYFLRKYRAMKQRYYSDTNN", "length": 88, "header": "tr|A0A9J7JZB5-1|A0A9J7JZB5_CRIGR Isoform 1 of Electron transfer flavoprotein regulatory factor 1 OS=Cricetulus griseus OX=10029 GN=Etfrf1 PE=3 SV=1 CANONICAL=A0A9J7JZB5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JZB5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZB5/entry", "sequence": { "sequence": "MKMANSLRGEVLALYKNLLYLGRDYPKGADYFKRRLKNVFLKNKDVKDPEKIKELIARGEFVMKELEALYFLRKYRAMKQRYYSDTNN", "length": 88, "header": "tr|A0A9J7JZB5-1|A0A9J7JZB5_CRIGR Isoform 1 of Electron transfer flavoprotein regulatory factor 1 OS=Cricetulus griseus OX=10029 GN=Etfrf1 PE=3 SV=1 CANONICAL=A0A9J7JZB5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003615759.1) annotated using gene prediction method: Gnomon. 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This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027286328", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286328" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JZJ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZJ7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Actn4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZJ7", "locus": {} } ], "crossref": [ { "id": "A0A9J7JZJ7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JZJ7", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00051", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00051", "database": "CDD", "categories": [ "Protein Classification" ] }, 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] }, { "name": "fibroblast growth factor 13 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027289178", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289178" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027289178.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027289178", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289178" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K341", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K341" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fgf13", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K341", "locus": {} } ], "crossref": [ { "id": "A0A9J7K341", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K341", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd23329", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23329", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100756051", "url": "https://www.ncbi.nlm.nih.gov/gene/100756051", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002209", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002209", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008996", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008996", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100756051", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756051", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A061HXY7", "url": "https://www.orthodb.org/?gene=A0A061HXY7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7K341", "url": "https://www.orthodb.org/?gene=A0A9J7K341", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11486", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11486", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00167", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00167", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027289178", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289178", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A061HXY7", "url": "https://www.uniprot.org/uniprotkb/A0A061HXY7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A061HXY7-1", "url": "https://www.uniprot.org/uniprotkb/A0A061HXY7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GL40", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GL40", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GL40-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GL40-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GLX9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GLX9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GLX9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GLX9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JZP3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZP3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JZP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZP3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K341", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K341", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K341-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K341-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKDCEWVFTKEEGNDSLKFLDDAPPGTQEYIMLRQDSIQSAELKKKESPFRAKCHEIFCCPLKQVHHKENTEPEEPQLKGIVTKLYSRQGYHLQLQADGTIDGTKDEDSTYTLFNLIPVGLRVVAIQGVQTKLYLAMNSEGYLYTSEHFTPECKFKESVFENYYVTYSSMIYRQQQSGRGWYLGLNKEGEIMKGNHVKKNKPAAHFLPKPLKVAMYKEPSLHDLTEFSRSGSGTPTKSRSVSGVLNGGKSMSHNEST", "length": 257, "header": "tr|A0A9J7K341-1|A0A9J7K341_CRIGR Isoform 1 of Fibroblast growth factor OS=Cricetulus griseus OX=10029 GN=Fgf13 PE=3 SV=1 CANONICAL=A0A9J7K341-1" }, "isoforms": [ { "isoform_ac": "A0A061HXY7-1", "url": "https://www.uniprot.org/uniprotkb/A0A061HXY7/entry", "sequence": { "sequence": "MAAAIASSLIRQKRQAREREKSNACKCVSSPSKGKTSCDKNKLNVFSRVKLFGSKKRRRRRPEPQLKGIVTKLYSRQGYHLQLQADGTIDGTKDEDSTYTLFNLIPVGLRVVAIQGVQTKLYLAMNSEGYLYTSEHFTPECKFKESVFENYYVTYSSMIYRQQQSGRGWYLGLNKEGEIMKGNHVKKNKPAAHFLPKPLKVAMYKEPSLHDLTEFSRSGSGTPTKSRSVSGVLNGGKSMSHNEST", "length": 245, "header": "tr|A0A061HXY7-1|A0A061HXY7_CRIGR Computationally mapped isoform of Fibroblast growth factor OS=Cricetulus griseus OX=10029 GN=Fgf13 PE=3 SV=1 CANONICAL=A0A9J7K341-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GL40-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GL40/entry", "sequence": { "sequence": "MSGKVTKPKEEKDASKVLDDAPPGTQEYIMLRQDSIQSAELKKKESPFRAKCHEIFCCPLKQVHHKENTEPEEPQLKGIVTKLYSRQGYHLQLQADGTIDGTKDEDSTYTLFNLIPVGLRVVAIQGVQTKLYLAMNSEGYLYTSEHFTPECKFKESVFENYYVTYSSMIYRQQQSGRGWYLGLNKEGEIMKGNHVKKNKPAAHFLPKPLKVAMYKEPSLHDLTEFSRSGSGTPTKSRSVSGVLNGGKSMSHNEST", "length": 255, "header": "tr|A0A9J7GL40-1|A0A9J7GL40_CRIGR Computationally mapped isoform of Fibroblast growth factor OS=Cricetulus griseus OX=10029 GN=Fgf13 PE=3 SV=1 CANONICAL=A0A9J7K341-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GLX9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GLX9/entry", "sequence": { "sequence": "MLRQDSIQSAELKKKESPFRAKCHEIFCCPLKQVHHKENTEPEEPQLKGIVTKLYSRQGYHLQLQADGTIDGTKDEDSTYTLFNLIPVGLRVVAIQGVQTKLYLAMNSEGYLYTSEHFTPECKFKESVFENYYVTYSSMIYRQQQSGRGWYLGLNKEGEIMKGNHVKKNKPAAHFLPKPLKVAMYKEPSLHDLTEFSRSGSGTPTKSRSVSGVLNGGKSMSHNEST", "length": 226, "header": "tr|A0A9J7GLX9-1|A0A9J7GLX9_CRIGR Computationally mapped isoform of Fibroblast growth factor OS=Cricetulus griseus OX=10029 GN=Fgf13 PE=3 SV=1 CANONICAL=A0A9J7K341-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JZP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZP3/entry", "sequence": { "sequence": "MSGKVTKPKEEKDASKEPQLKGIVTKLYSRQGYHLQLQADGTIDGTKDEDSTYTLFNLIPVGLRVVAIQGVQTKLYLAMNSEGYLYTSEHFTPECKFKESVFENYYVTYSSMIYRQQQSGRGWYLGLNKEGEIMKGNHVKKNKPAAHFLPKPLKVAMYKEPSLHDLTEFSRSGSGTPTKSRSVSGVLNGGKSMSHNEST", "length": 199, "header": "tr|A0A9J7JZP3-1|A0A9J7K341_CRIGR Computationally mapped isoform of Fibroblast growth factor OS=Cricetulus griseus OX=10029 GN=Fgf13 PE=3 SV=1 CANONICAL=A0A9J7K341-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K341-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K341/entry", "sequence": { "sequence": "MKDCEWVFTKEEGNDSLKFLDDAPPGTQEYIMLRQDSIQSAELKKKESPFRAKCHEIFCCPLKQVHHKENTEPEEPQLKGIVTKLYSRQGYHLQLQADGTIDGTKDEDSTYTLFNLIPVGLRVVAIQGVQTKLYLAMNSEGYLYTSEHFTPECKFKESVFENYYVTYSSMIYRQQQSGRGWYLGLNKEGEIMKGNHVKKNKPAAHFLPKPLKVAMYKEPSLHDLTEFSRSGSGTPTKSRSVSGVLNGGKSMSHNEST", "length": 257, "header": "tr|A0A9J7K341-1|A0A9J7K341_CRIGR Isoform 1 of Fibroblast growth factor OS=Cricetulus griseus OX=10029 GN=Fgf13 PE=3 SV=1 CANONICAL=A0A9J7K341-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JZP3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZP3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JZP3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZP3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100756051", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756051", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "growth factor activity", "id": "GO:0008083", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008083", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K341", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K341" } ], "pmid": "" }, { "name": "microtubule binding", "id": "GO:0008017", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008017", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K341", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K341" } ], "pmid": "" }, { "name": "sodium channel regulator activity", "id": "GO:0017080", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017080", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K341", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K341" } ], "pmid": "" }, { "name": "transmembrane transporter binding", "id": "GO:0044325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044325", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K341", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K341" } ], "pmid": "" }, { "name": "beta-tubulin binding", "id": "GO:0048487", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048487", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K341", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K341" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 10, "go_terms": [ { "name": "microtubule polymerization", "id": "GO:0046785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046785", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K341", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K341" } ], "pmid": "" }, { "name": "learning", "id": "GO:0007612", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007612", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K341", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K341" } ], "pmid": "" }, { "name": "memory", "id": "GO:0007613", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007613", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K341", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K341" } ], "pmid": "" }, { "name": "protein localization to plasma membrane", "id": "GO:0072659", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072659", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K341", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K341" } ], "pmid": "" }, { "name": "hippocampus development", "id": "GO:0021766", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0021766", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K341", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K341" } ], "pmid": "" }, { "name": "cerebral cortex cell migration", "id": "GO:0021795", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0021795", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K341", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K341" } ], "pmid": "" }, { "name": "negative regulation of microtubule depolymerization", "id": "GO:0007026", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007026", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K341", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K341" } ], "pmid": "" }, { "name": "regulation of cardiac muscle cell action potential involved in regulation of contraction", "id": "GO:0098909", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098909", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K341", "url": 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"header": "tr|A0A9J7K012-1|A0A9J7K012_CRIGR Isoform 1 of LOW QUALITY PROTEIN: NUT family member 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100754055 PE=3 SV=1 CANONICAL=A0A9J7K012-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K012-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K012/entry", "sequence": { "sequence": "MAPVSTRRQPDDLLLKKDGHSSTKVFELVFHRLSSQLTGNIELVSINNCNPTFRDLAMSCPVLRSLAQRKPTMKVEECLWRGLQEWQYTSNYDRMIFFEMAEKFTEFESSEEKENSRLEMMRSIKCQVLATAKQDAPRPPAPEVFEEPACNSMKIGSKTDPARLPVFRHRQLQKTEAPMEILPEAMQEYIDIMDWLERLPXSYTGEPTEKEEEKNSEPEQEEDDFYSDAGVLCYIDELCSQKHFVDQVEDIINPQFVAEILSSKPEMDILSLMKELEYEEEFTWDESYMQLVEEHCLALKKKGCKRAPLNPGDPQILSNASVPTVCQGAKRESHSTQRGTSEQKSSSPVTSLDHQCPGATNAEIWVPRPNVFPSSQCLLSLGDTGSTVIPYGRGAHPQIPGSRCAMSLRGVCAMEEFQEALGRTIEDKXELPSLSFLLCSHYMLVRWKLSGYLCPYTGLSDSDSIPKTLSPKMRDLSPDTSSNDKSEQPAIIGGLNPMAKRSNSGLGHGIFEGSLSALGLAHSSQAQKKFESLSTRKRKWKKWHCATCGISPQSRQSLTLSPPCTLIPKMKKKTH", "length": 575, "header": "tr|A0A9J7K012-1|A0A9J7K012_CRIGR Isoform 1 of LOW QUALITY PROTEIN: NUT family member 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100754055 PE=3 SV=1 CANONICAL=A0A9J7K012-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [], "pathway": [ { "id": "cge:100754055", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754055", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 319, "end_pos": 321, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7K012", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K012" }, { "id": "PF12881", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12881" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Nuclear Testis protein N-terminal", "eco_id": "ECO_0000259", "start_pos": 57, "end_pos": 539, "start_aa": "Ala", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 319, "end_pos": 321 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": 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} ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7K014-1", "uniprot_ac": "A0A9J7K014", "uniprot_id": "A0A9J7K014_CRIGR", "mass": { "chemical_mass": 132918.0, "monoisotopic_mass": 132918.0 }, "refseq": { "ac": "XP_027284512", "name": "uncharacterized protein KIAA1257 homolog", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027284512" }, "gene_names": [ { "name": "Cfap92", "type": "recommended", "evidence": [ { "id": "A0A9J7K014", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K014" } ] }, { "name": "Cfap92", "type": "synonym", "evidence": [ { "id": "XP_027284512", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027284512" } ] } ], "protein_names": [ { "name": "Uncharacterized protein KIAA1257 homolog", "type": "synonym", "evidence": [ { "id": "A0A9J7K014", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K014/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein KIAA1257 homolog", "type": "synonym", "evidence": [ { "id": "XP_027284512", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027284512" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048601.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027284512", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027284512" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K014", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K014" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cfap92", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K014", "locus": {} } ], "crossref": [ { "id": "A0A9J7K014", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K014", "database": "AlphaFoldDB", "categories": [] }, { "id": "100767956", "url": "https://www.ncbi.nlm.nih.gov/gene/100767956", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027876", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027876", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100767956", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767956", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K014", "url": "https://www.orthodb.org/?gene=A0A9J7K014", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR33667", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33667", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33667:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33667:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15084", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15084", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF28302", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28302", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF28322", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28322", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027284512", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027284512", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K014", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K014", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K014-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K014-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSLKAWEWEEDGRASMEPASSMASAYQSASEYETDEYPKSRTPAQEWDSEDQFSSLESSEGPPCSFNTDVPQVVPCRFVISLAFPVQSGQKGKASNLSDKKKTPKPDNRAAKTRQFYHIEYFFLPDDVEPKKVDVVLFPGVAKVFLESGIKTVKPWREDDKIWVSWSQTFNVNMTKELLKKINFHKITLKLWDTRDKVSKKVRYHRLKTATFLEDPESFEEVKFLVLSQKRLSTVANEKPNIFPEELKEENIPGDQEKHIKSSQEAEIAKNGEECEKSIKMEDPSVPRRTPTKTPISLTGTTMMEIKEIIEKASLSSLTNLLEKQKSQIKGKDSETKKKAPKKMKKYQTEEEAEPKLAAASWKPSVFSIQLSIMPLLAGWQTVISRGSEKSANILDCFLTLKTEVPIMTEEQKQDLNPLTIKVRCASCLPVYPVSIRELERLCAPVYCRYQFHTTPVHETKGEPHGTHVFFQDINVIFLGAMHPSDLREYLEGPPMVVEVHDRDRKSEQYSRKPTLFGEDFVDSYFNLQAFISPKDTENNPFESQNKMWDPYGIARVSFAELLLGHKYLNLVVPIHNCEPKFASQSQDSRKRSVGYRTPAEVLQHNSMPIGNYLEANSLLKLRVDIAVPLSSWFTAPELDLMGTQFGRIIFVFNTKKLALLQDLLKDITKINAKALGLDNYPIQKMQQILSAFRVRVKIQEQQNLDVLTGFHLLDGRIHLFILEGLAEHGLRQLWESYQSRVTTSNRVACKVLYDSRLLFRHRLYADLETILYHVHLFRPVSLLLRYPVLYIRGAVSRMAFKALARIHDICHNSTRLKEVIMRDLLPSSSMIKDLNQEFGMPISQEELINGKMLTVSPQSPPNEENIQRQTSTLPEEIQIHQEKYLQWRNNMLRNQVHKCSLVQKNITEAYQLTKKPLKSMVKAIRIAIPENKAVHNYSIQSLNSTELAKKEMFKEMAKEPWKRFTYSQKYLSAMVDPNDPEEEAKKAQKKSRQAWLTASGFQTWGLQSSIGCYQQDFGLPPVKELNEEWQENSLFTGLLKPVLDRDRWSWSQRHLDFDLYKKPPLYLQVPSLPPPKPAIGRKQKASIQSSEWRRQSRVTTKSPSSCDSLSVHLQDIISLNDHHLALGTQSHITSTPHESSVGPHHPSSSFPSRWLH", 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"length": 1157, "header": "tr|A0A9J7K014-1|A0A9J7K014_CRIGR Isoform 1 of Uncharacterized protein KIAA1257 homolog OS=Cricetulus griseus OX=10029 GN=Cfap92 PE=4 SV=1 CANONICAL=A0A9J7K014-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K014", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K014" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K014", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K014" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100767956", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767956", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 173, "end_pos": 175, "annotation": "n_glycosylation_sequon" }, { "start_pos": 813, "end_pos": 815, "annotation": "n_glycosylation_sequon" }, { "start_pos": 906, "end_pos": 908, "annotation": "n_glycosylation_sequon" }, { "start_pos": 937, "end_pos": 939, "annotation": "n_glycosylation_sequon" }, { "start_pos": 944, "end_pos": 946, "annotation": "n_glycosylation_sequon" }, { "start_pos": 96, "end_pos": 98, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7K014", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K014" }, { "id": "PF15084", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15084" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DUF4550", "eco_id": "ECO_0000259", "start_pos": 115, "end_pos": 208, "start_aa": "Gln", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 173, "end_pos": 175 }, { "start_pos": 813, "end_pos": 815 }, { "start_pos": 906, 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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. 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Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 37% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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This record is derived from a genomic sequence (NC_048601.1) annotated using gene prediction method: Gnomon. 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{ "id": "cge:100750403", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750403", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K0Z5", "url": "https://www.orthodb.org/?gene=A0A9J7K0Z5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23039", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23039", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23039:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23039:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15273", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15273", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027288547", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288547", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K0Z5", "url": 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"length": 1647, "header": "tr|A0A9J7K0Z5-1|A0A9J7K0Z5_CRIGR Isoform 1 of Nance-Horan syndrome protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Nhs PE=4 SV=1 CANONICAL=A0A9J7K0Z5-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 343, "start_aa": "Thr", "end_pos": 343, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr343", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 846, "start_aa": "Thr", "end_pos": 846, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr846", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K0Z5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0Z5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K0Z5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0Z5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100750403", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750403", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K0Z5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0Z5" } ], "pmid": "" }, { "name": "lens development in camera-type eye", "id": "GO:0002088", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002088", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K0Z5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0Z5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1153, "end_pos": 1155, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1486, "end_pos": 1488, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1507, "end_pos": 1509, "annotation": "n_glycosylation_sequon" }, { "start_pos": 282, "end_pos": 284, "annotation": "n_glycosylation_sequon" }, { "start_pos": 334, "end_pos": 336, "annotation": "n_glycosylation_sequon" }, { "start_pos": 363, "end_pos": 365, "annotation": "n_glycosylation_sequon" }, { "start_pos": 478, "end_pos": 480, "annotation": "n_glycosylation_sequon" }, { "start_pos": 629, "end_pos": 631, "annotation": "n_glycosylation_sequon" }, { "start_pos": 710, "end_pos": 712, "annotation": "n_glycosylation_sequon" }, { "start_pos": 713, "end_pos": 715, "annotation": "n_glycosylation_sequon" }, { "start_pos": 793, "end_pos": 795, "annotation": 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"XP_027288615", "name": "motile sperm domain-containing protein 2 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288615" }, "gene_names": [ { "name": "Mospd2", "type": "recommended", "evidence": [ { "id": "A0A9J7K2I2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2I2" } ] }, { "name": "Mospd2", "type": "synonym", "evidence": [ { "id": "XP_027288615", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288615" } ] } ], "protein_names": [ { "name": "Motile sperm domain-containing protein 2 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7K2I2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2I2/entry#names_and_taxonomy" } ] }, { "name": "motile sperm domain-containing protein 2 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027288615", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288615" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027288615", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288615" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K2I2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2I2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Mospd2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2I2", "locus": {} } ], "crossref": [ { "id": "A0A9J7K2I2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K2I2", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00170", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00170", "database": "CDD", "categories": [ "Protein Classification" ] 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"Protein Classification" ] }, { "id": "IPR053012", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053012", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100750487", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750487", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K2I2", "url": "https://www.orthodb.org/?gene=A0A9J7K2I2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46384", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46384", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46384:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46384:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00635", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00635", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00650", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00650", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027288615", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288615", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GKP6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKP6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GKP6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKP6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K111", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K111", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K111-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K111-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K2I2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2I2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K2I2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2I2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAENNAQNKAKLISETRRRFEAEYVTEKSEKYDPRDVERLQQDDNWVESYLIWRHNVVDETLKMLDESFQWRKEFAVNDLSESSIPRWLLELGGIYLHGYDKEGNKLFWIRVKYHIKDQKTIMDKKKLIAFWLERYAKRENGKPITVMFDMSETGLNSIDMDFVRFIINCFKVYYPKYLSKIVIFDMPWIMNAAFKIVKSWLGPEAVSLLKFTSKNEIQEYVSVEYLPPHMGGTDPFKYSYPPLVDDDFQTPLCENGPIASEDETSSKEDIEGDGKESLETISNEEQPVLSEKTNPTESASKTDETEKVDSKMKTFKKPLSVFKGPLLHISPAEELYFGSMESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASVDIIVSPHGGLKVSAQDRFLIMAAEMEQPSGTGPTELTQFWKEVPRSKVMEHRLRCHTVESSKPNTLMLKDSAANMSDKTSEDLYLQLNRLLESNRKLEDQLQRSIWFQQLLLALTMVLLAFVVSFFYSLYS", "length": 518, "header": "tr|A0A9J7K2I2-1|A0A9J7K2I2_CRIGR Isoform 1 of Motile sperm domain-containing protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Mospd2 PE=4 SV=1 CANONICAL=A0A9J7K2I2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GKP6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKP6/entry", "sequence": { "sequence": "MAENNAQNKAKLISETRRRFEAEYVTEKSEKYDPRDVERLQQDDNWVESYLIWRHNVVDETLKMLDESFQWRKEFAVNDLSESSIPRWLLELGGIYLHGYDKEGNKLFWIRVKYHIKDQKTIMDKKKLIAFWLERYAKRENGKPITVMFDMSETGLNSIDMDFVRFIINCFKVYYPKYLSKIVIFDMPWIMNAAFKIVKSWLGPEAVSLLKFTSKNEIQEYVSVEYLPPHMGGTDPFKYSYPPLVDDDFQTPLCENGPIASEDETSSKEDIEGDGKESLETISNEEQPVLSEKTNPTESASKTDETEKVDSKMKTFKKPLSVFKGPLLHISPAEELYFGSMESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASVDIIVSPHGGLKVSAQDRFLIMAAEMEQPSGTGPTELTQFWKEVPRSKVMEHRLRCHTVESSKPNTLMLKDSAANMSDKTSEDLYLQFATSRCETDCSPH", "length": 486, "header": "tr|A0A9J7GKP6-1|A0A9J7GKP6_CRIGR Computationally mapped isoform of Motile sperm domain-containing protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Mospd2 PE=4 SV=1 CANONICAL=A0A9J7K2I2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K111-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K111/entry", "sequence": { "sequence": "MAENNAQNKAKLISETRRRFEAEYVTEKSEKYDPRDVERLQQDDNWVESYLIWRHNVVDETLKMLDESFQWRKEFAVNDLSESSIPRWLLELGGIYLHGYDKEGNKLFWIRVKYHIKDQKTIMDKKKLIAFWLERYAKRENGKPITVMFDMSETGLNSIDMDFVRFIINCFKVYYPKYLSAFKIVKSWLGPEAVSLLKFTSKNEIQEYVSVEYLPPHMGGTDPFKYSYPPLVDDDFQTPLCENGPIASEDETSSKEDIEGDGKESLETISNEEQPVLSEKTNPTESASKTDETEKVDSKMKTFKKPLSVFKGPLLHISPAEELYFGSMESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASVDIIVSPHGGLKVSAQDRFLIMAAEMEQPSGTGPTELTQFWKEVPRSKVMEHRLRCHTVESSKPNTLMLKDSAANMSDKTSEDLYLQLNRLLESNRKLEDQLQRSIWFQQLLLALTMVLLAFVVSFFYSLYS", "length": 505, "header": "tr|A0A9J7K111-1|A0A9J7K2I2_CRIGR Computationally mapped isoform of Motile sperm domain-containing protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Mospd2 PE=4 SV=1 CANONICAL=A0A9J7K2I2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K2I2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2I2/entry", "sequence": { "sequence": "MAENNAQNKAKLISETRRRFEAEYVTEKSEKYDPRDVERLQQDDNWVESYLIWRHNVVDETLKMLDESFQWRKEFAVNDLSESSIPRWLLELGGIYLHGYDKEGNKLFWIRVKYHIKDQKTIMDKKKLIAFWLERYAKRENGKPITVMFDMSETGLNSIDMDFVRFIINCFKVYYPKYLSKIVIFDMPWIMNAAFKIVKSWLGPEAVSLLKFTSKNEIQEYVSVEYLPPHMGGTDPFKYSYPPLVDDDFQTPLCENGPIASEDETSSKEDIEGDGKESLETISNEEQPVLSEKTNPTESASKTDETEKVDSKMKTFKKPLSVFKGPLLHISPAEELYFGSMESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASVDIIVSPHGGLKVSAQDRFLIMAAEMEQPSGTGPTELTQFWKEVPRSKVMEHRLRCHTVESSKPNTLMLKDSAANMSDKTSEDLYLQLNRLLESNRKLEDQLQRSIWFQQLLLALTMVLLAFVVSFFYSLYS", "length": 518, "header": "tr|A0A9J7K2I2-1|A0A9J7K2I2_CRIGR Isoform 1 of Motile sperm domain-containing protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Mospd2 PE=4 SV=1 CANONICAL=A0A9J7K2I2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K111", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K111" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K111", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K111" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100750487", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750487", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "endomembrane system", "id": "GO:0012505", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0012505", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K2I2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2I2" } ], "pmid": "" }, { "name": "endoplasmic reticulum-endosome membrane contact site", "id": "GO:0140284", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140284", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K2I2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2I2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 354, "end_pos": 356, "annotation": "n_glycosylation_sequon" }, { "start_pos": 378, "end_pos": 380, "annotation": "n_glycosylation_sequon" }, { "start_pos": 461, "end_pos": 463, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7K2I2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2I2" }, { "id": "PS50191", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50191" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CRAL-TRIO", "eco_id": "ECO_0000259", "start_pos": 85, "end_pos": 239, "start_aa": "Ile", "end_aa": "Tyr", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7K2I2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2I2" }, { "id": "PS50202", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50202" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MSP", "eco_id": "ECO_0000259", "start_pos": 327, "end_pos": 445, "start_aa": "Leu", "end_aa": "Val", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 354, "end_pos": 356 }, { "start_pos": 378, "end_pos": 380 }, { "start_pos": 461, "end_pos": 463 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7K158-1", "uniprot_ac": "A0A9J7K158", "uniprot_id": "A0A9J7K158_CRIGR", "mass": { "chemical_mass": 75956.0, "monoisotopic_mass": 75956.0 }, "refseq": { "ac": "XP_027288777", "name": "zinc finger matrin-type protein 1 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288777" }, "gene_names": [ { "name": "Zmat1", "type": "recommended", "evidence": [ { "id": "A0A9J7K158", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K158" } ] }, { "name": "Zmat1", "type": "synonym", "evidence": [ { "id": "XP_027288777", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288777" } ] } ], "protein_names": [ { "name": "Zinc finger matrin-type protein 1 isoform X3", "type": "synonym", "evidence": [ { "id": "A0A9J7K158", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K158/entry#names_and_taxonomy" } ] }, { "name": "zinc finger matrin-type protein 1 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_027288777", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288777" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027288777.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027288777", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288777" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K158", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K158" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Zmat1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K158", "locus": {} } ], "crossref": [ { "id": "A0A9J7K158", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K158", "database": "AlphaFoldDB", "categories": [] }, { "id": "100754864", "url": "https://www.ncbi.nlm.nih.gov/gene/100754864", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003604", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003604", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100754864", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754864", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K158", "url": "https://www.orthodb.org/?gene=A0A9J7K158", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46742", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46742", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46742:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46742:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_027288777", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288777", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H5Q8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5Q8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H5Q8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5Q8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K158", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K158", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K158-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K158-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAAGRGDSSFKVDTCPCLREDATCDGQERSAYFTDDFCQACGVVLHLESERISHYESEIHAQNVKFYFQVHGEQNEVPGTKVNMHVENSQVYKSGEVNRNKFSGFCNMSFDSSAVAQSHYVGQSHPQNQKQLLEEHDRESPSGCQPKMDKPNTTSAAPTFLKSVIVKPPPAYRMRTYVCHICSITFTSLHMFRSHMQGSEHQIKESHVISQAKNSKKMQESYQGECADYSKVKKSRELESRAHFRKMEDNYLEVRGYRDMVDSRPRHKMLEQKHPLENFWSHPGPYNNCRAVEDQLPHCVPAQSKTYDSFQDELEDYIKGQKARGLDPNISFRRITENYRYRDQRYRERFDPGYRQRMCEEKFSSECPQTYQRQYNGSPVEGQLPHWLPPHSKRRNDDFQAEFDDYNKVQESRELKPKTSFRRIDSAIETHNYREMDDRRSKHRMFEQRFPCETFQTYTDPHNSSHVVENKLPHYLPAYESQQSLDSNSYYQFTRDCFSEKPVPLSLSQEENNPGSHSVEFDIYKQLPSYDSASAHETSHKRRHQKRRRHLEEGKERPEKEQSKHKRKRSCQDKDLDQDKSTEQTKGEEDKAGVSSEKIKHRKKKRKHEAASEKEERKHKKEKKKSVEERTEEEILWDESILGF", "length": 645, "header": "tr|A0A9J7K158-1|A0A9J7K158_CRIGR Isoform 1 of Zinc finger matrin-type protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Zmat1 PE=4 SV=1 CANONICAL=A0A9J7K158-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H5Q8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5Q8/entry", "sequence": { "sequence": "MAAAGRGDSSFKVDTCPCLREDATCDGQERSAYFTDDFCQACGVVLHLESERISHYESEIHAQNVKFYFQVHGEQNEVPGTKVNMHVENSQSGEVNRNKFSGFCNMSFDSSAVAQSHYVGQSHPQNQKQLLEEHDRESPSGCQPKMDKPNTTSAAPTFLKSVIVKPPPAYRMRTYVCHICSITFTSLHMFRSHMQGSEHQIKESHVISQAKNSKKMQESYQGECADYSKVKKSRELESRAHFRKMEDNYLEVRGYRDMVDSRPRHKMLEQKHPLENFWSHPGPYNNCRAVEDQLPHCVPAQSKTYDSFQDELEDYIKGQKARGLDPNISFRRITENYRYRDQRYRERFDPGYRQRMCEEKFSSECPQTYQRQYNGSPVEGQLPHWLPPHSKRRNDDFQAEFDDYNKVQESRELKPKTSFRRIDSAIETHNYREMDDRRSKHRMFEQRFPCETFQTYTDPHNSSHVVENKLPHYLPAYESQQSLDSNSYYQFTRDCFSEKPVPLSLSQEENNPGSHSVEFDIYKQLPSYDSASAHETSHKRRHQKRRRHLEEGKERPEKEQSKHKRKRSCQDKDLDQDKSTEQTKGEEDKAGVSSEKIKHRKKKRKHEAASEKEERKHKKEKKKSVEERTEEEILWDESILGF", "length": 642, "header": "tr|A0A9J7H5Q8-1|A0A9J7H5Q8_CRIGR Computationally mapped isoform of Zinc finger matrin-type protein 1 isoform X4 OS=Cricetulus griseus OX=10029 GN=Zmat1 PE=4 SV=1 CANONICAL=A0A9J7K158-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K158-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K158/entry", "sequence": { "sequence": "MAAAGRGDSSFKVDTCPCLREDATCDGQERSAYFTDDFCQACGVVLHLESERISHYESEIHAQNVKFYFQVHGEQNEVPGTKVNMHVENSQVYKSGEVNRNKFSGFCNMSFDSSAVAQSHYVGQSHPQNQKQLLEEHDRESPSGCQPKMDKPNTTSAAPTFLKSVIVKPPPAYRMRTYVCHICSITFTSLHMFRSHMQGSEHQIKESHVISQAKNSKKMQESYQGECADYSKVKKSRELESRAHFRKMEDNYLEVRGYRDMVDSRPRHKMLEQKHPLENFWSHPGPYNNCRAVEDQLPHCVPAQSKTYDSFQDELEDYIKGQKARGLDPNISFRRITENYRYRDQRYRERFDPGYRQRMCEEKFSSECPQTYQRQYNGSPVEGQLPHWLPPHSKRRNDDFQAEFDDYNKVQESRELKPKTSFRRIDSAIETHNYREMDDRRSKHRMFEQRFPCETFQTYTDPHNSSHVVENKLPHYLPAYESQQSLDSNSYYQFTRDCFSEKPVPLSLSQEENNPGSHSVEFDIYKQLPSYDSASAHETSHKRRHQKRRRHLEEGKERPEKEQSKHKRKRSCQDKDLDQDKSTEQTKGEEDKAGVSSEKIKHRKKKRKHEAASEKEERKHKKEKKKSVEERTEEEILWDESILGF", "length": 645, "header": "tr|A0A9J7K158-1|A0A9J7K158_CRIGR Isoform 1 of Zinc finger matrin-type protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Zmat1 PE=4 SV=1 CANONICAL=A0A9J7K158-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K158", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K158" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K158", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K158" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754864", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754864", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K158", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K158" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K158", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K158" } ], "pmid": "" }, { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K158", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K158" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 108, "end_pos": 110, "annotation": "n_glycosylation_sequon" }, { "start_pos": 153, "end_pos": 155, "annotation": "n_glycosylation_sequon" }, { "start_pos": 330, "end_pos": 332, "annotation": "n_glycosylation_sequon" }, { "start_pos": 377, "end_pos": 379, "annotation": "n_glycosylation_sequon" }, { "start_pos": 464, "end_pos": 466, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7K158", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K158" }, { "id": "PS00028", "database": "PROSITE", "url": "https://prosite.expasy.org/PS00028" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 180, "end_pos": 202, "start_aa": "Cys", "end_aa": "His", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 108, "end_pos": 110 }, { "start_pos": 153, "end_pos": 155 }, { "start_pos": 330, "end_pos": 332 }, { "start_pos": 377, "end_pos": 379 }, { "start_pos": 464, "end_pos": 466 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7K163-1", "uniprot_ac": "A0A9J7K163", "uniprot_id": "A0A9J7K163_CRIGR", "mass": { "chemical_mass": 61579.0, "monoisotopic_mass": 61579.0 }, "refseq": { "ac": "XP_027288793", "name": "uncharacterized protein LOC113837702", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288793" }, "gene_names": [ { "name": "LOC113837702", "type": "recommended", "evidence": [ { "id": "A0A9J7K163", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K163" } ] }, { "name": "LOC113837702", "type": "synonym", "evidence": [ { "id": "XP_027288793", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288793" } ] } ], "protein_names": [ { "name": "Uncharacterized protein LOC113837702", "type": "synonym", "evidence": [ { "id": "A0A9J7K163", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K163/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein LOC113837702", "type": "synonym", "evidence": [ { "id": "XP_027288793", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288793" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 33% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027288793", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288793" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K163", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K163" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113837702", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K163", "locus": {} } ], "crossref": [ { "id": "A0A9J7K163", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K163", "database": "AlphaFoldDB", "categories": [] }, { "id": "113837702", "url": "https://www.ncbi.nlm.nih.gov/gene/113837702", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000840", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000840", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001584", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001584", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002079", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002079", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003036", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003036", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008919", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008919", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010999", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010999", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012337", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012337", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036946", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036946", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050462", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050462", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113837702", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113837702", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K163", "url": "https://www.orthodb.org/?gene=A0A9J7K163", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR33166", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33166", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00665", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00665", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01140", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01140", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01141", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01141", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02093", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02093", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027288793", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288793", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K163", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K163", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K163-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K163-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGQTVTTPLSLTLSHWRDVQEYAHNQSVDVRKRKWITLCSSEWPTFDVGWPRDGTFNPQTIFQVKEKIMDPGPHGHPDQVAYIITWEALVQDPPPWVRPFLHPKGPSLLPPSNRSDRPIPSAPTPPTPLIPPNPPSLSNLYPTAVKDTKAKEKKTPKVLPPGEDLLVDLLTEEPPPYPPLPPPPEAEADSAALAEAAPDPSPMAYRLRGRREQPVPDSTTLPLRTGLNGQPQYWPFSASDLYNWKNNNPSFSADPVRLTSLIESVLTTHQPTWDDCQQLLQVLLTSEEKQRVLLEARKNVPGANGQPTQLPNEIDAACPLERPEWDFTTEADTFSGWVEAFPTKHETAKIVTKKLLEEIFPHYGMPQVLGTDNGPAFVSQVSQSVATLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLSLATGTRDWVLLLPLALYRARNTPGPHGLTPFEILHGVPTPIINFLDQDVSDFANSPSLQAHLQALQLVQREVWKPLAQAYKDQRDHPTIPHSYQIGDTVWVRRHQPRTLNPAGRDPTSFCLPLPPHSR", "length": 550, "header": "tr|A0A9J7K163-1|A0A9J7K163_CRIGR Isoform 1 of Uncharacterized protein LOC113837702 OS=Cricetulus griseus OX=10029 GN=LOC113837702 PE=4 SV=1 CANONICAL=A0A9J7K163-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K163-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K163/entry", "sequence": { "sequence": "MGQTVTTPLSLTLSHWRDVQEYAHNQSVDVRKRKWITLCSSEWPTFDVGWPRDGTFNPQTIFQVKEKIMDPGPHGHPDQVAYIITWEALVQDPPPWVRPFLHPKGPSLLPPSNRSDRPIPSAPTPPTPLIPPNPPSLSNLYPTAVKDTKAKEKKTPKVLPPGEDLLVDLLTEEPPPYPPLPPPPEAEADSAALAEAAPDPSPMAYRLRGRREQPVPDSTTLPLRTGLNGQPQYWPFSASDLYNWKNNNPSFSADPVRLTSLIESVLTTHQPTWDDCQQLLQVLLTSEEKQRVLLEARKNVPGANGQPTQLPNEIDAACPLERPEWDFTTEADTFSGWVEAFPTKHETAKIVTKKLLEEIFPHYGMPQVLGTDNGPAFVSQVSQSVATLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLSLATGTRDWVLLLPLALYRARNTPGPHGLTPFEILHGVPTPIINFLDQDVSDFANSPSLQAHLQALQLVQREVWKPLAQAYKDQRDHPTIPHSYQIGDTVWVRRHQPRTLNPAGRDPTSFCLPLPPHSR", "length": 550, "header": "tr|A0A9J7K163-1|A0A9J7K163_CRIGR Isoform 1 of Uncharacterized protein LOC113837702 OS=Cricetulus griseus OX=10029 GN=LOC113837702 PE=4 SV=1 CANONICAL=A0A9J7K163-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { 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"monoisotopic_mass": 48238.0 }, "refseq": { "ac": "XP_027289560", "name": "zinc finger protein 431-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289560" }, "gene_names": [ { "name": "LOC113837946", "type": "recommended", "evidence": [ { "id": "A0A9J7K1N8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1N8" } ] }, { "name": "LOC113837946", "type": "synonym", "evidence": [ { "id": "XP_027289560", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289560" } ] } ], "protein_names": [ { "name": "Zinc finger protein 431-like", "type": "synonym", "evidence": [ { "id": "A0A9J7K1N8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1N8/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 431-like", "type": "synonym", "evidence": [ { "id": "XP_027289560", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289560" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276808.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027289560.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027289560", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289560" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K1N8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1N8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113837946", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1N8", "locus": {} } ], "crossref": [ { "id": "A0A9J7K1N8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K1N8", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "113837946", "url": 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}, { "id": "PTHR24394", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24394", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24394:SF48", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24394:SF48", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13465", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13465", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027289560", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289560", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K1N8", "url": 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Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 26% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. 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This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. 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OS=Cricetulus griseus OX=10029 GN=LOC100755119 PE=3 SV=1 CANONICAL=A0A9J7K1R8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7K1T0-1", "uniprot_ac": "A0A9J7K1T0", "uniprot_id": "A0A9J7K1T0_CRIGR", "mass": { "chemical_mass": 49474.0, "monoisotopic_mass": 49474.0 }, "refseq": { "ac": "XP_027289803", "name": "LOW QUALITY PROTEIN: bystin isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289803" }, "gene_names": [ { "name": "Bystin", "type": "recommended", "evidence": [ { "id": "A0A9J7K1T0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1T0" } ] }, { "name": "Bystin", "type": "synonym", "evidence": [ { "id": "XP_027289803", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289803" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: bystin isoform X3", "type": "synonym", "evidence": [ { "id": "XP_027289803", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289803" }, { "id": "A0A9J7K1T0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1T0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 2 indels ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276875.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027289803", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289803" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K1T0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1T0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Bystin", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1T0", "locus": {} } ], "crossref": [ { "id": "100769168", "url": "https://www.ncbi.nlm.nih.gov/gene/100769168", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007955", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007955", "database": "InterPro", "categories": [ "Protein Classification" ] 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027287347", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027287347" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K1V1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1V1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113837435", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1V1", "locus": {} } ], "crossref": [ { "id": "A0A9J7K1V1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K1V1", "database": "AlphaFoldDB", "categories": [] }, { "id": "113837435", "url": "https://www.ncbi.nlm.nih.gov/gene/113837435", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": 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"tr|A0A9J7K1V1-1|A0A9J7K1V1_CRIGR Isoform 1 of Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit delta-like isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC113837435 PE=4 SV=1 CANONICAL=A0A9J7K1V1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GL44-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GL44/entry", "sequence": { "sequence": "MPPGKPLQPVLRMKVDELFLRWLSDPGTQDALRDGLRRLQEAGDVGDVITRGGDAIGSDVNHGDITGRRIVSRSDITSESDVTFRNDVTRADVISGDPGPHPAPPLGIARPARAPRRTAEWIRVRTQEEPSPPPPPEAPPPGGPPPGPSIPAFFFPHGRPGAGPDVDYVIARVERVFAGFERQRVGLKDMGVVAKACGCPLYWKAPLFYAAGGARTGSLSVHKFLALWRKVLVTCHDDAARFVRLLSGPGGRGLAQEDFQPLLQDVVNTHPGLAFLKEAPEFHSRYISTVIQRIFYTVNRSWSGRITCSELRRSRFLQEVERLEAEPDVSRLPAFFSYAHFYVIYVRFWELDGDHDLVIDRDDLGRHGDRAISSRVIDRIFSGAVTRGGSEHAHRKLTYEDFVWFLISEEDKTTPTRAGAAPGGPGRGAAALPGPGVSDAGHGQPARARADLAPRPPSLRPGRHFLRCLHQC", "length": 472, "header": "tr|A0A9J7GL44-1|A0A9J7GL44_CRIGR Computationally mapped isoform of Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC113837435 PE=4 SV=1 CANONICAL=A0A9J7K1V1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K1V1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1V1/entry", "sequence": { "sequence": "MPPGKPLQPVLRMKVDELFLRWLSDPGTQDALRDGLRRLQEAGDVGDVITRGGDAIGSDVNHGDITGRRIVSRSDITSESDVTFRNDVTRADVISGDPGPHPAPPLGIARPARAPRRTAEWIRVRTQEEPSPPPPPEAPPPGGPPPGPSIPAFFFPHGRPGAGPDVDYVIARVERVFAGFERQRVGLKDMGVVAKACGCPLYWKAPLFYAAGGARTGSLSVHKFLALWRKVLVTCHDDAARFVRLLSGPGGRGLAQEDFQPLLQDVVNTHPGLAFLKEAPEFHSRYISTVIQRIFYTVNRSWSGRITCSELRRSRFLQEVERLEAEPDVSRLPAFFSYAHFYVIYVRFWELDGDHDLVIDRDDLGRHGDRAISSRVIDRIFSGAVTRGGSEHAHRKLTYEDFVWFLISEEDKTTPTSIEYWFRVMDLDGDGALSMFELEFFYAEQAQRLEARGVEPPPFRDLACQMLDMVNPRVPGQISLPDLRRCGLAAIFFDAFINADKFLAREQRELGAGPARDADPAGTALSDWDRFVEEEYDFLVAEEGLPTPPDPDLYEFQLGEDDDDLEPL", "length": 568, "header": "tr|A0A9J7K1V1-1|A0A9J7K1V1_CRIGR Isoform 1 of Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit delta-like isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC113837435 PE=4 SV=1 CANONICAL=A0A9J7K1V1-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 386, "start_aa": "Thr", "end_pos": 386, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr386", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K1V1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1V1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K1V1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1V1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113837435", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113837435", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K1V1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1V1" } ], "pmid": "" }, { "name": "protein phosphatase regulator activity", "id": "GO:0019888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019888", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K1V1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1V1" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K1V1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1V1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "protein phosphatase type 2A complex", "id": "GO:0000159", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000159", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K1V1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1V1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 299, "end_pos": 301, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": 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"evidence": [ { "id": "XP_035296261", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035296261" } ] } ], "protein_names": [ { "name": "Beta/gamma crystallin domain-containing protein 1 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7K1V4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1V4/entry#names_and_taxonomy" } ] }, { "name": "beta/gamma crystallin domain-containing protein 1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035296261", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035296261" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035296261", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035296261" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K1V4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1V4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Crybg1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1V4", "locus": {} } ], "crossref": [ { "id": "cd23464", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23464", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100774444", "url": "https://www.ncbi.nlm.nih.gov/gene/100774444", "database": "GeneID", "categories": [ "Genome 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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035296278", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035296278" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K1V9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1V9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC118238364", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1V9", "locus": {} } ], "crossref": [ { "id": "A0A9J7K1V9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K1V9", "database": "AlphaFoldDB", "categories": [] }, { "id": "118238364", "url": "https://www.ncbi.nlm.nih.gov/gene/118238364", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:118238364", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118238364", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_035296278", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035296278", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K1V9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1V9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K1V9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1V9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGLPARQVPEAQGLLWACSGLRKPGVREPTLGDARILVLLFLFFFFFLMKRGKSDKIRKRGRGGRRRRKKKKEKSLTPDWKRPLTCAIFLPCSSAKNKTVQTLARGRRALEFSVCRNDSKEKGHHSPRSPDRLREPAAPPWPWAGEIPRPALPAPLLRGRATPQLCAREQLADPTPPPGPPPPPPAPLLESEGGALLGQPATPGRGLASPAGLAQPRSRESRRSEPPPAPAALALVRPRHPGPSNFVPGEISPSRLPDRPCPCLGSHRRPGSQNVAPRVT", "length": 280, "header": "tr|A0A9J7K1V9-1|A0A9J7K1V9_CRIGR Isoform 1 of Vegetative cell wall protein gp1-like OS=Cricetulus griseus OX=10029 GN=LOC118238364 PE=4 SV=1 CANONICAL=A0A9J7K1V9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K1V9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1V9/entry", "sequence": { "sequence": "MGLPARQVPEAQGLLWACSGLRKPGVREPTLGDARILVLLFLFFFFFLMKRGKSDKIRKRGRGGRRRRKKKKEKSLTPDWKRPLTCAIFLPCSSAKNKTVQTLARGRRALEFSVCRNDSKEKGHHSPRSPDRLREPAAPPWPWAGEIPRPALPAPLLRGRATPQLCAREQLADPTPPPGPPPPPPAPLLESEGGALLGQPATPGRGLASPAGLAQPRSRESRRSEPPPAPAALALVRPRHPGPSNFVPGEISPSRLPDRPCPCLGSHRRPGSQNVAPRVT", "length": 280, "header": "tr|A0A9J7K1V9-1|A0A9J7K1V9_CRIGR Isoform 1 of Vegetative cell wall protein gp1-like OS=Cricetulus griseus OX=10029 GN=LOC118238364 PE=4 SV=1 CANONICAL=A0A9J7K1V9-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 202, "start_aa": "Thr", "end_pos": 202, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr202", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_003615479.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003512549", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003512549" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K215", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K215" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100750436", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K215", "locus": {} } ], "crossref": [ { "id": "A0A9J7K215", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K215", "database": "AlphaFoldDB", "categories": [] }, { "id": "100750436", "url": "https://www.ncbi.nlm.nih.gov/gene/100750436", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006187", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006187", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100750436", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750436", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K215", "url": "https://www.orthodb.org/?gene=A0A9J7K215", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12002", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12002", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_003512549", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003512549", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K215", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K215", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K215-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K215-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDFLTLDKQRFANGKECIFKLTGFFSSLTAFVLQIVIASSQCWRLWVFNDNIVKFVSFGLWEAHYPQEFNVSGTVIKMLVHTPINSNWTISTEYQYAQNLMVGAILMKPIVLVCSSMAIKISYMKYPYVEMQIYCYKVSALVMCLSGLFTFVSVSWNHIVDLYGQTTLDFPPDFPVKKEDLIMKYFTAVFPFGILISTMSLFGAIFFVSEISNLKLQSQEKARCASKLTKQDV", "length": 233, "header": "tr|A0A9J7K215-1|A0A9J7K215_CRIGR Isoform 1 of Uncharacterized protein LOC100750436 OS=Cricetulus griseus OX=10029 GN=LOC100750436 PE=3 SV=1 CANONICAL=A0A9J7K215-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K215-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K215/entry", "sequence": { "sequence": "MDFLTLDKQRFANGKECIFKLTGFFSSLTAFVLQIVIASSQCWRLWVFNDNIVKFVSFGLWEAHYPQEFNVSGTVIKMLVHTPINSNWTISTEYQYAQNLMVGAILMKPIVLVCSSMAIKISYMKYPYVEMQIYCYKVSALVMCLSGLFTFVSVSWNHIVDLYGQTTLDFPPDFPVKKEDLIMKYFTAVFPFGILISTMSLFGAIFFVSEISNLKLQSQEKARCASKLTKQDV", "length": 233, "header": "tr|A0A9J7K215-1|A0A9J7K215_CRIGR Isoform 1 of Uncharacterized protein LOC100750436 OS=Cricetulus griseus OX=10029 GN=LOC100750436 PE=3 SV=1 CANONICAL=A0A9J7K215-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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computational analysis. This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035305618", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305618" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K219", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K219" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100767676", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K219", "locus": {} } ], "crossref": [ { "id": "100767676", "url": "https://www.ncbi.nlm.nih.gov/gene/100767676", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000157", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000157", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035897", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035897", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100767676", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767676", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K219", "url": "https://www.orthodb.org/?gene=A0A9J7K219", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24365", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24365", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24365:SF554", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24365:SF554", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01582", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01582", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035305618", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305618", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K219", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K219", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K219-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K219-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTKESWALETGEASSSLSCVDLAGRFRSLLHLKQSPYVKAMPLNMSIAYVKEFFPVVTXMPVAVKMSWGSSVPSLQLLLMLTGLSLLSLVETYGFNKCTQYEFDIHHVFCIRKKIINLTDAISDIPRYTTHLNLTHNYIQVLPPRSFTNLPALVDLRLEWNLIWKIDEGAFRGLENLTLLNLVENKIQSVNTSFEGLSSLETLLLSHNPITHIHKKAFAPLVKLKYLNLSRNNISNFSVILEAVQHLRCLEYLDLTNNNIVYLDHSPKSLVSLIHLSFQGNKLMELNFSALSLPNLATLDASQNGHGVIHNVYLETLPQLKSLNLSGTLVKLETLSAKHLQNVRIMDLSNQELRHGHLNMETVCHLLRNLPMLEALVFQKNATNTEGIKHLAKCTRLFFLDLGQNSDLVHLNDSEFDGLPSLQRLNLNKCQLSFISNRTWGSLQNLTILDLSNNKFKSFPDFAFSPLKSLKSLFLSRNPITELNNLAFSGLFSLKELNLAGCWIVTIDRYSFAQFPNLELLDLGSNNIRTLNRGTFRCLKKLKVLILSHNRLEIMGPRAFSGLTCLQQLDLVYNSLSYFHEHLFSGLEELQVLKLSFNKIKYETPKTLKYPPFMKLKSLKQLSLEGQQNGLQVVPSNFFQGLSSLQELLLGKNPSVFLDHHQFDPLINLTKLDISGTKGGDRSLYLNASLFKKLKRLKVLRLENNNLDSLVPGMFSSLQSLQVLSLRFNSLKVINQSHLENLKSLMFFDVYGNKLQCNCDNMWFKNWSMNTGEVHIPFLRSYPCQQPDSQSLLIDFDDAMCSFDLGKVYFLLSFSTVLTTMVFSWFSAKMISSLWYGLYICRAWYFTKWHKTEKKFLYDAFVSFSAADEKWVYKKLVPALEEGSQTTFKLCLHQRDFEPGIDIFENIQNAINTSRKTLCVVSNQYLHSEWCQLEVQLASMKMFYEHKDVIILIFLEEIPNYKLSTYHRLRKLINRQTFITWPESAHQQPLFWARIRNALGNETVAKEDAHLTVVE", "length": 1015, "header": "tr|A0A9J7K219-1|A0A9J7K219_CRIGR Isoform 1 of LOW QUALITY PROTEIN: toll-like receptor 13 OS=Cricetulus griseus OX=10029 GN=LOC100767676 PE=3 SV=1 CANONICAL=A0A9J7K219-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K219-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K219/entry", "sequence": { "sequence": "MTKESWALETGEASSSLSCVDLAGRFRSLLHLKQSPYVKAMPLNMSIAYVKEFFPVVTXMPVAVKMSWGSSVPSLQLLLMLTGLSLLSLVETYGFNKCTQYEFDIHHVFCIRKKIINLTDAISDIPRYTTHLNLTHNYIQVLPPRSFTNLPALVDLRLEWNLIWKIDEGAFRGLENLTLLNLVENKIQSVNTSFEGLSSLETLLLSHNPITHIHKKAFAPLVKLKYLNLSRNNISNFSVILEAVQHLRCLEYLDLTNNNIVYLDHSPKSLVSLIHLSFQGNKLMELNFSALSLPNLATLDASQNGHGVIHNVYLETLPQLKSLNLSGTLVKLETLSAKHLQNVRIMDLSNQELRHGHLNMETVCHLLRNLPMLEALVFQKNATNTEGIKHLAKCTRLFFLDLGQNSDLVHLNDSEFDGLPSLQRLNLNKCQLSFISNRTWGSLQNLTILDLSNNKFKSFPDFAFSPLKSLKSLFLSRNPITELNNLAFSGLFSLKELNLAGCWIVTIDRYSFAQFPNLELLDLGSNNIRTLNRGTFRCLKKLKVLILSHNRLEIMGPRAFSGLTCLQQLDLVYNSLSYFHEHLFSGLEELQVLKLSFNKIKYETPKTLKYPPFMKLKSLKQLSLEGQQNGLQVVPSNFFQGLSSLQELLLGKNPSVFLDHHQFDPLINLTKLDISGTKGGDRSLYLNASLFKKLKRLKVLRLENNNLDSLVPGMFSSLQSLQVLSLRFNSLKVINQSHLENLKSLMFFDVYGNKLQCNCDNMWFKNWSMNTGEVHIPFLRSYPCQQPDSQSLLIDFDDAMCSFDLGKVYFLLSFSTVLTTMVFSWFSAKMISSLWYGLYICRAWYFTKWHKTEKKFLYDAFVSFSAADEKWVYKKLVPALEEGSQTTFKLCLHQRDFEPGIDIFENIQNAINTSRKTLCVVSNQYLHSEWCQLEVQLASMKMFYEHKDVIILIFLEEIPNYKLSTYHRLRKLINRQTFITWPESAHQQPLFWARIRNALGNETVAKEDAHLTVVE", "length": 1015, "header": "tr|A0A9J7K219-1|A0A9J7K219_CRIGR Isoform 1 of LOW QUALITY PROTEIN: toll-like receptor 13 OS=Cricetulus griseus OX=10029 GN=LOC100767676 PE=3 SV=1 CANONICAL=A0A9J7K219-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K219", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K219" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K219", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K219" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100767676", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767676", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K219", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K219" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "inflammatory response", "id": "GO:0006954", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006954", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K219", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K219" } ], "pmid": "" }, { "name": "innate immune response", "id": "GO:0045087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045087", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K219", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K219" } ], "pmid": "" }, { "name": "toll-like receptor signaling pathway", "id": "GO:0002224", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002224", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K219", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K219" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "signaling receptor activity", "id": "GO:0038023", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0038023", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K219", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K219" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1001, "end_pos": 1003, "annotation": "n_glycosylation_sequon" }, { "start_pos": 117, "end_pos": 119, "annotation": "n_glycosylation_sequon" }, { "start_pos": 133, "end_pos": 135, "annotation": "n_glycosylation_sequon" }, { "start_pos": 176, "end_pos": 178, "annotation": "n_glycosylation_sequon" }, { "start_pos": 191, "end_pos": 193, "annotation": "n_glycosylation_sequon" }, { "start_pos": 228, "end_pos": 230, "annotation": "n_glycosylation_sequon" }, { "start_pos": 233, "end_pos": 235, "annotation": "n_glycosylation_sequon" }, { "start_pos": 236, "end_pos": 238, "annotation": "n_glycosylation_sequon" }, { "start_pos": 287, "end_pos": 289, "annotation": "n_glycosylation_sequon" }, { "start_pos": 324, "end_pos": 326, "annotation": "n_glycosylation_sequon" }, { "start_pos": 381, "end_pos": 383, "annotation": "n_glycosylation_sequon" }, { "start_pos": 412, "end_pos": 414, "annotation": "n_glycosylation_sequon" }, { "start_pos": 437, "end_pos": 439, "annotation": "n_glycosylation_sequon" }, { "start_pos": 445, "end_pos": 447, "annotation": "n_glycosylation_sequon" }, { "start_pos": 44, "end_pos": 46, "annotation": "n_glycosylation_sequon" }, { "start_pos": 668, "end_pos": 670, "annotation": "n_glycosylation_sequon" }, { "start_pos": 687, "end_pos": 689, "annotation": "n_glycosylation_sequon" }, { "start_pos": 735, "end_pos": 737, "annotation": "n_glycosylation_sequon" }, { "start_pos": 766, "end_pos": 768, "annotation": "n_glycosylation_sequon" }, { "start_pos": 912, "end_pos": 914, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7K219", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K219" }, { "id": "PS50104", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50104" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TIR", "eco_id": "ECO_0000259", "start_pos": 856, "end_pos": 999, "start_aa": "Phe", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1001, "end_pos": 1003 }, { "start_pos": 117, "end_pos": 119 }, { "start_pos": 133, "end_pos": 135 }, { "start_pos": 176, "end_pos": 178 }, { "start_pos": 191, "end_pos": 193 }, { "start_pos": 228, "end_pos": 230 }, { "start_pos": 233, "end_pos": 235 }, { "start_pos": 236, "end_pos": 238 }, { "start_pos": 287, "end_pos": 289 }, { "start_pos": 324, "end_pos": 326 }, { "start_pos": 381, "end_pos": 383 }, { "start_pos": 412, "end_pos": 414 }, { "start_pos": 437, "end_pos": 439 }, { "start_pos": 445, "end_pos": 447 }, { "start_pos": 44, 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7K222-1", "uniprot_ac": "A0A9J7K222", "uniprot_id": "A0A9J7K222_CRIGR", "mass": { "chemical_mass": 25193.0, "monoisotopic_mass": 25193.0 }, "refseq": { "ac": "XP_035305635", "name": "odorant-binding protein-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305635" }, "gene_names": [ { "name": "LOC113837654", "type": "recommended", "evidence": [ { "id": "A0A9J7K222", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K222" } ] }, { "name": "LOC113837654", "type": "synonym", "evidence": [ { "id": "XP_035305635", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305635" } ] } ], "protein_names": [ { "name": "Odorant-binding protein-like", "type": "synonym", "evidence": [ { "id": "A0A9J7K222", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K222/entry#names_and_taxonomy" } ] }, { "name": "odorant-binding protein-like", "type": "synonym", "evidence": [ { "id": "XP_035305635", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305635" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 28% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035305635", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305635" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K222", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K222" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113837654", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K222", "locus": {} } ], "crossref": [ { "id": "A0A9J7K222", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K222", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd19427", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19427", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "113837654", "url": "https://www.ncbi.nlm.nih.gov/gene/113837654", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002345", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002345", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002448", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002448", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012674", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012674", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113837654", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113837654", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K222", "url": "https://www.orthodb.org/?gene=A0A9J7K222", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11430", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11430", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11430:SF65", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11430:SF65", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00061", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00061", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035305635", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305635", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K222", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K222", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K222-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K222-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVKFLLLALAFGLAHADDYAELQGKWETIAIAANNVDKIEKEGPMRLYVREIDCNDDCSEMGVTFYVNANNQCSKTKVIGYRQADGTYRTQFEGDNTFKPVHATPENIVFVTDNVDREGRKTKLIYVVGKGQPLTSEQHEKLVEFAHEKNIPEENIHNVLATGVSSRTQEPEPETAPGLLGPLDGGGTVTRALTVSGFVGSHRVWILLAYPWHQMSASRAVELEENS", "length": 227, "header": "tr|A0A9J7K222-1|A0A9J7K222_CRIGR Isoform 1 of Odorant-binding protein-like OS=Cricetulus griseus OX=10029 GN=LOC113837654 PE=3 SV=1 CANONICAL=A0A9J7K222-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K222-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K222/entry", "sequence": { "sequence": "MVKFLLLALAFGLAHADDYAELQGKWETIAIAANNVDKIEKEGPMRLYVREIDCNDDCSEMGVTFYVNANNQCSKTKVIGYRQADGTYRTQFEGDNTFKPVHATPENIVFVTDNVDREGRKTKLIYVVGKGQPLTSEQHEKLVEFAHEKNIPEENIHNVLATGVSSRTQEPEPETAPGLLGPLDGGGTVTRALTVSGFVGSHRVWILLAYPWHQMSASRAVELEENS", "length": 227, "header": "tr|A0A9J7K222-1|A0A9J7K222_CRIGR Isoform 1 of Odorant-binding protein-like OS=Cricetulus griseus OX=10029 GN=LOC113837654 PE=3 SV=1 CANONICAL=A0A9J7K222-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K222", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K222" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K222", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K222" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113837654", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113837654", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K222", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K222" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "small molecule binding", "id": "GO:0036094", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036094", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K222", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K222" } ], "pmid": "" }, { "name": "odorant binding", "id": "GO:0005549", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005549", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K222", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K222" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7K222", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K222" }, { "id": "PF00061", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00061" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Lipocalin/cytosolic fatty-acid binding", "eco_id": "ECO_0000259", "start_pos": 23, "end_pos": 160, "start_aa": "Gln", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7K230-1", "uniprot_ac": "A0A9J7K230", "uniprot_id": "A0A9J7K230_CRIGR", "mass": { "chemical_mass": 56578.0, "monoisotopic_mass": 56578.0 }, "refseq": { "ac": "XP_027290357", "name": "zinc finger protein OZF-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027290357" }, "gene_names": [ { "name": "LOC113839104", "type": "recommended", "evidence": [ { "id": "A0A9J7K230", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K230" } ] }, { "name": "LOC113839104", "type": "synonym", "evidence": [ { "id": "XP_027290357", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027290357" } ] } ], "protein_names": [ { "name": "Zinc finger protein OZF-like", "type": "synonym", "evidence": [ { "id": "A0A9J7K230", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K230/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein OZF-like", "type": "synonym", "evidence": [ { "id": "XP_027290357", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027290357" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 28% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023277175.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027290357.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027290357", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027290357" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K230", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K230" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113839104", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K230", "locus": {} } ], "crossref": [ { "id": "A0A9J7K230", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K230", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "113839104", "url": "https://www.ncbi.nlm.nih.gov/gene/113839104", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113839104", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113839104", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K230", "url": "https://www.orthodb.org/?gene=A0A9J7K230", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24394", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24394", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24394:SF48", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24394:SF48", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027290357", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027290357", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K230", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K230", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K230-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K230-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSQDLLSFKDVSVDFTREEWQCLDSSQRALYVDVMLENYNNLVSVENYYICDPVHQHKKTEKKSCQCTEFGKILHDPSTCALFRMRETTENSNDYRCSSPGEASLDLSNADRHENMHTGEQPCTSKDCEESLNLSSSITEDHRLFTTKQEHREEEYDKCFNTTYTQMQQPNYTGEKPYQCEQCKKCFTTASYLIVHHRIHTGEKPYTCKYCDKSFVMKSSLTKHERIHTGEKPYTCEDCNKSFNVSSNLTLHKRIHTGKKSYKCQGCDKSFTTRSSLTLHQRIHTGEKPYTCKDCDKSFIVKTKLKQHQRIHTGEKPYTCKDCGKSFTVKSTLTEHQRIHTGEKPYTCNYCDKSFTVRSTLTVHERTHTGQKPYKCQECDKSFTTCTYFREHQKIHTGEKSYKCGECGKCFTTCTYLRKHKKIHAGKKPYKCEECDMAFVDSSNLRKHWRVHTGEKPYTCSPCEKSFSSKKNLSTHQRAHTRKKI", "length": 485, "header": "tr|A0A9J7K230-1|A0A9J7K230_CRIGR Isoform 1 of Zinc finger protein OZF-like OS=Cricetulus griseus OX=10029 GN=LOC113839104 PE=3 SV=1 CANONICAL=A0A9J7K230-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K230-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K230/entry", "sequence": { "sequence": "MSQDLLSFKDVSVDFTREEWQCLDSSQRALYVDVMLENYNNLVSVENYYICDPVHQHKKTEKKSCQCTEFGKILHDPSTCALFRMRETTENSNDYRCSSPGEASLDLSNADRHENMHTGEQPCTSKDCEESLNLSSSITEDHRLFTTKQEHREEEYDKCFNTTYTQMQQPNYTGEKPYQCEQCKKCFTTASYLIVHHRIHTGEKPYTCKYCDKSFVMKSSLTKHERIHTGEKPYTCEDCNKSFNVSSNLTLHKRIHTGKKSYKCQGCDKSFTTRSSLTLHQRIHTGEKPYTCKDCDKSFIVKTKLKQHQRIHTGEKPYTCKDCGKSFTVKSTLTEHQRIHTGEKPYTCNYCDKSFTVRSTLTVHERTHTGQKPYKCQECDKSFTTCTYFREHQKIHTGEKSYKCGECGKCFTTCTYLRKHKKIHAGKKPYKCEECDMAFVDSSNLRKHWRVHTGEKPYTCSPCEKSFSSKKNLSTHQRAHTRKKI", "length": 485, "header": "tr|A0A9J7K230-1|A0A9J7K230_CRIGR Isoform 1 of Zinc finger protein OZF-like OS=Cricetulus griseus OX=10029 GN=LOC113839104 PE=3 SV=1 CANONICAL=A0A9J7K230-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [], "pathway": [ { "id": "cge:113839104", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113839104", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K230", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K230" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K230", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K230" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K230", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K230" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { 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##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. 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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035294619", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035294619" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K260", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K260" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fam170a", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K260", "locus": {} } ], "crossref": [ { "id": "A0A9J7K260", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K260", "database": "AlphaFoldDB", "categories": [] }, { "id": "100772259", "url": "https://www.ncbi.nlm.nih.gov/gene/100772259", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR040879", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040879", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772259", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772259", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K260", "url": "https://www.orthodb.org/?gene=A0A9J7K260", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR33517", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33517", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33517:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33517:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF17734", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17734", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035294619", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035294619", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K260", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K260", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K260-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K260-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKRRQKRKHLEIEESEEADEKSEGISKSQEDVPQPESTGVAKAQSPGVGEVSSASEYFSCVSSPHKLIHRSKGTRKSQQDSSISTFPLELVPEGDATNVTSQRPFSSCPSYKTCVSSLCTDKDDKGMKIYYMQVQMKKGVVVSWDTKETSESPEKQPRMEEATLPDGVWVGTPPSDVSTRNPLSDSEPSGEEKEHEEKPESDSPPGSPMIEERPRAKTPDWLVTMENGYRCMACCRGFATIENLQEHVQYGIREGFSCHVFHLTMAQMIGNAASESTQKEEENNNKEKENHKEKKTEEQQPKEENGTKQPWSQCPGCMFDSPKDRRRRKDHQDSSGSRQNGNSVKENEKTNTQQNT", "length": 356, "header": "tr|A0A9J7K260-1|A0A9J7K260_CRIGR Isoform 1 of Protein FAM170A OS=Cricetulus griseus OX=10029 GN=Fam170a PE=4 SV=1 CANONICAL=A0A9J7K260-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K260-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K260/entry", "sequence": { "sequence": "MKRRQKRKHLEIEESEEADEKSEGISKSQEDVPQPESTGVAKAQSPGVGEVSSASEYFSCVSSPHKLIHRSKGTRKSQQDSSISTFPLELVPEGDATNVTSQRPFSSCPSYKTCVSSLCTDKDDKGMKIYYMQVQMKKGVVVSWDTKETSESPEKQPRMEEATLPDGVWVGTPPSDVSTRNPLSDSEPSGEEKEHEEKPESDSPPGSPMIEERPRAKTPDWLVTMENGYRCMACCRGFATIENLQEHVQYGIREGFSCHVFHLTMAQMIGNAASESTQKEEENNNKEKENHKEKKTEEQQPKEENGTKQPWSQCPGCMFDSPKDRRRRKDHQDSSGSRQNGNSVKENEKTNTQQNT", "length": 356, "header": "tr|A0A9J7K260-1|A0A9J7K260_CRIGR Isoform 1 of Protein FAM170A OS=Cricetulus griseus OX=10029 GN=Fam170a PE=4 SV=1 CANONICAL=A0A9J7K260-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027288168.1. COMPLETENESS: incomplete on the carboxy end.", "evidence": [ { "database": "RefSeq", "id": "XP_027288168", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288168" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K278", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K278" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100767300", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K278", "locus": {} } ], "crossref": [ { "id": "100767300", "url": "https://www.ncbi.nlm.nih.gov/gene/100767300", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001373", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001373", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016158", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016158", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016159", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016159", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036317", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036317", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045093", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045093", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR059120", "url": "https://www.ebi.ac.uk/interpro/entry/IPR059120", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100767300", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767300", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K278", "url": "https://www.orthodb.org/?gene=A0A9J7K278", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11932", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11932", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00888", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00888", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26557", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26557", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027288168", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288168", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K278", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K278", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K278-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K278-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEESSSSSFSSSPTAATSQQQQQQLKNMSILISSVASVHHANRLSKSSTTVSSFANSKPGSAKKLVIKNFKDKPKLPENYTDKTWKKLKEAVEAIQNSTSIKYNLEELYQVVESLCSYKISANLYKQLRQICEDHIKGQIHQFREDSLNSVLFLKKIDKCWENHCRQMIMIRSIFVCLFLDRTYVLQTSMLHSIWDMGLELCRVHIISDQKVQTKTIDGILLLRERERNGEAIDRSLLRSLLSMLSDLQIYQDSFEQLFLEETNWLYAAEGQKLMQEREVPEYLHHINKCLEEEADRLITYLDQTTQKSLIVSVGKQLLGEHLTTILQKGLNNLLYENRIQDLSLLYQLFSRVQGEIQVLLQQWIEYIKAFGSTIVINPEIDNTMVQELLDFKNTVDHIIDTCFLINEKFINAMKEAFETFIDKRPNKPAELIAKYVDXKLRAGNKEATDEELEKMLDKIMIIFRFIYGKDVFEAFYKKDLAKCLLFGKSESVDAEKMLSKLKHECGAAFTGKLEGMFKDMELSKDIMVQFKQYMQNQNVPGNIXLTVNILTMGYWPTCEPMEVHLPPEMVKLQEIFKTFYLGKHSGTKLQWQSTLGHCVLKAEFKEGKNNFRS", "length": 615, "header": "tr|A0A9J7K278-1|A0A9J7K278_CRIGR Isoform 1 of LOW QUALITY PROTEIN: cullin-4B-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100767300 PE=3 SV=1 CANONICAL=A0A9J7K278-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K278-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K278/entry", "sequence": { "sequence": "MAEESSSSSFSSSPTAATSQQQQQQLKNMSILISSVASVHHANRLSKSSTTVSSFANSKPGSAKKLVIKNFKDKPKLPENYTDKTWKKLKEAVEAIQNSTSIKYNLEELYQVVESLCSYKISANLYKQLRQICEDHIKGQIHQFREDSLNSVLFLKKIDKCWENHCRQMIMIRSIFVCLFLDRTYVLQTSMLHSIWDMGLELCRVHIISDQKVQTKTIDGILLLRERERNGEAIDRSLLRSLLSMLSDLQIYQDSFEQLFLEETNWLYAAEGQKLMQEREVPEYLHHINKCLEEEADRLITYLDQTTQKSLIVSVGKQLLGEHLTTILQKGLNNLLYENRIQDLSLLYQLFSRVQGEIQVLLQQWIEYIKAFGSTIVINPEIDNTMVQELLDFKNTVDHIIDTCFLINEKFINAMKEAFETFIDKRPNKPAELIAKYVDXKLRAGNKEATDEELEKMLDKIMIIFRFIYGKDVFEAFYKKDLAKCLLFGKSESVDAEKMLSKLKHECGAAFTGKLEGMFKDMELSKDIMVQFKQYMQNQNVPGNIXLTVNILTMGYWPTCEPMEVHLPPEMVKLQEIFKTFYLGKHSGTKLQWQSTLGHCVLKAEFKEGKNNFRS", "length": 615, "header": "tr|A0A9J7K278-1|A0A9J7K278_CRIGR Isoform 1 of LOW QUALITY PROTEIN: cullin-4B-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100767300 PE=3 SV=1 CANONICAL=A0A9J7K278-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. 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Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. 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"length": 1032, "header": "tr|A0A9J7KDP1-1|A0A9J7KDP1_CRIGR Computationally mapped isoform of Protein FAM160A1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Fam160a1 PE=3 SV=1 CANONICAL=A0A9J7K2G2-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 155, "start_aa": "Thr", "end_pos": 155, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr155", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid 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"https://www.ebi.ac.uk/interpro/entry/pfam/PF19314" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FHF complex subunit HOOK-interacting protein C-terminal", "eco_id": "ECO_0000259", "start_pos": 865, "end_pos": 956, "start_aa": "Thr", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 155 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 593, "end_pos": 595 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", 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computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035296942", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035296942" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K2G4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2G4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC118238427", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2G4", "locus": {} } ], "crossref": [ { "id": "118238427", "url": "https://www.ncbi.nlm.nih.gov/gene/118238427", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017907", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017907", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027370", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027370", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051435", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051435", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:118238427", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118238427", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K2G4", "url": "https://www.orthodb.org/?gene=A0A9J7K2G4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22791", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22791", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22791:SF17", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22791:SF17", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13445", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13445", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035296942", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035296942", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K2G4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2G4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K2G4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2G4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAPANDSGGSTQSRSSSPGSREGVGGTAAGARDDWNTVVRATTATAPNLPPLEDYECKICYNYFDADRRAPKLLACLHTFCQECLSQLQLRAAAAASSAAPERAPRPPPWHGPPGXIACPVCRHRTPLPDSRVHGLPNNTKLAEAFPLALRAAQDPLPQDRLPPLASRRPAPTTXPPPAPAPQPPQPAPPPAEDTAPGPRGRPGLRAPGAYESCQNCKRAALTAGCVCVVFSFLSMVVLLFTGLIFVNHYGGGGGGGGGGGPPSSGSSPGPAPAPGSPSPSPVGPICLSVASILALFSVVVTWIICWLKYRPEGAAAGSAGSGGGGSRARATAAPGSGRRSDT", "length": 344, "header": "tr|A0A9J7K2G4-1|A0A9J7K2G4_CRIGR Isoform 1 of LOW QUALITY PROTEIN: RING finger protein 225-like OS=Cricetulus griseus OX=10029 GN=LOC118238427 PE=4 SV=1 CANONICAL=A0A9J7K2G4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K2G4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2G4/entry", "sequence": { "sequence": "MAAPANDSGGSTQSRSSSPGSREGVGGTAAGARDDWNTVVRATTATAPNLPPLEDYECKICYNYFDADRRAPKLLACLHTFCQECLSQLQLRAAAAASSAAPERAPRPPPWHGPPGXIACPVCRHRTPLPDSRVHGLPNNTKLAEAFPLALRAAQDPLPQDRLPPLASRRPAPTTXPPPAPAPQPPQPAPPPAEDTAPGPRGRPGLRAPGAYESCQNCKRAALTAGCVCVVFSFLSMVVLLFTGLIFVNHYGGGGGGGGGGGPPSSGSSPGPAPAPGSPSPSPVGPICLSVASILALFSVVVTWIICWLKYRPEGAAAGSAGSGGGGSRARATAAPGSGRRSDT", "length": 344, "header": "tr|A0A9J7K2G4-1|A0A9J7K2G4_CRIGR Isoform 1 of LOW QUALITY PROTEIN: RING finger protein 225-like OS=Cricetulus griseus OX=10029 GN=LOC118238427 PE=4 SV=1 CANONICAL=A0A9J7K2G4-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 28, "start_aa": "Thr", "end_pos": 28, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr28", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"MESSLKYINKKFPNIDVRNSTQHLGPVHREKAEIIRFLTNYYQSFVDVMEFRDHVYELLNTIDACQCHFDINLNFDFTRSYLDLIVTYTSVILLLSRIEDRRILIGTYNCAHEMLHGHSDPSFARLGQMVLEYDHPLKKLTEEFGPHTKAVSGALLSLHFLFVRRNQGAEQWRSAQLLSLISSPPAMINPANSDTMACEYLSVEVMERWIIIGFLLCHGCLNSNSQCQQLWKLCLQGSLYITLIREDVLQVHKVTEDLFSSLKGYSKRVADIKESKEHAIANSGQFHCQRRQFLRIAVRELETVLNDEPGLLGPKALFAFMALSFIRDEVTWLVRHTENVTKTKTPEDYADSSIAELLFLLEEIRALVRRHIKVIQQYHVQYLARFDVLVLSDIIQNLSVCPEEESVIMSSFVSTLSSLNLKQVDNEEKFDFSGLRLDWFRLQVYTSVLKGPLHLHENPDLAKVMNLIIFHSQMLDSVEKMLVETSDLSIFCFHLRTFEKMFTMTLEEPSMLRYTIAFPLICAHFVHCTHEMCPEEYPHLKNHGLHHCNSFLEELAKQTSNCVLEICAEQRNLSEQLLPKHCATTISKAKNKKSMKQRQAPRKGEPERDKPGAESHRKNRSIVTNMDKLHLNLTELALAMNHVHSFTVFEHTIFPSEYLSSHLEARLNRAIVTLAGYNATTQEILRPSELLAGVKAYISFIQSLAQFLGADASRVVRNALLQQTQPLDSCGEQTVTTLYTNWYLESLLRQASSGAIVLSPAMQAFISLPRDGEQNFSAEEFSDISEMRALAEILGPYGMKFLSENLMWHVTSQIVELKKLVVENMDILVQIRSNFSKPDVMASLLPQLMGAENVLKRMTIIGVILSFRAMAQEGLQEVFSSHCPFLMGPIECLKEFVTPDTDIKVTLSVFELASAAGVSCDIDPALVAAIANLKADNSSPEEEYKVACLLLIFLAVSLPLLATDPSSFYSIEKDGYNNNIHCLTKAIIQVSAALFTLYNKNIETHLKEFLVVASVSLLQLGQETDKLKTRNRESISLLMRLVVEESPFLTLDMLESCFPYVLLRNAYREVSRAFYLNRLPASTH", "length": 1084, "header": "tr|A0A9J7K2M0-1|A0A9J7K2M0_CRIGR Isoform 1 of Nck-associated protein 1-like OS=Cricetulus griseus OX=10029 GN=Nckap1l PE=4 SV=1 CANONICAL=A0A9J7K2M0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K2M0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2M0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K2M0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2M0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100770185", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770185", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "cell migration", "id": "GO:0016477", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016477", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K2M0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2M0" } ], "pmid": "" }, { "name": "neuron projection morphogenesis", "id": "GO:0048812", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048812", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K2M0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2M0" } ], "pmid": "" }, { "name": "cortical actin cytoskeleton organization", "id": "GO:0030866", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030866", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K2M0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2M0" } ], "pmid": "" }, { "name": "cell projection assembly", "id": "GO:0030031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030031", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K2M0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2M0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "SCAR complex", "id": "GO:0031209", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031209", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K2M0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2M0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 19, "end_pos": 21, "annotation": 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Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027288515", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288515" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K2M1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2M1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC103164139", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2M1", "locus": {} } ], "crossref": [ { "id": "103164139", "url": "https://www.ncbi.nlm.nih.gov/gene/103164139", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002190", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002190", "database": "InterPro", "categories": [ "Protein 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"OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11736", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11736", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11736:SF164", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11736:SF164", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01454", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01454", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12440", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12440", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027288515", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288515", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H6G1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6G1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": 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"XP_027288792", "name": "LOW QUALITY PROTEIN: MLV-related proviral Env polyprotein-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288792" }, "gene_names": [ { "name": "LOC113837701", "type": "recommended", "evidence": [ { "id": "A0A9J7K2M8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2M8" } ] }, { "name": "LOC113837701", "type": "synonym", "evidence": [ { "id": "XP_027288792", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288792" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: MLV-related proviral Env polyprotein-like", "type": "synonym", "evidence": [ { "id": "XP_027288792", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288792" }, { "id": "A0A9J7K2M8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2M8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel internal stop codons :: corrected 1 genomic stop codon ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027288792", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288792" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K2M8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2M8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113837701", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2M8", "locus": {} } ], "crossref": [ { "id": "cd09851", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09851", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "113837701", "url": "https://www.ncbi.nlm.nih.gov/gene/113837701", "database": "GeneID", "categories": [ 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"MDCTPHSKSFKDKTLSYTLLLIGCLFTPHVATNPHRVYNITWKIANLGTGEIANLSTYIGTLHDGFPPLYVDLCDLVGSDWDPSDQEPFPGYGCHHPGGRIGTRSKDFYVCPGHKPTHGCGGPQEGYCARWGCETTGEAYWKPSSSWDFITLKRREIPGYAGKGPWRCGQRACGPCYDSAGGGGFQGATPGGKCNPLILRFTDAGKRTTWDSPKVWGLRLYRAGKDPVTLFSLYRQITPLSQQSVGPNTVIADQRAPTQFQVPEPPTVPKAITPTXPGAVIFSPTPDALNIEITRDPPGTGDRLLQLIQGVYQALNFSDPNKTQECWLCLVSRPPYYEGVAILGNYSNQTSAATSCGAAMQHKLTISEVSGKGLCIGRIPPSHQELCNQVEPLSQDSRYLVAPYGTYWACSTGLTPCVSTTVLNTTIDFCILIELWPKVTYHQPEYVYSVLGKSTRYKREPISFTVALLLGGITVGGIAAGIGTGTIALQGINHFKLLQQAMHTDIQVLEESVSALEKSLTSLSEVVLQNRXGLDLLFLQEGGLCAALKEECCFYADHTGIVRDSMAKLRERLKQRQQLFESQQGWFEGWFAKSPWLTTLISTLMGPLVILFLILIFGPCILNKLTQFIRERLSVVQALVLTQQYHQLKQIDPEYPETSE", "length": 660, "header": "tr|A0A9J7K2M8-1|A0A9J7K2M8_CRIGR Isoform 1 of LOW QUALITY PROTEIN: MLV-related proviral Env polyprotein-like OS=Cricetulus griseus OX=10029 GN=LOC113837701 PE=4 SV=1 CANONICAL=A0A9J7K2M8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K2M8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2M8/entry", 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"keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K2N2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2N2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"https://www.uniprot.org/uniprotkb/A0A9J7K2P0/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein DDB_G0283697-like isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027288834", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288834" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027288834.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027288834", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288834" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K2P0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2P0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100760342", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2P0", "locus": {} } ], "crossref": [ { "id": "A0A9J7K2P0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K2P0", "database": "AlphaFoldDB", "categories": [] }, { "id": "100760342", "url": "https://www.ncbi.nlm.nih.gov/gene/100760342", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:100760342", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760342", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K2P0", "url": "https://www.orthodb.org/?gene=A0A9J7K2P0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "XP_027288834", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027288834", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K2P0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2P0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K2P0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2P0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASEKTVMETENFWTIPDSESYAVESGTEKGRVSVSKLHLIQVEKTEKRRSKRYMEDSESATSETDSDSERHELASAAVKCFMDIKTAINKLPKHSWSERRTVNSDSESPVMSSDSAKHMKKAEICKSSCNLERLKVAHKSESLQEWLDAKRKQLDSGHSGHWDSSGKYQFRSIVPQDSFGKCQGDLQTFQSITEKDQVDSSSEKYQKKPGNESDQNEPESKRYPIKREKGFDNKGFQVAKEREHLLETDRYDSQKEAHRLGARRKENRPPGFWRPVILTPKLGQEKKTEEHKSLQQKDNRFCRIQLTRYKSEDKTVRFKEASSSLSDKQLSPEKIKEKYSYGFSPDSDTFTDEKFHRKASRKISVYKRHCKEYRYARGCESFKYQISPIPPSSESSTSNVSSRVGSPNSKSLKSATRQKTRRSITFDLDVETQRCARCFMEISDSSFHKCPTNSDDSDSDSPLHGQISLDSKYSLRSKTVRHFKTSRNNPLSRSLDPKHRVGNRCSLHREDFRYSVDSTSYIHCERCSALQNLKGSVDTHTTPMKSEQIMGQHSTYGYIMSTPERVSESGLSAQPQNKDNPDDSARNIKDEADVEEELLSKDETDQEYETNTEDETDAEDETDTEDEDNNKDKKDPKDKSDPDGSDPKDGNSENNTDSNTGSDPSGASGPTSGPDSSNDGDSKNVTDHNNESDPAMENASNSDVNLEYSTDLDNASDLSEDFNQQNNVDTKGSTNPNSASGNKNRTVMDYISGSNNVVAIARNDTGQGNNIFSENIRPISNSLDFTQSENDPNNNPSPSNSHGLLKDLESIYNTKLSNVSSHDVVNPNHIVYPNYGTEPTSTAIHKNTATLKYYSDLNGVTGFTYEVRSSFLVNPNYFGRKKYTIRPSFARSIINANDTSSITSYTSTISYQFTSGEKNAPENKYFPGFSHFNCFNIIIKNIQNAHNSPSTSNINIPYDAEVKASSISSIFKIVYGTVSDFIADTNCTSYPDFLITSEFYDPLELGRAYIIFDNQNVGAQFQNSTGYTYPDISKYATGSVDALDAKESGFLKDFSRVQNPIGIKDPSSFKILSNQNIPLSSFDVIVEAELPDLVKFAISSGAVNQLFKAYAHC", "length": 1114, "header": "tr|A0A9J7K2P0-1|A0A9J7K2P0_CRIGR Isoform 1 of Uncharacterized protein DDB_G0283697-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100760342 PE=4 SV=1 CANONICAL=A0A9J7K2P0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K2P0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2P0/entry", "sequence": { "sequence": "MASEKTVMETENFWTIPDSESYAVESGTEKGRVSVSKLHLIQVEKTEKRRSKRYMEDSESATSETDSDSERHELASAAVKCFMDIKTAINKLPKHSWSERRTVNSDSESPVMSSDSAKHMKKAEICKSSCNLERLKVAHKSESLQEWLDAKRKQLDSGHSGHWDSSGKYQFRSIVPQDSFGKCQGDLQTFQSITEKDQVDSSSEKYQKKPGNESDQNEPESKRYPIKREKGFDNKGFQVAKEREHLLETDRYDSQKEAHRLGARRKENRPPGFWRPVILTPKLGQEKKTEEHKSLQQKDNRFCRIQLTRYKSEDKTVRFKEASSSLSDKQLSPEKIKEKYSYGFSPDSDTFTDEKFHRKASRKISVYKRHCKEYRYARGCESFKYQISPIPPSSESSTSNVSSRVGSPNSKSLKSATRQKTRRSITFDLDVETQRCARCFMEISDSSFHKCPTNSDDSDSDSPLHGQISLDSKYSLRSKTVRHFKTSRNNPLSRSLDPKHRVGNRCSLHREDFRYSVDSTSYIHCERCSALQNLKGSVDTHTTPMKSEQIMGQHSTYGYIMSTPERVSESGLSAQPQNKDNPDDSARNIKDEADVEEELLSKDETDQEYETNTEDETDAEDETDTEDEDNNKDKKDPKDKSDPDGSDPKDGNSENNTDSNTGSDPSGASGPTSGPDSSNDGDSKNVTDHNNESDPAMENASNSDVNLEYSTDLDNASDLSEDFNQQNNVDTKGSTNPNSASGNKNRTVMDYISGSNNVVAIARNDTGQGNNIFSENIRPISNSLDFTQSENDPNNNPSPSNSHGLLKDLESIYNTKLSNVSSHDVVNPNHIVYPNYGTEPTSTAIHKNTATLKYYSDLNGVTGFTYEVRSSFLVNPNYFGRKKYTIRPSFARSIINANDTSSITSYTSTISYQFTSGEKNAPENKYFPGFSHFNCFNIIIKNIQNAHNSPSTSNINIPYDAEVKASSISSIFKIVYGTVSDFIADTNCTSYPDFLITSEFYDPLELGRAYIIFDNQNVGAQFQNSTGYTYPDISKYATGSVDALDAKESGFLKDFSRVQNPIGIKDPSSFKILSNQNIPLSSFDVIVEAELPDLVKFAISSGAVNQLFKAYAHC", "length": 1114, "header": "tr|A0A9J7K2P0-1|A0A9J7K2P0_CRIGR Isoform 1 of Uncharacterized protein DDB_G0283697-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100760342 PE=4 SV=1 CANONICAL=A0A9J7K2P0-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 672, "start_aa": "Thr", "end_pos": 672, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr672", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K2P0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2P0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K2P0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2P0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100760342", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760342", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 1024, "end_pos": 1026, "annotation": "n_glycosylation_sequon" }, { "start_pos": 212, "end_pos": 214, "annotation": "n_glycosylation_sequon" }, { "start_pos": 400, "end_pos": 402, "annotation": "n_glycosylation_sequon" }, { "start_pos": 655, "end_pos": 657, "annotation": "n_glycosylation_sequon" }, { "start_pos": 685, "end_pos": 687, "annotation": "n_glycosylation_sequon" }, { "start_pos": 691, "end_pos": 693, "annotation": "n_glycosylation_sequon" }, { "start_pos": 699, "end_pos": 701, "annotation": "n_glycosylation_sequon" }, { "start_pos": 715, "end_pos": 717, "annotation": "n_glycosylation_sequon" }, { "start_pos": 745, "end_pos": 747, "annotation": "n_glycosylation_sequon" }, { "start_pos": 764, "end_pos": 766, "annotation": "n_glycosylation_sequon" }, { "start_pos": 819, "end_pos": 821, "annotation": "n_glycosylation_sequon" }, { "start_pos": 898, "end_pos": 900, "annotation": "n_glycosylation_sequon" }, { "start_pos": 987, "end_pos": 989, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 672 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1024, "end_pos": 1026 }, { "start_pos": 212, "end_pos": 214 }, { "start_pos": 400, "end_pos": 402 }, { "start_pos": 655, "end_pos": 657 }, { "start_pos": 685, "end_pos": 687 }, { "start_pos": 691, "end_pos": 693 }, { "start_pos": 699, "end_pos": 701 }, { "start_pos": 715, "end_pos": 717 }, { "start_pos": 745, "end_pos": 747 }, { "start_pos": 764, "end_pos": 766 }, { "start_pos": 819, "end_pos": 821 }, { "start_pos": 898, "end_pos": 900 }, { "start_pos": 987, "end_pos": 989 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7K2P7-1", "uniprot_ac": "A0A9J7K2P7", "uniprot_id": "A0A9J7K2P7_CRIGR", "mass": { "chemical_mass": 84678.0, "monoisotopic_mass": 84678.0 }, "refseq": { "ac": "XP_035295197", "name": "PGC-1 and ERR-induced regulator in muscle protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295197" }, "gene_names": [ { "name": "Perm1", "type": "recommended", "evidence": [ { "id": "A0A9J7K2P7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2P7" } ] }, { "name": "Perm1", "type": "synonym", "evidence": [ { "id": "XP_035295197", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295197" } ] } ], "protein_names": [ { "name": "PGC-1 and ERR-induced regulator in muscle protein 1", "type": "synonym", "evidence": [ { "id": "XP_035295197", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295197" }, { "id": "A0A9J7K2P7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2P7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035295197", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295197" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K2P7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2P7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Perm1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2P7", "locus": {} } ], "crossref": [ { "id": "A0A9J7K2P7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K2P7", "database": "AlphaFoldDB", "categories": [] }, { "id": "100773289", "url": "https://www.ncbi.nlm.nih.gov/gene/100773289", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR043442", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043442", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100773289", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773289", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K2P7", "url": "https://www.orthodb.org/?gene=A0A9J7K2P7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47282", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47282", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47282:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47282:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF28384", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28384", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035295197", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295197", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K2P7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2P7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K2P7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2P7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDNFQYSVQLSDREWAEFSATVDECGLLQAGLASGDELLSSDIGSDIGSDSGSSPPGPPPLFTGQLAPQGRGQQGCELEDVAAQQLVSRSQCEPVLALDASHQVANTSTQSEALLFLGSDSVCPTQALSFPGSATLRDKMQRLLQGPAPSSPGEPSHSPDPGHSAMPQSAPDNIDTPLRNPGRKKRRSVGTKGGKCSGSLGSAAVQMSSPQIMETKPKEVLMSGTLMVKDQQDKPQSDYAGASEHGSSIPGQMARQKSGLDLSTPVIITEEDTDQIRKIPRAVPHMISKPVQEAHPDVSMATPNVSLSTHASIPQPYMALSKPASKPQSDTDLFPHVSTSDMTLPTLAFKCQPYTNQSTPVSDHDMALSTSASMSKLDKAEFAPDCIPGLHEDLSAAGSEIKPEVYPSMPAPVVMLCTDLPHSVSKTESEESVSIPAMSSLSPISQAEAAMVDIDMTVSPGRYSEKPIGQISAGSSGYSSGEPCPGPVQVPKKKKVRFSMAIPSHEESGSGEPTGPPFLTPDWPPALRTASGSRGGSAAWDAVAVGPRLPQPRILKHLPPPVSSVSAEPEPGSCYAVTLPEAYEFFFCDTIEEEDEDVENEAAASQALDEVQWPDTCEFFFRDSRVQRSSSQRGHSLVSSPRAEAVAPVPPGDLVPISIPEVYEHFFTEEGFGNSQPPSTHIQPQISELFREVGSEAYSKPVPATAEHLSLAIREAGELRSPLTSFTFSQNDMCLVFVAFATWAVRTSDLHAPDAWKTVLLANIGTISAIRYFRRQVGRGHNGRPRPSCNSSPSC", "length": 795, "header": "tr|A0A9J7K2P7-1|A0A9J7K2P7_CRIGR Isoform 1 of PGC-1 and ERR-induced regulator in muscle protein 1 OS=Cricetulus griseus OX=10029 GN=Perm1 PE=4 SV=1 CANONICAL=A0A9J7K2P7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K2P7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2P7/entry", "sequence": { "sequence": "MDNFQYSVQLSDREWAEFSATVDECGLLQAGLASGDELLSSDIGSDIGSDSGSSPPGPPPLFTGQLAPQGRGQQGCELEDVAAQQLVSRSQCEPVLALDASHQVANTSTQSEALLFLGSDSVCPTQALSFPGSATLRDKMQRLLQGPAPSSPGEPSHSPDPGHSAMPQSAPDNIDTPLRNPGRKKRRSVGTKGGKCSGSLGSAAVQMSSPQIMETKPKEVLMSGTLMVKDQQDKPQSDYAGASEHGSSIPGQMARQKSGLDLSTPVIITEEDTDQIRKIPRAVPHMISKPVQEAHPDVSMATPNVSLSTHASIPQPYMALSKPASKPQSDTDLFPHVSTSDMTLPTLAFKCQPYTNQSTPVSDHDMALSTSASMSKLDKAEFAPDCIPGLHEDLSAAGSEIKPEVYPSMPAPVVMLCTDLPHSVSKTESEESVSIPAMSSLSPISQAEAAMVDIDMTVSPGRYSEKPIGQISAGSSGYSSGEPCPGPVQVPKKKKVRFSMAIPSHEESGSGEPTGPPFLTPDWPPALRTASGSRGGSAAWDAVAVGPRLPQPRILKHLPPPVSSVSAEPEPGSCYAVTLPEAYEFFFCDTIEEEDEDVENEAAASQALDEVQWPDTCEFFFRDSRVQRSSSQRGHSLVSSPRAEAVAPVPPGDLVPISIPEVYEHFFTEEGFGNSQPPSTHIQPQISELFREVGSEAYSKPVPATAEHLSLAIREAGELRSPLTSFTFSQNDMCLVFVAFATWAVRTSDLHAPDAWKTVLLANIGTISAIRYFRRQVGRGHNGRPRPSCNSSPSC", "length": 795, "header": "tr|A0A9J7K2P7-1|A0A9J7K2P7_CRIGR Isoform 1 of PGC-1 and ERR-induced regulator in muscle protein 1 OS=Cricetulus griseus OX=10029 GN=Perm1 PE=4 SV=1 CANONICAL=A0A9J7K2P7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"XP_035297292", "name": "LOW QUALITY PROTEIN: 40S ribosomal protein S12-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035297292" }, "gene_names": [ { "name": "LOC100770429", "type": "recommended", "evidence": [ { "id": "A0A9J7K2R4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2R4" } ] }, { "name": "LOC100770429", "type": "synonym", "evidence": [ { "id": "XP_035297292", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035297292" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: 40S ribosomal protein S12-like", "type": "synonym", "evidence": [ { "id": "XP_035297292", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035297292" }, { "id": "A0A9J7K2R4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2R4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel internal stop codons :: corrected 2 genomic stop codon ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035297292", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035297292" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K2R4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2R4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100770429", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2R4", "locus": {} } ], "crossref": [ { "id": "100770429", "url": "https://www.ncbi.nlm.nih.gov/gene/100770429", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004038", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004038", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029064", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029064", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100770429", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770429", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K2R4", "url": "https://www.orthodb.org/?gene=A0A9J7K2R4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11843", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11843", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01248", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01248", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035297292", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035297292", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K2R4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2R4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K2R4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2R4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEAGIVAGGVMDVNTALQEVLKTALIHNVITYGICIAAKAFHKCLAHLCVLASNCNELAEVLCAKHQINLIKTLEEXVGFXTIDXEGELCKMVGCSWVVVKDYGKELQAKDVIEEYFKYKK", "length": 122, "header": "tr|A0A9J7K2R4-1|A0A9J7K2R4_CRIGR Isoform 1 of LOW QUALITY PROTEIN: 40S ribosomal protein S12-like OS=Cricetulus griseus OX=10029 GN=LOC100770429 PE=4 SV=1 CANONICAL=A0A9J7K2R4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K2R4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2R4/entry", "sequence": { "sequence": "MAEAGIVAGGVMDVNTALQEVLKTALIHNVITYGICIAAKAFHKCLAHLCVLASNCNELAEVLCAKHQINLIKTLEEXVGFXTIDXEGELCKMVGCSWVVVKDYGKELQAKDVIEEYFKYKK", "length": 122, "header": "tr|A0A9J7K2R4-1|A0A9J7K2R4_CRIGR Isoform 1 of LOW QUALITY PROTEIN: 40S ribosomal protein S12-like OS=Cricetulus griseus OX=10029 GN=LOC100770429 PE=4 SV=1 CANONICAL=A0A9J7K2R4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 11% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027255064", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255064" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K300", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K300" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Sh3d21", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K300", "locus": {} } ], "crossref": [ { "id": "cd12142", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12142", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100764248", "url": "https://www.ncbi.nlm.nih.gov/gene/100764248", "database": "GeneID", "categories": [ "Genome 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"Protein" ] }, { "id": "A0A9J7K300-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K300-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVQSELQLQSRAGRRAEASNWGDCGSYKGGLGNTDMPSVIPNPPRPPKLSNLTYDSPPDYLRTGEHLAKESFPQFQATPSLVGGEPVSCPETCRVLFDYHPEAPDELALHKGDLVKVLRKTTEDKGWWEGECQGRRGLFPDNFVLPPPPIRKLVPRKIITRDSAPVKELKKPMPKTLLSTVKRPAAAASALSKAKTSSTPSGDSQKRPSRDSGLNGSFLNGRPRQLGRKQTRIQASQQYSVFRQEDEQRSPGKAPSTNKTTTPEKTRIPVKTLGPQKILAPNKASTPENPVPEKALDSAKIRTAENTTADKAVSTEVDEAPALEAPTKDETVDPKMALHVDSAPVLVKILSPENMLFEGESFRHNTQNQHLPQEETTQASESLASSNDIEVPGEYSQQSTSECCYSRRDNHVDTSPAHSRANNESAVGEATFLEELPAKDETTLKETLAKENLPSEGEGPSKQVPPKEPVPSPQVPHAIKQIPDPEEAPTLHPAVPPTSSQSKNDSEDVASLKEEVGSLKSLLERLEWKLGEKMSDVLEELKAEKEELKAEKEKLQSLEVQFMEKTQKLFKHAQTQTETHTE", "length": 582, "header": "tr|A0A9J7K300-1|A0A9J7K300_CRIGR Isoform 1 of SH3 domain-containing protein 21 isoform X1 OS=Cricetulus griseus OX=10029 GN=Sh3d21 PE=4 SV=1 CANONICAL=A0A9J7K300-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GPE9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GPE9/entry", "sequence": { "sequence": "MVQSELQLQSRAGRRAEASNWGDCGSYKGGLGNTDMPSVIPNPPRPPKLSNLTYDSPPDYLRTVSCPETCRVLFDYHPEAPDELALHKGDLVKVLRKTTEDKGWWEGECQGRRGLFPDNFVLPPPPIRKLVPRKIITRDSAPVKELKKPMPKTLLSTVKRPAAAASALSKAKTSSTPSGDSQKRPSRDSGLNGSFLNGRPRQLGRKQTRIQASQQYSVFRQEDEQRSPGKAPSTNKTTTPEKTRIPVKTLGPQKILAPNKASTPENPVPEKALDSAKIRTAENTTADKAVSTEVDEAPALEAPTKDETVDPKMALHVDSAPVLVKILSPENMLFEGESFRHNTQNQHLPQEETTQASESLASSNDIEVPGEYSQQSTSECCYSRRDNHVDTSPAHSRANNESAVGEATFLEELPAKDETTLKETLAKENLPSEGEGPSKQVPPKEPVPSPQVPHAIKQIPDPEEAPTLHPAVPPTSSQSKNDSEDVASLKEEVGSLKSLLERLEWKLGEKMSDVLEELKAEKEELKAEKEKLQSLEVQFMEKTQKLFKHAQTQTETHTE", "length": 559, "header": "tr|A0A9J7GPE9-1|A0A9J7GPE9_CRIGR Computationally mapped isoform of SH3 domain-containing protein 21 isoform X2 OS=Cricetulus griseus OX=10029 GN=Sh3d21 PE=4 SV=1 CANONICAL=A0A9J7K300-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K300-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K300/entry", "sequence": { "sequence": "MVQSELQLQSRAGRRAEASNWGDCGSYKGGLGNTDMPSVIPNPPRPPKLSNLTYDSPPDYLRTGEHLAKESFPQFQATPSLVGGEPVSCPETCRVLFDYHPEAPDELALHKGDLVKVLRKTTEDKGWWEGECQGRRGLFPDNFVLPPPPIRKLVPRKIITRDSAPVKELKKPMPKTLLSTVKRPAAAASALSKAKTSSTPSGDSQKRPSRDSGLNGSFLNGRPRQLGRKQTRIQASQQYSVFRQEDEQRSPGKAPSTNKTTTPEKTRIPVKTLGPQKILAPNKASTPENPVPEKALDSAKIRTAENTTADKAVSTEVDEAPALEAPTKDETVDPKMALHVDSAPVLVKILSPENMLFEGESFRHNTQNQHLPQEETTQASESLASSNDIEVPGEYSQQSTSECCYSRRDNHVDTSPAHSRANNESAVGEATFLEELPAKDETTLKETLAKENLPSEGEGPSKQVPPKEPVPSPQVPHAIKQIPDPEEAPTLHPAVPPTSSQSKNDSEDVASLKEEVGSLKSLLERLEWKLGEKMSDVLEELKAEKEELKAEKEKLQSLEVQFMEKTQKLFKHAQTQTETHTE", "length": 582, "header": "tr|A0A9J7K300-1|A0A9J7K300_CRIGR Isoform 1 of SH3 domain-containing protein 21 isoform X1 OS=Cricetulus griseus OX=10029 GN=Sh3d21 PE=4 SV=1 CANONICAL=A0A9J7K300-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 498, "start_aa": "Thr", "end_pos": 498, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr498", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 78, "start_aa": "Thr", "end_pos": 78, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr78", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K300", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K300" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K300", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K300" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100764248", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764248", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "actin filament organization", "id": "GO:0007015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007015", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K300", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K300" } ], "pmid": "" }, { "name": "cell migration", "id": "GO:0016477", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016477", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K300", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K300" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 215, "end_pos": 217, "annotation": "n_glycosylation_sequon" }, { "start_pos": 258, "end_pos": 260, "annotation": "n_glycosylation_sequon" }, { "start_pos": 306, "end_pos": 308, "annotation": "n_glycosylation_sequon" }, { "start_pos": 423, "end_pos": 425, "annotation": "n_glycosylation_sequon" }, { "start_pos": 504, "end_pos": 506, "annotation": "n_glycosylation_sequon" }, { "start_pos": 51, "end_pos": 53, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7K300", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K300" }, { "id": "PS50002", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50002" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SH3", "eco_id": "ECO_0000259", "start_pos": 88, "end_pos": 149, "start_aa": "Ser", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 78, 498 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 215, "end_pos": 217 }, { "start_pos": 258, "end_pos": 260 }, { "start_pos": 306, "end_pos": 308 }, { "start_pos": 423, "end_pos": 425 }, { "start_pos": 504, "end_pos": 506 }, { "start_pos": 51, "end_pos": 53 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7K308-1", "uniprot_ac": "A0A9J7K308", "uniprot_id": "A0A9J7K308_CRIGR", "mass": { "chemical_mass": 99211.0, "monoisotopic_mass": 99211.0 }, "refseq": { "ac": "XP_035297600", "name": "probable G-protein coupled receptor 158 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035297600" }, "gene_names": [ { "name": "Gpr158", "type": "recommended", "evidence": [ { "id": "A0A9J7K308", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K308" } ] }, { "name": "Gpr158", "type": "synonym", "evidence": [ { "id": "XP_035297600", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035297600" } ] } ], "protein_names": [ { "name": "Probable G-protein coupled receptor 158 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7K308", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K308/entry#names_and_taxonomy" } ] }, { "name": "probable G-protein coupled receptor 158 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035297600", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035297600" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 2% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035297600", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035297600" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K308", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K308" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Gpr158", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K308", "locus": {} } ], "crossref": [ { "id": "A0A9J7K308", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K308", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15293", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15293", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100757301", "url": "https://www.ncbi.nlm.nih.gov/gene/100757301", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR017978", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017978", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043458", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043458", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100757301", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757301", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K308", "url": "https://www.orthodb.org/?gene=A0A9J7K308", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR32546", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32546", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32546:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32546:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00003", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00003", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035297600", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035297600", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K308", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K308", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K308-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K308-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPWDDQSTQDGLSALCQCMPIKGLGFVLGAYQCICKAGFYHPRVFSVNNFQRRGPDHHFSGSTKDGPEEAHVCLPCREGCSFCADDRPCFVQEDKYLRLAIISFQILCMLLDFVSMMVVYHFRKAKSIRASGLILLETILFGSLLLYFPVVILYFEPSTFRCILLRWVRLLGFATVYGTVTLKLHRVLKVFLSRTAQRIPYMTGGRVMRMLGVILLVVFWFLVGWTSSMCQNLEKDISLVGQGQTSDNLTFNMCLIDRWDYMTAVAEFLFLLWGIYLCYAVRTVPSAFHEPRYMAVAVHNELIITAIFHTIRFVMASKLQSDWMLMLYFAHTHLTVTVTIGLLLIPKFSHSSNNPRDDIATEAYEDELDMGRSGSYLNSSINSAWSEHSLDPEDIRDELKKLYAQLEIYKRKKMITNNPHLQKKRCSKKGLGRSIMRRITEIPETVSRQCSKEDKEGTDHNAAKGTGLVRKNPADSSGNTGRPKEESLKNRVFSLKKSHSTYDHVRDQTEESSSLPTESQEEEATENSTLDSLSSKKLTQKLKEDSEAESTESVPLVCKSASAHNLSSEKKPGHPRTSMLQKSLSVIASAKEKTLGLAGKTQTSCMEDRSKSQKPLPKDKESNRKFSNPDNTDRKHSGLPNSNLLEELRKPQKSGIMKQQRSNLPTANSDLNPSTTQIKDNFDIGEVCPWEVYDLTPGPVPSEPKAQKHVSIAASEVEQNPASSSKEKSHHKPKAAEDLQQLNHKSVDKTEVCPWESQGQSLLEDENPLLSKTPVLPGKAREENGSQLYTTNTCAGQHEELPPKAVASKVENENLNLMGDQEKQTSSGGIIPGSCNSSNNSHQPLTSRAEVCPWEFETLDQPNAERSVALPASSALSANKIAGPQK", "length": 887, "header": "tr|A0A9J7K308-1|A0A9J7K308_CRIGR Isoform 1 of Probable G-protein coupled receptor 158 isoform X2 OS=Cricetulus griseus OX=10029 GN=Gpr158 PE=3 SV=1 CANONICAL=A0A9J7K308-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K308-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K308/entry", "sequence": { "sequence": "MEPWDDQSTQDGLSALCQCMPIKGLGFVLGAYQCICKAGFYHPRVFSVNNFQRRGPDHHFSGSTKDGPEEAHVCLPCREGCSFCADDRPCFVQEDKYLRLAIISFQILCMLLDFVSMMVVYHFRKAKSIRASGLILLETILFGSLLLYFPVVILYFEPSTFRCILLRWVRLLGFATVYGTVTLKLHRVLKVFLSRTAQRIPYMTGGRVMRMLGVILLVVFWFLVGWTSSMCQNLEKDISLVGQGQTSDNLTFNMCLIDRWDYMTAVAEFLFLLWGIYLCYAVRTVPSAFHEPRYMAVAVHNELIITAIFHTIRFVMASKLQSDWMLMLYFAHTHLTVTVTIGLLLIPKFSHSSNNPRDDIATEAYEDELDMGRSGSYLNSSINSAWSEHSLDPEDIRDELKKLYAQLEIYKRKKMITNNPHLQKKRCSKKGLGRSIMRRITEIPETVSRQCSKEDKEGTDHNAAKGTGLVRKNPADSSGNTGRPKEESLKNRVFSLKKSHSTYDHVRDQTEESSSLPTESQEEEATENSTLDSLSSKKLTQKLKEDSEAESTESVPLVCKSASAHNLSSEKKPGHPRTSMLQKSLSVIASAKEKTLGLAGKTQTSCMEDRSKSQKPLPKDKESNRKFSNPDNTDRKHSGLPNSNLLEELRKPQKSGIMKQQRSNLPTANSDLNPSTTQIKDNFDIGEVCPWEVYDLTPGPVPSEPKAQKHVSIAASEVEQNPASSSKEKSHHKPKAAEDLQQLNHKSVDKTEVCPWESQGQSLLEDENPLLSKTPVLPGKAREENGSQLYTTNTCAGQHEELPPKAVASKVENENLNLMGDQEKQTSSGGIIPGSCNSSNNSHQPLTSRAEVCPWEFETLDQPNAERSVALPASSALSANKIAGPQK", "length": 887, "header": "tr|A0A9J7K308-1|A0A9J7K308_CRIGR Isoform 1 of Probable G-protein coupled receptor 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This record is derived from a genomic sequence (NW_003617188.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027241690", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027241690" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K319", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K319" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH10orf82", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K319", "locus": {} } ], "crossref": [ { "id": "A0A9J7K319", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K319", "database": "AlphaFoldDB", "categories": [] }, { "id": "100758426", "url": "https://www.ncbi.nlm.nih.gov/gene/100758426", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR043246", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043246", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055215", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055215", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100758426", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758426", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PGWAGFL", "url": "https://omabrowser.org/oma/group/PGWAGFL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7K319", "url": "https://www.orthodb.org/?gene=A0A9J7K319", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47301", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47301", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47301:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47301:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF22573", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22573", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027241690", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027241690", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K319", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K319", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K319-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K319-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPPETFMRKLPITPGYGGFIPWLSCQGPFSEDDMNHCVKAFQEKTQRYKEQQQELNCSVNSIPALKPICSENTVLWKLHEYAKKYHPLTLECKNVKKPLKEPPIPGWAGYLPRARVTEFGCATRYTIMAKKCYEDFLDLMEQAKRAQQKPYEQIYGVSSEQPPQPSPKVSQLQGLPPEYPESSVPGQALPSEDSRAPGTCGCAQWSSLSCSRNAYERYPPQEMQFAVGQSLTPSQEI", "length": 238, "header": "tr|A0A9J7K319-1|A0A9J7K319_CRIGR Isoform 1 of Uncharacterized protein C10orf82 homolog OS=Cricetulus griseus OX=10029 GN=CUNH10orf82 PE=4 SV=1 CANONICAL=A0A9J7K319-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K319-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K319/entry", "sequence": { "sequence": "MEPPETFMRKLPITPGYGGFIPWLSCQGPFSEDDMNHCVKAFQEKTQRYKEQQQELNCSVNSIPALKPICSENTVLWKLHEYAKKYHPLTLECKNVKKPLKEPPIPGWAGYLPRARVTEFGCATRYTIMAKKCYEDFLDLMEQAKRAQQKPYEQIYGVSSEQPPQPSPKVSQLQGLPPEYPESSVPGQALPSEDSRAPGTCGCAQWSSLSCSRNAYERYPPQEMQFAVGQSLTPSQEI", "length": 238, "header": "tr|A0A9J7K319-1|A0A9J7K319_CRIGR Isoform 1 of Uncharacterized protein C10orf82 homolog OS=Cricetulus griseus OX=10029 GN=CUNH10orf82 PE=4 SV=1 CANONICAL=A0A9J7K319-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K319", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K319" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K319", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K319" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100758426", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758426", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A6QPC0-1", "protein_name": "Sperm-associated microtubule inner protein 5", "gene_name": "SPMIP5", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MESSKTFMRQMPITPGYSGFVPYLSCQGTSSEDNMANCLKIFQENTRRCKDQLEEFHCSVATAPKLKPVRSEGTVLRTLHQYYRQYHPLSLECKNIKKPLHEPPIPGWAGYLPRARVTELGCSTRYTVMARNCYRDFLDLMERAKQAHLKPYEKIYGVKSTPPPPTPPPKVLLHEGLLPKYPDFSIPGARCPTLSRALMEDPRPLMTCGCPQRPSVWCSGKIYLEPLSGGKDMEG", "length": 235 }, "evidence": [ { "id": "A0A9J7K319", "url": "https://omabrowser.org/oma/group/A0A9J7K319/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D4A2P4-1", "protein_name": "Sperm microtubule inner protein 5", "gene_name": "Spmip5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEPPKTFMRKLPITPGYCGFIPWLSCQESPVEDRMNSCVKAFQERTQRYKEEQQTLNCSVANTRPLKPICSEDTVLWVLHEYAKKYHPLTLECKNQKKPLREPPIPGWAGYLPRAKVTEFGCATRYTLMARKCYEDFLGLVEQAKRAQLKPYEKTYSVSSAQPLHPSPKVLQLQGLPPPYPEHFVPGQTLPSENFQALRPCGCAHWSNLSCGEPTSWAKKFAQS", "length": 224 }, "evidence": [ { "id": "A0A9J7K319", "url": "https://omabrowser.org/oma/group/A0A9J7K319/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8WW14-1", "protein_name": "Sperm-associated microtubule inner protein 5", "gene_name": "SPMIP5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEPSKTFMRNLPITPGYSGFVPFLSCQGMSKEDDMNHCVKTFQEKTQRYKEQLRELCCAVATAPKLKPVNSEETVLQALHQYNLQYHPLILECKYVKKPLQEPPIPGWAGYLPRAKVTEFGCGTRYTVMAKNCYKDFLEITERAKKAHLKPYEEIYGVSSTKTSAPSPKVLQHEELLPKYPDFSIPDGSCPALGRPLREDPKTPLTCGCAQRPSIPCSGKMYLEPLSSAKYAEG", "length": 234 }, "evidence": [ { "id": "A0A9J7K319", "url": "https://omabrowser.org/oma/group/A0A9J7K319/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9CQT6-1", "protein_name": "Sperm-associated microtubule inner protein 5", "gene_name": "Spmip5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESPKTFMRKLPITPGYCGFIPWLSCQESSSEDRMNPCVKAFQERTQRYKEDQQGLNCSVANTPPLKPICSEDTVLWVLHEYAKKYHPLTLECKNEKKPLQEPPIPGWAGYLPRARVTEFGYATRYTIMAKKCYKDFLDLVEQAKRAQLKPYEQTYDVRAAQPLSPSSKILQLQGLSPAFPEFSGPGQTPPSEDPQAPRPCGCAQWSSQSCSRNVYGEPPSLAKAFAES", "length": 229 }, "evidence": [ { "id": "A0A9J7K319", "url": "https://omabrowser.org/oma/group/A0A9J7K319/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 57, "end_pos": 59, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7K319", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K319" }, { "id": "PF22573", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22573" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Sperm-associated microtubule inner protein 5", "eco_id": "ECO_0000259", "start_pos": 92, "end_pos": 153, "start_aa": "Glu", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 57, "end_pos": 59 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7K331-1", "uniprot_ac": "A0A9J7K331", "uniprot_id": "A0A9J7K331_CRIGR", "mass": { "chemical_mass": 48585.0, "monoisotopic_mass": 48585.0 }, "refseq": { "ac": "XP_027289131", "name": "divergent protein kinase domain 2B", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289131" }, "gene_names": [ { "name": "Dipk2b", "type": "recommended", "evidence": [ { "id": "A0A9J7K331", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K331" } ] }, { "name": "Dipk2b", "type": "synonym", "evidence": [ { "id": "XP_027289131", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289131" } ] } ], "protein_names": [ { "name": "Divergent protein kinase domain 2B", "type": "synonym", "evidence": [ { "id": "A0A9J7K331", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K331/entry#names_and_taxonomy" } ] }, { "name": "divergent protein kinase domain 2B", "type": "synonym", "evidence": [ { "id": "XP_027289131", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289131" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 2% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027289131", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289131" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K331", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K331" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Dipk2b", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K331", "locus": {} } ], "crossref": [ { "id": "A0A9J7K331", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K331", "database": "AlphaFoldDB", "categories": [] }, { "id": "100755653", "url": "https://www.ncbi.nlm.nih.gov/gene/100755653", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR020519", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020519", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022049", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022049", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755653", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755653", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K331", "url": "https://www.orthodb.org/?gene=A0A9J7K331", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR32073", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32073", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32073:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32073:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12260", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12260", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027289131", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289131", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K331", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K331", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K331-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K331-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEALAGAQTAAFHQRWPARLLLWVSALSCSFSSPASLPPSLVPRVRSSYTLGRTFLGLDKCNACIGTSICKKFFKEEIRFDNSMASHLGLPPYDLPSYAANYSDDSKTWRPVEVSRLVSKYQSEISDRRICASASAPETCSIERILRKTGRFQKWLQAKRLTPDLVQGLPSPFLRCPSQRLLDRVVRRYAEVADAGSIFMDHFTDRDKLRLLYTLAVNAHPIILQIFPGAEGWPLPKYLGSCGRFLISTSTRPLQEFYDAPPEQAADLAYQLLGVLESLRSNDLNYFFYFTHVDADMFGIFDNGHLFIRDASALGVIDKQEGSQADAGTGENEDIFSCLVSGCQVQLSSCDTVPEMQSLVLVCQQLLPQLLQGKFPSPVQEEIDSALSLCSKDSSTDMEVLGATSQLKDILRPLRTCDPRFAYRYPDCKYNDRF", "length": 434, "header": "tr|A0A9J7K331-1|A0A9J7K331_CRIGR Isoform 1 of Divergent protein kinase domain 2B OS=Cricetulus griseus OX=10029 GN=Dipk2b PE=3 SV=1 CANONICAL=A0A9J7K331-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K331-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K331/entry", "sequence": { "sequence": "MEALAGAQTAAFHQRWPARLLLWVSALSCSFSSPASLPPSLVPRVRSSYTLGRTFLGLDKCNACIGTSICKKFFKEEIRFDNSMASHLGLPPYDLPSYAANYSDDSKTWRPVEVSRLVSKYQSEISDRRICASASAPETCSIERILRKTGRFQKWLQAKRLTPDLVQGLPSPFLRCPSQRLLDRVVRRYAEVADAGSIFMDHFTDRDKLRLLYTLAVNAHPIILQIFPGAEGWPLPKYLGSCGRFLISTSTRPLQEFYDAPPEQAADLAYQLLGVLESLRSNDLNYFFYFTHVDADMFGIFDNGHLFIRDASALGVIDKQEGSQADAGTGENEDIFSCLVSGCQVQLSSCDTVPEMQSLVLVCQQLLPQLLQGKFPSPVQEEIDSALSLCSKDSSTDMEVLGATSQLKDILRPLRTCDPRFAYRYPDCKYNDRF", "length": 434, "header": "tr|A0A9J7K331-1|A0A9J7K331_CRIGR Isoform 1 of Divergent protein kinase domain 2B OS=Cricetulus griseus OX=10029 GN=Dipk2b PE=3 SV=1 CANONICAL=A0A9J7K331-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K346", "url": "https://www.orthodb.org/?gene=A0A9J7K346", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23235", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23235", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23235:SF120", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23235:SF120", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23235:SF176", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23235:SF176", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24377", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24377", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13465", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13465", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035307154", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307154", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K346", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K346", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K346-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K346-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KD78", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD78", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KD78-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD78-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KEB2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEB2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KEB2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEB2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEEFHQTQVLSGHRTWTLSENAVTYDDVNVTFTREEWTLLDPSQKNLYKDVMLETYRNLTAIGYSWEDHNIEEHCQNFRRHGRHESHTEEKPCEYTQCDKALPSHSHLQRHEIIPRGRKRNECNQCGRTFANHSYLRIHKRTHTGEKPCECNECGKAFAHLSSLQRHKRTHSGEKPYRCNQCDKAFSQPTSLQIHIRTHTGEKPYVCYQCGKAFSQHNILRVHKRTHTGEKPYKCNECGEGFARHSHLQKHERLHTGEKFYKCNECGEAFARHNYLQRHKRIHTGEKPYECTHCGKAFSQNSYLRVHERTHTGEKPYECSQCGKAFARNASLRIHKKIHSGEKPYKCNQCDKAFSEHSYLRIHIRRHTGEKPYRCTQCDKTFAHHRSLQIHKRTHTEGNPMTASNVVKPLHVTVVFEVMTKNHTGENP", "length": 428, "header": "tr|A0A9J7K346-1|A0A9J7K346_CRIGR Isoform 1 of Zinc finger protein 431 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100774954 PE=3 SV=1 CANONICAL=A0A9J7K346-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K346-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K346/entry", "sequence": { "sequence": "MEEFHQTQVLSGHRTWTLSENAVTYDDVNVTFTREEWTLLDPSQKNLYKDVMLETYRNLTAIGYSWEDHNIEEHCQNFRRHGRHESHTEEKPCEYTQCDKALPSHSHLQRHEIIPRGRKRNECNQCGRTFANHSYLRIHKRTHTGEKPCECNECGKAFAHLSSLQRHKRTHSGEKPYRCNQCDKAFSQPTSLQIHIRTHTGEKPYVCYQCGKAFSQHNILRVHKRTHTGEKPYKCNECGEGFARHSHLQKHERLHTGEKFYKCNECGEAFARHNYLQRHKRIHTGEKPYECTHCGKAFSQNSYLRVHERTHTGEKPYECSQCGKAFARNASLRIHKKIHSGEKPYKCNQCDKAFSEHSYLRIHIRRHTGEKPYRCTQCDKTFAHHRSLQIHKRTHTEGNPMTASNVVKPLHVTVVFEVMTKNHTGENP", "length": 428, "header": "tr|A0A9J7K346-1|A0A9J7K346_CRIGR Isoform 1 of Zinc finger protein 431 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100774954 PE=3 SV=1 CANONICAL=A0A9J7K346-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KD78-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD78/entry", "sequence": { "sequence": "MLETYRNLTAIGYSWEDHNIEEHCQNFRRHGRHESHTEEKPCEYTQCDKALPSHSHLQRHEIIPRGRKRNECNQCGRTFANHSYLRIHKRTHTGEKPCECNECGKAFAHLSSLQRHKRTHSGEKPYRCNQCDKAFSQPTSLQIHIRTHTGEKPYVCYQCGKAFSQHNILRVHKRTHTGEKPYKCNECGEGFARHSHLQKHERLHTGEKFYKCNECGEAFARHNYLQRHKRIHTGEKPYECTHCGKAFSQNSYLRVHERTHTGEKPYECSQCGKAFARNASLRIHKKIHSGEKPYKCNQCDKAFSEHSYLRIHIRRHTGEKPYRCTQCDKTFAHHRSLQIHKRTHTEGNPMTASNVVKPLHVTVVFEVMTKNHTGENP", "length": 377, "header": "tr|A0A9J7KD78-1|A0A9J7KD78_CRIGR Computationally mapped isoform of Zinc finger protein 431 isoform X4 OS=Cricetulus griseus OX=10029 GN=LOC100774954 PE=3 SV=1 CANONICAL=A0A9J7K346-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KEB2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEB2/entry", "sequence": { "sequence": "MNAVTYDDVNVTFTREEWTLLDPSQKNLYKDVMLETYRNLTAIGYSWEDHNIEEHCQNFRRHGRHESHTEEKPCEYTQCDKALPSHSHLQRHEIIPRGRKRNECNQCGRTFANHSYLRIHKRTHTGEKPCECNECGKAFAHLSSLQRHKRTHSGEKPYRCNQCDKAFSQPTSLQIHIRTHTGEKPYVCYQCGKAFSQHNILRVHKRTHTGEKPYKCNECGEGFARHSHLQKHERLHTGEKFYKCNECGEAFARHNYLQRHKRIHTGEKPYECTHCGKAFSQNSYLRVHERTHTGEKPYECSQCGKAFARNASLRIHKKIHSGEKPYKCNQCDKAFSEHSYLRIHIRRHTGEKPYRCTQCDKTFAHHRSLQIHKRTHTEGNPMTASNVVKPLHVTVVFEVMTKNHTGENP", "length": 409, "header": "tr|A0A9J7KEB2-1|A0A9J7KEB2_CRIGR Computationally mapped isoform of Zinc finger protein 431 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100774954 PE=3 SV=1 CANONICAL=A0A9J7K346-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K346", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K346" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K346", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K346" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100774954", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774954", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K346", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K346" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K346", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K346" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K346", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K346" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K346", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K346" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K346", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K346" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K346", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K346" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K346", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K346" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 132, "end_pos": 134, "annotation": "n_glycosylation_sequon" }, { "start_pos": 29, "end_pos": 31, "annotation": "n_glycosylation_sequon" }, { "start_pos": 329, "end_pos": 331, "annotation": "n_glycosylation_sequon" }, { "start_pos": 422, "end_pos": 424, "annotation": "n_glycosylation_sequon" }, { "start_pos": 58, "end_pos": 60, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7K346", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K346" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 121, "end_pos": 148, "start_aa": "Asn", "end_aa": "Pro", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7K346", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K346" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 23, "end_pos": 94, "start_aa": "Val", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 132, "end_pos": 134 }, { "start_pos": 29, "end_pos": 31 }, { "start_pos": 329, "end_pos": 331 }, { "start_pos": 422, "end_pos": 424 }, { "start_pos": 58, "end_pos": 60 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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} ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7K352-1", "uniprot_ac": "A0A9J7K352", "uniprot_id": "A0A9J7K352_CRIGR", "mass": { "chemical_mass": 51831.0, "monoisotopic_mass": 51831.0 }, "refseq": { "ac": "XP_027289212", "name": "cancer/testis antigen 55-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289212" }, "gene_names": [ { "name": "LOC113837782", "type": "recommended", "evidence": [ { "id": "A0A9J7K352", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K352" } ] }, { "name": "LOC113837782", "type": "synonym", "evidence": [ { "id": "XP_027289212", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289212" } ] } ], "protein_names": [ { "name": "Cancer/testis antigen 55-like", "type": "synonym", "evidence": [ { "id": "A0A9J7K352", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K352/entry#names_and_taxonomy" } ] }, { "name": "cancer/testis antigen 55-like", "type": "synonym", "evidence": [ { "id": "XP_027289212", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289212" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 44% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027289212.1. 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"MSLNTSSNATTGDTQRLKNVSLDAKQMLKNEMESDITADLRKKLHRAKKEKLEMTTKHNAELSSYESQIARLRSEVEKGEALRQRLEYDLAVVRKESGMGRRMVEERLDEALRTQEKLCAQNLELQEKASEIEKTFQTSQEKWKEECRRFEHDLEERDNIIQNCNREYESLMQEKNKLQKTLQM", "length": 184, "header": "tr|A0A9J7K362-1|A0A9J7K4M2_CRIGR Computationally mapped isoform of Coiled-coil domain-containing protein 171 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100756343 PE=4 SV=1 CANONICAL=A0A9J7K4M2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K4M2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4M2/entry", "sequence": { "sequence": "MSLNTSSNATTGDTQRLKNVSLDAKQMLKNEMESDITADLRKKLHRAKKEKLEMTTKHNAELSSYESQIARLRSEVEKGEALRQRLEYDLAVVRKESGMGRRMVEERLDEALRTQEKLCAQNLELQEKASEIEKTFQTSQEKWKEECRRFEHDLEERDNIIQNCNREYESLMQEKNKLQKTLQEALEKRQQEKNEMESHVRETALEEFRLQAEQWEAERRELQLIVQEQDSAVQNMQKKVEQLEAEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEIIKNEFKEVESAYEREKINAQESFTKLNLLEREYFSKNKKVNEEIEEQKKVITDLSKRLQYNEKSFSELQEELVMAKKHQAFLVETCENNVKELESILDSFTVSAQWTSGIHKDKDKLPSFSVVLETLRRTLTDYQNKLEDASNELSNINDAKEKTSNELDSTKQKIESHVKRIKELQDKLTEVHKEVSHLRTKCADREALIGTLKVELQNVLHCWEKEKARAAQCESELQNLSQAFHKDSEEKLTFLHTLYQHLVAGCVLIKQPEGMLDKFSWSELCAVLQENVDALIADLNRANEKMSHLEYICKNKSDTMRELQQTQEDTLSKVAEQIKAQESCWHKQKKELEFQYSELLLEVQRRAQKFQEIAEKNMEKLNRIENSHEQLVLENSHFKSALAKTQREQTCLLAACALMAGALYPLYSRSCALSTQRDFLQEQVNGLELFKLEIRTLAQALAAVDEKKQEEAKPKKKAFKGLIRVFRKGAIAILAANRLKILGQSCASLFTWIESCKEGIGMLVCTGEPKDKHKFPKHQREQLRCVQALTWFTSSDLLAAIISSMTELQEVISKTDPNSRICGHLLIGATKSSFAKLMDKISLAMESIPLHSSRSITYVEKDSLVQRLARGLHKVNTLALKYGLRSHMPIMKSTASLQKQIFGFTQRLHAAEVERRSLRLEVTEYKRTLNEMKKELDKSQSLQMQLSEFKHSKLITHEKFESACEELNNALLREQQAQMLLNEQAQQLQELNYRLEVHSCEEADKNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEENIHDAESALRMAAKDKECVANHMRTVENMLHKVRDQISLSRTAASRNDFTLQLPKLHLETFAMEGLKGGPEVVACQAMIKSFMDVYQLASARISTLEKEMTSHRNHIETLKSELHTACLRENESLQSTGSRDHSNLSIPSRAALPGDTVVDFLPIQAELDTTYRFLKETFITTAPHSLMSSQSSPVVPASVKRPSQIGL", "length": 1333, "header": "tr|A0A9J7K4M2-1|A0A9J7K4M2_CRIGR Isoform 1 of Coiled-coil domain-containing protein 171 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100756343 PE=4 SV=1 CANONICAL=A0A9J7K4M2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"n_glycosylation_sequon" }, { "start_pos": 640, "end_pos": 642, "annotation": "n_glycosylation_sequon" }, { "start_pos": 8, "end_pos": 10, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1091, "end_pos": 1093 }, { "start_pos": 1256, "end_pos": 1258 }, { "start_pos": 1269, "end_pos": 1271 }, { "start_pos": 19, "end_pos": 21 }, { "start_pos": 4, "end_pos": 6 }, { "start_pos": 564, "end_pos": 566 }, { "start_pos": 640, "end_pos": 642 }, { "start_pos": 8, "end_pos": 10 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7K363-1", "uniprot_ac": "A0A9J7K363", "uniprot_id": "A0A9J7K363_CRIGR", "mass": { "chemical_mass": 28316.0, "monoisotopic_mass": 28316.0 }, "refseq": { "ac": "XP_035307227", "name": "uncharacterized protein C4orf45 homolog", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307227" }, "gene_names": [ { "name": "CUNH4orf45", "type": "recommended", "evidence": [ { "id": "A0A9J7K363", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K363" } ] }, { "name": "CUNH4orf45", "type": "synonym", "evidence": [ { "id": "XP_035307227", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307227" } ] } ], "protein_names": [ { "name": "Uncharacterized protein C4orf45 homolog", "type": "synonym", "evidence": [ { "id": "A0A9J7K363", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K363/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein C4orf45 homolog", "type": "synonym", "evidence": [ { "id": "XP_035307227", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307227" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 44% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035307227", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307227" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K363", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K363" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH4orf45", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K363", "locus": {} } ], "crossref": [ { "id": "A0A9J7K363", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K363", "database": "AlphaFoldDB", "categories": [] }, { "id": "118239519", "url": "https://www.ncbi.nlm.nih.gov/gene/118239519", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027814", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027814", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:118239519", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118239519", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K363", "url": "https://www.orthodb.org/?gene=A0A9J7K363", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR34833", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34833", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34833:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34833:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15123", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15123", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035307227", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307227", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K363", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K363", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K363-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K363-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPKALSSADSPNTMLLMSRAAGLDSNVYHELLPMLTEMKLFVSPNAPLTVGGRPLESAKNTPRHQILSPKEIYYLGGAKVKGEAGPDYIKDHSLKVHQHTAYIGEKRPVREKTGDLRYLCRSAPNRSLPAKYKHQYVCGIGWGIPEFACINKSRWKSGFQAKLEDVAVLAIGKISHRYQNPWQPKPSVLDKLGGYSRGFLAWNMSDFEDAQQRNSKRAILVKQSKSPGTTLTPRLPKLSWKEEKADSREGND", "length": 253, "header": "tr|A0A9J7K363-1|A0A9J7K363_CRIGR Isoform 1 of Uncharacterized protein C4orf45 homolog OS=Cricetulus griseus OX=10029 GN=CUNH4orf45 PE=4 SV=1 CANONICAL=A0A9J7K363-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K363-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K363/entry", "sequence": { "sequence": "MEPKALSSADSPNTMLLMSRAAGLDSNVYHELLPMLTEMKLFVSPNAPLTVGGRPLESAKNTPRHQILSPKEIYYLGGAKVKGEAGPDYIKDHSLKVHQHTAYIGEKRPVREKTGDLRYLCRSAPNRSLPAKYKHQYVCGIGWGIPEFACINKSRWKSGFQAKLEDVAVLAIGKISHRYQNPWQPKPSVLDKLGGYSRGFLAWNMSDFEDAQQRNSKRAILVKQSKSPGTTLTPRLPKLSWKEEKADSREGND", "length": 253, "header": "tr|A0A9J7K363-1|A0A9J7K363_CRIGR Isoform 1 of Uncharacterized protein C4orf45 homolog OS=Cricetulus griseus OX=10029 GN=CUNH4orf45 PE=4 SV=1 CANONICAL=A0A9J7K363-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027289253", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289253" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K365", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K365" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100750913", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K365", "locus": {} } ], "crossref": [ { "id": "A0A9J7K365", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K365", "database": "AlphaFoldDB", "categories": [] }, { "id": "100750913", "url": "https://www.ncbi.nlm.nih.gov/gene/100750913", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR038891", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038891", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100750913", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750913", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K365", "url": "https://www.orthodb.org/?gene=A0A9J7K365", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47315", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47315", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47315:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47315:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_027289253", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289253", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K365", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K365", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K365-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K365-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDLYLSNCIKAAEAAASKAASSSLKSDKDACSTKKHSVIPKIGPSSLLDLPLGAKLPIIPGSTNIFYTTNISEKLYQPSFGFNLNDPYCKLMETTYKSLHDPHLKSYFKRKDILKKLKQGGYITSNNKVICSLKELNKYRQYLTTLKIDFERNYVREQKIIESQVNKLNEERRACDDAAAAEFQQWLLQEGKKPFPNEDQLIKLRHLRMINKELDKLENTSERRNTLQLKEEDRQHWDNVRTKLNLRKQVEEEWQAKEMTLLIKIGEEVKREGKIEEHRRKIREEINRKKQAMLHKRIAYHLQKLQKRDSNEGNLETNISERRKQSERASSITPRKSSVTEKKTSQEHLERKSSTSSIKTSISFQRLFQESRESKPTSKTTKASFDEDRASFYELLETKFSPTDTGRSSFPEEQTFQEFLEHKDYHHSSAKKASFAEQTLFHEPAEQKYGPATTKRASFINQKFIDDLQEAKYLYPNTSRASYTDRRLTEDNLEPKLTPSYTKKTSVSDQKMIYEPLKRKSTAPNVKKTSFAEDMSFLQLMEAITPPQYIRKTSFADQKPSQESLESRRSSQYSQSNNIKVFIKTSTTSDQQSDLQNPRDQKHDKETLKTSHHSNERVSIPVPSYSIQETDVSRQSFHNVPRQEANIPSRNTHKYSK", "length": 657, "header": "tr|A0A9J7K365-1|A0A9J7K365_CRIGR Isoform 1 of Fibrous sheath-interacting protein 2 OS=Cricetulus griseus OX=10029 GN=LOC100750913 PE=4 SV=1 CANONICAL=A0A9J7K365-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K365-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K365/entry", "sequence": { "sequence": "MDLYLSNCIKAAEAAASKAASSSLKSDKDACSTKKHSVIPKIGPSSLLDLPLGAKLPIIPGSTNIFYTTNISEKLYQPSFGFNLNDPYCKLMETTYKSLHDPHLKSYFKRKDILKKLKQGGYITSNNKVICSLKELNKYRQYLTTLKIDFERNYVREQKIIESQVNKLNEERRACDDAAAAEFQQWLLQEGKKPFPNEDQLIKLRHLRMINKELDKLENTSERRNTLQLKEEDRQHWDNVRTKLNLRKQVEEEWQAKEMTLLIKIGEEVKREGKIEEHRRKIREEINRKKQAMLHKRIAYHLQKLQKRDSNEGNLETNISERRKQSERASSITPRKSSVTEKKTSQEHLERKSSTSSIKTSISFQRLFQESRESKPTSKTTKASFDEDRASFYELLETKFSPTDTGRSSFPEEQTFQEFLEHKDYHHSSAKKASFAEQTLFHEPAEQKYGPATTKRASFINQKFIDDLQEAKYLYPNTSRASYTDRRLTEDNLEPKLTPSYTKKTSVSDQKMIYEPLKRKSTAPNVKKTSFAEDMSFLQLMEAITPPQYIRKTSFADQKPSQESLESRRSSQYSQSNNIKVFIKTSTTSDQQSDLQNPRDQKHDKETLKTSHHSNERVSIPVPSYSIQETDVSRQSFHNVPRQEANIPSRNTHKYSK", "length": 657, "header": "tr|A0A9J7K365-1|A0A9J7K365_CRIGR Isoform 1 of Fibrous sheath-interacting protein 2 OS=Cricetulus griseus OX=10029 GN=LOC100750913 PE=4 SV=1 CANONICAL=A0A9J7K365-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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{ "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7K371-1", "uniprot_ac": "A0A9J7K371", "uniprot_id": "A0A9J7K371_CRIGR", "mass": { "chemical_mass": 65567.0, "monoisotopic_mass": 65567.0 }, "refseq": { "ac": "XP_035307249", "name": "uncharacterized protein C12orf56 homolog isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307249" }, "gene_names": [ { "name": "CUNH12orf56", "type": "recommended", "evidence": [ { "id": "A0A9J7K371", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K371" } ] }, { "name": "CUNH12orf56", "type": "synonym", "evidence": [ { "id": "XP_035307249", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307249" } ] } ], "protein_names": [ { "name": "Uncharacterized protein C12orf56 homolog isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7K371", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K371/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein C12orf56 homolog isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035307249", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307249" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 4% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035307249", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307249" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K371", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K371" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH12orf56", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K371", "locus": {} } ], "crossref": [ { "id": "A0A9J7K371", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K371", "database": "AlphaFoldDB", "categories": [] }, { "id": "100757013", "url": "https://www.ncbi.nlm.nih.gov/gene/100757013", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027878", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027878", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100757013", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757013", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K371", "url": "https://www.orthodb.org/?gene=A0A9J7K371", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR35354", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35354", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35354:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35354:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15087", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15087", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035307249", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307249", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K371", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K371", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K371-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K371-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASTARSGFPARTNSRLDAFLRRHLAPEVYDAVRAYEPCIVLSDAEKYTFKYVVLSDRLIYLTENPPKSIRRVVALRDVVAIDLIADYPEFLNLPDREINQHIRIVYSTVLKKECEKSKGVGKFLFSFHHSNANKKVKQDSNGPSFWRRKDSRSPDKSSLRSHQENGMPFKDSTPCPSDFPSEIPVRVDGNRNEIRSGNSLLASPIHSSCSLEKEESELHLYVISGTSSIFLHLKSSWNNYIIRATLSQESPSSSEHCHIIGNPKPYRSEEKIKHFSQLKSELFLQDNTLREILCVVTELRVAAQKNFILKRLFWKTSELFYFLVNKLHEYLPESRNKTTLHNKSQRVNELAACIEIIQTLGLMFRETEIESSRLSTLAAKKGTLFNLLVILISKPNVPKSCFLFNAQQPSDSTSAEMSFDAQLQKLILEYMDKATALFYEILLAFQQGNLGLGSTKLAVSWMMSSLQSCPPMMVFVASIIKQVVDGLSASLQLLTPCQAVLLYQRLYILKSCLQYSKALAERIRNDHSEEFRYFICMPALEKRLPVWYPITEPTTQLCHEVLQLINMQNVRGD", "length": 574, "header": "tr|A0A9J7K371-1|A0A9J7K371_CRIGR Isoform 1 of Uncharacterized protein C12orf56 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=CUNH12orf56 PE=4 SV=1 CANONICAL=A0A9J7K371-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K371-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K371/entry", "sequence": { "sequence": "MASTARSGFPARTNSRLDAFLRRHLAPEVYDAVRAYEPCIVLSDAEKYTFKYVVLSDRLIYLTENPPKSIRRVVALRDVVAIDLIADYPEFLNLPDREINQHIRIVYSTVLKKECEKSKGVGKFLFSFHHSNANKKVKQDSNGPSFWRRKDSRSPDKSSLRSHQENGMPFKDSTPCPSDFPSEIPVRVDGNRNEIRSGNSLLASPIHSSCSLEKEESELHLYVISGTSSIFLHLKSSWNNYIIRATLSQESPSSSEHCHIIGNPKPYRSEEKIKHFSQLKSELFLQDNTLREILCVVTELRVAAQKNFILKRLFWKTSELFYFLVNKLHEYLPESRNKTTLHNKSQRVNELAACIEIIQTLGLMFRETEIESSRLSTLAAKKGTLFNLLVILISKPNVPKSCFLFNAQQPSDSTSAEMSFDAQLQKLILEYMDKATALFYEILLAFQQGNLGLGSTKLAVSWMMSSLQSCPPMMVFVASIIKQVVDGLSASLQLLTPCQAVLLYQRLYILKSCLQYSKALAERIRNDHSEEFRYFICMPALEKRLPVWYPITEPTTQLCHEVLQLINMQNVRGD", "length": 574, "header": "tr|A0A9J7K371-1|A0A9J7K371_CRIGR Isoform 1 of Uncharacterized protein C12orf56 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=CUNH12orf56 PE=4 SV=1 CANONICAL=A0A9J7K371-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. 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"database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035307346", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307346", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K392", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K392", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K392-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K392-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"evidence": [ { "database": "UniProtKB", "id": "A0A9J7K392", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K392" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K392", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K392" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K392", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K392" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K392", "url": 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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. 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Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035307434", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307434" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K3B2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3B2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100750831", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3B2", "locus": {} } ], "crossref": [ { "id": "A0A9J7K3B2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K3B2", "database": "AlphaFoldDB", "categories": [] }, { "id": "100750831", "url": "https://www.ncbi.nlm.nih.gov/gene/100750831", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR010736", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010736", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051291", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051291", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100750831", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750831", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K3B2", "url": "https://www.orthodb.org/?gene=A0A9J7K3B2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21580", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21580", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21580:SF60", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21580:SF60", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07004", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07004", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035307434", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307434", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K3B2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3B2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K3B2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3B2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYDRAPRWLRWAEGGSTEEHVGPGSYQVLFPKQRATGGYAPFLSLSSRKSAYAVAEDTGKAVPGPAHYNVSEAQYKIKGCRSLQNREKRFTKLASDGPGPASYNPPLRGTLCTMIRQKISSRTPAVSKSIDVPSIPSPGKAHGYHLNDDDSILRRTPPASDNTIGPAYYKPQFDYPKSSLKYKGVHFGYGTGRQELIKHSGPGPGQYDIIQERTLQYENINIKKDKQHDRYAFVPRLYEEIILQEEKKGVPGPGRYEIKSQFQKTQSLAANITDESSFFLSESERFAPIKSSTPAPGTYNETRTAFKCSEKRSGEESPFGQSAARFTEDFEAQEMPGPGFYDISRKTVIAKVKKPHLKKPTRAGFRYFVPRPLIELQREVCVGPGPCDYQNDGIVDKLPNLIKRHTAFLSRKQKTTEVPPQMFPAPGSYEVQKSYDMSQVKHNYMPPRSSVAKKKHSSFLSTSPRPRCLGRISEGPGPATYSPIPMKSCAVISFVKSSERFEDVPQDSSPGPTTYELSPFLRHSVLKRTYNVTLPHPSSKKETKKETTSRKGQKAKQKL", "length": 559, "header": "tr|A0A9J7K3B2-1|A0A9J7K3B2_CRIGR Isoform 1 of Sperm-tail PG-rich repeat-containing protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100750831 PE=4 SV=1 CANONICAL=A0A9J7K3B2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K3B2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3B2/entry", "sequence": { "sequence": "MYDRAPRWLRWAEGGSTEEHVGPGSYQVLFPKQRATGGYAPFLSLSSRKSAYAVAEDTGKAVPGPAHYNVSEAQYKIKGCRSLQNREKRFTKLASDGPGPASYNPPLRGTLCTMIRQKISSRTPAVSKSIDVPSIPSPGKAHGYHLNDDDSILRRTPPASDNTIGPAYYKPQFDYPKSSLKYKGVHFGYGTGRQELIKHSGPGPGQYDIIQERTLQYENINIKKDKQHDRYAFVPRLYEEIILQEEKKGVPGPGRYEIKSQFQKTQSLAANITDESSFFLSESERFAPIKSSTPAPGTYNETRTAFKCSEKRSGEESPFGQSAARFTEDFEAQEMPGPGFYDISRKTVIAKVKKPHLKKPTRAGFRYFVPRPLIELQREVCVGPGPCDYQNDGIVDKLPNLIKRHTAFLSRKQKTTEVPPQMFPAPGSYEVQKSYDMSQVKHNYMPPRSSVAKKKHSSFLSTSPRPRCLGRISEGPGPATYSPIPMKSCAVISFVKSSERFEDVPQDSSPGPTTYELSPFLRHSVLKRTYNVTLPHPSSKKETKKETTSRKGQKAKQKL", "length": 559, "header": "tr|A0A9J7K3B2-1|A0A9J7K3B2_CRIGR Isoform 1 of Sperm-tail PG-rich repeat-containing protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100750831 PE=4 SV=1 CANONICAL=A0A9J7K3B2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K3E7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3E7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K3E7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3E7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQCQRAEKEAGFEAEGEDRDDSFLLLQQSVTLGSLTDVDQLIAKVHVMLKLDTAHDGPASPSAAPGPPPLRVLATVEQNQSLASQMLQSSVSAETGAPAHPGAIGCMLWERGRLQSRAAPYCVAELTLGASALCPVSRQPGLEGPPVTGKPSTPQPLSGPCRRGWPQSRAMSRLLQQRHGSQPETHTRGDDPHQLLQQLLLSGNLIKEAVPRLHSLQLQLQANLSSPRFLKPLSAPVQEPPSPGTPEQPAATLALG", "length": 256, "header": "tr|A0A9J7K3E7-1|A0A9J7K3E7_CRIGR Isoform 1 of Proto-oncogene FRAT1-like OS=Cricetulus griseus OX=10029 GN=LOC113838049 PE=3 SV=1 CANONICAL=A0A9J7K3E7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K3E7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3E7/entry", "sequence": { "sequence": "MQCQRAEKEAGFEAEGEDRDDSFLLLQQSVTLGSLTDVDQLIAKVHVMLKLDTAHDGPASPSAAPGPPPLRVLATVEQNQSLASQMLQSSVSAETGAPAHPGAIGCMLWERGRLQSRAAPYCVAELTLGASALCPVSRQPGLEGPPVTGKPSTPQPLSGPCRRGWPQSRAMSRLLQQRHGSQPETHTRGDDPHQLLQQLLLSGNLIKEAVPRLHSLQLQLQANLSSPRFLKPLSAPVQEPPSPGTPEQPAATLALG", "length": 256, "header": "tr|A0A9J7K3E7-1|A0A9J7K3E7_CRIGR Isoform 1 of Proto-oncogene FRAT1-like OS=Cricetulus griseus OX=10029 GN=LOC113838049 PE=3 SV=1 CANONICAL=A0A9J7K3E7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [], "pathway": [ { "id": "cge:113838049", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113838049", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K3E7", "url": 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"count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { 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"evidence": [ { "id": "A0A9J7K3F2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3F2/entry#names_and_taxonomy" } ] }, { "name": "elongin-A3 member D-like", "type": "synonym", "evidence": [ { "id": "XP_027289672", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289672" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023277002.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027289672", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289672" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K3F2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3F2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113838093", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3F2", "locus": {} } ], "crossref": [ { "id": "A0A9J7K3F2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K3F2", "database": "AlphaFoldDB", "categories": [] }, { "id": "113838093", "url": "https://www.ncbi.nlm.nih.gov/gene/113838093", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR051870", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051870", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113838093", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113838093", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K3F2", "url": "https://www.orthodb.org/?gene=A0A9J7K3F2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15141", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15141", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15141:SF75", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15141:SF75", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_027289672", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289672", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K3F2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3F2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K3F2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3F2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEMEAECRLEALHKLRERLCTETEPRQLYKTLKKLSSLPMLGDILEEIGFKQTIKLMKKQQLLVPFAKDLAARWSEQSQFGSQQDFDFPRSPKAEIRSNSPEDKPQKPAFRGHRENGSQVLEVSSSSPQHSMIESMDTSSKQITNGSPNAEPAGKRTQRGSFWDNQLDTESQVRVGKPQGTVGQPWPLEGMKTLSSKPEAGPAKQSLSLVRAKSPGPCIQEDHHLGSFEACLDYDCSPSSSVLPPRKRKRKSTWKAEAQSPGAKVPRDKSPSCEDLNLLLVASPFPETTSNLQTCFPQDGPEDSSLQDDLESAPWACRKYFKTPVVSGGRRARPLPQNSNQGRLAKQHSRWETHCQPALEEGPLWSLHQEDSPGTHINTAQRTGSQSESQTHLKMQESLQLRLQGLCARIKNTQTKKPQGRQTKTVAFQAQVTRPGEHADSGPGTEASTENVQSLPEASGPGLLQRAPRLRLGGSSIGSNTTRAKKPAPLMAKALKGYKKWWARK", "length": 505, "header": "tr|A0A9J7K3F2-1|A0A9J7K3F2_CRIGR Isoform 1 of Elongin-A3 member D-like OS=Cricetulus griseus OX=10029 GN=LOC113838093 PE=4 SV=1 CANONICAL=A0A9J7K3F2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K3F2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3F2/entry", "sequence": { "sequence": "MEMEAECRLEALHKLRERLCTETEPRQLYKTLKKLSSLPMLGDILEEIGFKQTIKLMKKQQLLVPFAKDLAARWSEQSQFGSQQDFDFPRSPKAEIRSNSPEDKPQKPAFRGHRENGSQVLEVSSSSPQHSMIESMDTSSKQITNGSPNAEPAGKRTQRGSFWDNQLDTESQVRVGKPQGTVGQPWPLEGMKTLSSKPEAGPAKQSLSLVRAKSPGPCIQEDHHLGSFEACLDYDCSPSSSVLPPRKRKRKSTWKAEAQSPGAKVPRDKSPSCEDLNLLLVASPFPETTSNLQTCFPQDGPEDSSLQDDLESAPWACRKYFKTPVVSGGRRARPLPQNSNQGRLAKQHSRWETHCQPALEEGPLWSLHQEDSPGTHINTAQRTGSQSESQTHLKMQESLQLRLQGLCARIKNTQTKKPQGRQTKTVAFQAQVTRPGEHADSGPGTEASTENVQSLPEASGPGLLQRAPRLRLGGSSIGSNTTRAKKPAPLMAKALKGYKKWWARK", "length": 505, "header": "tr|A0A9J7K3F2-1|A0A9J7K3F2_CRIGR Isoform 1 of Elongin-A3 member D-like OS=Cricetulus griseus OX=10029 GN=LOC113838093 PE=4 SV=1 CANONICAL=A0A9J7K3F2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [], "pathway": [ { "id": "cge:113838093", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113838093", 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"count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 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"graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7K3F8-1", "uniprot_ac": "A0A9J7K3F8", "uniprot_id": "A0A9J7K3F8_CRIGR", "mass": { "chemical_mass": 11417.0, "monoisotopic_mass": 11417.0 }, "refseq": { "ac": "XP_027290101", "name": "zinc finger protein 431-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027290101" }, "gene_names": [ { "name": "LOC113838764", "type": "recommended", "evidence": [ { "id": "A0A9J7K3F8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3F8" } ] }, { "name": "LOC113838764", "type": "synonym", "evidence": [ { "id": "XP_027290101", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027290101" } ] } ], "protein_names": [ { "name": "Zinc finger protein 431-like", "type": "synonym", "evidence": [ { "id": "A0A9J7K3F8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3F8/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 431-like", "type": "synonym", 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This record is derived from a genomic sequence (NW_023276898.1) annotated using gene prediction method: Gnomon. 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Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K3L0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3L0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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{ "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": 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] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: NUT family member 2 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027290037", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027290037" }, { "id": "A0A9J7K3L6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3L6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 2% of CDS bases frameshifts :: corrected 1 indel internal stop codons :: corrected 4 genomic stop codon ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023277153.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027290037", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027290037" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K3L6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3L6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100759212", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3L6", "locus": {} } ], "crossref": [ { "id": "100759212", "url": "https://www.ncbi.nlm.nih.gov/gene/100759212", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR024309", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024309", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024310", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024310", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759212", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759212", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K3L6", "url": "https://www.orthodb.org/?gene=A0A9J7K3L6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22879", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22879", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22879:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22879:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12881", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12881", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027290037", "url": 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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035294683", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035294683" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K3P9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3P9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Otulinl", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3P9", "locus": {} } ], "crossref": [ { "id": "A0A9J7K3P9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K3P9", "database": "AlphaFoldDB", "categories": [] }, { "id": "100772539", "url": "https://www.ncbi.nlm.nih.gov/gene/100772539", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR023235", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023235", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772539", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772539", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K3P9", "url": "https://www.orthodb.org/?gene=A0A9J7K3P9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR33662", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33662", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33662:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33662:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF16218", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16218", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035294683", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035294683", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K3P9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3P9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K3P9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3P9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGSDQVHSWILITSQAVSTVWRITRAFVMMAVSLLTASLCYFRRLHLYLGHRLKWWIGYLQRKFKRNLSVEAEVDLLGYCAREWKGETPRAKLMRKAYEELFWRHHIKCVRPVKRDNYDALRSVLFQIFSQGLSFPSWMKEKDIVKLPEKLLFSQGCNWIQQYSFGPEKYTGSNVFGKLRKCVELLKMRWTEFSGMRDYHKRGSMCNILFSDAILEYKLYEALKFIMLYQVTEMYEQMKTNKVIPSLFRLLFSRESSSDPLSFMMNHLNSIGDTCGLEQIDMFILGYSLQVKIKVFRLFKFNSRDFTVCYPEEPLRDWPEISLLTENDRQYHIPVF", "length": 336, "header": "tr|A0A9J7K3P9-1|A0A9J7K3P9_CRIGR Isoform 1 of Inactive ubiquitin thioesterase OTULINL isoform X2 OS=Cricetulus griseus OX=10029 GN=Otulinl PE=3 SV=1 CANONICAL=A0A9J7K3P9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K3P9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3P9/entry", "sequence": { "sequence": "MGSDQVHSWILITSQAVSTVWRITRAFVMMAVSLLTASLCYFRRLHLYLGHRLKWWIGYLQRKFKRNLSVEAEVDLLGYCAREWKGETPRAKLMRKAYEELFWRHHIKCVRPVKRDNYDALRSVLFQIFSQGLSFPSWMKEKDIVKLPEKLLFSQGCNWIQQYSFGPEKYTGSNVFGKLRKCVELLKMRWTEFSGMRDYHKRGSMCNILFSDAILEYKLYEALKFIMLYQVTEMYEQMKTNKVIPSLFRLLFSRESSSDPLSFMMNHLNSIGDTCGLEQIDMFILGYSLQVKIKVFRLFKFNSRDFTVCYPEEPLRDWPEISLLTENDRQYHIPVF", "length": 336, "header": "tr|A0A9J7K3P9-1|A0A9J7K3P9_CRIGR Isoform 1 of Inactive ubiquitin thioesterase OTULINL isoform X2 OS=Cricetulus griseus OX=10029 GN=Otulinl PE=3 SV=1 CANONICAL=A0A9J7K3P9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035294550", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035294550" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K3T2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3T2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100751233", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3T2", "locus": {} } ], "crossref": [ { "id": "A0A9J7K3T2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K3T2", "database": "AlphaFoldDB", "categories": [] }, { "id": "100751233", "url": "https://www.ncbi.nlm.nih.gov/gene/100751233", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008974", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008974", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056423", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056423", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751233", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751233", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K3T2", "url": "https://www.orthodb.org/?gene=A0A9J7K3T2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24413", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24413", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00651", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00651", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22486", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22486", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24570", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24570", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035294550", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035294550", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K3T2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3T2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K3T2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3T2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTEDRVAESWGYTEISVQKFSYSWTISNFRFLLQEIGEAIKSPTFSSGSSDNDKWCLKVWTNGIDEDSKDYLSVHLTLSPVWARFQFSIRSGDREKTNGMISPRFFKFTPNQHWGFKKFIHRDLLLSLESWLLPDNELTVFCDVDLAVQDSLINSEDSTVPGFLVPRCTMADDLGQLWENSLFTDCILVVAGQDFGAHKAILAARSPVFRAMFENDMEESRKKRVEILDLEPQVFKAMMEFIYTGKAPDLHSMANAVLAAADKYGLERLKVLCEDALCRDLSVENAAHTLFLADLHGAGQLKTKALDFITAHASEVSETSSWKKMVGSHPHLLAEAFSSLASAHRSLLEPPPKRFKQS", "length": 358, "header": "tr|A0A9J7K3T2-1|A0A9J7K3T2_CRIGR Isoform 1 of Speckle-type POZ protein-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100751233 PE=3 SV=1 CANONICAL=A0A9J7K3T2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K3T2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3T2/entry", "sequence": { "sequence": "MTEDRVAESWGYTEISVQKFSYSWTISNFRFLLQEIGEAIKSPTFSSGSSDNDKWCLKVWTNGIDEDSKDYLSVHLTLSPVWARFQFSIRSGDREKTNGMISPRFFKFTPNQHWGFKKFIHRDLLLSLESWLLPDNELTVFCDVDLAVQDSLINSEDSTVPGFLVPRCTMADDLGQLWENSLFTDCILVVAGQDFGAHKAILAARSPVFRAMFENDMEESRKKRVEILDLEPQVFKAMMEFIYTGKAPDLHSMANAVLAAADKYGLERLKVLCEDALCRDLSVENAAHTLFLADLHGAGQLKTKALDFITAHASEVSETSSWKKMVGSHPHLLAEAFSSLASAHRSLLEPPPKRFKQS", "length": 358, "header": "tr|A0A9J7K3T2-1|A0A9J7K3T2_CRIGR Isoform 1 of Speckle-type POZ protein-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100751233 PE=3 SV=1 CANONICAL=A0A9J7K3T2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 17% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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"sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7K3X0-1", "uniprot_ac": "A0A9J7K3X0", "uniprot_id": "A0A9J7K3X0_CRIGR", "mass": { "chemical_mass": 45855.0, "monoisotopic_mass": 45855.0 }, "refseq": { "ac": "XP_035294689", "name": "LOW QUALITY PROTEIN: zinc finger protein 58-like isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035294689" }, "gene_names": [ { "name": "LOC100774106", "type": "recommended", "evidence": [ { "id": "A0A9J7K3X0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3X0" } ] }, { "name": "LOC100774106", "type": "synonym", "evidence": [ { "id": "XP_035294689", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035294689" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: zinc finger protein 58-like isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035294689", "database": "RefSeq", "url": 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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035294689", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035294689" } ] }, { "annotation": "May be involved in transcriptional regulation.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K3X0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3X0#function" }, { "database": "UniProtKB", "id": "ARBA00003767", "url": "https://www.uniprot.org/uniprotkb/ARBA00003767#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K3X0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3X0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100774106", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3X0", "locus": {} } ], "crossref": [ { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100774106", "url": "https://www.ncbi.nlm.nih.gov/gene/100774106", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050589", "url": 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"database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035294689", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035294689", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K3X0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3X0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K3X0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3X0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLSSWNAFIDYSPEESEYLDPAQWSLYRDVMLENYSNLLFLGLAVPKPHLVTFLEQRQEPSDVKRQAAATVYPGTLPNDYNVYNKXIDYNSVSIQHQRIHTREKPCKCKDCGKALSSYRTLSIHQTLYTGENPYKCKECHKAFCATNAWPPSSLFIHQKNHTDEKNYKCEEFGKLFSCPSMLKQHQRIHSGEKPHTCKECHKCKECGRSFYYPSMLKQHLRIHFREKPCKCEECGRAVGMASSASHIPGLSRKEGNTSLIAHGCNADSASSTGIYCRQPDTNPLKVEFSLPGSGNSFAQTSGKCSSGDCDITESLPGNPNRGFVLYKCVFPKVGRESFPAASPAASLTWRLVQGAAQPEALCGVRVPSWREPTWAGGKAEKLPGRCWAELAGIREVAGQDWERAIGLCPE", "length": 410, "header": "tr|A0A9J7K3X0-1|A0A9J7K3X0_CRIGR Isoform 1 of LOW QUALITY PROTEIN: zinc finger protein 58-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100774106 PE=4 SV=1 CANONICAL=A0A9J7K3X0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K3X0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3X0/entry", "sequence": { "sequence": "MLSSWNAFIDYSPEESEYLDPAQWSLYRDVMLENYSNLLFLGLAVPKPHLVTFLEQRQEPSDVKRQAAATVYPGTLPNDYNVYNKXIDYNSVSIQHQRIHTREKPCKCKDCGKALSSYRTLSIHQTLYTGENPYKCKECHKAFCATNAWPPSSLFIHQKNHTDEKNYKCEEFGKLFSCPSMLKQHQRIHSGEKPHTCKECHKCKECGRSFYYPSMLKQHLRIHFREKPCKCEECGRAVGMASSASHIPGLSRKEGNTSLIAHGCNADSASSTGIYCRQPDTNPLKVEFSLPGSGNSFAQTSGKCSSGDCDITESLPGNPNRGFVLYKCVFPKVGRESFPAASPAASLTWRLVQGAAQPEALCGVRVPSWREPTWAGGKAEKLPGRCWAELAGIREVAGQDWERAIGLCPE", "length": 410, "header": "tr|A0A9J7K3X0-1|A0A9J7K3X0_CRIGR Isoform 1 of LOW QUALITY PROTEIN: zinc finger protein 58-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100774106 PE=4 SV=1 CANONICAL=A0A9J7K3X0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"MPWPLKYEARSVETSDFNMHGSYGSIDTNTDPSCNRTTDLKMAFGNSLGLDITLVLGGKKVTLINENRFYTIWDFLDYWIFNNTWISILFTIFLGVAFEIILIRTCELFKKKLKLWKNSGLYSQRQDEDVFPKGEILAIECWSISKTSSAERVEAFSERVTTSPPCEEKGNNIRKETISSNEYEYQGSHFCETHSSSGGTRKSFSMIHSKVKNIFMRSFYRKDPQSKYQTKSFSSSNLFSIMKTNRKKNTLPVSFPSTFTFTRAEDLNVTPCPPVHLLLSLDQIKHLEENVRRKIPVNPKALSGREADCLHPRSQESLIHYQHPKEEFLPAEALDTFPDQSAMQNQLIREEQFTSQTQQCIHNQESVISQPGFIQPLDVMRQPFSSSTQDSFQSQQIDHKDKSQHFNHIPCIDETEDLTKGLESDEHFSETQCSVYFNDQNKSNHLVTGQNSVFQNTDFLSLRSNSLAEDFPQQNVIPGQQPVASLESNQHCAHSSMSLSLNIKRQRNKREIPDNERKLNLKVPHPKAKKTSHSQVLPIIVCHTSENKITFRCKKKKNIVHQRKTMPDIALHLISVSKLITPHVKKYFLKCLVAVIPDLITCERFLQAQNKSLDTEKINSTRADKHTDRDEAAGPMHPPSMPEKSSASECLIETTEHRVPFCEKPTQTLDGHITEDKEDLNKDLCAVATRPFKVRKIASGPKNVLSVKHKFKVKKPAFSLRLSVTAHNTLNRRKVGDRFEINSKQMLHDVILAPGFLNVQPQRSSIQNNKTDIKITPPKTHVERKEKNLDSLDKERKAVDAPEVQLCCDVKVLPETVAPVRSFRFDACPVKSETKMEKEMFQAVSLTEAVTESVDSPRMDSFCVANTKTSAATQTELQYCAELALDPLTSGKLLAKDSLRQPSNVPNDGNDTREISCGFNQNTFPCSVNYCMPVLIHSKKKEQIRFTNMSTARFKYMNKVKPMASKTFNITGNKKKSKLDLKIKLKRVDQAKAFLPECQNTICLSNHGDLQEVFCHAQLKQGGLASQIRVDCVPESSEFYNREKNFKEEKQNPFVQAASQHGQHRWADADQRKETLTDEPEPSPISLSQEQPANNQGVKYQKDSLKSTSETSLQMAPIQAEGLQTTTRTESGINVPMVPKILSPKAGTSSPGEFTKMTDDDLESYENSEHELELYPAEKDSETSTGLQVAFLQSSDSVTRSSVLRPKGKRKVLRSKRHTTARQRHRTMPEIKPSVPQSVGCRYSKKQNCKEMKYSWIISEEKCYKMGNIVGACLDFIYSTVYILSNKKNRSSKPWIDEQRIRRLSHRERIREKSPNGRNTHFLGSADLSSSSSMKNYEEEVEEEPEDILISENSPSLTCATYQEKDHDQEGRTIAQVQAQTLTEVISCSTPCPIPDELQLEKLEDCFNVSPLTFEEDKDNALSKGECDLSDERRHKEQAADSEREPKELSASYANPNHSGEIKCDSTIMEGTDPEGKNADEISYLTDVALDINMSSKIETEESTSSKKTPCSVPRKPEILLHEGKFTSDDIKEIDLQSKEERENDDDTLLESFPQDSQHFVFCSHQSRDPISHELRKEGGKNILFTVEQEIPQPSQSAGLTQKEYAMCMSSSKGPPIQSQTDEVNPDRTKYGISDDGTHEQKLNSWDRLEREGLKNDLQATITESLNLSTPQALRSERKIKVSIRKALQGKMCSIGITMKGRKTAVSKVLTISQCGHRKNLLPKTLKPQISEFIHSAVLSDSFNIKVLKDPTAEKNKRLLTQELAATMLESLDFSTPTSKEKENLKLMDKGNEMSNNYLSVKTRKAEISQTLTTAGCGTPKQGKLMADLSLNTTFSPMPVSLDLNTCGGIQDRDMMWTMRFSTDQSEHEERAWCTDYMDEDTTSNSTKDVKGQGGEEGPSISSPQNMTEPNSVQSGLQLINSATYPELERTLYDGQAEPVNVNDLQCSMVDVTSNTLSLHSLAYSEVDTRIHEEQAMQITQSSHQPKLQRPSDTEEICANSNLEPILNNGKCSIEYTSQKEESTTTEKTMHLKEKPSVLQKIQLDITEPGQELQKIKDELNVDETSTSMWVSSPCLKSDTRIEEADGITEVTLHFLTELSLQTSSAILDEVRKECAKGHTTSATLKQEEHVLQKTEHEVKIFGEKVTMHTEDKDCTGNKTLSQDLFSSSKDQGEIDPQNEEQERVDGKDEKEQTYNNDGKDQEKMDLNYTKQGKCSQDDREEKEKNPEGKEQRETIGDGQKHEEGCLENGEQETWNHKCDTQGEVNPNSIEPGKADQQRESKEKVAPEYLPSQSSHKLMSIRTEGEEQTQGTMKSANLQLQQQKLLETGKTKQTESAEDDDKSNVKIGKQCESQTWMDGGKNVHRKDVMPSKDTSSNTNQLPLSHVPRTTGHYGTNTTDEQTNVNENLGHVQERNCELGEGLTLASLPHSKLDIRIKVKKETCIETGSFSPYSQSMEPSDAETSSFTASSLNNIINDSKRSRYMSYKEENRVKTFERGTVHHKAECVNINKSPLSYVPEIKRPKLHLKEKSKKKQEGRKAKGMLLREARPVITSSNASTLDKSKEVETEVRQRHLPHSMPQESLPEGQVASTKSISNHAKRRKLHLSATDVLTRPSDLGLKAKISATYHGLNVKENSIPRKRRTSWRSSKEKTGQKQGKTRESIVFTTKIDSSTPSVPHHGLLPLQEDFLVASCTGELTHSGSNESITLPNAISKANIQELYDEAKVRVIVKDSKDRMHLRARISPTAHFNDSMPPFDIREQREKPEHTKGDPTMIVLNETASLPFLSFQKSDTRVSKEENILGETEISFLPPKSESDKRACMGSSGYGLSNRKESTHKNEKNRLIKDVKDKEFTKSMDQSVKKLPWSHTLRIKELQGKAQVETLVDLANTILSLSISQLQLNTYLGAQITGGEVYSEIKSLKEHVPQKEKEDKKRHVNVKSKMHAKDINCKTNKSPDLPMKNLSDLHWKTREPRGKVEQDISEPRVTLTKKLTKTSTATSPQPILIGNPGIMEECTPVLTRSSASFGYFQKSSDSERGIYIQPTTGDTSVSLQIEKQHMSGEKEEPGMQIAKIITHKYQETRVQELQDEQGLVLTKSSYLLSDLLHSKLYEKIEFNDTKLILRNSASQKLSTKGKPLPREAIVDDTTKGVQKQHLPQREETYRKEIIDRQCTDVTLKSQNSLFSQKLHRTEPMHTNSPKPKEQDNKSEPRVLRKMYNSKPPPDITLCKAVQVDEGRSESAPFYPFPQMFPAFSDAEKMADTEARCGYVRKEKPCTKQVEKTVDLTVGVQCQRTKVPPISNLLNAKEFVLNMKLLEKKAQKDKSELAVVASRTFLSMSSPASRTSLGKTQKDTARVTGHTCPQGNVQEAADIQERANRESAEDDSNCIVKTTEHNMLQRQATPQESKSVTTVYQKSGLPQVDLACESDSPDLNIDLTRLDMIKREKMLNIKGQKCQPEKCEKEPSTKIGNCKEENEIKDNLSHKTSPKFPVSPPKKSLKETLTTSGTLVCSKGPMTERGQETGSDRSIKPKKVKQSNATVSEMLPPEKTFQNKEEQNVDMKKQAIPHSKSGQQIKAKSFPPLNVRVQNKYQRIPLLTDVDEKTAVNISPPMQSGAHMSITEFNPTRRKEDSPSIVLEQEQCDLELPHKSHDSLLNSEPRNLCLQTIQGDVSGSKDLNIIHIPEMNTTGQEEIRKDTLTSPECTFEDQTSEMVNISLQKCDSHLQRAISEDYSCRVYMKVIKMNFRSPRGDNTHANLKIDYQRRFPSPSCVKTPTLNVSNSSKVMTAPKGIEKQETWNPPSIVPLSHILYKFSKKEKADLLVHLCTKSLEIQATGLPRIVAQSYVMANAQDKSKPLFKCIHSATKDPKRTNRVLVLFDERSFCEIDYDLQCKYLRSIPRPSVTVVSKPNVLPKHTSKLRMGSGSECKKEEECEKSNIRSFDKELLQHVPFQKKNLQQSSSLTRKFQEPANVPVLYSGLQGTKQKDMTILSDLKLQMASEQDKQCHVWFQETSSYKKHSVARTRKNISDVADSYSSWISDGCTNDVPLNTETSTDLAEYPVSEESNSEECVFIETNFYLTQDSQKLVFEVPKGIPLADTHKVDEPTVLKPFYCGDPNDYHTKTHRKHTSPMAPSCYQSQNTSKYKINSKMQSPDWLSHSSSNTVEIESTKSCITWNKDWSSTTWSTTSYSLTSSTTESNIKLNLAKKHGKSYMYPQVKERRIAKSDLWRKSNVQQSSNYSHSHSGEKHPRRKRLYHYEPKDPNPQTNQMPEPNAHWQNVKFYSERRENQPFLYACMPADSMDVIPQTIRWVIPRKILQQRNFKVPRVAHISKSWNLLSSSKKLLGSLAWAFNRIRYH", "length": 4355, "header": "tr|A0A9J7K3Y0-1|A0A9J7K3Y0_CRIGR Isoform 1 of Uncharacterized protein LOC118237895 OS=Cricetulus griseus OX=10029 GN=LOC118237895 PE=4 SV=1 CANONICAL=A0A9J7K3Y0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K3Y0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3Y0/entry", "sequence": { "sequence": "MPWPLKYEARSVETSDFNMHGSYGSIDTNTDPSCNRTTDLKMAFGNSLGLDITLVLGGKKVTLINENRFYTIWDFLDYWIFNNTWISILFTIFLGVAFEIILIRTCELFKKKLKLWKNSGLYSQRQDEDVFPKGEILAIECWSISKTSSAERVEAFSERVTTSPPCEEKGNNIRKETISSNEYEYQGSHFCETHSSSGGTRKSFSMIHSKVKNIFMRSFYRKDPQSKYQTKSFSSSNLFSIMKTNRKKNTLPVSFPSTFTFTRAEDLNVTPCPPVHLLLSLDQIKHLEENVRRKIPVNPKALSGREADCLHPRSQESLIHYQHPKEEFLPAEALDTFPDQSAMQNQLIREEQFTSQTQQCIHNQESVISQPGFIQPLDVMRQPFSSSTQDSFQSQQIDHKDKSQHFNHIPCIDETEDLTKGLESDEHFSETQCSVYFNDQNKSNHLVTGQNSVFQNTDFLSLRSNSLAEDFPQQNVIPGQQPVASLESNQHCAHSSMSLSLNIKRQRNKREIPDNERKLNLKVPHPKAKKTSHSQVLPIIVCHTSENKITFRCKKKKNIVHQRKTMPDIALHLISVSKLITPHVKKYFLKCLVAVIPDLITCERFLQAQNKSLDTEKINSTRADKHTDRDEAAGPMHPPSMPEKSSASECLIETTEHRVPFCEKPTQTLDGHITEDKEDLNKDLCAVATRPFKVRKIASGPKNVLSVKHKFKVKKPAFSLRLSVTAHNTLNRRKVGDRFEINSKQMLHDVILAPGFLNVQPQRSSIQNNKTDIKITPPKTHVERKEKNLDSLDKERKAVDAPEVQLCCDVKVLPETVAPVRSFRFDACPVKSETKMEKEMFQAVSLTEAVTESVDSPRMDSFCVANTKTSAATQTELQYCAELALDPLTSGKLLAKDSLRQPSNVPNDGNDTREISCGFNQNTFPCSVNYCMPVLIHSKKKEQIRFTNMSTARFKYMNKVKPMASKTFNITGNKKKSKLDLKIKLKRVDQAKAFLPECQNTICLSNHGDLQEVFCHAQLKQGGLASQIRVDCVPESSEFYNREKNFKEEKQNPFVQAASQHGQHRWADADQRKETLTDEPEPSPISLSQEQPANNQGVKYQKDSLKSTSETSLQMAPIQAEGLQTTTRTESGINVPMVPKILSPKAGTSSPGEFTKMTDDDLESYENSEHELELYPAEKDSETSTGLQVAFLQSSDSVTRSSVLRPKGKRKVLRSKRHTTARQRHRTMPEIKPSVPQSVGCRYSKKQNCKEMKYSWIISEEKCYKMGNIVGACLDFIYSTVYILSNKKNRSSKPWIDEQRIRRLSHRERIREKSPNGRNTHFLGSADLSSSSSMKNYEEEVEEEPEDILISENSPSLTCATYQEKDHDQEGRTIAQVQAQTLTEVISCSTPCPIPDELQLEKLEDCFNVSPLTFEEDKDNALSKGECDLSDERRHKEQAADSEREPKELSASYANPNHSGEIKCDSTIMEGTDPEGKNADEISYLTDVALDINMSSKIETEESTSSKKTPCSVPRKPEILLHEGKFTSDDIKEIDLQSKEERENDDDTLLESFPQDSQHFVFCSHQSRDPISHELRKEGGKNILFTVEQEIPQPSQSAGLTQKEYAMCMSSSKGPPIQSQTDEVNPDRTKYGISDDGTHEQKLNSWDRLEREGLKNDLQATITESLNLSTPQALRSERKIKVSIRKALQGKMCSIGITMKGRKTAVSKVLTISQCGHRKNLLPKTLKPQISEFIHSAVLSDSFNIKVLKDPTAEKNKRLLTQELAATMLESLDFSTPTSKEKENLKLMDKGNEMSNNYLSVKTRKAEISQTLTTAGCGTPKQGKLMADLSLNTTFSPMPVSLDLNTCGGIQDRDMMWTMRFSTDQSEHEERAWCTDYMDEDTTSNSTKDVKGQGGEEGPSISSPQNMTEPNSVQSGLQLINSATYPELERTLYDGQAEPVNVNDLQCSMVDVTSNTLSLHSLAYSEVDTRIHEEQAMQITQSSHQPKLQRPSDTEEICANSNLEPILNNGKCSIEYTSQKEESTTTEKTMHLKEKPSVLQKIQLDITEPGQELQKIKDELNVDETSTSMWVSSPCLKSDTRIEEADGITEVTLHFLTELSLQTSSAILDEVRKECAKGHTTSATLKQEEHVLQKTEHEVKIFGEKVTMHTEDKDCTGNKTLSQDLFSSSKDQGEIDPQNEEQERVDGKDEKEQTYNNDGKDQEKMDLNYTKQGKCSQDDREEKEKNPEGKEQRETIGDGQKHEEGCLENGEQETWNHKCDTQGEVNPNSIEPGKADQQRESKEKVAPEYLPSQSSHKLMSIRTEGEEQTQGTMKSANLQLQQQKLLETGKTKQTESAEDDDKSNVKIGKQCESQTWMDGGKNVHRKDVMPSKDTSSNTNQLPLSHVPRTTGHYGTNTTDEQTNVNENLGHVQERNCELGEGLTLASLPHSKLDIRIKVKKETCIETGSFSPYSQSMEPSDAETSSFTASSLNNIINDSKRSRYMSYKEENRVKTFERGTVHHKAECVNINKSPLSYVPEIKRPKLHLKEKSKKKQEGRKAKGMLLREARPVITSSNASTLDKSKEVETEVRQRHLPHSMPQESLPEGQVASTKSISNHAKRRKLHLSATDVLTRPSDLGLKAKISATYHGLNVKENSIPRKRRTSWRSSKEKTGQKQGKTRESIVFTTKIDSSTPSVPHHGLLPLQEDFLVASCTGELTHSGSNESITLPNAISKANIQELYDEAKVRVIVKDSKDRMHLRARISPTAHFNDSMPPFDIREQREKPEHTKGDPTMIVLNETASLPFLSFQKSDTRVSKEENILGETEISFLPPKSESDKRACMGSSGYGLSNRKESTHKNEKNRLIKDVKDKEFTKSMDQSVKKLPWSHTLRIKELQGKAQVETLVDLANTILSLSISQLQLNTYLGAQITGGEVYSEIKSLKEHVPQKEKEDKKRHVNVKSKMHAKDINCKTNKSPDLPMKNLSDLHWKTREPRGKVEQDISEPRVTLTKKLTKTSTATSPQPILIGNPGIMEECTPVLTRSSASFGYFQKSSDSERGIYIQPTTGDTSVSLQIEKQHMSGEKEEPGMQIAKIITHKYQETRVQELQDEQGLVLTKSSYLLSDLLHSKLYEKIEFNDTKLILRNSASQKLSTKGKPLPREAIVDDTTKGVQKQHLPQREETYRKEIIDRQCTDVTLKSQNSLFSQKLHRTEPMHTNSPKPKEQDNKSEPRVLRKMYNSKPPPDITLCKAVQVDEGRSESAPFYPFPQMFPAFSDAEKMADTEARCGYVRKEKPCTKQVEKTVDLTVGVQCQRTKVPPISNLLNAKEFVLNMKLLEKKAQKDKSELAVVASRTFLSMSSPASRTSLGKTQKDTARVTGHTCPQGNVQEAADIQERANRESAEDDSNCIVKTTEHNMLQRQATPQESKSVTTVYQKSGLPQVDLACESDSPDLNIDLTRLDMIKREKMLNIKGQKCQPEKCEKEPSTKIGNCKEENEIKDNLSHKTSPKFPVSPPKKSLKETLTTSGTLVCSKGPMTERGQETGSDRSIKPKKVKQSNATVSEMLPPEKTFQNKEEQNVDMKKQAIPHSKSGQQIKAKSFPPLNVRVQNKYQRIPLLTDVDEKTAVNISPPMQSGAHMSITEFNPTRRKEDSPSIVLEQEQCDLELPHKSHDSLLNSEPRNLCLQTIQGDVSGSKDLNIIHIPEMNTTGQEEIRKDTLTSPECTFEDQTSEMVNISLQKCDSHLQRAISEDYSCRVYMKVIKMNFRSPRGDNTHANLKIDYQRRFPSPSCVKTPTLNVSNSSKVMTAPKGIEKQETWNPPSIVPLSHILYKFSKKEKADLLVHLCTKSLEIQATGLPRIVAQSYVMANAQDKSKPLFKCIHSATKDPKRTNRVLVLFDERSFCEIDYDLQCKYLRSIPRPSVTVVSKPNVLPKHTSKLRMGSGSECKKEEECEKSNIRSFDKELLQHVPFQKKNLQQSSSLTRKFQEPANVPVLYSGLQGTKQKDMTILSDLKLQMASEQDKQCHVWFQETSSYKKHSVARTRKNISDVADSYSSWISDGCTNDVPLNTETSTDLAEYPVSEESNSEECVFIETNFYLTQDSQKLVFEVPKGIPLADTHKVDEPTVLKPFYCGDPNDYHTKTHRKHTSPMAPSCYQSQNTSKYKINSKMQSPDWLSHSSSNTVEIESTKSCITWNKDWSSTTWSTTSYSLTSSTTESNIKLNLAKKHGKSYMYPQVKERRIAKSDLWRKSNVQQSSNYSHSHSGEKHPRRKRLYHYEPKDPNPQTNQMPEPNAHWQNVKFYSERRENQPFLYACMPADSMDVIPQTIRWVIPRKILQQRNFKVPRVAHISKSWNLLSSSKKLLGSLAWAFNRIRYH", "length": 4355, "header": "tr|A0A9J7K3Y0-1|A0A9J7K3Y0_CRIGR Isoform 1 of Uncharacterized protein LOC118237895 OS=Cricetulus griseus OX=10029 GN=LOC118237895 PE=4 SV=1 CANONICAL=A0A9J7K3Y0-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 3045, "start_aa": "Thr", "end_pos": 3045, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr3045", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K3Y0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3Y0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K3Y0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3Y0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:118237895", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118237895", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 1289, "end_pos": 1291, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1408, "end_pos": 1410, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1457, "end_pos": 1459, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1493, "end_pos": 1495, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1667, "end_pos": 1669, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1832, "end_pos": 1834, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1885, "end_pos": 1887, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1906, "end_pos": 1908, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2158, "end_pos": 2160, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2208, "end_pos": 2210, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2396, "end_pos": 2398, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2476, "end_pos": 2478, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2510, "end_pos": 2512, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2556, "end_pos": 2558, "annotation": "n_glycosylation_sequon" }, { "start_pos": 268, "end_pos": 270, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2704, "end_pos": 2706, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2751, "end_pos": 2753, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2779, "end_pos": 2781, "annotation": "n_glycosylation_sequon" }, 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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035294815", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035294815" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K416", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K416" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100772901", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K416", "locus": {} } ], "crossref": [ { "id": "A0A9J7K416", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K416", "database": "AlphaFoldDB", "categories": [] }, { "id": "100772901", "url": "https://www.ncbi.nlm.nih.gov/gene/100772901", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008974", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008974", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056423", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056423", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772901", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772901", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K416", "url": "https://www.orthodb.org/?gene=A0A9J7K416", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24413", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24413", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00651", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00651", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22486", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22486", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24570", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24570", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035294815", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035294815", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K416", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K416", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K416-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K416-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTEDGAAERWGYTEISVQKFSYSWTISNFRFLLQEVGEAIKSPTFSSGSSVNDKWCLKVRKNGIDEDSKDYLSVHLTLHSCPRSPVWARFQFSIASVDGEKTQGMISPRFFKFTPNQHWGFTKFIHRDLLLSLESWLLPDNELTVLCDVDLSVQDSFINSEDSTVPGIQVPRSTMADELGQLWEISLFTDCSLLVAGKEFRAHKAILAARSPVFRAMFEHDMEESRTNSVEILDLEPHVFKAMMEFIYSGKAPDLHDIADAVLAAADKYGLERLKVMCEDVLCRDLSVENAAHTLILADLHSAEQLKTKALDFITAHASEVSETSCWKKMVGSHPHLLAEAFSSLASDHSSFLGPPSKRFKQS", "length": 363, "header": "tr|A0A9J7K416-1|A0A9J7K416_CRIGR Isoform 1 of Speckle-type POZ protein-like OS=Cricetulus griseus OX=10029 GN=LOC100772901 PE=3 SV=1 CANONICAL=A0A9J7K416-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K416-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K416/entry", "sequence": { "sequence": "MTEDGAAERWGYTEISVQKFSYSWTISNFRFLLQEVGEAIKSPTFSSGSSVNDKWCLKVRKNGIDEDSKDYLSVHLTLHSCPRSPVWARFQFSIASVDGEKTQGMISPRFFKFTPNQHWGFTKFIHRDLLLSLESWLLPDNELTVLCDVDLSVQDSFINSEDSTVPGIQVPRSTMADELGQLWEISLFTDCSLLVAGKEFRAHKAILAARSPVFRAMFEHDMEESRTNSVEILDLEPHVFKAMMEFIYSGKAPDLHDIADAVLAAADKYGLERLKVMCEDVLCRDLSVENAAHTLILADLHSAEQLKTKALDFITAHASEVSETSCWKKMVGSHPHLLAEAFSSLASDHSSFLGPPSKRFKQS", "length": 363, "header": "tr|A0A9J7K416-1|A0A9J7K416_CRIGR Isoform 1 of Speckle-type POZ protein-like OS=Cricetulus griseus OX=10029 GN=LOC100772901 PE=3 SV=1 CANONICAL=A0A9J7K416-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K416", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K416" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K416", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K416" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100772901", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772901", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K416", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K416" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein catabolic process", "id": "GO:0030163", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030163", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K416", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K416" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7K416", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K416" }, { "id": "PS50097", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50097" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BTB", "eco_id": "ECO_0000259", "start_pos": 189, "end_pos": 251, "start_aa": "Thr", "end_aa": "Lys", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7K416", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K416" }, { "id": "PS50144", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50144" } ], "ann_type": 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"count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", 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"A0A9J7K418", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K418" } ] }, { "name": "Rabl2b", "type": "synonym", "evidence": [ { "id": "XP_035296720", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035296720" } ] } ], "protein_names": [ { "name": "small monomeric GTPase", "type": "recommended", "evidence": [ { "id": "A0A9J7K418", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K418/entry#names_and_taxonomy" } ] }, { "name": "3.6.5.2", "type": "synonym", "evidence": [ { "id": "A0A9J7K418", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K418/entry#names_and_taxonomy" } ] }, { "name": "rab-like protein 2B isoform X4", "type": "synonym", "evidence": [ { "id": "XP_035296720", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035296720" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035296720", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035296720" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K418", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K418" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Rabl2b", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K418", "locus": {} } ], "crossref": [ { "id": "A0A9J7K418", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K418", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd04124", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04124", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100755429", "url": "https://www.ncbi.nlm.nih.gov/gene/100755429", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001806", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001806", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005225", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005225", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041835", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041835", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755429", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755429", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K418", "url": "https://www.orthodb.org/?gene=A0A9J7K418", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47978", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47978", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00071", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00071", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035296720", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035296720", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "19669", "url": "https://www.rhea-db.org/rhea/19669", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MUA4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUA4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MUA4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUA4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GQD7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GQD7", "database": "UniProtKB", 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"sequence": "MAGDKAKHCELDQEKYDAHDNVKIICLGDSAVGKSKLMERFLMDGFQPQQLSTYALTLYKHTATVDGKTILVDFWDTAGQERFQSMHASYYHKAHACIMVFDVQRKITYKNLSTWYAELREFRPEIPCILVANKIDEAPMTLPPNSSPSLSGQANALLLSAADIQMTQKNFSFAKKFSLPLYFVSAADGTNVVKLFNDAIRLAVAYKESSQDFMDEVLQELENFKLEQKEEDAPDQEQSGMIKSPSPS", "length": 248, "header": "tr|A0A9J7K418-1|A0A9J7K418_CRIGR Isoform 1 of small monomeric GTPase OS=Cricetulus griseus OX=10029 GN=Rabl2b PE=3 SV=1 CANONICAL=A0A9J7K418-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MUA4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUA4/entry", "sequence": { "sequence": "MAGDKAKHCELDQEKYDAHDNVKIICLGDSAVGKSKLMERFLMDGFQPQQLSTYALTLYKHTATVDGKTILVDFWDTAGQERFQSMHASYYHKAHACIMVFDVQRKITYKNLSTWYAELREFRPEIPCILVANKIDADIQMTQKNFSFAKKFSLPLYFVSAADGTNVVKLFNDAIRLAVAYKESSQDFMDEVLQELENFKLEQKEEDAPDQEQSGMIKSPSPS", "length": 223, "header": "tr|A0A8C2MUA4-1|A0A8C2MUA4_CRIGR Computationally mapped isoform of small monomeric GTPase OS=Cricetulus griseus OX=10029 GN=Rabl2b PE=3 SV=1 CANONICAL=A0A9J7K418-1" }, "locus": 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##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035295079", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295079" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K424", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K424" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Nfam1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K424", "locus": {} } ], "crossref": [ { "id": "A0A9J7K424", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K424", "database": "AlphaFoldDB", "categories": [] }, { "id": "100752842", "url": "https://www.ncbi.nlm.nih.gov/gene/100752842", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR033549", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033549", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057883", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057883", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752842", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752842", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K424", "url": "https://www.orthodb.org/?gene=A0A9J7K424", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR35680", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35680", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35680:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35680:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF25830", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25830", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035295079", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295079", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K424", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K424", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K424-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K424-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVSLANTAVTFSCRINHQDMPEFKDFTVSLFHEDLHGKRSLKKPIYCQHSPGAENHTLDCVVKLSLPNASATGTYYCLVQEPISVQGSGTFILVRDRAYQPPSFKLQEDLLFGFTGLLCILSVLGTALLLWKKKQMSVLGKHITRTCLGPKSTSRTNKPPAESIYTDLQRRETEVYACIEAETASSVSSQSLPSKDKLNRFEEDNEFNLVYENL", "length": 214, "header": "tr|A0A9J7K424-1|A0A9J7K424_CRIGR Isoform 1 of NFAT activation molecule 1 OS=Cricetulus griseus OX=10029 GN=Nfam1 PE=4 SV=1 CANONICAL=A0A9J7K424-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K424-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K424/entry", "sequence": { "sequence": "MVSLANTAVTFSCRINHQDMPEFKDFTVSLFHEDLHGKRSLKKPIYCQHSPGAENHTLDCVVKLSLPNASATGTYYCLVQEPISVQGSGTFILVRDRAYQPPSFKLQEDLLFGFTGLLCILSVLGTALLLWKKKQMSVLGKHITRTCLGPKSTSRTNKPPAESIYTDLQRRETEVYACIEAETASSVSSQSLPSKDKLNRFEEDNEFNLVYENL", "length": 214, "header": "tr|A0A9J7K424-1|A0A9J7K424_CRIGR Isoform 1 of NFAT activation molecule 1 OS=Cricetulus griseus OX=10029 GN=Nfam1 PE=4 SV=1 CANONICAL=A0A9J7K424-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K424", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K424" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K424", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K424" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100752842", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752842", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "regulation of B cell differentiation", "id": "GO:0045577", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045577", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K424", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K424" } ], "pmid": "" }, { "name": "positive regulation of cytokine production", "id": "GO:0001819", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001819", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K424", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K424" } ], "pmid": "" }, { "name": "B cell receptor signaling pathway", "id": "GO:0050853", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050853", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K424", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K424" } ], "pmid": "" }, { "name": "positive regulation of B cell receptor signaling pathway", "id": "GO:0050861", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050861", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K424", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K424" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transmembrane signaling receptor activity", "id": "GO:0004888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004888", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K424", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K424" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane raft", "id": "GO:0045121", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045121", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K424", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K424" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 55, "end_pos": 57, "annotation": "n_glycosylation_sequon" }, { "start_pos": 68, "end_pos": 70, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7K424", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K424" }, { "id": "PF25830", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25830" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "NFAM1 Ig-like", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 95, "start_aa": "Met", "end_aa": "Arg", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 55, "end_pos": 57 }, { "start_pos": 68, "end_pos": 70 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7K460-1", "uniprot_ac": "A0A9J7K460", "uniprot_id": "A0A9J7K460_CRIGR", "mass": { "chemical_mass": 144454.0, "monoisotopic_mass": 144454.0 }, "refseq": { "ac": "XP_035308538", "name": "capping protein inhibiting regulator of actin dynamics", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308538" }, "gene_names": [ { "name": "Cracd", "type": "recommended", "evidence": [ { "id": "A0A9J7K460", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K460" } ] }, { "name": "Cracd", "type": "synonym", "evidence": [ { "id": "XP_035308538", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308538" } ] } ], "protein_names": [ { "name": "Capping protein inhibiting regulator of actin dynamics", "type": "synonym", "evidence": [ { "id": "A0A9J7K460", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K460/entry#names_and_taxonomy" } ] }, { "name": "capping protein inhibiting regulator of actin dynamics", "type": "synonym", "evidence": [ { "id": "XP_035308538", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308538" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308538", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308538" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K460", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K460" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cracd", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K460", "locus": {} } ], "crossref": [ { "id": "100770019", "url": "https://www.ncbi.nlm.nih.gov/gene/100770019", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR028030", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028030", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052853", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052853", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100770019", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770019", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K460", "url": "https://www.orthodb.org/?gene=A0A9J7K460", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47574", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47574", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47574:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47574:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15262", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15262", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035308538", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308538", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K460", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K460", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K460-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K460-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGARAFSHDSIFIPDGGAENEQTVQAMSQDNILGKVKTLQRQLGKNIKFGQRPSNAIPMKKAGSADASSDEDFFVTSPMEIVTHQDIVLLDTENKSSDTPSYSSPLNLPEAGSEMEEKVAPVKPSRPKRLLSSTGTIESVNLDAIPLAIARLDNSAAKHKLSVKPKNQRVSRKHRWLVQDRQNVPGSFESQSSVDQNGQPGEDKHIWHEEEPEPLDSHEDKRLQEEYWRELEAKCKRQKAEAAEKRRLEEQRRQALERRLWEESLRQELLEEEEGEEEDLQLEAGKAPPGEGRRSGLEEQRCAERELGEADHLEVEERRREQKEAERQEEKLRQRDAQRLEEELRQREAERQAEKLRQEEELRQLEAQRQEEELRQLEAQRQEEELRQLEAQRQEEELRKLEAQNQEEKLRQLEVQRQEEELRKLEAQKQEETLRQLEAQRQHAQEEEEARRMMLELRQEEELEADHIEELKGQAMQAPGPQVDEGPQSPEGESQPRLSDDSDQQSPLQRDLEKPEEQENLESVGQKEMAQEQKEEANAGSEPAGQRGDLSMECGGVDVEEREATQIDNPRPQEEQIGGTPASEDKNEAVPADKDRKVEELRWQEVDERQTMPRPYTFQVSSGGRQILFPKVNLSPVTPAKDTSSAPVTQEPPVPRGAAPHALPSALSIPHTAILVTGAQLCGPAVNLSQIKDTACKSLLGLSEEKRPVDVPTVEVRSSGSKARPPPESPSNAAALAEWASIRSRILKNAEGDQRGDREPVRAGDEPAPRVRCDSRGNLRRTPPVNAKFSIMPAWQKFSDGGAETFKQSLDGESVRKKLGPAPGEETTPQPPPAAAPEPRKSMEKQEVSQEPPDTTDGCKFAKDLPSFLVPGLPSPQKAASRTGSTTTLDSETTSEIGKPDPVVPGGEEKVSPFGIKLRRTNYSLRFQCDQQAEQKKKKRHSSTGDTVDGGTPAAGSDPGDKEPAAVALKHGTSLPQEKKLAPRRDSAESPSRGHSVAAAQLGLPPASSQTLVPEQDKAVSKTPPIQKPALAPKPTSQTPPSSPLSKLSRPYLVELLARRPGKVDSEPNEACKESRESSDNQPSSPALPEEPKGPKRDEEEVPEKKPASPPLSSSQQERPSLTSETGRKEKPMLQSRHSLDGSKLTEKVETAQPLWITLALQKQKGFREQQATREERRQAREAKQAEKLSKEAVSVSPQPGSSRGSRAGSLHKSATPSEEKKPETAVSRLQRREQLKKANTLPTSVTVEISDSGPPAPLVKEAPKRFSTPDAAPVSTEPAWLALAKRKAKAWSDCPQIIK", "length": 1300, "header": "tr|A0A9J7K460-1|A0A9J7K460_CRIGR Isoform 1 of Capping protein inhibiting regulator of actin dynamics OS=Cricetulus griseus OX=10029 GN=Cracd PE=4 SV=1 CANONICAL=A0A9J7K460-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K460-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K460/entry", "sequence": { "sequence": 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"database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIHSKMMSANPEEDPLDTFLQYIEDMGMKAYDGLVIQNASDIARENDRLRNETNLAYLKEKNEKRRRQEETIKRIGGEVGRGQDASYAGKHFRMGFMTMPAPQDRLPHPCSSGFTVRSQSLHSVGGTEDDSSCGSRRQPPPKPKRDPSTKLSTSSETVNSTAATKSGRPLERAEVSAKPRPHSDEYSKKIPPPKPKRNPNTQLSTSFDETYIKKHVPRRTSLPRDSSLSQVCSPAADPEEEEPVYIEMVGNILRDFRKEDDDQSEAVYEEMKYPIFDDLGHDSKCDFDHHSCSSQCATPTVPDLDFIKSSGPCTPKGLLCEIPPPFPNLLSHRPPLLVFPPAPVHCSPNSDESPLTPLEVTKLPVLENVSYMKQPPGACPSSLPSHTSSHAKDQTGALGPVPAASVLSSSPPPPSTLYRTQSPHGYPKSHSTSPSPVSMGRSLTPLSLKRPPPYDAVHSGSLSRSSSSVPHSTPRPVSQDGAKMINAAVNTYSAAQSGSRSRTPTSPLEELTSLFTSGRSLLRKSSSGRRSKEPAEKSTEELKVRSHSTEPLPKLDSKERGHHGAASSREPRKAQEWDGTPGPPVVTSRMGRCSVSPTLLAGNHSSEPKVSCKLGRSASTSGVPPPSVTPLRQASDLQQSQVACMQWFHGDHTMLEMIEKKRCLCKEIKARQKTEKGLCKQDSMPILPSWKKNAGTKKYSPPPYSKQQTVFWDTAI", "length": 716, "header": "tr|A0A9J7K490-1|A0A9J7K490_CRIGR Isoform 1 of Neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Nyap2 PE=4 SV=1 CANONICAL=A0A9J7K490-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GRQ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GRQ2/entry", "sequence": { "sequence": "MIHSKMMSANPEEDPLDTFLQYIEDMGMKAYDGLVIQNASDIARENDRLRNETNLAYLKEKNEKRRRQEETIKRIGGEVGRGQDASYAGKHFRMGFMTMPAPQDRLPHPCSSGFTVRSQSLHSVGGTEDDSSCGSRRQPPPKPKRDPSTKLSTSSETVNSTAATKSGRPLERAEGKLIMPTSQSSPRASTSGNLFPPHGSQGRNMKVSAKPRPHSDEYSKKIPPPKPKRNPNTQLSTSFDETYIKKHVPRRTSLPRDSSLSQVCSPAADPEEEEPVYIEMVGNILRDFRKEDDDQSEAVYEEMKYPIFDDLGHDSKCDFDHHSCSSQCATPTVPDLDFIKSSGPCTPKGLLCEIPPPFPNLLSHRPPLLVFPPAPVHCSPNSDESPLTPLEVTKLPVLENVSYMKQPPGACPSSLPSHTSSHAKDQTGALGPVPAASVLSSSPPPPSTLYRTQSPHGYPKSHSTSPSPVSMGRSLTPLSLKRPPPYDAVHSGSLSRSSSSVPHSTPRPVSQDGAKMINAAVNTYSAAQSGSRSRTPTSPLEELTSLFTSGRSLLRKSSSGRRSKEPAEKSTEELKVRSHSTEPLPKLDSKERGHHGAASSREPRKAQEWDGTPGPPVVTSRMGRCSVSPTLLAGNHSSEPKVSCKLGRSASTSGVPPPSVTPLRQASDLQQSQVPSSLANRD", "length": 682, "header": "tr|A0A9J7GRQ2-1|A0A9J7GRQ2_CRIGR Computationally mapped isoform of Neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Nyap2 PE=4 SV=1 CANONICAL=A0A9J7K490-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K490-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K490/entry", "sequence": { "sequence": "MIHSKMMSANPEEDPLDTFLQYIEDMGMKAYDGLVIQNASDIARENDRLRNETNLAYLKEKNEKRRRQEETIKRIGGEVGRGQDASYAGKHFRMGFMTMPAPQDRLPHPCSSGFTVRSQSLHSVGGTEDDSSCGSRRQPPPKPKRDPSTKLSTSSETVNSTAATKSGRPLERAEVSAKPRPHSDEYSKKIPPPKPKRNPNTQLSTSFDETYIKKHVPRRTSLPRDSSLSQVCSPAADPEEEEPVYIEMVGNILRDFRKEDDDQSEAVYEEMKYPIFDDLGHDSKCDFDHHSCSSQCATPTVPDLDFIKSSGPCTPKGLLCEIPPPFPNLLSHRPPLLVFPPAPVHCSPNSDESPLTPLEVTKLPVLENVSYMKQPPGACPSSLPSHTSSHAKDQTGALGPVPAASVLSSSPPPPSTLYRTQSPHGYPKSHSTSPSPVSMGRSLTPLSLKRPPPYDAVHSGSLSRSSSSVPHSTPRPVSQDGAKMINAAVNTYSAAQSGSRSRTPTSPLEELTSLFTSGRSLLRKSSSGRRSKEPAEKSTEELKVRSHSTEPLPKLDSKERGHHGAASSREPRKAQEWDGTPGPPVVTSRMGRCSVSPTLLAGNHSSEPKVSCKLGRSASTSGVPPPSVTPLRQASDLQQSQVACMQWFHGDHTMLEMIEKKRCLCKEIKARQKTEKGLCKQDSMPILPSWKKNAGTKKYSPPPYSKQQTVFWDTAI", "length": 716, "header": "tr|A0A9J7K490-1|A0A9J7K490_CRIGR Isoform 1 of Neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Nyap2 PE=4 SV=1 CANONICAL=A0A9J7K490-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K490", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K490" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K490", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K490" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769806", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769806", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "neuron projection morphogenesis", "id": "GO:0048812", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048812", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K490", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K490" } ], "pmid": "" }, { "name": "phosphatidylinositol 3-kinase/protein kinase B signal transduction", "id": "GO:0043491", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043491", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K490", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K490" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 159, "end_pos": 161, "annotation": "n_glycosylation_sequon" }, { "start_pos": 368, "end_pos": 370, "annotation": "n_glycosylation_sequon" }, { "start_pos": 38, "end_pos": 40, "annotation": "n_glycosylation_sequon" }, { "start_pos": 51, "end_pos": 53, "annotation": "n_glycosylation_sequon" }, { "start_pos": 603, "end_pos": 605, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7K490", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K490" }, { "id": "PF15452", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15452" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter C-terminal", "eco_id": "ECO_0000259", "start_pos": 464, "end_pos": 716, "start_aa": "Arg", "end_aa": "Ile", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7K490", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K490" }, { "id": "PF15439", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15439" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter N-terminal", "eco_id": "ECO_0000259", "start_pos": 56, "end_pos": 428, "start_aa": "Ala", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 159, "end_pos": 161 }, { "start_pos": 368, "end_pos": 370 }, { "start_pos": 38, "end_pos": 40 }, { "start_pos": 51, "end_pos": 53 }, { "start_pos": 603, "end_pos": 605 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", 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0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7K4F2-1", "uniprot_ac": "A0A9J7K4F2", "uniprot_id": "A0A9J7K4F2_CRIGR", "mass": { "chemical_mass": 67032.0, "monoisotopic_mass": 67032.0 }, "refseq": { "ac": "XP_035308921", "name": "WD repeat-containing protein 1-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308921" }, "gene_names": [ { "name": "LOC113832249", "type": "recommended", "evidence": [ { "id": "A0A9J7K4F2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4F2" } ] }, { "name": "LOC113832249", "type": "synonym", "evidence": [ { "id": "XP_035308921", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308921" } ] } ], "protein_names": [ { "name": "WD repeat-containing protein 1-like", "type": "synonym", "evidence": [ { "id": "XP_035308921", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308921" }, { "id": "A0A9J7K4F2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4F2/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 58% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308921", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308921" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K4F2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4F2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113832249", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4F2", "locus": {} } ], "crossref": [ { "id": "A0A9J7K4F2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K4F2", "database": "AlphaFoldDB", "categories": [] }, { "id": "113832249", "url": "https://www.ncbi.nlm.nih.gov/gene/113832249", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113832249", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113832249", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K4F2", "url": "https://www.orthodb.org/?gene=A0A9J7K4F2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19856", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19856", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19856:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19856:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035308921", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308921", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K4F2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4F2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K4F2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4F2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRVVLLKDQKKCFSIDNPGYEPEVVAVHPGGDTVAVGSSDGKVRVYSILGSTLKNEGKLLEAKGPVTDLAYSHDGAFLAVCDASKVVTVFSVADDYSENNVFYGHHAKIVCLAWSPDNEHFASGGMDMMVYVWTLSDPETKVKIQAHNKVINCVDIKQSRPYRPATGSDDNCSILRGGPPFKFKLTIGVVLLKDQKKCFSIDNPGYEPEVVAVHPGGDTVAVGSSDGKVRVYSILGSTLKNEGKLLEAKGPVTDLAYSHDGAFLAVCDASKVVTVFSVADDYSENNVFYGHHAKIVCLAWSPDNEHFASGGMDMMVYVWTLSDPETKVKIQASISSETPLDMSFKAPKQSLVHINPYSILRIGAIFLWEGGSSVGEITAHNKVINCVDIKQSRPYRPATGSDDNCSILRGGPPFKFKLTIGVVLLKDQKKCFSIDNPGYEPEVVAVHPGGDTVAVGSSDGKVRVYSILGSTLKNEGKLLEAKGPVTDLAYSHDGAFLAVCDASKVVTVFSVADDYSENNVFYGHHAKIVCLAWSPDNEHFASGGMDMMVYVWTLSDPETKVKIQGLEPSSYGRVALLWVRSQHTTKSSTVWTSSRAGPTDQPLGVMITAAFFEGALLSNSS", "length": 621, "header": "tr|A0A9J7K4F2-1|A0A9J7K4F2_CRIGR Isoform 1 of WD repeat-containing protein 1-like OS=Cricetulus griseus OX=10029 GN=LOC113832249 PE=3 SV=1 CANONICAL=A0A9J7K4F2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K4F2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4F2/entry", "sequence": { "sequence": "MRVVLLKDQKKCFSIDNPGYEPEVVAVHPGGDTVAVGSSDGKVRVYSILGSTLKNEGKLLEAKGPVTDLAYSHDGAFLAVCDASKVVTVFSVADDYSENNVFYGHHAKIVCLAWSPDNEHFASGGMDMMVYVWTLSDPETKVKIQAHNKVINCVDIKQSRPYRPATGSDDNCSILRGGPPFKFKLTIGVVLLKDQKKCFSIDNPGYEPEVVAVHPGGDTVAVGSSDGKVRVYSILGSTLKNEGKLLEAKGPVTDLAYSHDGAFLAVCDASKVVTVFSVADDYSENNVFYGHHAKIVCLAWSPDNEHFASGGMDMMVYVWTLSDPETKVKIQASISSETPLDMSFKAPKQSLVHINPYSILRIGAIFLWEGGSSVGEITAHNKVINCVDIKQSRPYRPATGSDDNCSILRGGPPFKFKLTIGVVLLKDQKKCFSIDNPGYEPEVVAVHPGGDTVAVGSSDGKVRVYSILGSTLKNEGKLLEAKGPVTDLAYSHDGAFLAVCDASKVVTVFSVADDYSENNVFYGHHAKIVCLAWSPDNEHFASGGMDMMVYVWTLSDPETKVKIQGLEPSSYGRVALLWVRSQHTTKSSTVWTSSRAGPTDQPLGVMITAAFFEGALLSNSS", "length": 621, "header": "tr|A0A9J7K4F2-1|A0A9J7K4F2_CRIGR Isoform 1 of WD repeat-containing protein 1-like OS=Cricetulus griseus OX=10029 GN=LOC113832249 PE=3 SV=1 CANONICAL=A0A9J7K4F2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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indels ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035297487", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035297487" } ] }, { "annotation": "Catalyzes the reversible oxidation of 3-phospho-D-glycerate to 3-phosphonooxypyruvate, the first step of the phosphorylated L-serine biosynthesis pathway. Does not catalyze the reversible oxidation of 2-hydroxyglutarate to 2-oxoglutarate and the reversible oxidation of (S)-malate to oxaloacetate.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K4P9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4P9#function" }, { "database": "UniProtKB", "id": "ARBA00057063", "url": "https://www.uniprot.org/uniprotkb/ARBA00057063#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K4P9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4P9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100767881", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4P9", "locus": {} } ], "crossref": [ { "id": "cd12173", "url": 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"MDSAALAALPVTFAPRAWGGGREETLHSFPMEEGRSAVTRVLARVRVPEQLIRRPAPAIAFTDLCKVLSTDSLDPCCQKILQDGGLRVVEKQNLSKEELMAEPKNSEGLIVPSATKVPADVINTAEKLQVVGRAGTDTDNVDMEAAMRKSILVMRCPNGNSLSAEELTCGMIMCLARQIPQATASMKHGKRDQKKFMGTELNRKTLGILGLGRIGREVAXMQSFGIKTVGYDPSISLEVAASFGVQQLPLEEIWPLSEFVTVHTPLLPSTTGLLNDGTFAQCKKGVQVVNSARGGIVDEGALQSCQRAGAELNVFTEQPSWDWALVAHKDVMSCPPLEASTKEAQSHCGWEITAPFVGMVKGKSLTGMVNAPALTSAFFPHTKPWIGLAEVLGTLMHAWAGSPKGTIQVVTQGTSLKNAGTCLSPTVIIGXLREASKQADVSLVNTKLLVKEAGLNVTTSHSPVVPGEQGSGESLLTVALAGAPYQAVGLVQGTIVMLQVFNGAVFRPEVPXPLLRFWDQPSNLVMLPTVTGLLAEAGVQLLSNQTPKVSDGETWHFMGLSSLLPSLEAWKQHVSEAFQFCF", "length": 582, "header": "tr|A0A9J7K4P9-1|A0A9J7K4P9_CRIGR Isoform 1 of LOW QUALITY PROTEIN: D-3-phosphoglycerate dehydrogenase-like OS=Cricetulus griseus OX=10029 GN=LOC100767881 PE=3 SV=1 CANONICAL=A0A9J7K4P9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K4P9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4P9/entry", "sequence": { "sequence": 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K4P9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4P9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100767881", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767881", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "NAD binding", "id": "GO:0051287", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051287", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K4P9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4P9" } ], "pmid": "" }, { "name": "phosphoglycerate dehydrogenase activity", "id": "GO:0004617", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004617", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K4P9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4P9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 456, "end_pos": 458, "annotation": "n_glycosylation_sequon" }, { "start_pos": 544, "end_pos": 546, "annotation": "n_glycosylation_sequon" }, { "start_pos": 93, "end_pos": 95, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7K4P9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4P9" }, { "id": "PF19304", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19304" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "D-3-phosphoglycerate dehydrogenase ASB", "eco_id": "ECO_0000259", "start_pos": 383, "end_pos": 462, "start_aa": "Lys", "end_aa": "Ser", "glycosite_overlap": 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"http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16026:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07593", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07593", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07645", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07645", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13517", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13517", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035297718", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035297718", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GSV8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GSV8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GSV8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GSV8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K4W9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4W9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K4W9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4W9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K6E1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K6E1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K6E1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K6E1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFRMALLLLPLWLLPLTGGSQRAEPMFTAVTNSVLPPDYDSNPTQLNYGVAVTDVDHDGDFEIVVAGYNGPNLVLKYNRAQKRLVNIAVDERSSPYYALRDRQGNAIGVTACDIDGDGREEIYFLNTNNAFSGVATYTDKLFKFRNNRWEDVLSDDVNVARGVASLFAGRSVACVDRTGSGRYSIYIANYAHGDVGPDALIEMDPEASDLSRGILALRDVAAEAGVSKYTAGRGISVGPILSNSASDIFCDNENGPNFLFHNQGNGTFVDAAASAGVDDPHQHGRGVALADFNRDGKVDIVYGNWNGPHRLYLQMSAHGKVRFRDIASPKFSMPSPVRTVIVADFDNDQELEVFFNNIAYRSSAANRLFRVIRREHGDPLIEELNPGDALEPEGRGTGGVVTDFDGDGMLDLILSHGESMAQPLSVFRGNQGFSNNWLRVVPRTRFGAFARGAKVILYTKKSGAHLRIIDGGSGYLCEMEPVAHFGLGKDEASSVEVTWPDGKMVSRSVAREEMNSVLEILYPRDENKLQDTAPLECGQGFSQQDNGHCMDTNECIQFPFVCPRDKPVCVNTYGSYRCRTNKRCSRGYEPNEDGTACVGTLGQSPGPRPTPASAAAAAAAATAAAATGTAAAAPVLVDGDLDLG", "length": 644, "header": "tr|A0A9J7K6E1-1|A0A9J7K6E1_CRIGR Isoform 1 of Cartilage acidic protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Crtac1 PE=4 SV=1 CANONICAL=A0A9J7K6E1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GSV8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GSV8/entry", "sequence": { "sequence": "MFRMALLLLPLWLLPLTGGSQRAEPMFTAVTNSVLPPDYDSNPTQLNYGVAVTDVDHDGDFEIVVAGYNGPNLVLKYNRAQKRLVNIAVDERSSPYYALRDRQGNAIGVTACDIDGDGREEIYFLNTNNAFSGVATYTDKLFKFRNNRWEDVLSDDVNVARGVASLFAGRSVACVDRTGSGRYSIYIANYAHGDVGPDALIEMDPEASDLSRGILALRDVAAEAGVSKYTAGRGISVGPILSNSASDIFCDNENGPNFLFHNQGNGTFVDAAASAGVDDPHQHGRGVALADFNRDGKVDIVYGNWNGPHRLYLQMSAHGKVRFRDIASPKFSMPSPVRTVIVADFDNDQELEVFFNNIAYRSSAANRLFRVIRREHGDPLIEELNPGDALEPEGRGTGGVVTDFDGDGMLDLILSHGESMAQPLSVFRGNQGFSNNWLRVVPRTRFGAFARGAKVILYTKKSGAHLRIIDGGSGYLCEMEPVAHFGLGKDEASSVEVTWPDGKMVSRSVAREEMNSVLEILYPRDENKLQDTAPLECGQGFSQQDNGHCMDTNECIQFPFVCPRDKPVCVNTYGSYRCRTNKRCSRGYEPNEDGTACVGLGLCLQLYAL", "length": 609, "header": "tr|A0A9J7GSV8-1|A0A9J7GSV8_CRIGR Computationally mapped isoform of Cartilage acidic protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Crtac1 PE=4 SV=1 CANONICAL=A0A9J7K6E1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K4W9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4W9/entry", "sequence": { "sequence": "MFRMALLLLPLWLLPLTGGSQRAEPMFTAVTNSVLPPDYDSNPTQLNYGVAVTDVDHDGDFEIVVAGYNGPNLVLKYNRAQKRLVNIAVDERSSPYYALRDRQGNAIGVTACDIDGDGREEIYFLNTNNAFSGVATYTDKLFKFRNNRWEDVLSDDVNVARGVASLFAGRSVACVDRTGSGRYSIYIANYAHGDVGPDALIEMDPEASDLSRGILALRDVAAEAGVSKYTAGRGISVGPILSNSASDIFCDNENGPNFLFHNQGNGTFVDAAASAGVDDPHQHGRGVALADFNRDGKVDIVYGNWNGPHRLYLQMSAHGKVRFRDIASPKFSMPSPVRTVIVADFDNDQELEVFFNNIAYRSSAANRLFRVIRREHGDPLIEELNPGDALEPEGRGTGGVVTDFDGDGMLDLILSHGESMAQPLSVFRGNQGFSNNWLRVVPRTRFGAFARGAKVILYTKKSGAHLRIIDGGSGYLCEMEPVAHFGLGKDEASSVEVTWPDGKMVSRSVAREEMNSVLEILYPRDENKLQDTAPLECGQGFSQQDNGHCMDTNECIQFPFVCPRDKPVCVNTYGSYRCRTNKRCSRGYEPNEDGTACVAQVAFLGGYSSAAFRISEPLSQASYLPLGLGLCLQLYAL", "length": 637, "header": "tr|A0A9J7K4W9-1|A0A9J7K6E1_CRIGR Computationally mapped isoform of Cartilage acidic protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Crtac1 PE=4 SV=1 CANONICAL=A0A9J7K6E1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K6E1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K6E1/entry", "sequence": { "sequence": "MFRMALLLLPLWLLPLTGGSQRAEPMFTAVTNSVLPPDYDSNPTQLNYGVAVTDVDHDGDFEIVVAGYNGPNLVLKYNRAQKRLVNIAVDERSSPYYALRDRQGNAIGVTACDIDGDGREEIYFLNTNNAFSGVATYTDKLFKFRNNRWEDVLSDDVNVARGVASLFAGRSVACVDRTGSGRYSIYIANYAHGDVGPDALIEMDPEASDLSRGILALRDVAAEAGVSKYTAGRGISVGPILSNSASDIFCDNENGPNFLFHNQGNGTFVDAAASAGVDDPHQHGRGVALADFNRDGKVDIVYGNWNGPHRLYLQMSAHGKVRFRDIASPKFSMPSPVRTVIVADFDNDQELEVFFNNIAYRSSAANRLFRVIRREHGDPLIEELNPGDALEPEGRGTGGVVTDFDGDGMLDLILSHGESMAQPLSVFRGNQGFSNNWLRVVPRTRFGAFARGAKVILYTKKSGAHLRIIDGGSGYLCEMEPVAHFGLGKDEASSVEVTWPDGKMVSRSVAREEMNSVLEILYPRDENKLQDTAPLECGQGFSQQDNGHCMDTNECIQFPFVCPRDKPVCVNTYGSYRCRTNKRCSRGYEPNEDGTACVGTLGQSPGPRPTPASAAAAAAAATAAAATGTAAAAPVLVDGDLDLG", "length": 644, "header": "tr|A0A9J7K6E1-1|A0A9J7K6E1_CRIGR Isoform 1 of Cartilage acidic protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Crtac1 PE=4 SV=1 CANONICAL=A0A9J7K6E1-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 610, "start_aa": "Thr", "end_pos": 610, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr610", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K4W9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4W9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K4W9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4W9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100760959", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760959", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1LQP7-1", "protein_name": "Cartilage acidic protein 1", "gene_name": "Crtac1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAPSADPGMVRMALLLLPPLWLLPLTGGSQRAEPMFTAVTNSVLPPDYDSNPTQLNYGVAVTDVDHDGDFEIVVAGYNGPNLVLKYNRAQSRLVNIAVDERSSPYYALRDRQGNAIGVTACDIDGDGREEIYFLNTNNAFSGVATYTDKLFKFRNNRWEDILSDDINVARGVASLFAGRSVACVDRMGSGRYSIYIANYAYGDVGPDALIEMDPEASDLSRGILALRDVAAEAGVSKYTAGRGVSVGPILSNSASDIFCDNENGPNFLFHNQGNGTFVDAAASAGVDDPHQHGRGVALADFNRDGKVDIVYGNWNGPHRLYLQMSAHGKVRFRDIASPKFSTPSPVRTVIAADFDNDQELEVFFNNIAYRSSSANRLFRVIRREHGDPLIEELNPGDALEPEGRGTGGVVTDFDGDGMLDLILSHGESMAQPLSVFRGNQGFSNNWLRVVPRTRFGAFARGAKVVLYTKKSGAHLRIIDGGSGYLCEMEPVAHFGLGRDEASSVEVTWPDGKMLSRSVANREMNSVLEILYPRDEDKLQNTAPLECGQGFSQQDNGHCMDTNECIQFPFVCPRDKPVCVNTYGSYRCRTNKRCSRGYEPNEDGTACVAQVAFLGGYSSAAFRLSEPLSQASYLSLGLGLCLQFYAL", "length": 646 }, "evidence": [ { "id": "A0A9J7K6E1", "url": "https://omabrowser.org/oma/group/A0A9J7K6E1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8R555-1", "protein_name": "Cartilage acidic protein 1", "gene_name": "Crtac1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAPSADPGMVRMALLLLPPLWLLPLTGGSQRAEPMFTAVTNSVLPPDYDSNPTQLNYGVAVTDVDHDGDFEIVVAGYTGPNLVLKYNRAQNRLVNIAVDERSSPYYALRDRQGNAIGVTACDIDGDGREEIYFLNTNNAFSGVATYTDKLFKFRNNRWEDILSDDVNVARGVASLFAGRSVACVDRTGSGRYSIYIANYAYGDVGPDALIEMDPEASDLSRGILALRDVAAEAGVSKYTAGRGVSVGPILSSSASDIFCDNENGPNFLFHNQGNGTFVDTAASAGVDDPHQHGRGVALADFNRDGKVDIVYGNWNGPHRLYLQMSAHGKVRFRDIASPKFSTPSPVRTVIAADFDNDQELEVFFNNIAYRSSSANRLFRVIRREHGDPLIEELNPGDALEPEGRGTGGVVTDFDGDGMLDLILSHGESMAQPLSVFRGNQGFSNNWLRVVPRTRFGAFARGAKVVLYTKKSGAHLRIIDGGSGYLCEMEPVAHFGLGRDEASSVEVTWPDGKMVSRSVASEEMNSVLEILYPQDEDKLQNTAPLECGQGFSQQDNGHCMDTNECIQFPFVCPRDKPVCVNTYGSYRCRTNKRCNRGYEPNEDGTACVAQVAFLGGYSSAAFRLSEPLSQASYLSLGLGLCLQLYAL", "length": 646 }, "evidence": [ { "id": "A0A9J7K6E1", "url": "https://omabrowser.org/oma/group/A0A9J7K6E1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NQ79-1", "protein_name": "Cartilage acidic protein 1", "gene_name": "CRTAC1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAPSADPGMSRMLPFLLLLWFLPITEGSQRAEPMFTAVTNSVLPPDYDSNPTQLNYGVAVTDVDHDGDFEIVVAGYNGPNLVLKYDRAQKRLVNIAVDERSSPYYALRDRQGNAIGVTACDIDGDGREEIYFLNTNNAFSGVATYTDKLFKFRNNRWEDILSDEVNVARGVASLFAGRSVACVDRKGSGRYSIYIANYAYGNVGPDALIEMDPEASDLSRGILALRDVAAEAGVSKYTGGRGVSVGPILSSSASDIFCDNENGPNFLFHNRGDGTFVDAAASAGVDDPHQHGRGVALADFNRDGKVDIVYGNWNGPHRLYLQMSTHGKVRFRDIASPKFSMPSPVRTVITADFDNDQELEIFFNNIAYRSSSANRLFRVIRREHGDPLIEELNPGDALEPEGRGTGGVVTDFDGDGMLDLILSHGESMAQPLSVFRGNQGFNNNWLRVVPRTRFGAFARGAKVVLYTKKSGAHLRIIDGGSGYLCEMEPVAHFGLGKDEASSVEVTWPDGKMVSRNVASGEMNSVLEILYPRDEDTLQDPAPLECGQGFSQQENGHCMDTNECIQFPFVCPRDKPVCVNTYGSYRCRTNKKCSRGYEPNEDGTACVGTLGQSPGPRPTTPTAAAATAAAAAAAGAATAAPVLVDGDLNLGSVVKESCEPSC", "length": 661 }, "evidence": [ { "id": "A0A9J7K6E1", "url": "https://omabrowser.org/oma/group/A0A9J7K6E1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K6E1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K6E1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "axonal fasciculation", "id": "GO:0007413", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007413", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K6E1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K6E1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 265, "end_pos": 267, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7K6E1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K6E1" }, { "id": "SM00179", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00179" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EGF-like calcium-binding", "eco_id": "ECO_0000259", "start_pos": 551, "end_pos": 598, "start_aa": "Asp", "end_aa": "Val", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 610 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 265, "end_pos": 267 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7K4Y4-1", "uniprot_ac": "A0A9J7K4Y4", "uniprot_id": "A0A9J7K4Y4_CRIGR", "mass": { "chemical_mass": 41797.0, "monoisotopic_mass": 41797.0 }, "refseq": { "ac": "XP_035295799", "name": "rho guanine nucleotide exchange factor 39 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295799" }, "gene_names": [ { "name": "Arhgef39", "type": "recommended", "evidence": [ { "id": "A0A9J7K4Y4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4Y4" } ] }, { "name": "Arhgef39", "type": "synonym", "evidence": [ { "id": "XP_035295799", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295799" } ] } ], "protein_names": [ { "name": "Rho guanine nucleotide exchange factor 39 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7K4Y4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4Y4/entry#names_and_taxonomy" } ] }, { "name": "rho guanine nucleotide exchange factor 39 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035295799", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295799" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035295799", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295799" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K4Y4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4Y4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Arhgef39", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4Y4", "locus": {} } ], "crossref": [ { "id": "A0A9J7K4Y4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K4Y4", "database": "AlphaFoldDB", "categories": [] }, { "id": "100773515", "url": "https://www.ncbi.nlm.nih.gov/gene/100773515", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": 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"MESPGSVSRCPVRQQRARWERKRVCTARELLETERRYQEQLGLVATYFLGILKAKGTLRPPERQTLFGTWERIYAASLELLPYLEEGHWGPGLEGFCSHLELYTQFAANAESAQTTLQKLLKKNKRFRRFVQLQEGRPEFKGLQLQDLLPLPLQRLQQYENLIVALAENTVPNSPDYQQLTRAARRVSEAAQRVHAIGQSQKNDQHLLRVQALLSGRKAKGLTSGRWFLRQGWLLVVPPTGEPRPRMFFLFSDVLLMAKPRPPLYLLKSGTFVCKALYPMSQCQLNRVFGHSGGTCGGLLSVSCIWEIWAPNILQALTDQRYHLTWVPFHESKGIVGAKVSYLVIISSLNSQRGIWGEWGLQPDLF", "length": 366, "header": "tr|A0A9J7K4Y4-1|A0A9J7K4Y4_CRIGR Isoform 1 of Rho guanine nucleotide exchange factor 39 isoform X2 OS=Cricetulus griseus OX=10029 GN=Arhgef39 PE=4 SV=1 CANONICAL=A0A9J7K4Y4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276808.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309568", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309568" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K4Z5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4Z5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113838045", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4Z5", "locus": {} } ], "crossref": [ { "id": "A0A9J7K4Z5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K4Z5", "database": "AlphaFoldDB", "categories": [] }, { "id": "113838045", "url": "https://www.ncbi.nlm.nih.gov/gene/113838045", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": 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This record is derived from a genomic sequence (NW_023276889.1) annotated using gene prediction method: Gnomon. 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Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023277432.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309826", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309826" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K556", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K556" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113838011", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K556", "locus": {} } ], "crossref": [ { "id": "A0A9J7K556", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K556", "database": "AlphaFoldDB", "categories": [] }, { "id": "113838011", "url": "https://www.ncbi.nlm.nih.gov/gene/113838011", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": 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} ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7K564-1", "uniprot_ac": "A0A9J7K564", "uniprot_id": "A0A9J7K564_CRIGR", "mass": { "chemical_mass": 916065.0, "monoisotopic_mass": 916065.0 }, "refseq": { "ac": "XP_035300089", "name": "mucin-16-like isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300089" }, "gene_names": [ { "name": "LOC113835255", "type": "recommended", "evidence": [ { "id": "A0A9J7K564", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K564" } ] }, { "name": "LOC113835255", "type": "synonym", "evidence": [ { "id": "XP_035300089", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300089" } ] } ], "protein_names": [ { "name": "Mucin-16-like isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7K564", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K564/entry#names_and_taxonomy" } ] }, { "name": "mucin-16-like isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035300089", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300089" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 30% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035300089", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300089" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K564", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K564" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113835255", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K564", "locus": {} } ], "crossref": [ { "id": "113835255", "url": "https://www.ncbi.nlm.nih.gov/gene/113835255", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000082", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000082", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028850", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028850", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036364", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036364", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113835255", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113835255", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K564", "url": "https://www.orthodb.org/?gene=A0A9J7K564", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14672", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14672", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14672:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14672:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01390", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01390", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035300089", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300089", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K564", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K564", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K564-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K564-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGISLLPALRAVLTTLVYAVIKQHAASLEMCSLPWPAASSTLQEPHSSTGSMASVLRATPKTSTRIWDTSTAVTTSTLYWRSSIPSNLSTLKGTRNSQKAVNIMEATSSAPHISSESVVPKITLSALIPEATGKSTVSISVNSSNSTSIDTHNVAQLNSTLLSDTSTTVTMVETHMPEVISTTEHNPSPTKVSFNNSVIVSPVSVTSVFTVSKDPIPTRLLTTSGSVTLSKPSSNNAQLSKISQTTSVSSLTPENSMEDGTYTTHNQPIIIPTSVLPEKESFTTILSTIEHTRHSPSQPISSESTKIETGTVSSSRTALTDFSTSEDINSTTKHSPSHSELFTIPYLFESRTSTTSADSTSLSTPNQSTSEDTSTGISTSLPTSTISAEIEEMAIPMGHSPVTSDILTYPDTSSTTSVKDIHSSGMHTFPGSESMVPFNSPASASWTLTSGKGSLSANSTTTPVVVSRAPDASLPESHRSYSPNSDASVSTVAKNPISKGLSPISGPVSSSNHSLSRSFQTNFYTALISKISQTTSVSSVTTKSIVEDSSTLHQQKHINTPTAVLSENELLVTILPSLEGTTLPTSQLSPSENDILTQRTNSLTKAQEKHRTYEEVYSITEKNPGHNEVHTISSLLEPQTAAVFEQSTSISMFHHSTSEGTSTGTSTRFPRPTTTTESEETVATHRGNLVMTSNVVTSESISTTASNRETQHPGTQAFLLSESIGHSASPPSPSWTHSTWKESRSASSTRPIPEAPSHSSVPANGDKYSVSSPASVTSVFTVAKDPIPTRLLTTSGSVTLSIPSSNNTQLSKISQTTSVSSLTPENSMEDGTYTTHNQPIIIPTSVLPEKESFTTILSTMEHTRYSPSQPISSESTKIETGTVSSSRTALTDFSTSEDINSTTKHSPRHRELLTIPSIFESRTSTTSADSTSLSAPNQSTSEDTSTGTSTSLPTSTISAETEEMAIPMGHSPVTSDILTYPDTSSTISVKDIHSSGMHTFPGSEPMVPFNSPSSASWTLTPGKGSMSANSTPSGSVSLAPDASLTERHSSHSPESVASVFPVTRDLFPTASHTSSDPVTAYIPSWSSISQPRSNIGHYSQTSQMNKLSSITPGSKMEARSSGPQFKYTIIPTSVSSENKAAFPTTLPTTQVSTPSPTQSASLDYENIGTQTFTPLTTLTQANIPEVYSSTDFTSSHSQMSYSSSLPVSRTVSMSPDNTTLPTLQQFTPDDTSSGTTRLYGSNITESEELSISKIGDSKVTSNMVLSLEASPMLSVSGNLTSFSPTPLVTETSTFLSQSYEVPSIASFPAWKESQLSISPGYLHRPALPSPVLSTVEHSTPSPSSVVSAFTTSREAITTELGIHDLSTSFPDWSSSIHSSQETSQVTKFSQTSSASSFKAEAIMEASTPIPKSKFSISESTATDRISTKNPPYFSASEDITTGSIPRRMKEDLNTIFEAGNSGSLLYEKLSRDTATTITMTEFASPEHQTPPHLALISEPNSSAEQSHVSSLPKEKHTSSDSTSIVTEKTTPSPVTSTSQAQNVSSLDFLSALVTSIQDTTSTGKDKNVVSESISIRGGDATGLSTPSPSYDIRNLKTSHIFSKTPASRVETNSPRVHSQGTILDNSFLSRITTIIMTSQNNGDVTLSTPTFLSESAHSETQKAFPLTSVKQEFTMPEDINLMTKSSSDLFTVPTRISTGLSRTEANSTDRLSVSSSASFTKTTDISMGNTPNISTLSVPNIDISQVINATESSKITTLWNTSGTTAGTQVLSTVTQTVLHPDSMLLPSSSESLSWTDSPSHEATSSVNSEELHQTTSHFPATSTSERQSLSSPASVASTFSSKETTTKDTNLASLTTLFPSWRNSELVTSKDIRTSQTSHMFTKTEITSVDITTPGPQFQNTVSSDPVSPDGTASSLLISPTKTLPSSASSLSPQSSISTSLPEMSFATSEFSKTTDTLNRSLETGTSLPPNLSSNSLEILGLPEVTTDTEKFNSSSKYKVTSMKTVSTGHELRSSVPTLPESSRDTSSYIWVTSMSTSLPAYLETTRSDSEQFSHLTSGLRDTSMSLQTNRPSAPVSTLILPKSETTVTAAMNISSPLQTASSKFTEIPVETVTILLPSSATAESTMATSFSESNFMIPSPKSTRVPRTNILPSDETTFIDTTTLSPTEELASFATTSISKGNSAVTSSSPHSIIQSSHVDVLVSTIAEKLPSSTSTPLPFSDSTSTDFTASTVLHGITPSETEDGIQSYTEMPDGVTHGDAAGLGKGPLASTSFDSPKELSTEGSAEDDTTTTALKASSIATSTTKISTTTSKPLTHFKTAEKTGNINTTKMIITASDASHNVLGITASFSTGSGENTTMVLSTRPPSYSKEPESTAPWSPSLRTETSQVVYPLPISSGESDTVSLVTHPLEITSAIARITQNASQDESDSMVSTATTPRGEVSSAISAAAATATAATAVSPVIPDLVTFLISMPEESTILLFPTLTDSLSETETTGSGVTKTGTDVHSAIPTVHFSSGEPKTTQVLMTTPDVSHTISDSIPSVATSSETEAKSDSSTYDISPNVSEVLTSPVTTFRTVTSTDIPILTLSSDKPETGVSMITHTGVEETSFLPTTTASSGILGIVTSLVPSSEIYTSTVSPTITRYSQELEKTTSQVTLYATSEDSSSVTILTTLPSEAGASASFVTNPEETSPGVPRTGPTFSHIESHTTPKKTITIEQEDIPSVPNIAISTSILNMITLVGQGSEEDVRTSKPILSFQPSEAHTKISLISHSGEKTSSPTSTISDSPGVTEIMRPLFTSSETHIGTRNQTISPGQPETTTSWTMNPGIEVTSRALPTTISPNVLDILASKSVSQAPKLQTTISLVMDAGEEDSSAMSTLTDFPSTTKEATSLVTNLGSESHATSTLTFPPGQPETTISSMNKLEKEVTSRVLMTNSKLSAPDMMTPTILSHTPSEPQTITSLVTHAGGQLDLSMSTQDASSGITEITPPLFTSFGTESYAMTTTLAVSPGRPEITVPWATHPGREGTSGVLSTTISPSVLEMVTAPILIPSEPYTAVSLVTDIEEQPSSAMTARPVSSGITEMIPSLVTSYGTENHPVASTLAVSPSQTETTAPWVTHPRKEDTSGVVTSAIPPSAPGMMTSTSMNHIFSEPQNTTSLDIHAGRQHTLDMNNMTVTQVMTEITSHVKSSGTESHAVPTIIALSPIQPEATALGVTHSRTEGTSRVLSTTISSSVPEMMTKTTIIPSEPHTAVSLVTKIGEEPSSSMFTRPISESITQMIPLLLTSYSTERHPMSPTLDVSPSQPETTDLLLTHPGKAATSGVLTTTISTDAPEMITSTNLIPSKPHTTLSLVTHIEKPPSSAMSTRPVSPGITEMIPSLVTSSGTESHSVASTLTVSPDQSGSTDSWLTHLGKEGTSEILSTTISPDVPDIMTSITMNYIPSEPQTTASFITYAGRHPISSLSTQAVSSGVTETMTSQSSSSSTVTHETSPAVFVTPVQSESTASWTTHAERETNSGVLNTTVSVSVPDLVTSTALIPSEPHSTVSFVTHTGEQPNSTIPILAISPVITKVTPSLVPSSGTKNISAATTLAVSTNQPETTGSWATHSVKAIASDIITTTKLPSAPENITVTSLASTPSETQTIIPEVTHAEAQPSLSISNLAVLSGVTEVMTSHVSTTKTNKTSPAVFVFTGQTDNTDSWTAHAEREKIAGVLNTTISTSVPDLLNDTTLISSEPHSTVSFATHIGEQFNSAMPTMAVPPGIKEMILSLVTKSTTKNNLAATTLEVSTEQTGTTTLWVTHAGNEGASGDLSRATSPSVSDTTSTTLNHTVSETQTITSLVTPGSGHPSSSMNSQSVSSGVTEMTPSLVTSLGTGSYAITSTLDVSIGLPETTASSFIPPERETMSGVPNTTITTGITEMMTATTLIPPESYNTVSLVTHIEEQPSSTLSIRPVSLGITEMIQSLVTSSSTESHPVTSDLSVSPGQAGTTALVTHPGKKDTSRVPSTTFSSSVLEMKTSPMLISAEAHTTMPLNTHVGGQPSSAMSTRPVSSGITEMIPSWVTSSDIESHSMISTMTVSTDHPETTAPLNTHHGKEGSSMDLSTTISSNVPDMITSTSLNQTASELQTVTSLVTHVGGHPSSFISTQVVSSGVTEMTPSLLTSLGTGRYAITSALDVSIGQPETTAPLVPHPEKEATSGVPNTTITTGVTEMMTTTTLIPSEPHNTLSLDTHIEGQPNSMSTWPVSPGITEMVQSLVTSPSPENNFMTSNVGVSPNQPGTTAPGVNHPEKEGISGILSTNISSSIPEMMTSPSQSLASGEPYTTVSLVTHIEGQPSSAMSTKPVSLGLAEIISPFVTSSSTENHSVTTTVTLSPDQPGTTGSWVTHPGTKSTSEIVSSTVSPAVPDIMTSTTLNRTVSEEKTTSLVTYDGGHHTLSMSTHGFSSGVTKMMTTWATSSSTVKHKTSPAVFVTPVQSESTASWTTHAERETNSGVLNTTVSVSVPDLVTSKTLISSEPHSTVSFVTHTGEQPNSTIPILAISPVITKVTPSLVPISGTKNISTAITLEVSTDQPETTGSWVTHSVKAVASDIVTTVMPPSSTENITTMSLTSTPSEPQTITSLVTHHSGHPSSSMSIQVVSSGVTEMMTSQTTTTGTSAHETSPDLLVSPGQTETTFSLTTHSKREETASVLNNTISPSVPELLNATTLITSEPHSTISFATHTGEQLNSSMPTLDASPGITEMMSSLGTSYDAENHSTLEVSRDHQGTIAPLVTHPGKEGSSVDLSTTISPNVPDITTTSLTSTTSEPQTTISLITHVGGHPSSSISTQVVSSGVTEMTPSLVTSLGTGRYATTSTLDVSIGQPKTTAALVPHPEREATSGVPTTTITTGVTEMMATTTLIPSQPHNTISMITHIEGQPSSTLSTRPVSLGVSEMTQSLVTISSTESHPVTSTVGVYPDQPKTTEPSINHPEKEGASGNLSTTISPSVPDMMTSTSLNPTPSEPQTITSLVTHHGGHPSSSMSTLSVSSGVTEMMISQATSTGTAAHETTPDLRVSPGQTETTVSWTTHAEREETAGVLNTTISTSAPNLFNATTLIPSEPHSTISFVTHIGEQPNSAMPTLFASPGNTEMVLSLGTSTVAENHSTLEVSRDHPGTIAPLVSHPGKEGSSGDLFTTILPSVLDMMTSITLKHTPSEPQTITSLVTNAGGHPSSSMSTQSVSSGITEMEPSLLTSLSTGSYAITSTLDVSIGQPETTVALVTHPEKETMSGVPNTTITTVVTEMMTTTTLIPSEPLTKISFVTSAVGDTNLDLSTMTVSPSITEIMTSQVTTSGTETHETPPVLFVSPGEKEITTPWVTHIERETTSGSPTTTISTNVPDMITSPTLIPSEPHTTISLVTDIGEHLISTTISPSVQEMVTAPTPIPSELHTAVSLVTDIEEQPSSAMTARPVSSGITEMIPSLVTSYGIENHPVSSTFAVSPSQTETTAPWVTHPRKEDTSGAVTSAIPPSAPGMMTSTSMNHTTSEAQTIALVTHAEGQPTLSTTSLDVSSHVTETISPLVTSPGVPEMMISPNSISSEAHTTISVVTHIAGQPSSTMSTTPVSPHVTETRPSLVTSSHMESDSVSSILAISPSQRETPVSWVTPRVTEATSSIPRTSISPSVTDLMASPTFFPSEPHTTMSLVSHVEEQSSSAMSTSPVPPSITEMMTSLATTSEPETHSASVTLAVSNQTETTASWVSHPGNESMSTISTLSTFFEPKRTETWLTLSSKPNTPLSTITPTFSYSESDITPSASRAESTSATTFSSGASEETASLSIHSGTETSTTPPLVSAGTTGLWAPIPSTESTLTMSPSVPGFPGVATTSKFSNATLQTTETSASVTTVRFSNFVSDSTSPVMTLISSESSTSLLIDLETTSETSHLATTSSRPTEAKTTTTLHGSPFAPVTTSRMSTRSSENVTSRPSTSPSLELFTVNFTITNLRHTEGMGSQGSEIFNRTERILNLLLKPMFKNTSIGHLYSGCRLILLRPENDGTATRVDAVCTHHSDPMGFKLDREKLYWELSHNTHGVTKLGSFTLEKDSLYINDFTHQTSAPTPNTPVTSSLFFPGTSTTQSNPSTVVTPVLAQFTLNFTITNLEFKEDMLYYGSRNFNTLDRVLQHLLKPLFKTSSLGSLFSSCTLMSLRSKEDGTATRVDAICTYHPDPKGHRLDREQLYWEMNRLTHGVTRLGPYTLDRNSLYVDGFTHQSSALITSSEYSIDVSVTPYLIPSKAGAFHESALLFTNESFFVASETTAGNLGIFGTHSFPRTTAMTHSLVPFTLNFTITNVQFTPVMKHPGSLKFNKTEAVLQRLLAAVFKNTTIGPMYSGCQLTLLMPEKDGSATGVNMICTHRSEPTGMGLDPKQLYWELSRETHGITQLDFLTLDRNSLYVNVPVSPLVPFTINFTITNLEYEEGMHHPGSWKFNATERILQRLLWPLFNKTSISLLYSGCKLISLRSEKNGAATGVDAICTHHPDPTASELDNEQVYWELSKLTNDITQLGPYALDKNSLYINGYTHQILPTTSPLSATAGPVLVHFTINFTITNLPFEEDMSHPGSTKFNITERTLQSLLRPLFQKSSVGPLYSGCILTSLRSENDGTGTRVDAVCTHRPDPTGLELDRKMVYSELSRLTYDVSRLGPYTLDKNSLYIAGYTHQILGTTTKTSMMPTAFTVMTANSPSSTVAGPTPLTFTINFTVTNLEYVKEMGHPGSRKFNATERTLQRLLRALFSKTSLGPLYSGCRLTLLRPENNGAATAVDAICTYHSNTSNRGLDREHVYWELKRVNDGIMQLGPYTLDQNSLYVNGYTQQSLATTHMTFLVATVSEGMPNTSSIHTVTSPVPLPFIINFTIINLEFEKDMGHPGSRKFNITERTLQSLLRPLFNKTSMGLMYSGCRLTLLRPEKHGAATGVDATCTYHLDPTGHRLEDEQIYRELSSLTQGVTQLGPYFLDQNSLYVNGYTHQILATTPRTSSSAQLLFTLNFTITNLPYTEDMWVPGYAKFNKAEKALQLLLKPLFQNTSVGLIYSGCRLTSLRPKNNGEATRVDMVCTYLPNSTGTDLDREQLYSELEQLTHNITRLGHYALDQNSFYVNGYTHQIAVTSNSKSPLVLFTLNFTIINLFYEGNMQLPGSRKFNATEKILQSLLGPLFRYTSIGPFYTGCKLTLLSPRKNGEATGVDIVCTYHPDHIGHGFATEQLYLELSKLTYGVTQLGPYTLDQDSLYVNGNDTIIVPITLNFTITNLHYTEEMGHPGSLKFNSTRRILHYWFDTVLNKTSIAPQYSGCRLASLRSDSHRTATGVDIICTFHFDPRNPGLDQDQLFWKLSHETHGITRLGPYTLDQNSLYINGYHFGTAAPTTTTGEVSEEMFTVNFTINNLRYSADMGQVGSPKFNITDTLMQHLLGPLFQRSSLGPLYTGCRVATLRSVKNGAQTQVDVLCTYHQVPNSLGLPAKPIFYDLSWQTHGITRLGPYSLDKDSLYINGYNEPGPDVPPTTPEPATTILLSTSPYLQPESNTAVEHHLKTFTINFTISNLPYSENMSYSSAMFNSTESVLQNLLTPLLQNISLNPSCRLTSIRPERNQNSSSVNVICSYQHDSAHPGLHTQELYSKLSHLTHGVTQLGNYTLDKDSLYVNAVGHHLKTITVSLTISNLPYSANMNNDSAVFNSTETLLENLLEQLFKNSSFNSSCRLDSLKPKKNGTATGVDAICAYNHDPEYPWMDIQGLYSELKNLTQGITQLGNYTLDKESLYINTMGHHQQILTINFTITNLPYASNMSNASAVFSTIQSVLQHLLEQLFKNGSFNSSCRLDSLKSKKNGTATGVDAICAYNHDPEHPWMDIQGLYSELKNLSQGITQLGNYTLDKESLYIINTPEPSTTTLPSPSTSLQPETTTAMGHHQQILTINFTITNLPYASNMSNASAVFSSTQSVLQHLLEQLFKNGSFNSSCRLDSLKSKKNGTATGVDAICAYNHDPEHPWMGIQRLYSELKNLTQGITQLGNYTLDKESLYINGYTKPVPEEPPATPEPSTTTLPSLSTSLHPETTTAMGHHQQILTINFTITNLPYASNISNASTVFSSTKSVLQHLLEQLFKNGSFNSSCRLDILKPKKNGTATGVDAICAYKHDPEHPWMDIQELYSKLKNLTQGITQLGNYSLDKDDLFVNGYNEHSAEGFPTIPEPRTTILASPSTSMQTEPTIVMGHLKNFTLNFTISNLPYSAGMSSAMFNSTERILQHLLGPLVQNESIYSDCKLTSLRSKKNGTATGVSVICSYRHNPAYPELDTQELYTKLSQLTHGVTQLGSYMLDQNSLYVNGYTHQIAGTTSSDMKPPILQPTEIPTSSSSQHFNLNFTITNLPYSHDIAQPGTTKHQQNKRSIEYALNQIFRNSSIKSYFSECQVLAFRYVSNSNHTGVDSLCNFSPLARRVDRVAIYEEFLRMTQNGTRLLNFTLDRQSVLVDGYSSSRDDDVMKNYGLPFWAIILICLAVLLILITCLMCCFLVTICRRKKEGDYQVQRHRLGYYLPHLDLRKFP", "length": 8567, "header": "tr|A0A9J7K564-1|A0A9J7K564_CRIGR Isoform 1 of Mucin-16-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC113835255 PE=4 SV=1 CANONICAL=A0A9J7K564-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K564-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K564/entry", "sequence": { "sequence": "MAGISLLPALRAVLTTLVYAVIKQHAASLEMCSLPWPAASSTLQEPHSSTGSMASVLRATPKTSTRIWDTSTAVTTSTLYWRSSIPSNLSTLKGTRNSQKAVNIMEATSSAPHISSESVVPKITLSALIPEATGKSTVSISVNSSNSTSIDTHNVAQLNSTLLSDTSTTVTMVETHMPEVISTTEHNPSPTKVSFNNSVIVSPVSVTSVFTVSKDPIPTRLLTTSGSVTLSKPSSNNAQLSKISQTTSVSSLTPENSMEDGTYTTHNQPIIIPTSVLPEKESFTTILSTIEHTRHSPSQPISSESTKIETGTVSSSRTALTDFSTSEDINSTTKHSPSHSELFTIPYLFESRTSTTSADSTSLSTPNQSTSEDTSTGISTSLPTSTISAEIEEMAIPMGHSPVTSDILTYPDTSSTTSVKDIHSSGMHTFPGSESMVPFNSPASASWTLTSGKGSLSANSTTTPVVVSRAPDASLPESHRSYSPNSDASVSTVAKNPISKGLSPISGPVSSSNHSLSRSFQTNFYTALISKISQTTSVSSVTTKSIVEDSSTLHQQKHINTPTAVLSENELLVTILPSLEGTTLPTSQLSPSENDILTQRTNSLTKAQEKHRTYEEVYSITEKNPGHNEVHTISSLLEPQTAAVFEQSTSISMFHHSTSEGTSTGTSTRFPRPTTTTESEETVATHRGNLVMTSNVVTSESISTTASNRETQHPGTQAFLLSESIGHSASPPSPSWTHSTWKESRSASSTRPIPEAPSHSSVPANGDKYSVSSPASVTSVFTVAKDPIPTRLLTTSGSVTLSIPSSNNTQLSKISQTTSVSSLTPENSMEDGTYTTHNQPIIIPTSVLPEKESFTTILSTMEHTRYSPSQPISSESTKIETGTVSSSRTALTDFSTSEDINSTTKHSPRHRELLTIPSIFESRTSTTSADSTSLSAPNQSTSEDTSTGTSTSLPTSTISAETEEMAIPMGHSPVTSDILTYPDTSSTISVKDIHSSGMHTFPGSEPMVPFNSPSSASWTLTPGKGSMSANSTPSGSVSLAPDASLTERHSSHSPESVASVFPVTRDLFPTASHTSSDPVTAYIPSWSSISQPRSNIGHYSQTSQMNKLSSITPGSKMEARSSGPQFKYTIIPTSVSSENKAAFPTTLPTTQVSTPSPTQSASLDYENIGTQTFTPLTTLTQANIPEVYSSTDFTSSHSQMSYSSSLPVSRTVSMSPDNTTLPTLQQFTPDDTSSGTTRLYGSNITESEELSISKIGDSKVTSNMVLSLEASPMLSVSGNLTSFSPTPLVTETSTFLSQSYEVPSIASFPAWKESQLSISPGYLHRPALPSPVLSTVEHSTPSPSSVVSAFTTSREAITTELGIHDLSTSFPDWSSSIHSSQETSQVTKFSQTSSASSFKAEAIMEASTPIPKSKFSISESTATDRISTKNPPYFSASEDITTGSIPRRMKEDLNTIFEAGNSGSLLYEKLSRDTATTITMTEFASPEHQTPPHLALISEPNSSAEQSHVSSLPKEKHTSSDSTSIVTEKTTPSPVTSTSQAQNVSSLDFLSALVTSIQDTTSTGKDKNVVSESISIRGGDATGLSTPSPSYDIRNLKTSHIFSKTPASRVETNSPRVHSQGTILDNSFLSRITTIIMTSQNNGDVTLSTPTFLSESAHSETQKAFPLTSVKQEFTMPEDINLMTKSSSDLFTVPTRISTGLSRTEANSTDRLSVSSSASFTKTTDISMGNTPNISTLSVPNIDISQVINATESSKITTLWNTSGTTAGTQVLSTVTQTVLHPDSMLLPSSSESLSWTDSPSHEATSSVNSEELHQTTSHFPATSTSERQSLSSPASVASTFSSKETTTKDTNLASLTTLFPSWRNSELVTSKDIRTSQTSHMFTKTEITSVDITTPGPQFQNTVSSDPVSPDGTASSLLISPTKTLPSSASSLSPQSSISTSLPEMSFATSEFSKTTDTLNRSLETGTSLPPNLSSNSLEILGLPEVTTDTEKFNSSSKYKVTSMKTVSTGHELRSSVPTLPESSRDTSSYIWVTSMSTSLPAYLETTRSDSEQFSHLTSGLRDTSMSLQTNRPSAPVSTLILPKSETTVTAAMNISSPLQTASSKFTEIPVETVTILLPSSATAESTMATSFSESNFMIPSPKSTRVPRTNILPSDETTFIDTTTLSPTEELASFATTSISKGNSAVTSSSPHSIIQSSHVDVLVSTIAEKLPSSTSTPLPFSDSTSTDFTASTVLHGITPSETEDGIQSYTEMPDGVTHGDAAGLGKGPLASTSFDSPKELSTEGSAEDDTTTTALKASSIATSTTKISTTTSKPLTHFKTAEKTGNINTTKMIITASDASHNVLGITASFSTGSGENTTMVLSTRPPSYSKEPESTAPWSPSLRTETSQVVYPLPISSGESDTVSLVTHPLEITSAIARITQNASQDESDSMVSTATTPRGEVSSAISAAAATATAATAVSPVIPDLVTFLISMPEESTILLFPTLTDSLSETETTGSGVTKTGTDVHSAIPTVHFSSGEPKTTQVLMTTPDVSHTISDSIPSVATSSETEAKSDSSTYDISPNVSEVLTSPVTTFRTVTSTDIPILTLSSDKPETGVSMITHTGVEETSFLPTTTASSGILGIVTSLVPSSEIYTSTVSPTITRYSQELEKTTSQVTLYATSEDSSSVTILTTLPSEAGASASFVTNPEETSPGVPRTGPTFSHIESHTTPKKTITIEQEDIPSVPNIAISTSILNMITLVGQGSEEDVRTSKPILSFQPSEAHTKISLISHSGEKTSSPTSTISDSPGVTEIMRPLFTSSETHIGTRNQTISPGQPETTTSWTMNPGIEVTSRALPTTISPNVLDILASKSVSQAPKLQTTISLVMDAGEEDSSAMSTLTDFPSTTKEATSLVTNLGSESHATSTLTFPPGQPETTISSMNKLEKEVTSRVLMTNSKLSAPDMMTPTILSHTPSEPQTITSLVTHAGGQLDLSMSTQDASSGITEITPPLFTSFGTESYAMTTTLAVSPGRPEITVPWATHPGREGTSGVLSTTISPSVLEMVTAPILIPSEPYTAVSLVTDIEEQPSSAMTARPVSSGITEMIPSLVTSYGTENHPVASTLAVSPSQTETTAPWVTHPRKEDTSGVVTSAIPPSAPGMMTSTSMNHIFSEPQNTTSLDIHAGRQHTLDMNNMTVTQVMTEITSHVKSSGTESHAVPTIIALSPIQPEATALGVTHSRTEGTSRVLSTTISSSVPEMMTKTTIIPSEPHTAVSLVTKIGEEPSSSMFTRPISESITQMIPLLLTSYSTERHPMSPTLDVSPSQPETTDLLLTHPGKAATSGVLTTTISTDAPEMITSTNLIPSKPHTTLSLVTHIEKPPSSAMSTRPVSPGITEMIPSLVTSSGTESHSVASTLTVSPDQSGSTDSWLTHLGKEGTSEILSTTISPDVPDIMTSITMNYIPSEPQTTASFITYAGRHPISSLSTQAVSSGVTETMTSQSSSSSTVTHETSPAVFVTPVQSESTASWTTHAERETNSGVLNTTVSVSVPDLVTSTALIPSEPHSTVSFVTHTGEQPNSTIPILAISPVITKVTPSLVPSSGTKNISAATTLAVSTNQPETTGSWATHSVKAIASDIITTTKLPSAPENITVTSLASTPSETQTIIPEVTHAEAQPSLSISNLAVLSGVTEVMTSHVSTTKTNKTSPAVFVFTGQTDNTDSWTAHAEREKIAGVLNTTISTSVPDLLNDTTLISSEPHSTVSFATHIGEQFNSAMPTMAVPPGIKEMILSLVTKSTTKNNLAATTLEVSTEQTGTTTLWVTHAGNEGASGDLSRATSPSVSDTTSTTLNHTVSETQTITSLVTPGSGHPSSSMNSQSVSSGVTEMTPSLVTSLGTGSYAITSTLDVSIGLPETTASSFIPPERETMSGVPNTTITTGITEMMTATTLIPPESYNTVSLVTHIEEQPSSTLSIRPVSLGITEMIQSLVTSSSTESHPVTSDLSVSPGQAGTTALVTHPGKKDTSRVPSTTFSSSVLEMKTSPMLISAEAHTTMPLNTHVGGQPSSAMSTRPVSSGITEMIPSWVTSSDIESHSMISTMTVSTDHPETTAPLNTHHGKEGSSMDLSTTISSNVPDMITSTSLNQTASELQTVTSLVTHVGGHPSSFISTQVVSSGVTEMTPSLLTSLGTGRYAITSALDVSIGQPETTAPLVPHPEKEATSGVPNTTITTGVTEMMTTTTLIPSEPHNTLSLDTHIEGQPNSMSTWPVSPGITEMVQSLVTSPSPENNFMTSNVGVSPNQPGTTAPGVNHPEKEGISGILSTNISSSIPEMMTSPSQSLASGEPYTTVSLVTHIEGQPSSAMSTKPVSLGLAEIISPFVTSSSTENHSVTTTVTLSPDQPGTTGSWVTHPGTKSTSEIVSSTVSPAVPDIMTSTTLNRTVSEEKTTSLVTYDGGHHTLSMSTHGFSSGVTKMMTTWATSSSTVKHKTSPAVFVTPVQSESTASWTTHAERETNSGVLNTTVSVSVPDLVTSKTLISSEPHSTVSFVTHTGEQPNSTIPILAISPVITKVTPSLVPISGTKNISTAITLEVSTDQPETTGSWVTHSVKAVASDIVTTVMPPSSTENITTMSLTSTPSEPQTITSLVTHHSGHPSSSMSIQVVSSGVTEMMTSQTTTTGTSAHETSPDLLVSPGQTETTFSLTTHSKREETASVLNNTISPSVPELLNATTLITSEPHSTISFATHTGEQLNSSMPTLDASPGITEMMSSLGTSYDAENHSTLEVSRDHQGTIAPLVTHPGKEGSSVDLSTTISPNVPDITTTSLTSTTSEPQTTISLITHVGGHPSSSISTQVVSSGVTEMTPSLVTSLGTGRYATTSTLDVSIGQPKTTAALVPHPEREATSGVPTTTITTGVTEMMATTTLIPSQPHNTISMITHIEGQPSSTLSTRPVSLGVSEMTQSLVTISSTESHPVTSTVGVYPDQPKTTEPSINHPEKEGASGNLSTTISPSVPDMMTSTSLNPTPSEPQTITSLVTHHGGHPSSSMSTLSVSSGVTEMMISQATSTGTAAHETTPDLRVSPGQTETTVSWTTHAEREETAGVLNTTISTSAPNLFNATTLIPSEPHSTISFVTHIGEQPNSAMPTLFASPGNTEMVLSLGTSTVAENHSTLEVSRDHPGTIAPLVSHPGKEGSSGDLFTTILPSVLDMMTSITLKHTPSEPQTITSLVTNAGGHPSSSMSTQSVSSGITEMEPSLLTSLSTGSYAITSTLDVSIGQPETTVALVTHPEKETMSGVPNTTITTVVTEMMTTTTLIPSEPLTKISFVTSAVGDTNLDLSTMTVSPSITEIMTSQVTTSGTETHETPPVLFVSPGEKEITTPWVTHIERETTSGSPTTTISTNVPDMITSPTLIPSEPHTTISLVTDIGEHLISTTISPSVQEMVTAPTPIPSELHTAVSLVTDIEEQPSSAMTARPVSSGITEMIPSLVTSYGIENHPVSSTFAVSPSQTETTAPWVTHPRKEDTSGAVTSAIPPSAPGMMTSTSMNHTTSEAQTIALVTHAEGQPTLSTTSLDVSSHVTETISPLVTSPGVPEMMISPNSISSEAHTTISVVTHIAGQPSSTMSTTPVSPHVTETRPSLVTSSHMESDSVSSILAISPSQRETPVSWVTPRVTEATSSIPRTSISPSVTDLMASPTFFPSEPHTTMSLVSHVEEQSSSAMSTSPVPPSITEMMTSLATTSEPETHSASVTLAVSNQTETTASWVSHPGNESMSTISTLSTFFEPKRTETWLTLSSKPNTPLSTITPTFSYSESDITPSASRAESTSATTFSSGASEETASLSIHSGTETSTTPPLVSAGTTGLWAPIPSTESTLTMSPSVPGFPGVATTSKFSNATLQTTETSASVTTVRFSNFVSDSTSPVMTLISSESSTSLLIDLETTSETSHLATTSSRPTEAKTTTTLHGSPFAPVTTSRMSTRSSENVTSRPSTSPSLELFTVNFTITNLRHTEGMGSQGSEIFNRTERILNLLLKPMFKNTSIGHLYSGCRLILLRPENDGTATRVDAVCTHHSDPMGFKLDREKLYWELSHNTHGVTKLGSFTLEKDSLYINDFTHQTSAPTPNTPVTSSLFFPGTSTTQSNPSTVVTPVLAQFTLNFTITNLEFKEDMLYYGSRNFNTLDRVLQHLLKPLFKTSSLGSLFSSCTLMSLRSKEDGTATRVDAICTYHPDPKGHRLDREQLYWEMNRLTHGVTRLGPYTLDRNSLYVDGFTHQSSALITSSEYSIDVSVTPYLIPSKAGAFHESALLFTNESFFVASETTAGNLGIFGTHSFPRTTAMTHSLVPFTLNFTITNVQFTPVMKHPGSLKFNKTEAVLQRLLAAVFKNTTIGPMYSGCQLTLLMPEKDGSATGVNMICTHRSEPTGMGLDPKQLYWELSRETHGITQLDFLTLDRNSLYVNVPVSPLVPFTINFTITNLEYEEGMHHPGSWKFNATERILQRLLWPLFNKTSISLLYSGCKLISLRSEKNGAATGVDAICTHHPDPTASELDNEQVYWELSKLTNDITQLGPYALDKNSLYINGYTHQILPTTSPLSATAGPVLVHFTINFTITNLPFEEDMSHPGSTKFNITERTLQSLLRPLFQKSSVGPLYSGCILTSLRSENDGTGTRVDAVCTHRPDPTGLELDRKMVYSELSRLTYDVSRLGPYTLDKNSLYIAGYTHQILGTTTKTSMMPTAFTVMTANSPSSTVAGPTPLTFTINFTVTNLEYVKEMGHPGSRKFNATERTLQRLLRALFSKTSLGPLYSGCRLTLLRPENNGAATAVDAICTYHSNTSNRGLDREHVYWELKRVNDGIMQLGPYTLDQNSLYVNGYTQQSLATTHMTFLVATVSEGMPNTSSIHTVTSPVPLPFIINFTIINLEFEKDMGHPGSRKFNITERTLQSLLRPLFNKTSMGLMYSGCRLTLLRPEKHGAATGVDATCTYHLDPTGHRLEDEQIYRELSSLTQGVTQLGPYFLDQNSLYVNGYTHQILATTPRTSSSAQLLFTLNFTITNLPYTEDMWVPGYAKFNKAEKALQLLLKPLFQNTSVGLIYSGCRLTSLRPKNNGEATRVDMVCTYLPNSTGTDLDREQLYSELEQLTHNITRLGHYALDQNSFYVNGYTHQIAVTSNSKSPLVLFTLNFTIINLFYEGNMQLPGSRKFNATEKILQSLLGPLFRYTSIGPFYTGCKLTLLSPRKNGEATGVDIVCTYHPDHIGHGFATEQLYLELSKLTYGVTQLGPYTLDQDSLYVNGNDTIIVPITLNFTITNLHYTEEMGHPGSLKFNSTRRILHYWFDTVLNKTSIAPQYSGCRLASLRSDSHRTATGVDIICTFHFDPRNPGLDQDQLFWKLSHETHGITRLGPYTLDQNSLYINGYHFGTAAPTTTTGEVSEEMFTVNFTINNLRYSADMGQVGSPKFNITDTLMQHLLGPLFQRSSLGPLYTGCRVATLRSVKNGAQTQVDVLCTYHQVPNSLGLPAKPIFYDLSWQTHGITRLGPYSLDKDSLYINGYNEPGPDVPPTTPEPATTILLSTSPYLQPESNTAVEHHLKTFTINFTISNLPYSENMSYSSAMFNSTESVLQNLLTPLLQNISLNPSCRLTSIRPERNQNSSSVNVICSYQHDSAHPGLHTQELYSKLSHLTHGVTQLGNYTLDKDSLYVNAVGHHLKTITVSLTISNLPYSANMNNDSAVFNSTETLLENLLEQLFKNSSFNSSCRLDSLKPKKNGTATGVDAICAYNHDPEYPWMDIQGLYSELKNLTQGITQLGNYTLDKESLYINTMGHHQQILTINFTITNLPYASNMSNASAVFSTIQSVLQHLLEQLFKNGSFNSSCRLDSLKSKKNGTATGVDAICAYNHDPEHPWMDIQGLYSELKNLSQGITQLGNYTLDKESLYIINTPEPSTTTLPSPSTSLQPETTTAMGHHQQILTINFTITNLPYASNMSNASAVFSSTQSVLQHLLEQLFKNGSFNSSCRLDSLKSKKNGTATGVDAICAYNHDPEHPWMGIQRLYSELKNLTQGITQLGNYTLDKESLYINGYTKPVPEEPPATPEPSTTTLPSLSTSLHPETTTAMGHHQQILTINFTITNLPYASNISNASTVFSSTKSVLQHLLEQLFKNGSFNSSCRLDILKPKKNGTATGVDAICAYKHDPEHPWMDIQELYSKLKNLTQGITQLGNYSLDKDDLFVNGYNEHSAEGFPTIPEPRTTILASPSTSMQTEPTIVMGHLKNFTLNFTISNLPYSAGMSSAMFNSTERILQHLLGPLVQNESIYSDCKLTSLRSKKNGTATGVSVICSYRHNPAYPELDTQELYTKLSQLTHGVTQLGSYMLDQNSLYVNGYTHQIAGTTSSDMKPPILQPTEIPTSSSSQHFNLNFTITNLPYSHDIAQPGTTKHQQNKRSIEYALNQIFRNSSIKSYFSECQVLAFRYVSNSNHTGVDSLCNFSPLARRVDRVAIYEEFLRMTQNGTRLLNFTLDRQSVLVDGYSSSRDDDVMKNYGLPFWAIILICLAVLLILITCLMCCFLVTICRRKKEGDYQVQRHRLGYYLPHLDLRKFP", "length": 8567, "header": "tr|A0A9J7K564-1|A0A9J7K564_CRIGR Isoform 1 of Mucin-16-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC113835255 PE=4 SV=1 CANONICAL=A0A9J7K564-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1032, "start_aa": "Thr", "end_pos": 1032, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1032", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": 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"https://www.ebi.ac.uk/QuickGO/term/GO:0006183", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K575", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K575" } ], "pmid": "" }, { "name": "UTP biosynthetic process", "id": "GO:0006228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006228", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K575", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K575" } ], "pmid": "" }, { "name": "CTP biosynthetic process", "id": "GO:0006241", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006241", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K575", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K575" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 13, "end_pos": 15, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { 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{ "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7K6R7-1", "uniprot_ac": "A0A9J7K6R7", "uniprot_id": "A0A9J7K6R7_CRIGR", "mass": { "chemical_mass": 149427.0, "monoisotopic_mass": 149427.0 }, "refseq": { "ac": "XP_035298142", "name": "von Willebrand factor A domain-containing protein 3A isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035298142" }, "gene_names": [ { "name": "Vwa3a", "type": "recommended", "evidence": [ { "id": "A0A9J7K6R7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K6R7" } ] }, { "name": "Vwa3a", "type": "synonym", "evidence": [ { "id": "XP_035298142", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035298142" } ] } ], "protein_names": [ { "name": "von Willebrand factor A domain-containing protein 3A isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035298142", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035298142" }, { "id": "A0A9J7K6R7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K6R7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035298142", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035298142" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K6R7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K6R7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Vwa3a", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K6R7", "locus": {} } ], "crossref": [ { "id": "cd00198", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00198", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100754479", "url": "https://www.ncbi.nlm.nih.gov/gene/100754479", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002035", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002035", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036465", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036465", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100754479", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754479", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K6R7", "url": "https://www.orthodb.org/?gene=A0A9J7K6R7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46478", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46478", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46478:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46478:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13768", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13768", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035298142", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035298142", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GS33", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GS33", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GS33-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GS33-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GVW0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GVW0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GVW0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GVW0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GW85", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GW85", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GW85-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GW85-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K596", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K596", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K596-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K596-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K6R7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K6R7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K6R7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K6R7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSLSGRRYLRHRQHRQPGLDQHRGVGGSTYCGPRATVSNNPWTRPDLHPSPASPRVGHHLVFYHHGNYFLDCHMWFAGGFPLAKRSYKICSMDSIHWNMDRDSDRDPQKQQNQKAMNALAQNPHNGFLVTHINQTQDLLKLQGSETQASASEDSEDWLSTHSLKFKKLTLADLISQRIVDLEEHDNAMPKVRFSTQTICHFESRLSDTIKLYQQRMQWLTENSKKAFGIIKGARVGLLIDVSQVSSGPQKEFQNDLTSLIDDQLSLKEKMYVLSFGVTAQPLWPDPVEVNTSTLQELKLWVQKLQPEGSSNLLQALKRALAQKELNSVVAVLRNCPDQPSEFLSDYIQQSTVGRDLFIHVITYKCDDHVPSVVLKNLTDALGGYYHCYSPESEFYTNRDVDELLAETQKAQDLLRQVQALCYSSPCEELACMIKKIATEIGKGPFTSLLPKPPKHESPLTIKFPDLDKTSAEWLKVNGLKAKKLSLYQILAPNAFNTVEEFVPILQKRVSAVIHEKAMVQFEWHDGTMKNIHVDPPSLYEYQKQLGKAVQMYESRLRWLSLDSRRIWGTVCERRVVILLDVSVTSSMYIIHIQHSLRLLLEEQLSNKDHFNIVAFGSTVESWRPEIVPMSHDNLQSAWRWVLGLRCQGSRNVLSALRKVIEVDFKDKDKHESQGIYLFTGGVPDQDVSMLSAYVAEACGGCDLHLNVCLFYVGEPQLDTTPPVHYASRTDTAAAYKELTQAARGRLHWFGETGIYESDDINAIISEIEKALNYSQKCAFLVASLKNHSGKELQSTALQKDKPKMLKQSSPKNLSPPKPTAPSVARMNIQDDLDGEKSSQLKALKCHPLHGEASISSAAAHPWKEGLVEQRKKAKPRAEDTSFSLFYTDSGNSVGSVYRRYPQGKLARRINSSVELPKKDTVCSSQEWIATCGLKKLKLELSKCLGPNCRHQKSAQRQIAPAKHCTLFPSVEIKGVVRHIQWTLWEMETYITCMEKVMRCYVQRLQWLLSGSRRLFGTILESNVCIMLDTSGSMSPYLQWMKTEMVLLIWEQLRKNCGSFNLISFAKDLKPWQNTLVETTDEVCHEAMRWVAHLQAHGNTSFLSALLKAFSFQDIQGLYLLTDGKPDTSCNFILNAVQKLHKERDVKVHTISLNSTDRAAVEFLRKLAYLSGGRYHCPVNDDTLSGIHGLLTRGFIEERDPNLPSFEGDDLKILAQELNKARSFFKQAQVFSTAQMTLAPLRRCPWYPSRAKDLQAHLDASGLPLLAFLTNCASCSIQHCRLRCHAQCPTFSPAKKLLSELSVNPQILPHGSCLVSSEHPSSG", "length": 1322, "header": "tr|A0A9J7K6R7-1|A0A9J7K6R7_CRIGR Isoform 1 of von Willebrand factor A domain-containing protein 3A isoform X2 OS=Cricetulus griseus OX=10029 GN=Vwa3a PE=4 SV=1 CANONICAL=A0A9J7K6R7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GS33-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GS33/entry", "sequence": { "sequence": "MSLSGRRYLRHRQHRQPGLDQHRGVGGSTYCGPRATVSNNPWTRPDLHPSPASPRVGHHLVFYHHGNYFLDCHMWFAGGFPLAKRSYKICSMDSIHWNMDRDSDRDPQKQQNQKAMNALAQNPHNGFLVTHINQTQDLLKLQGSETQASASEDSEDWLSTHSLKFKKLTLADLISQRIVDLEEHDNAMPKVRFSTQTICHFESRLSDTIKLYQQRMQWLTENSKKAFGIIKGARVGLLIDVSQVSSGPQKEFQNDLTSLIDDQLSLKEKMYVLSFGVTAQPLWPDPVEVNTSTLQELKLWVQKLQPEGSSNLLQALKRALAQKELNSVVAVLRNCPDQPSEFLSDYIQQSTVGRDLFIHVITYKCDDHVPSVVLKNLTDALGGYYHCYSPESEFYTNRDVDELLAETQKAQDLLRQVQALCYSSPCEELACMIKKIATEIGKGPFTSLLPKPPKHESPLTIKFPDLDKTSAEWLKVNGLKAKKLSLYQILAPNAFNTVEEFVPILQKRVSAVIHEKAMVQFEWHDGTMKNIHVDPPSLYEYQKQLGKAVQMYESRLRWLSLDSRRIWGTVCERRVVILLDVSVTSSMYIIHIQHSLRLLLEEQLSNKDHFNIVAFGSTVESWRPEIVPMSHDNLQSAWRWVLGLRCQGSRNVLSALRKVIEVDFKDKDKHESQGIYLFTGGVPDQDVSMLSAYVAEACGGCDLHLNVCLFYVGEPQLDTTPPVHYASRTDTAAAYKELTQAARGRLHWFGETGIYESDDINAIISEIEKALNYSQKCAFLVASLKNHSGKELQSTALQKDKPKMLKQSSPKNLSPPKPTAPSVARMNIQDDLDGEKSSQLKALKCHPLHGEASISSAAAHPWKEGLVEQRKKAKPRAEDTSFSLFYTDSGNSVGSVYRRYPQGKLARRINSSVELPKKDTVCSSQEWIATCGLKKLKLELSKCLGPNCRHQKSAQRQIAPAKHCTLFPSVEIKGVVRHIQWTLWEMETYITCMEKVMRCYVQRLQWLLSGSRRLFGTILESNVCIMLDTSGSMSPYLQWMKTEMVLLIWEQLRKNCGSFNLISFAKDLKPWQNTLVETTDEVCHEAMRWVAHLQAHGNTSFLSALLKAFSFQDIQGLYLLTDGKPDTSCNFILNAVQKLHKERDVKVHTISLNSTDRAAVEFLRKLAYLSGGRYHCPVNDDTLSGIHGLLTRGFIEERDPNLPSFEGDDLKILAQELNKARSFFKQAQVFRSQLTKKNNMEPKVTLV", "length": 1247, "header": "tr|A0A9J7GS33-1|A0A9J7GS33_CRIGR Computationally mapped isoform of von Willebrand factor A domain-containing protein 3A isoform X4 OS=Cricetulus griseus OX=10029 GN=Vwa3a PE=4 SV=1 CANONICAL=A0A9J7K6R7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GVW0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GVW0/entry", "sequence": { "sequence": "MDRDSDRDPQKQQNQKAMNALAQNPHNGFLVTHINQTQDLLKLQGSETQASASEDSEDWLSTHSLKFKKLTLADLISQRIVDLEEHDNAMPKVRFSTQTICHFESRLSDTIKLYQQRMQWLTENSKKAFGIIKGARVGLLIDVSQVSSGPQKEFQNDLTSLIDDQLSLKEKMYVLSFGVTAQPLWPDPVEVNTSTLQELKLWVQKLQPEGSSNLLQALKRALAQKELNSVVAVLRNCPDQPSEFLSDYIQQSTVGRDLFIHVITYKCDDHVPSVVLKNLTDALGGYYHCYSPESEFYTNRDVDELLAETQKAQDLLRQVQALCYSSPCEELACMIKKIATEIGKGPFTSLLPKPPKHESPLTIKFPDLDKTSAEWLKVNGLKAKKLSLYQILAPNAFNTVEEFVPILQKRVSAVIHEKAMVQFEWHDGTMKNIHVDPPSLYEYQKQLGKAVQMYESRLRWLSLDSRRIWGTVCERRVVILLDVSVTSSMYIIHIQHSLRLLLEEQLSNKDHFNIVAFGSTVESWRPEIVPMSHDNLQSAWRWVLGLRCQGSRNVLSALRKVIEVDFKDKDKHESQGIYLFTGGVPDQDVSMLSAYVAEACGGCDLHLNVCLFYVGEPQLDTTPPVHYASRTDTAAAYKELTQAARGRLHWFGETGIYESDDINAIISEIEKALNYSQKCAFLVASLKNHSGKELQSTALQKDKPKMLKQSSPKNLSPPKPTAPSVARMNIQDDLDGEKSSQLKALKCHPLHGEASISSAAAHPWKEGLVEQRKKAKPRAEDTSFSLFYTDSGNSVGSVYRRYPQGKLARRINSSVELPKKDTVCSSQEWIATCGLKKLKLELSKCLGPNCRHQKSAQRQIAPAKHCTLFPSVEIKGVVRHIQWTLWEMETYITCMEKVMRCYVQRLQWLLSGSRRLFGTILESNVCIMLDTSGSMSPYLQWMKTEMVLLIWEQLRKNCGSFNLISFAKDLKPWQNTLVETTDEVCHEAMRWVAHLQAHGNTSFLSALLKAFSFQDIQGLYLLTDGKPDTSCNFILNAVQKLHKERDVKVHTISLNSTDRAAVEFLRKLAYLSGGRYHCPVNDDTLSGIHGLLTRGFIEERDPNLPSFEGDDLKILAQELNKARSFFKQAQVFSTAQMTLAPLRRCPWYPSRAKDLQAHLDASGLPLLAFLTNCASCSIQHCRLRCHAQCPTFSPAKKLLSELSVNPQILPHGSCLVSSEHPSSG", "length": 1224, "header": "tr|A0A9J7GVW0-1|A0A9J7GVW0_CRIGR Computationally mapped isoform of von Willebrand factor A domain-containing protein 3A isoform X6 OS=Cricetulus griseus OX=10029 GN=Vwa3a PE=4 SV=1 CANONICAL=A0A9J7K6R7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GW85-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GW85/entry", "sequence": { "sequence": "MKKCRRSMDRDSDRDPQKQQNQKAMNALAQNPHNGFLVTHINQTQDLLKLQGSETQASASEDSEDWLSTHSLKFKKLTLADLISQRIVDLEEHDNAMPKVRFSTQTICHFESRLSDTIKLYQQRMQWLTENSKKAFGIIKGARVGLLIDVSQVSSGPQKEFQNDLTSLIDDQLSLKEKMYVLSFGVTAQPLWPDPVEVNTSTLQELKLWVQKLQPEGSSNLLQALKRALAQKELNSVVAVLRNCPDQPSEFLSDYIQQSTVGRDLFIHVITYKCDDHVPSVVLKNLTDALGGYYHCYSPESEFYTNRDVDELLAETQKAQDLLRQVQALCYSSPCEELACMIKKIATEIGKGPFTSLLPKPPKHESPLTIKFPDLDKTSAEWLKVNGLKAKKLSLYQILAPNAFNTVEEFVPILQKRVSAVIHEKAMVQFEWHDGTMKNIHVDPPSLYEYQKQLGKAVQMYESRLRWLSLDSRRIWGTVCERRVVILLDVSVTSSMYIIHIQHSLRLLLEEQLSNKDHFNIVAFGSTVESWRPEIVPMSHDNLQSAWRWVLGLRCQGSRNVLSALRKVIEVDFKDKDKHESQGIYLFTGGVPDQDVSMLSAYVAEACGGCDLHLNVCLFYVGEPQLDTTPPVHYASRTDTAAAYKELTQAARGRLHWFGETGIYESDDINAIISEIEKALNYSQKCAFLVASLKNHSGKELQSTALQKDKPKMLKQSSPKNLSPPKPTAPSVARMNIQDDLDGEKSSQLKALKCHPLHGEASISSAAAHPWKEGLVEQRKKAKPRAEDTSFSLFYTDSGNSVGSVYRRYPQGKLARRINSSVELPKKDTVCSSQEWIATCGLKKLKLELSKCLGPNCRHQKSAQRQIAPAKHCTLFPSVEIKGVVRHIQWTLWEMETYITCMEKVMRCYVQRLQWLLSGSRRLFGTILESNVCIMLDTSGSMSPYLQWMKTEMVLLIWEQLRKNCGSFNLISFAKDLKPWQNTLVETTDEVCHEAMRWVAHLQAHGNTSFLSALLKAFSFQDIQGLYLLTDGKPDTSCNFILNAVQKLHKERDVKVHTISLNSTDRAAVEFLRKLAYLSGGRYHCPVNDDTLSGIHGLLTRGFIEERDPNLPSFEGDDLKILAQELNKARSFFKQAQVFSTAQMTLAPLRRCPWYPSRAKDLQAHLDASGLPLLAFLTNCASCSIQHCRLRCHAQCPTFSPAKKLLSELSVNPQILPHGSCLVSSEHPSSG", "length": 1231, "header": "tr|A0A9J7GW85-1|A0A9J7GW85_CRIGR Computationally mapped isoform of von Willebrand factor A domain-containing protein 3A isoform X5 OS=Cricetulus griseus OX=10029 GN=Vwa3a PE=4 SV=1 CANONICAL=A0A9J7K6R7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K596-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K596/entry", "sequence": { "sequence": 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"length": 1297, "header": "tr|A0A9J7K596-1|A0A9J7K6R7_CRIGR Computationally mapped isoform of von Willebrand factor A domain-containing protein 3A isoform X2 OS=Cricetulus griseus OX=10029 GN=Vwa3a PE=4 SV=1 CANONICAL=A0A9J7K6R7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K6R7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K6R7/entry", "sequence": { "sequence": "MSLSGRRYLRHRQHRQPGLDQHRGVGGSTYCGPRATVSNNPWTRPDLHPSPASPRVGHHLVFYHHGNYFLDCHMWFAGGFPLAKRSYKICSMDSIHWNMDRDSDRDPQKQQNQKAMNALAQNPHNGFLVTHINQTQDLLKLQGSETQASASEDSEDWLSTHSLKFKKLTLADLISQRIVDLEEHDNAMPKVRFSTQTICHFESRLSDTIKLYQQRMQWLTENSKKAFGIIKGARVGLLIDVSQVSSGPQKEFQNDLTSLIDDQLSLKEKMYVLSFGVTAQPLWPDPVEVNTSTLQELKLWVQKLQPEGSSNLLQALKRALAQKELNSVVAVLRNCPDQPSEFLSDYIQQSTVGRDLFIHVITYKCDDHVPSVVLKNLTDALGGYYHCYSPESEFYTNRDVDELLAETQKAQDLLRQVQALCYSSPCEELACMIKKIATEIGKGPFTSLLPKPPKHESPLTIKFPDLDKTSAEWLKVNGLKAKKLSLYQILAPNAFNTVEEFVPILQKRVSAVIHEKAMVQFEWHDGTMKNIHVDPPSLYEYQKQLGKAVQMYESRLRWLSLDSRRIWGTVCERRVVILLDVSVTSSMYIIHIQHSLRLLLEEQLSNKDHFNIVAFGSTVESWRPEIVPMSHDNLQSAWRWVLGLRCQGSRNVLSALRKVIEVDFKDKDKHESQGIYLFTGGVPDQDVSMLSAYVAEACGGCDLHLNVCLFYVGEPQLDTTPPVHYASRTDTAAAYKELTQAARGRLHWFGETGIYESDDINAIISEIEKALNYSQKCAFLVASLKNHSGKELQSTALQKDKPKMLKQSSPKNLSPPKPTAPSVARMNIQDDLDGEKSSQLKALKCHPLHGEASISSAAAHPWKEGLVEQRKKAKPRAEDTSFSLFYTDSGNSVGSVYRRYPQGKLARRINSSVELPKKDTVCSSQEWIATCGLKKLKLELSKCLGPNCRHQKSAQRQIAPAKHCTLFPSVEIKGVVRHIQWTLWEMETYITCMEKVMRCYVQRLQWLLSGSRRLFGTILESNVCIMLDTSGSMSPYLQWMKTEMVLLIWEQLRKNCGSFNLISFAKDLKPWQNTLVETTDEVCHEAMRWVAHLQAHGNTSFLSALLKAFSFQDIQGLYLLTDGKPDTSCNFILNAVQKLHKERDVKVHTISLNSTDRAAVEFLRKLAYLSGGRYHCPVNDDTLSGIHGLLTRGFIEERDPNLPSFEGDDLKILAQELNKARSFFKQAQVFSTAQMTLAPLRRCPWYPSRAKDLQAHLDASGLPLLAFLTNCASCSIQHCRLRCHAQCPTFSPAKKLLSELSVNPQILPHGSCLVSSEHPSSG", "length": 1322, "header": "tr|A0A9J7K6R7-1|A0A9J7K6R7_CRIGR Isoform 1 of von Willebrand factor A domain-containing protein 3A isoform X2 OS=Cricetulus griseus OX=10029 GN=Vwa3a PE=4 SV=1 CANONICAL=A0A9J7K6R7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K596", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K596" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K596", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K596" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754479", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754479", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 1098, "end_pos": 1100, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1153, "end_pos": 1155, "annotation": "n_glycosylation_sequon" }, { "start_pos": 133, "end_pos": 135, "annotation": "n_glycosylation_sequon" }, { "start_pos": 290, "end_pos": 292, "annotation": "n_glycosylation_sequon" }, { "start_pos": 376, "end_pos": 378, "annotation": "n_glycosylation_sequon" }, { "start_pos": 772, "end_pos": 774, "annotation": "n_glycosylation_sequon" }, { "start_pos": 786, "end_pos": 788, "annotation": "n_glycosylation_sequon" }, { "start_pos": 812, "end_pos": 814, "annotation": "n_glycosylation_sequon" }, { "start_pos": 910, "end_pos": 912, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7K6R7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K6R7" }, { "id": "PS50234", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50234" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "VWFA", "eco_id": "ECO_0000259", "start_pos": 1022, "end_pos": 1198, "start_aa": "Asn", "end_aa": "Arg", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1098, "end_pos": 1100 }, { "start_pos": 1153, "end_pos": 1155 }, { "start_pos": 133, "end_pos": 135 }, { "start_pos": 290, "end_pos": 292 }, { "start_pos": 376, "end_pos": 378 }, { "start_pos": 772, "end_pos": 774 }, { "start_pos": 786, "end_pos": 788 }, { "start_pos": 812, "end_pos": 814 }, { "start_pos": 910, "end_pos": 912 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", 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"https://www.ncbi.nlm.nih.gov/protein/XP_035298189" }, "gene_names": [ { "name": "LOC100756621", "type": "recommended", "evidence": [ { "id": "A0A9J7K5B1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5B1" } ] }, { "name": "LOC100756621", "type": "synonym", "evidence": [ { "id": "XP_035298189", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035298189" } ] } ], "protein_names": [ { "name": "Interferon-induced very large GTPase 1 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7K5B1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5B1/entry#names_and_taxonomy" } ] }, { "name": "interferon-induced very large GTPase 1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035298189", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035298189" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035298189", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035298189" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K5B1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5B1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100756621", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5B1", "locus": {} } ], "crossref": [ { "id": "100756621", "url": "https://www.ncbi.nlm.nih.gov/gene/100756621", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein 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Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K5B1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5B1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K5B1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5B1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100756621", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756621", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K5B1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5B1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K5B1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5B1" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K5B1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5B1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1011, "end_pos": 1013, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1189, "end_pos": 1191, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1267, "end_pos": 1269, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1362, "end_pos": 1364, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1560, "end_pos": 1562, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1578, "end_pos": 1580, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1657, "end_pos": 1659, "annotation": "n_glycosylation_sequon" }, { "start_pos": 175, "end_pos": 177, 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"url": "https://www.uniprot.org/uniprotkb/A0A9J7K5B7" } ] }, { "name": "LOC100765008", "type": "synonym", "evidence": [ { "id": "XP_035298208", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035298208" } ] } ], "protein_names": [ { "name": "Olfactomedin-4", "type": "synonym", "evidence": [ { "id": "A0A9J7K5B7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5B7/entry#names_and_taxonomy" } ] }, { "name": "olfactomedin-4", "type": "synonym", "evidence": [ { "id": "XP_035298208", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035298208" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. 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"date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7K5B9-1", "uniprot_ac": "A0A9J7K5B9", "uniprot_id": "A0A9J7K5B9_CRIGR", "mass": { "chemical_mass": 10956.0, "monoisotopic_mass": 10956.0 }, "refseq": { "ac": "XP_035293618", "name": "secreted seminal-vesicle Ly-6 protein 1-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035293618" }, "gene_names": [ { "name": "LOC100751623", "type": "recommended", "evidence": [ { "id": "A0A9J7K5B9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5B9" } ] }, { "name": "LOC100751623", "type": "synonym", "evidence": [ { "id": "XP_035293618", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035293618" } ] } ], "protein_names": [ { "name": "Secreted seminal-vesicle Ly-6 protein 1-like", "type": "synonym", "evidence": [ { "id": "A0A9J7K5B9", "database": "UniProtKB", "url": 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This record is derived from a genomic sequence (NW_003616396.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035293618", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035293618" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K5B9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5B9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100751623", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5B9", "locus": {} } ], "crossref": [ { "id": "A0A9J7K5B9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K5B9", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd23628", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23628", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100751623", "url": "https://www.ncbi.nlm.nih.gov/gene/100751623", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR016054", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016054", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751623", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751623", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K5B9", "url": "https://www.orthodb.org/?gene=A0A9J7K5B9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PF00021", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00021", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035293618", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035293618", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K5B9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5B9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K5B9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5B9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGKHFLLLLLGLCLVVGFLQALTCLQCDLLNADGVCEKGESTCEAKEDQECGIMVVSQGHDILFGQQDCSSRCLNNTFTHYNLTLDFTCCHDQSLCNEF", "length": 99, "header": "tr|A0A9J7K5B9-1|A0A9J7K5B9_CRIGR Isoform 1 of Secreted seminal-vesicle Ly-6 protein 1-like OS=Cricetulus griseus OX=10029 GN=LOC100751623 PE=4 SV=1 CANONICAL=A0A9J7K5B9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K5B9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5B9/entry", "sequence": { "sequence": "MGKHFLLLLLGLCLVVGFLQALTCLQCDLLNADGVCEKGESTCEAKEDQECGIMVVSQGHDILFGQQDCSSRCLNNTFTHYNLTLDFTCCHDQSLCNEF", "length": 99, "header": "tr|A0A9J7K5B9-1|A0A9J7K5B9_CRIGR Isoform 1 of Secreted seminal-vesicle Ly-6 protein 1-like OS=Cricetulus griseus OX=10029 GN=LOC100751623 PE=4 SV=1 CANONICAL=A0A9J7K5B9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"MAQWWQILLGLWTVMSTVTGDKPVNICMNAKHHKREPGPEDKLFLECVPWKDNACCTFTTSWEAHLDELLFFNFSMLHCGLLTPVCHKHFIQAVCLHECSPNLGPWIQLVRRQEANPCNSLPLIKGWHLQEVVPNRQEEQVQGVPLCLEDCEEWWEDCRSSYTCKSNWHSSFHSSQEKNHCPAQAPCRPFPDYFPTPSDLCEKIWSNTFKASPEHRNSGRCLQKWFEPTQGNPNVEVALHFANSASAWKLSYTLTSFSLYLLLHS", "length": 265, "header": "tr|A0A9J7K5N1-1|A0A9J7K5N1_CRIGR Isoform 1 of Sperm-egg fusion protein Juno isoform X1 OS=Cricetulus griseus OX=10029 GN=Izumo1r PE=3 SV=1 CANONICAL=A0A9J7K5N1-1" }, "isoforms": [ { "isoform_ac": "A0A3L7HV79-1", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HV79/entry", "sequence": { "sequence": "MAQWWQILLGLWTVMSTVTGDKPVNICMNAKHHKREPGPEDKLFLECVPWKDNACCTFTTSWEAHLDELLFFNFSMLHCGLLTPVCHKHFIQAVCLHECSPNLGPWIQLVVPNRQEEQVQGVPLCLEDCEEWWEDCRSSYTCKSNWHSSFHSSQEKNHCPAQAPCRPFPDYFPTPSDLCEKIWSNTFKASPEHRNSGRCLQKWFEPTQGNPNVEVALHFANSASAWKLSYTLTSFSLYLLLHS", "length": 243, "header": "tr|A0A3L7HV79-1|A0A3L7HV79_CRIGR Computationally mapped isoform of Sperm-egg fusion protein Juno isoform X2 OS=Cricetulus griseus OX=10029 GN=Izumo1r PE=3 SV=1 CANONICAL=A0A9J7K5N1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K5N1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5N1/entry", "sequence": { "sequence": "MAQWWQILLGLWTVMSTVTGDKPVNICMNAKHHKREPGPEDKLFLECVPWKDNACCTFTTSWEAHLDELLFFNFSMLHCGLLTPVCHKHFIQAVCLHECSPNLGPWIQLVRRQEANPCNSLPLIKGWHLQEVVPNRQEEQVQGVPLCLEDCEEWWEDCRSSYTCKSNWHSSFHSSQEKNHCPAQAPCRPFPDYFPTPSDLCEKIWSNTFKASPEHRNSGRCLQKWFEPTQGNPNVEVALHFANSASAWKLSYTLTSFSLYLLLHS", "length": 265, "header": "tr|A0A9J7K5N1-1|A0A9J7K5N1_CRIGR Isoform 1 of Sperm-egg fusion protein Juno isoform X1 OS=Cricetulus griseus OX=10029 GN=Izumo1r PE=3 SV=1 CANONICAL=A0A9J7K5N1-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 196, "start_aa": "Thr", "end_pos": 196, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr196", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K5N1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5N1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K5N1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5N1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100755390", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755390", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A6ND01-1", "protein_name": "Sperm-egg fusion protein Juno", "gene_name": "IZUMO1R", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MACWWPLLLELWTVMPTWAGDELLNICMNAKHHKRVPSPEDKLYEECIPWKDNACCTLTTSWEAHLDVSPLYNFSLFHCGLLMPGCRKHFIQAICFYECSPNLGPWIQPVGSLGWEVAPSGQGERVVNVPLCQEDCEEWWEDCRMSYTCKSNWRGGWDWSQGKNRCPKGAQCLPFSHYFPTPADLCEKTWSNSFKASPERRNSGRCLQKWFEPAQGNPNVAVARLFASSAPSWELSYTIMVCSLFLPFLS", "length": 250 }, "evidence": [ { "id": "A0A9J7K5N1", "url": "https://omabrowser.org/oma/group/A0A9J7K5N1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "F1M928-1", "protein_name": "Sperm-egg fusion protein Juno", "gene_name": "Izumo1r", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQWWLILLGLWTVLPSLAGGKLLNVCMNSKHHKQEPGPEDKLYFECMPWKDNACCTRDTSWEAHLDEPLLFNFSMTHCGLLTPLCHKHFIQAICFYECSPNLGPWIQPVVPNRQEEQRLWDVPLCLEDCEEWWKDCRTSHTCKADWLHGWVWDQGKNGCPAHAPCLPFSDYFPTPADLCEKIWNNTFKASPERRNSGRCLQKWFEPTHGNPNVEVALHFAGSASAPQLSYSITAFSLCLLLHA", "length": 244 }, "evidence": [ { "id": "A0A9J7K5N1", "url": "https://omabrowser.org/oma/group/A0A9J7K5N1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9EQF4-1", "protein_name": "Sperm-egg fusion protein Juno", "gene_name": "Izumo1r", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAQWWQILLGLWAVLPTLAGDKLLSVCMNSKRHKQEPGPEDELYQECRPWEDNACCTRSTSWEAHLEEPLLFNFSMMHCGLLTPACRKHFIQAICFHECSPNLGPWIQPVVPNGQEEQRVWGVPLCQEDCEDWWRACHSSLTCKSNWLHGWDWSEEKKHCPAHEPCLPFSYHFPTPDDLCEKIWNNTFKASPERRNSGRCLQKWFEPTLSNPNVEVALHFAGSALAPQLSYTLPAFSLCLLFHP", "length": 244 }, "evidence": [ { "id": "A0A9J7K5N1", "url": "https://omabrowser.org/oma/group/A0A9J7K5N1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "sperm-egg recognition", "id": "GO:0035036", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035036", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K5N1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5N1" } ], "pmid": "" }, { "name": "cell adhesion", "id": "GO:0007155", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007155", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K5N1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5N1" } ], "pmid": "" }, { "name": "fusion of sperm to egg plasma membrane involved in single fertilization", "id": "GO:0007342", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007342", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K5N1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5N1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "external side of plasma membrane", "id": "GO:0009897", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009897", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K5N1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5N1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "signaling receptor activity", "id": "GO:0038023", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0038023", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K5N1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5N1" } ], "pmid": "" }, { "name": "signaling receptor binding", "id": "GO:0005102", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005102", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K5N1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5N1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 73, "end_pos": 75, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7K5N1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5N1" }, { "id": "PF03024", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03024" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Folate receptor-like", "eco_id": "ECO_0000259", "start_pos": 26, "end_pos": 223, "start_aa": "Ile", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 196 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 73, "end_pos": 75 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"uniprot_canonical_ac": "A0A9J7K5N2-1", "uniprot_ac": "A0A9J7K5N2", "uniprot_id": "A0A9J7K5N2_CRIGR", "mass": { "chemical_mass": 30151.0, "monoisotopic_mass": 30151.0 }, "refseq": { "ac": "XP_035296661", "name": "LOW QUALITY PROTEIN: chromobox protein homolog 7 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035296661" }, "gene_names": [ { "name": "Cbx7", "type": "recommended", "evidence": [ { "id": "A0A9J7K5N2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5N2" } ] }, { "name": "Cbx7", "type": "synonym", "evidence": [ { "id": "XP_035296661", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035296661" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: chromobox protein homolog 7 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035296661", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035296661" }, { "id": "A0A9J7K5N2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5N2/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035296661", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035296661" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K5N2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5N2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cbx7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5N2", "locus": {} } ], "crossref": [ { "id": "A0A9J7K5N2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K5N2", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd18646", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18646", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100750509", "url": "https://www.ncbi.nlm.nih.gov/gene/100750509", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000953", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000953", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016197", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016197", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017984", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017984", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023779", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023779", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023780", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023780", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033773", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033773", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043000", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043000", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100750509", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750509", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K5N2", "url": "https://www.orthodb.org/?gene=A0A9J7K5N2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47277", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47277", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47277:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47277:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00385", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00385", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17218", "url": 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[ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7K637-1", "uniprot_ac": "A0A9J7K637", "uniprot_id": "A0A9J7K637_CRIGR", "mass": { "chemical_mass": 333789.0, "monoisotopic_mass": 333789.0 }, "refseq": { "ac": "XP_035299074", "name": "protein furry homolog isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035299074" }, "gene_names": [ { "name": "Fry", "type": "recommended", "evidence": [ { "id": "A0A9J7K637", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K637" } ] }, { "name": "Fry", "type": "synonym", "evidence": [ { "id": "XP_035299074", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035299074" } ] } ], "protein_names": [ { "name": "Protein furry homolog isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7K637", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K637/entry#names_and_taxonomy" } ] }, { "name": "protein furry homolog isoform X1", "type": "synonym", "evidence": [ { "id": "XP_035299074", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035299074" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035299074", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035299074" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K637", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K637" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fry", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K637", "locus": {} } ], "crossref": [ { "id": "100759522", "url": "https://www.ncbi.nlm.nih.gov/gene/100759522", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR025481", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025481", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025614", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025614", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029473", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029473", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039867", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039867", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045842", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045842", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759522", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759522", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K637", "url": "https://www.orthodb.org/?gene=A0A9J7K637", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12295", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12295", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12295:SF29", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12295:SF29", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14222", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14222", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14225", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14225", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14228", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14228", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF19421", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19421", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035299074", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035299074", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GTJ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GTJ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GTJ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GTJ7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K637", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K637", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K637-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K637-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLPINVDPDSKPGEYVLKSLFVNFTTQAERKIRIIMAEPLEKPLTKSLQRGEDPQFDQVISSMSSLSEYCLPSILRTLFDWYKRQNGIEDESHEYRPRTSNKSKSDEQQRDYLMERRDLAIDFIFSLVLIEVLKQIPLHPVIDSLIHDIINLAFKHFKYKEGYLGPNTGNMHIVADLYAEVIGVLAQAKFPAVKKKFMAELKELRHKEQSPYVIQSIISLIMGMKFFRIKMYPVEDFEASLQFMQECAHYFLEVKDKDIKHALAGLFVEILVPVAAAVKNEVNVPCLRNFVESLYDTTLELSSRKKHSLALYPLVTCLLCVSQKPLFLNRWHVFLNNCLSNLKNKDPKMARVALESLYRLLWVYMIRIKCESNTATQSRLITITTTLFPKGSRGVVPRDMPLNIFVKIVQFIAQERLDFAMKEIIFDFLCVGKPAKAFSLNPERMNIGLRAFLVIADSLQQKDGEPPMPVTGAVLPSGNTLRVKKTYLSKTLTEEEAKMIGMSLYYSQVRKAVGNILRHLDKEVGRCMMLTNVQMLNKEPEDMITGERKPKIDLFRTCVAAIPRLLPDGMSKLELIDLLARLSIHMDDELRHIAQNSLQGLLVDFCDWREDVLFGFTNFLLREVNDMHHTLLDSSLKLLLQLLTQWKLVIQTQGRVYEQANKIRNSELIPNGSSHRMQSERGLHCSVLHAVEGFALVLLCSFQVATRKLSVLILKEIRALFLALGQPEDDDRPMIDVMDQLSSSILESFIHVAVSDSATLPLTHNVDLQWLVEWNAVLVNSHYDVKSPSHVWIFAQSVKDPWVLCLFSFLRQENLPKHCPTALSYAWPYAFTRLQSVMPLVDPNSPINAKKTSTAGSGDNYVTLWRNYLILCFGVAKPSIMSPGHLRASTPEIMATTPDGTVSYDNKAIGTPSVGVLLKQLVPLMRLENIEITESLVLGFGRTNSLVFRELVEELHPLMKEALERRPENKKRRERRDLLRLQLLRIFELLADAGVISDSTNGALERDTLALGALFLEYVDLTRMLLEAENDKEVEILKDIRAHFSAMVANLIQCVPVHHRRFLFPQQSLRHHLFILFSQWAGPFSIMFTPLDRYSDRNHQITRYQYCALKAMSAVLCCGPVFDNVGLSPDGYLYKWLDNILACQDLRVHQLGCEVVILLLELNPDQINLFNWAIDRCYTGSYQLASGCFRAIATVCGNRNYPCDIVTLLNLVLFKASDTNREIYEVSMQLMQILEAKLFVHSKKVAEQRPGSILYGTHGPLPPLYSVSLALLSCELARMYPELTLPLFSEVSQRFPTTHPNGRQIMLTYLLPWLHNIELVDSRLLLPGSSPSSPEEEVKDREGEVTTSHGLKGNGWGSPEATSLVLNNLMYMTAKYGDEVPGPEMENAWNALANNEKWSNNLRITLQFLISLCGVSSDTVLLPYIKKVAIYLCRNNTIQTMEELLFELQQTEPVNPIVQHCDNPPFYRFTASSKASAAASGTTSSSNTVVAGQDSFPDPEESKILKESDDRFSNVIRAHTRLESRYSNSSGGSYDEDKNDPISPYTGWLLTITEAKQPQPLPMPCTGGCWAPLVDYLPETITPRGPLHRCNIAVIFMTEMVVDHSVREDWALHLPLLLHAVFLGLDHYRPEVFEHSKKLLLHLLIALSCNSNFHAIASVLLQTREMGEAKTLTMQPAYQPEYLYTGGFDFLREDQSSPVPDSGLSSSSTSSSISLGGSSGNLPQMTQEVEDVDTANETDEKANKLIEFLTTRAFGPLWCHEDITPKNQNSKSAEQLSNFLRHVVSVFKDSKSGFHLEQHLSEVALQTALASSSRHYAGRSFQIFRALKQPLSAHALSDLLSRLVEVIGEHGDEIQGYVMEALLTLEAAVDNLSDCLKNSDLFTVLSRSSSPDLNSSSKLTASRKSTGQLNVNPGTPSGNTTTAERSRHQRSFSVPKKFGVVDRSSDPPRSATLDRIQACTQQGLSSKTRSNSSLKDSLTDPSHVNHPTNLLATIFWVTVALMESDFEFEYLMALRLLNRLLAHMPLDKAENREKLEKLQGQLQWADFSGLQQLLLKGFTSLTTTDLTLQLFSLLTPVSKVPMVDSSQAIGFPLNVLCLLPQLIQHFENPNQFCKDIAERIAQVCLEEKNPKLSNLAHVMTLYKTHSYTRDCATWVNVVCRYLHEAYADITLNMVTYLAELLEKGLPSMQQPLLQVIYSLLSYMDLSVVPVKQFNVEVLKTIEKYVQSIHWREALNILKLVVSRSASLVLPSYQHGDLSKIELHRVWTSTSKELPGKTLDFHFDISETPIIGRRYDELQTSSGRDGKPRAMAVTRSASSTSSGSNSNVLVPVSWKRPQYSQKRTKEKLVHVLSLCGQEVGLSKNPSVIFSSCGDLDLPEHQTSLVSSEDGTREQENMDDTNSEQQFRVFRDFDFLDVELEDGEELQGESMDNFNWGVRRRSLDSLDKCDTQILEERQLSRSTPSLNKMNHEDSDESSEEEDLTASQILEHSDLIMNLSPSEEASPLELLTTACDSTPADPHSFNTRMASFEASLPDINNLQISEGSKAEAVPEEEDTTVQEDDLSSSINELPAAFECSDSFSLDMTEAEEKGNQGLDQYTLASFGEGDRGVSPPPSPFFSAILAAFQPAACDDAEEAWRSHINQLMCDSDGSCAVYTFHVFSSLFKNIQKRFCFLTCDAASYLGDNLRGIGSKFVSSSQMLTSCSECPTLFVDAETLLSCGLLDKLKFSVLELQEYLDTYNNRKEATLSWLANCKATFAGGSRDGVITCQPGDSEEKQLELCQRLYKLHFQLLLLYQSYCKLIGQVHEVSSVPELLNMSRELSDLKRNLKEATAAIATDPLYIEGAWSEPTFTSTEAAIQSMLECLKNNELGKALRQIKECRSLWPNDIFGSSSDDEVQTLLNIYFRHQTLGQTGTYALVGSNHSLTEICTKLMELNMEIRDMIRRAQSYRVLTAFLPDSSVSGTSL", "length": 2966, "header": "tr|A0A9J7K637-1|A0A9J7K637_CRIGR Isoform 1 of Protein furry homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=Fry PE=4 SV=1 CANONICAL=A0A9J7K637-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GTJ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GTJ7/entry", "sequence": { "sequence": "MLPINVDPDSKPGEYVLKSLFVNFTTQAERKIRIIMAEPLEKPLTKSLQRGEDPQFDQVISSMSSLSEYCLPSILRTLFDWYKRQNGIEDESHEYRPRTSNKSKSDEQQRDYLMERRDLAIDFIFSLVLIEVLKQIPLHPVIDSLIHDIINLAFKHFKYKEGYLGPNTGNMHIVADLYAEVIGVLAQAKFPAVKKKFMAELKELRHKEQSPYVIQSIISLIMGMKFFRIKMYPVEDFEASLQFMQECAHYFLEVKDKDIKHALAGLFVEILVPVAAAVKNEVNVPCLRNFVESLYDTTLELSSRKKHSLALYPLVTCLLCVSQKPLFLNRWHVFLNNCLSNLKNKDPKMARVALESLYRLLWVYMIRIKCESNTATQSRLITITTTLFPKGSRGVVPRDMPLNIFVKIVQFIAQERLDFAMKEIIFDFLCVGKPAKAFSLNPERMNIGLRAFLVIADSLQQKDGEPPMPVTGAVLPSGNTLRVKKTYLSKTLTEEEAKMIGMSLYYSQVRKAVGNILRHLDKEVGRCMMLTNVQMLNKEPEDMITGERKPKIDLFRTCVAAIPRLLPDGMSKLELIDLLARLSIHMDDELRHIAQNSLQGLLVDFCDWREDVLFGFTNFLLREVNDMHHTLLDSSLKLLLQLLTQWKLVIQTQGRVYEQANKIRNSELIPNGSSHRMQSERGLHCSVLHAVEGFALVLLCSFQVATRKLSVLILKEIRALFLALGQPEDDDRPMIDVMDQLSSSILESFIHVAVSDSATLPLTHNVDLQWLVEWNAVLVNSHYDVKSPSHVWIFAQSVKDPWVLCLFSFLRQENLPKHCPTALSYAWPYAFTRLQSVMPLVDPNSPINAKKTSTAGSGDNYVTLWRNYLILCFGVAKPSIMSPGHLRASTPEIMATTPDGTVSYDNKAIGTPSVGVLLKQLVPLMRLENIEITESLVLGFGRTNSLVFRELVEELHPLMKEALERRPENKKRRERRDLLRLQLLRIFELLADAGVISDSTNGALERDTLALGALFLEYVDLTRMLLEAENDKEVEILKDIRAHFSAMVANLIQCVPVHHRRFLFPQQSLRHHLFILFSQWAGPFSIMFTPLDRYSDRNHQITRYQYCALKAMSAVLCCGPVFDNVGLSPDGYLYKWLDNILACQDLRVHQLGCEVVILLLELNPDQINLFNWAIDRCYTGSYQLASGCFRAIATVCGNRNYPCDIVTLLNLVLFKASDTNREIYEVSMQLMQILEAKLFVHSKKVAEQRPGSILYGTHGPLPPLYSVSLALLSCELARMYPELTLPLFSEVSQRFPTTHPNGRQIMLTYLLPWLHNIELVDSRLLLPGSSPSSPEEEVKDREGEVTTSHGLKGNGWGSPEATSLVLNNLMYMTAKYGDEVPGPEMENAWNALANNEKWSNNLRITLQFLISLCGVSSDTVLLPYIKKVAIYLCRNNTIQTMEELLFELQQTEPVNPIVQHCDNPPFYRFTASSKASAAASGTTSSSNTVVAGQDSFPDPEESKILKESDDRFSNVIRAHTRLESRYSNSSGGSYDEDKNDPISPYTGWLLTITEAKQPQPLPMPCTGGCWAPLVDYLPETITPRGPLHRCNIAVIFMTEMVVDHSVREDWALHLPLLLHAVFLGLDHYRPEVFEHSKKLLLHLLIALSCNSNFHAIASVLLQTREMGEAKTLTMQPAYQPEYLYTGGFDFLREDQSSPVPDSGLSSSSTSSSISLGGSSGNLPQMTQEVEDVDTANETDEKANKLIEFLTTRAFGPLWCHEDITPKNQNSKSAEQLSNFLRHVVSVFKDSKSGFHLEQHLSEVALQTALASSSRHYAGRSFQIFRALKQPLSAHALSDLLSRLVEVIGEHGDEIQGYVMEALLTLEAAVDNLSDCLKNSDLFTVLSRSSSPDLNSSSKLTASRKSTGQLNVNPGTPSGNTTTAERSRHQRSFSVPKKFGVVDRSSDPPRSATLDRIQACTQQGLSSKTRSNSSLKDSLTDPSHVNHPTNLLATIFWVTVALMESDFEFEYLMALRLLNRLLAHMPLDKAENREKLEKLQGQLQWADFSGLQQLLLKGFTSLTTTDLTLQLFSLLTPVSKVPMVDSSQAIGFPLNVLCLLPQLIQHFENPNQFCKDIAERIAQVCLEEKNPKLSNLAHVMTLYKTHSYTRDCATWVNVVCRYLHEAYADITLNMVTYLAELLEKGLPSMQQPLLQVIYSLLSYMDLSVVPVKQFNVEVLKTIEKYVQSIHWREALNILKLVVSRSASLVLPSYQHGDLSKIELHRVWTSTSKELPGKTLDFHFDISETPIIGRRYDELQTSSGRDGKPRAMAVTRSASSTSSGSNSNVLVPVSWKRPQYSQKRTKEKLVHVLSLCGQEVGLSKNPSVIFSSCGDLDLPEHQTSLVSSEDGTREQENMDDTNSEQQFRVFRDFDFLDVELEDGEGESMDNFNWGVRRRSLDSLDKCDTQILEERQLSRSTPSLNKMNHEDSDESSEEEDLTASQILEHSDLIMNLSPSEEASPLELLTTACDSTPADPHSFNTRMASFEASLPDINNLQISEGSKAEAVPEEEDTTVQEDDLSSSINELPAAFECSDSFSLDMTEAEEKGNQGLDQYTLASFGEGDRGVSPPPSPFFSAILAAFQPAACDDAEEAWRSHINQLMCDSDGSCAVYTFHVFSSLFKNIQKRFCFLTCDAASYLGDNLRGIGSKFVSSSQMLTSCSECPTLFVDAETLLSCGLLDKLKFSVLELQEYLDTYNNRKEATLSWLANCKATFAGGSRDGVITCQPGDSEEKQLELCQRLYKLHFQLLLLYQSYCKLIGQVHEVSSVPELLNMSRELSDLKRNLKEATAAIATDPLYIEGAWSEPTFTSTEAAIQSMLECLKNNELGKALRQIKECRSLWPNDIFGSSSDDEVQTLLNIYFRHQTLGQTGTYALVGSNHSLTEICTKLMELNMEIRDMIRRAQSYRVLTAFLPDSSVSGTSL", "length": 2963, "header": "tr|A0A9J7GTJ7-1|A0A9J7GTJ7_CRIGR Computationally mapped isoform of Protein furry homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=Fry PE=4 SV=1 CANONICAL=A0A9J7K637-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K637-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K637/entry", "sequence": { "sequence": "MLPINVDPDSKPGEYVLKSLFVNFTTQAERKIRIIMAEPLEKPLTKSLQRGEDPQFDQVISSMSSLSEYCLPSILRTLFDWYKRQNGIEDESHEYRPRTSNKSKSDEQQRDYLMERRDLAIDFIFSLVLIEVLKQIPLHPVIDSLIHDIINLAFKHFKYKEGYLGPNTGNMHIVADLYAEVIGVLAQAKFPAVKKKFMAELKELRHKEQSPYVIQSIISLIMGMKFFRIKMYPVEDFEASLQFMQECAHYFLEVKDKDIKHALAGLFVEILVPVAAAVKNEVNVPCLRNFVESLYDTTLELSSRKKHSLALYPLVTCLLCVSQKPLFLNRWHVFLNNCLSNLKNKDPKMARVALESLYRLLWVYMIRIKCESNTATQSRLITITTTLFPKGSRGVVPRDMPLNIFVKIVQFIAQERLDFAMKEIIFDFLCVGKPAKAFSLNPERMNIGLRAFLVIADSLQQKDGEPPMPVTGAVLPSGNTLRVKKTYLSKTLTEEEAKMIGMSLYYSQVRKAVGNILRHLDKEVGRCMMLTNVQMLNKEPEDMITGERKPKIDLFRTCVAAIPRLLPDGMSKLELIDLLARLSIHMDDELRHIAQNSLQGLLVDFCDWREDVLFGFTNFLLREVNDMHHTLLDSSLKLLLQLLTQWKLVIQTQGRVYEQANKIRNSELIPNGSSHRMQSERGLHCSVLHAVEGFALVLLCSFQVATRKLSVLILKEIRALFLALGQPEDDDRPMIDVMDQLSSSILESFIHVAVSDSATLPLTHNVDLQWLVEWNAVLVNSHYDVKSPSHVWIFAQSVKDPWVLCLFSFLRQENLPKHCPTALSYAWPYAFTRLQSVMPLVDPNSPINAKKTSTAGSGDNYVTLWRNYLILCFGVAKPSIMSPGHLRASTPEIMATTPDGTVSYDNKAIGTPSVGVLLKQLVPLMRLENIEITESLVLGFGRTNSLVFRELVEELHPLMKEALERRPENKKRRERRDLLRLQLLRIFELLADAGVISDSTNGALERDTLALGALFLEYVDLTRMLLEAENDKEVEILKDIRAHFSAMVANLIQCVPVHHRRFLFPQQSLRHHLFILFSQWAGPFSIMFTPLDRYSDRNHQITRYQYCALKAMSAVLCCGPVFDNVGLSPDGYLYKWLDNILACQDLRVHQLGCEVVILLLELNPDQINLFNWAIDRCYTGSYQLASGCFRAIATVCGNRNYPCDIVTLLNLVLFKASDTNREIYEVSMQLMQILEAKLFVHSKKVAEQRPGSILYGTHGPLPPLYSVSLALLSCELARMYPELTLPLFSEVSQRFPTTHPNGRQIMLTYLLPWLHNIELVDSRLLLPGSSPSSPEEEVKDREGEVTTSHGLKGNGWGSPEATSLVLNNLMYMTAKYGDEVPGPEMENAWNALANNEKWSNNLRITLQFLISLCGVSSDTVLLPYIKKVAIYLCRNNTIQTMEELLFELQQTEPVNPIVQHCDNPPFYRFTASSKASAAASGTTSSSNTVVAGQDSFPDPEESKILKESDDRFSNVIRAHTRLESRYSNSSGGSYDEDKNDPISPYTGWLLTITEAKQPQPLPMPCTGGCWAPLVDYLPETITPRGPLHRCNIAVIFMTEMVVDHSVREDWALHLPLLLHAVFLGLDHYRPEVFEHSKKLLLHLLIALSCNSNFHAIASVLLQTREMGEAKTLTMQPAYQPEYLYTGGFDFLREDQSSPVPDSGLSSSSTSSSISLGGSSGNLPQMTQEVEDVDTANETDEKANKLIEFLTTRAFGPLWCHEDITPKNQNSKSAEQLSNFLRHVVSVFKDSKSGFHLEQHLSEVALQTALASSSRHYAGRSFQIFRALKQPLSAHALSDLLSRLVEVIGEHGDEIQGYVMEALLTLEAAVDNLSDCLKNSDLFTVLSRSSSPDLNSSSKLTASRKSTGQLNVNPGTPSGNTTTAERSRHQRSFSVPKKFGVVDRSSDPPRSATLDRIQACTQQGLSSKTRSNSSLKDSLTDPSHVNHPTNLLATIFWVTVALMESDFEFEYLMALRLLNRLLAHMPLDKAENREKLEKLQGQLQWADFSGLQQLLLKGFTSLTTTDLTLQLFSLLTPVSKVPMVDSSQAIGFPLNVLCLLPQLIQHFENPNQFCKDIAERIAQVCLEEKNPKLSNLAHVMTLYKTHSYTRDCATWVNVVCRYLHEAYADITLNMVTYLAELLEKGLPSMQQPLLQVIYSLLSYMDLSVVPVKQFNVEVLKTIEKYVQSIHWREALNILKLVVSRSASLVLPSYQHGDLSKIELHRVWTSTSKELPGKTLDFHFDISETPIIGRRYDELQTSSGRDGKPRAMAVTRSASSTSSGSNSNVLVPVSWKRPQYSQKRTKEKLVHVLSLCGQEVGLSKNPSVIFSSCGDLDLPEHQTSLVSSEDGTREQENMDDTNSEQQFRVFRDFDFLDVELEDGEELQGESMDNFNWGVRRRSLDSLDKCDTQILEERQLSRSTPSLNKMNHEDSDESSEEEDLTASQILEHSDLIMNLSPSEEASPLELLTTACDSTPADPHSFNTRMASFEASLPDINNLQISEGSKAEAVPEEEDTTVQEDDLSSSINELPAAFECSDSFSLDMTEAEEKGNQGLDQYTLASFGEGDRGVSPPPSPFFSAILAAFQPAACDDAEEAWRSHINQLMCDSDGSCAVYTFHVFSSLFKNIQKRFCFLTCDAASYLGDNLRGIGSKFVSSSQMLTSCSECPTLFVDAETLLSCGLLDKLKFSVLELQEYLDTYNNRKEATLSWLANCKATFAGGSRDGVITCQPGDSEEKQLELCQRLYKLHFQLLLLYQSYCKLIGQVHEVSSVPELLNMSRELSDLKRNLKEATAAIATDPLYIEGAWSEPTFTSTEAAIQSMLECLKNNELGKALRQIKECRSLWPNDIFGSSSDDEVQTLLNIYFRHQTLGQTGTYALVGSNHSLTEICTKLMELNMEIRDMIRRAQSYRVLTAFLPDSSVSGTSL", "length": 2966, "header": "tr|A0A9J7K637-1|A0A9J7K637_CRIGR Isoform 1 of Protein furry homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=Fry PE=4 SV=1 CANONICAL=A0A9J7K637-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1915, "start_aa": "Thr", "end_pos": 1915, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1915", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 2515, "start_aa": "Thr", "end_pos": 2515, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2515", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K637", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K637" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K637", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K637" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100759522", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759522", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cell cortex", "id": "GO:0005938", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005938", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K637", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K637" } ], "pmid": "" }, { "name": "site of polarized growth", "id": "GO:0030427", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030427", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K637", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K637" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "neuron projection development", "id": "GO:0031175", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031175", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K637", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K637" } ], "pmid": "" }, { "name": "cell morphogenesis", "id": "GO:0000902", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000902", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K637", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K637" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 101, "end_pos": 103, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1435, "end_pos": 1437, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1528, "end_pos": 1530, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1736, "end_pos": 1738, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1871, "end_pos": 1873, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1894, "end_pos": 1896, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1919, "end_pos": 1921, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1971, "end_pos": 1973, "annotation": "n_glycosylation_sequon" }, { "start_pos": 23, "end_pos": 25, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2495, "end_pos": 2497, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2816, "end_pos": 2818, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2922, "end_pos": 2924, "annotation": "n_glycosylation_sequon" }, { "start_pos": 671, "end_pos": 673, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7K637", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K637" }, { "id": "PF14228", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14228" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cell morphogenesis central region", "eco_id": "ECO_0000259", "start_pos": 1159, "end_pos": 1319, "start_aa": "Leu", "end_aa": "Leu", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7K637", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K637" }, { "id": "PF14225", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14225" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cell morphogenesis protein C-terminal", "eco_id": "ECO_0000259", "start_pos": 1992, "end_pos": 2244, "start_aa": "Ala", "end_aa": "Ser", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7K637", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K637" }, { "id": "PF14222", "database": "Pfam", "url": 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This record is derived from a genomic sequence (NW_003615236.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035292410", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035292410" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K644", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K644" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Homer2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K644", "locus": {} } ], "crossref": [ { "id": "A0A9J7K644", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K644", "database": "AlphaFoldDB", "categories": [] }, { "id": "100771332", "url": "https://www.ncbi.nlm.nih.gov/gene/100771332", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000697", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000697", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045027", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045027", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100771332", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771332", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K644", "url": "https://www.orthodb.org/?gene=A0A9J7K644", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10918", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10918", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00568", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00568", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035292410", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035292410", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GUP0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GUP0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GUP0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GUP0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K644", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K644", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K644-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K644-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFQEVKEAARLARDKSQEKIETSSNHSQESGCETPSSTQASSVNGTDDEKASHASPADTHLKSENDKLKIALTQSAANVKKWEIELQTLRESNARLTTALQESVASVEQWKKQFSICRDENDRLRSKIEQLEEQCSEINREKEKNTQLKSRIEELESELREKEMELKDLRKQSEIIPQLMSECEYVSEKLEAAERDNQNLEDKVRSLKTDIEESKYRQRHLKGELKSFLEVLDGKIDDLHDFRRGLSKLGTDN", "length": 290, "header": "tr|A0A9J7K644-1|A0A9J7K644_CRIGR Isoform 1 of Homer protein homolog 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Homer2 PE=4 SV=1 CANONICAL=A0A9J7K644-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GUP0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GUP0/entry", "sequence": { "sequence": "MTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFQEVKEAARLARDKSQEKIETSSNHSQASSVNGTDDEKASHASPADTHLKSENDKLKIALTQSAANVKKWEIELQTLRESNARLTTALQESVASVEQWKKQFSICRDENDRLRSKIEQLEEQCSEINREKEKNTQLKSRIEELESELREKEMELKDLRKQSEIIPQLMSECEYVSEKLEAAERDNQNLEDKVRSLKTDIEESKYRQRHLKGELKSFLEVLDGKIDDLHDFRRGLSKLGTDN", "length": 279, "header": "tr|A0A9J7GUP0-1|A0A9J7GUP0_CRIGR Computationally mapped isoform of Homer protein homolog 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Homer2 PE=4 SV=1 CANONICAL=A0A9J7K644-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K644-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K644/entry", "sequence": { "sequence": "MTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFQEVKEAARLARDKSQEKIETSSNHSQESGCETPSSTQASSVNGTDDEKASHASPADTHLKSENDKLKIALTQSAANVKKWEIELQTLRESNARLTTALQESVASVEQWKKQFSICRDENDRLRSKIEQLEEQCSEINREKEKNTQLKSRIEELESELREKEMELKDLRKQSEIIPQLMSECEYVSEKLEAAERDNQNLEDKVRSLKTDIEESKYRQRHLKGELKSFLEVLDGKIDDLHDFRRGLSKLGTDN", "length": 290, "header": "tr|A0A9J7K644-1|A0A9J7K644_CRIGR Isoform 1 of Homer protein homolog 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Homer2 PE=4 SV=1 CANONICAL=A0A9J7K644-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K644", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K644" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K644", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K644" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100771332", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771332", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "G protein-coupled glutamate receptor binding", "id": "GO:0035256", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035256", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K644", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K644" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cell projection", "id": "GO:0042995", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042995", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K644", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K644" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 62, "end_pos": 64, "annotation": "n_glycosylation_sequon" }, { "start_pos": 81, "end_pos": 83, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7K644", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K644" }, { "id": "PS50229", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50229" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "WH1", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 46, "start_aa": "Met", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 62, "end_pos": 64 }, { "start_pos": 81, "end_pos": 83 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7K646-1", "uniprot_ac": "A0A9J7K646", "uniprot_id": "A0A9J7K646_CRIGR", "mass": { "chemical_mass": 52104.0, "monoisotopic_mass": 52104.0 }, "refseq": { "ac": "XP_003503783", "name": "LOW QUALITY PROTEIN: F-box/LRR-repeat protein 21", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503783" }, "gene_names": [ { "name": "Fbxl21p", "type": "recommended", "evidence": [ { "id": "A0A9J7K646", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K646" } ] }, { "name": "Fbxl21p", "type": "synonym", "evidence": [ { "id": "XP_003503783", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503783" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: F-box/LRR-repeat protein 21", "type": "synonym", "evidence": [ { "id": "XP_003503783", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503783" }, { "id": "A0A9J7K646", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K646/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613997.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 18, 2018 this sequence version replaced XP_003503783.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003503783", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503783" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K646", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K646" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fbxl21p", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K646", "locus": {} } ], "crossref": [ { "id": "A0A9J7K646", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K646", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd22179", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22179", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd23956", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23956", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100753212", "url": "https://www.ncbi.nlm.nih.gov/gene/100753212", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100753212", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753212", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K646", "url": "https://www.orthodb.org/?gene=A0A9J7K646", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16134", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16134", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16134:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16134:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12937", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12937", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003503783", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503783", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K646", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K646", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K646-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K646-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDVGEYPMAASSFHWFSVNCNLETTFRMKRNNFSTLNKAVPTPPAVKQPKRGLCTSLTQTHALSVLLDWGTLPHHVILHIFRYLPLIDRARASSVCRRWNEVFHIPDLWRKFEFELNQSATSYFKSTHPDLIQQIIKKHAAHLQYVSFKVDSSTESAEAACDILSQLVNCSIQTLGLISTAKPSFMNVPKSHFVSALTVVFVNSKSLSSIKIEDTPVDDPSLKILVANNSDTLRLLKMSSCPHVSSDGILCVADHCQGLRELALNYYILSDELLLALSSETHVNLEHLRIDVVSENPGQIKFHSIKKHSWDALIKHSPGVNVVMYFFLYEEEFETFFKEETPVTHLYFGRSVSRTILGRIGLNCPRLIELVVCANGLQPLDSELIRIAQHCKNLTALGLSECEVSCSAFIEFVRLCGRRLTQLSVMEEVLVPDDNCTPDEVHTEVSKYLGRVWFPDVMPVW", "length": 461, "header": "tr|A0A9J7K646-1|A0A9J7K646_CRIGR Isoform 1 of LOW QUALITY PROTEIN: F-box/LRR-repeat protein 21 OS=Cricetulus griseus OX=10029 GN=Fbxl21p PE=4 SV=1 CANONICAL=A0A9J7K646-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K646-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K646/entry", "sequence": { "sequence": "MDVGEYPMAASSFHWFSVNCNLETTFRMKRNNFSTLNKAVPTPPAVKQPKRGLCTSLTQTHALSVLLDWGTLPHHVILHIFRYLPLIDRARASSVCRRWNEVFHIPDLWRKFEFELNQSATSYFKSTHPDLIQQIIKKHAAHLQYVSFKVDSSTESAEAACDILSQLVNCSIQTLGLISTAKPSFMNVPKSHFVSALTVVFVNSKSLSSIKIEDTPVDDPSLKILVANNSDTLRLLKMSSCPHVSSDGILCVADHCQGLRELALNYYILSDELLLALSSETHVNLEHLRIDVVSENPGQIKFHSIKKHSWDALIKHSPGVNVVMYFFLYEEEFETFFKEETPVTHLYFGRSVSRTILGRIGLNCPRLIELVVCANGLQPLDSELIRIAQHCKNLTALGLSECEVSCSAFIEFVRLCGRRLTQLSVMEEVLVPDDNCTPDEVHTEVSKYLGRVWFPDVMPVW", "length": 461, "header": "tr|A0A9J7K646-1|A0A9J7K646_CRIGR Isoform 1 of LOW QUALITY PROTEIN: F-box/LRR-repeat protein 21 OS=Cricetulus griseus OX=10029 GN=Fbxl21p PE=4 SV=1 CANONICAL=A0A9J7K646-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 42, "start_aa": "Thr", "end_pos": 42, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr42", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035297502", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035297502" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K669", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K669" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Btbd16", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K669", "locus": {} } ], "crossref": [ { "id": "A0A9J7K669", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K669", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd18492", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18492", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100762672", "url": "https://www.ncbi.nlm.nih.gov/gene/100762672", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042833", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042833", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048859", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048859", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056426", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056426", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762672", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762672", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K669", "url": "https://www.orthodb.org/?gene=A0A9J7K669", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46843", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46843", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46843:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46843:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF21059", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21059", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23998", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23998", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035297502", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035297502", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K669", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K669", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K669-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K669-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCGVAECENQTLAPVSQLNSPPFYPRHDTHLFPSVSAPPPFIKMLTQVSRSFHQKVGNGRAEKMSKNRLERRIVGATNRWRFPQQYFCGDLLGLSQMCNVLNVELDEALKDPDRFCVSHFQKIFSNIDNSDIQSGEADVILQCLGFKWELHHSQIFQSETLAKLYLTALKQNTKSQAKELHKILKARPCERIKEKSPVKKMIISLKINDPAVTRVAFALALKNLYMNEVEMNVDNVLGVLASAHILQFNHLFQKCVNMMLSRLTPSTIKNFYLAGCKYKEEQLTIACEKWLAINLVPLVGTQIHLRHIPQHLLHKVLQSPRLFTFSEFHLLKTLLMWVYLQMNSKVQVIPIHETMLAYFSSFSKKCCFLEQDAGQTWTPLFLCLRLHGITSGKDLEELKHINFFPESWLVRVTANHYHALESGGNMVHLKDLSTQAMRFGLLFRQEYTTYSETISIYGYFFEIKGIKHDSTSYSFSMQRIRHTDLDCPSPICEHSAISLRAERLVKYEIRAQTLVDGKWQEFRTNQITQKFGFIKPGCKSHALKIQTLGIPIYASFAFIFPAS", "length": 563, "header": "tr|A0A9J7K669-1|A0A9J7K669_CRIGR Isoform 1 of BTB/POZ domain-containing protein 16 OS=Cricetulus griseus OX=10029 GN=Btbd16 PE=4 SV=1 CANONICAL=A0A9J7K669-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K669-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K669/entry", "sequence": { "sequence": "MCGVAECENQTLAPVSQLNSPPFYPRHDTHLFPSVSAPPPFIKMLTQVSRSFHQKVGNGRAEKMSKNRLERRIVGATNRWRFPQQYFCGDLLGLSQMCNVLNVELDEALKDPDRFCVSHFQKIFSNIDNSDIQSGEADVILQCLGFKWELHHSQIFQSETLAKLYLTALKQNTKSQAKELHKILKARPCERIKEKSPVKKMIISLKINDPAVTRVAFALALKNLYMNEVEMNVDNVLGVLASAHILQFNHLFQKCVNMMLSRLTPSTIKNFYLAGCKYKEEQLTIACEKWLAINLVPLVGTQIHLRHIPQHLLHKVLQSPRLFTFSEFHLLKTLLMWVYLQMNSKVQVIPIHETMLAYFSSFSKKCCFLEQDAGQTWTPLFLCLRLHGITSGKDLEELKHINFFPESWLVRVTANHYHALESGGNMVHLKDLSTQAMRFGLLFRQEYTTYSETISIYGYFFEIKGIKHDSTSYSFSMQRIRHTDLDCPSPICEHSAISLRAERLVKYEIRAQTLVDGKWQEFRTNQITQKFGFIKPGCKSHALKIQTLGIPIYASFAFIFPAS", "length": 563, "header": "tr|A0A9J7K669-1|A0A9J7K669_CRIGR Isoform 1 of BTB/POZ domain-containing protein 16 OS=Cricetulus griseus OX=10029 GN=Btbd16 PE=4 SV=1 CANONICAL=A0A9J7K669-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035301498", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301498" } ] }, { "annotation": "May be involved in transcriptional regulation.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K9N2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9N2#function" }, { "database": "UniProtKB", "id": "ARBA00003767", "url": "https://www.uniprot.org/uniprotkb/ARBA00003767#function" }, { "database": "UniProtKB", "id": "A0A9J7K699", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K699#function" }, { "database": "UniProtKB", "id": "A0A9J7GXF1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GXF1#function" }, { "database": "UniProtKB", "id": "A0A9J7GZH1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZH1#function" }, { "database": "UniProtKB", "id": "A0A9J7H0R4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0R4#function" }, { "database": "UniProtKB", "id": "A0A9J7H2M1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2M1#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K699", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K699" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100767289", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K699", "locus": {} } ], "crossref": [ { "id": "A0A9J7K699", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K699", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100767289", "url": "https://www.ncbi.nlm.nih.gov/gene/100767289", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050169", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050169", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050758", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050758", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100767289", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767289", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K699", "url": "https://www.orthodb.org/?gene=A0A9J7K699", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23232", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23232", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23232:SF151", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23232:SF151", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23234", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23234", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23234:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23234:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24381", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24381", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24381:SF136", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24381:SF136", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24381:SF390", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24381:SF390", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13465", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13465", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035301498", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301498", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GXF1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GXF1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GXF1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GXF1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GZH1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZH1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GZH1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZH1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H0R4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0R4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H0R4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0R4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H1I7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1I7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H1I7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1I7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H220", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H220", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H220-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H220-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H2M1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2M1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H2M1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2M1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K699", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K699", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K699-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K699-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K9N2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9N2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K9N2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9N2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K9S8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9S8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K9S8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9S8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNVQQKFSTLFWPPTLCPAPLFGLGKPADSTIVSTEWHTLLLQCDIFQDAVTCEDVHVNFTHEEWALLDSCQKSLYKDVMLETYWNLTSIGYKWEDHSIEEYCQSSGRHGSPVNCHYGYKPCLHQRYVKKHSISVSPGTIRRYDVITTVRKHDDCETSLPSLFGEKANENKDDGNSQVCVGSVCTDSMTHSIRKCYLSNHCAEILSSSSSYQRHKKSHVGRGSEKCELCTKDFCHHRYLQTHKTTINEENLYECKAIRFESSLHQRTHLEEKPCEYNQSDKVSAYHSLHQVYRTHSVVKNNEYQQYDKTFASPSFLQMYKRILGGEKPYECNQCGKSFAEKSNLHRHEKTHTGEKPHECNHCGKAFAHKYKLLIHERIHNGEKPYECNRCGKAFVEKCNLLSHERSHTGEKPYECNQCGKAFAQKSSLHNHERIHTGEKPYKCNQCSKAFTQNGSLRSHERIHTGEKPYECTQCGKAFAQKSNLLSHERRHTGENPFLCNEHAKSFAEKNNLSPERSHAAEKPYECNLCGKAFARKSYLCSHERIHTGEKPYVCNQCGKAFAHNSHLHSHERIHTGEKPYECNQCDKAFSRKSHLHRHERIHTREKPCGYNQCGRDFVFNSNLQLKETSYWRQVL", "length": 635, "header": "tr|A0A9J7K699-1|A0A9J7K699_CRIGR Isoform 1 of Zinc finger protein 431 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100767289 PE=3 SV=1 CANONICAL=A0A9J7K699-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GXF1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GXF1/entry", "sequence": { "sequence": "MNVQQKFSTLFWPPTLCPAPLFGLGKPADSTIVSTEWHTLLLQCDIFQDAVTCEDVHVNFTHEEWALLDSCQKSLYKDVMLETYWNLTSIGYKWEDHSIEEYCQSSGRHGRYLQTHKTTINEENLYECKAIRFESSLHQRTHLEEKPCEYNQSDKVSAYHSLHQVYRTHSVVKNNEYQQYDKTFASPSFLQMYKRILGGEKPYECNQCGKSFAEKSNLHRHEKTHTGEKPHECNHCGKAFAHKYKLLIHERIHNGEKPYECNRCGKAFVEKCNLLSHERSHTGEKPYECNQCGKAFAQKSSLHNHERIHTGEKPYKCNQCSKAFTQNGSLRSHERIHTGEKPYECTQCGKAFAQKSNLLSHERRHTGENPFLCNEHAKSFAEKNNLSPERSHAAEKPYECNLCGKAFARKSYLCSHERIHTGEKPYVCNQCGKAFAHNSHLHSHERIHTGEKPYECNQCDKAFSRKSHLHRHERIHTREKPCGYNQCGRDFVFNSNLQLKETSYWRQVL", "length": 509, "header": "tr|A0A9J7GXF1-1|A0A9J7GXF1_CRIGR Computationally mapped isoform of Zinc finger protein OZF isoform X8 OS=Cricetulus griseus OX=10029 GN=LOC100767289 PE=3 SV=1 CANONICAL=A0A9J7K699-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GZH1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZH1/entry", "sequence": { "sequence": "MDAVTCEDVHVNFTHEEWALLDSCQKSLYKDVMLETYWNLTSIGYKWEDHSIEEYCQSSGRHGSPVNCHYGYKPCLHQRYVKKHSISVSPGTIRRYDVITTVRKHDDCETSLPSLFGEKANENKDDGNSQVCVGSVCTDSMTHSIRKCYLSNHCAEILSSSSSYQRHKKSHVGRGSEKCELCTKDFCHHRYLQTHKTTINEENLYECKAIRFESSLHQRTHLEEKPCEYNQSDKVSAYHSLHQVYRTHSVVKNNEYQQYDKTFASPSFLQMYKRILGGEKPYECNQCGKSFAEKSNLHRHEKTHTGEKPHECNHCGKAFAHKYKLLIHERIHNGEKPYECNRCGKAFVEKCNLLSHERSHTGEKPYECNQCGKAFAQKSSLHNHERIHTGEKPYKCNQCSKAFTQNGSLRSHERIHTGEKPYECTQCGKAFAQKSNLLSHERRHTGENPFLCNEHAKSFAEKNNLSPERSHAAEKPYECNLCGKAFARKSYLCSHERIHTGEKPYVCNQCGKAFAHNSHLHSHERIHTGEKPYECNQCDKAFSRKSHLHRHERIHTREKPCGYNQCGRDFVFNSNLQLKETSYWRQVL", "length": 588, "header": "tr|A0A9J7GZH1-1|A0A9J7GZH1_CRIGR Computationally mapped isoform of Zinc finger protein 431 isoform X5 OS=Cricetulus griseus OX=10029 GN=LOC100767289 PE=3 SV=1 CANONICAL=A0A9J7K699-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H0R4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0R4/entry", "sequence": { "sequence": "MTFCHHFSDDRKQLLFHHVMSLLSSRISLITKDAVTCEDVHVNFTHEEWALLDSCQKSLYKDVMLETYWNLTSIGYKWEDHSIEEYCQSSGRHGSPVNCHYGYKPCLHQRYVKKHSISVSPGTIRRYDVITTVRKHDDCETSLPSLFGEKANENKDDGNSQVCVGSVCTDSMTHSIRKCYLSNHCAEILSSSSSYQRHKKSHVGRGSEKCELCTKDFCHHRYLQTHKTTINEENLYECKAIRFESSLHQRTHLEEKPCEYNQSDKVSAYHSLHQVYRTHSVVKNNEYQQYDKTFASPSFLQMYKRILGGEKPYECNQCGKSFAEKSNLHRHEKTHTGEKPHECNHCGKAFAHKYKLLIHERIHNGEKPYECNRCGKAFVEKCNLLSHERSHTGEKPYECNQCGKAFAQKSSLHNHERIHTGEKPYKCNQCSKAFTQNGSLRSHERIHTGEKPYECTQCGKAFAQKSNLLSHERRHTGENPFLCNEHAKSFAEKNNLSPERSHAAEKPYECNLCGKAFARKSYLCSHERIHTGEKPYVCNQCGKAFAHNSHLHSHERIHTGEKPYECNQCDKAFSRKSHLHRHERIHTREKPCGYNQCGRDFVFNSNLQLKETSYWRQVL", "length": 619, "header": "tr|A0A9J7H0R4-1|A0A9J7H0R4_CRIGR Computationally mapped isoform of Zinc finger protein 431 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100767289 PE=3 SV=1 CANONICAL=A0A9J7K699-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H1I7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1I7/entry", "sequence": { "sequence": "MNVQQKFSTLFWPPTLCPAPLFGLGKPADSTIVSTEWHTLLLQCDIFQDAVTCEDVHVNFTHEEWALLDSCQKSLYKDVMLETYWNLTSIGYKWEDHSIEEYCQSSGRHGRFSIVTEDLLSTLL", "length": 124, "header": "tr|A0A9J7H1I7-1|A0A9J7H1I7_CRIGR Computationally mapped isoform of Zinc finger protein 431 isoform X12 OS=Cricetulus griseus OX=10029 GN=LOC100767289 PE=4 SV=1 CANONICAL=A0A9J7K699-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H220-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H220/entry", "sequence": { "sequence": "MNVQQKFSTLFWPPTLCPAPLFGLGKPADSTIVSTEWHTLLLQCDIFQDAVTCEDVHVNFTHEEWALLDSCQKSLYKDVMLETYWNLTSIGYKWEDHSIEEYCQSSGRHGSPVNCHYGYKPCLHQRYVKKHSISVSPGTIRRYDVITTVRKHDDCETSLPSLFGEKANENKDDGNSQVLHCN", "length": 182, "header": "tr|A0A9J7H220-1|A0A9J7H220_CRIGR Computationally mapped isoform of Zinc finger protein 124 isoform X11 OS=Cricetulus griseus OX=10029 GN=LOC100767289 PE=4 SV=1 CANONICAL=A0A9J7K699-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H2M1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2M1/entry", "sequence": { "sequence": "MSLLSSRISLITKDAVTCEDVHVNFTHEEWALLDSCQKSLYKDVMLETYWNLTSIGYKWEDHSIEEYCQSSGRHGSPVNCHYGYKPCLHQRYVKKHSISVSPGTIRRYDVITTVRKHDDCETSLPSLFGEKANENKDDGNSQVCVGSVCTDSMTHSIRKCYLSNHCAEILSSSSSYQRHKKSHVGRGSEKCELCTKDFCHHRYLQTHKTTINEENLYECKAIRFESSLHQRTHLEEKPCEYNQSDKVSAYHSLHQVYRTHSVVKNNEYQQYDKTFASPSFLQMYKRILGGEKPYECNQCGKSFAEKSNLHRHEKTHTGEKPHECNHCGKAFAHKYKLLIHERIHNGEKPYECNRCGKAFVEKCNLLSHERSHTGEKPYECNQCGKAFAQKSSLHNHERIHTGEKPYKCNQCSKAFTQNGSLRSHERIHTGEKPYECTQCGKAFAQKSNLLSHERRHTGENPFLCNEHAKSFAEKNNLSPERSHAAEKPYECNLCGKAFARKSYLCSHERIHTGEKPYVCNQCGKAFAHNSHLHSHERIHTGEKPYECNQCDKAFSRKSHLHRHERIHTREKPCGYNQCGRDFVFNSNLQLKETSYWRQVL", "length": 600, "header": "tr|A0A9J7H2M1-1|A0A9J7H2M1_CRIGR Computationally mapped isoform of Zinc finger protein 431 isoform X9 OS=Cricetulus griseus OX=10029 GN=LOC100767289 PE=3 SV=1 CANONICAL=A0A9J7K699-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K699-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K699/entry", "sequence": { "sequence": "MNVQQKFSTLFWPPTLCPAPLFGLGKPADSTIVSTEWHTLLLQCDIFQDAVTCEDVHVNFTHEEWALLDSCQKSLYKDVMLETYWNLTSIGYKWEDHSIEEYCQSSGRHGSPVNCHYGYKPCLHQRYVKKHSISVSPGTIRRYDVITTVRKHDDCETSLPSLFGEKANENKDDGNSQVCVGSVCTDSMTHSIRKCYLSNHCAEILSSSSSYQRHKKSHVGRGSEKCELCTKDFCHHRYLQTHKTTINEENLYECKAIRFESSLHQRTHLEEKPCEYNQSDKVSAYHSLHQVYRTHSVVKNNEYQQYDKTFASPSFLQMYKRILGGEKPYECNQCGKSFAEKSNLHRHEKTHTGEKPHECNHCGKAFAHKYKLLIHERIHNGEKPYECNRCGKAFVEKCNLLSHERSHTGEKPYECNQCGKAFAQKSSLHNHERIHTGEKPYKCNQCSKAFTQNGSLRSHERIHTGEKPYECTQCGKAFAQKSNLLSHERRHTGENPFLCNEHAKSFAEKNNLSPERSHAAEKPYECNLCGKAFARKSYLCSHERIHTGEKPYVCNQCGKAFAHNSHLHSHERIHTGEKPYECNQCDKAFSRKSHLHRHERIHTREKPCGYNQCGRDFVFNSNLQLKETSYWRQVL", "length": 635, "header": "tr|A0A9J7K699-1|A0A9J7K699_CRIGR Isoform 1 of Zinc finger protein 431 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100767289 PE=3 SV=1 CANONICAL=A0A9J7K699-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K9N2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9N2/entry", "sequence": { "sequence": "MHARQECYLTEDAVTCEDVHVNFTHEEWALLDSCQKSLYKDVMLETYWNLTSIGYKWEDHSIEEYCQSSGRHGSPVNCHYGYKPCLHQRYVKKHSISVSPGTIRRYDVITTVRKHDDCETSLPSLFGEKANENKDDGNSQVCVGSVCTDSMTHSIRKCYLSNHCAEILSSSSSYQRHKKSHVGRGSEKCELCTKDFCHHRYLQTHKTTINEENLYECKAIRFESSLHQRTHLEEKPCEYNQSDKVSAYHSLHQVYRTHSVVKNNEYQQYDKTFASPSFLQMYKRILGGEKPYECNQCGKSFAEKSNLHRHEKTHTGEKPHECNHCGKAFAHKYKLLIHERIHNGEKPYECNRCGKAFVEKCNLLSHERSHTGEKPYECNQCGKAFAQKSSLHNHERIHTGEKPYKCNQCSKAFTQNGSLRSHERIHTGEKPYECTQCGKAFAQKSNLLSHERRHTGENPFLCNEHAKSFAEKNNLSPERSHAAEKPYECNLCGKAFARKSYLCSHERIHTGEKPYVCNQCGKAFAHNSHLHSHERIHTGEKPYECNQCDKAFSRKSHLHRHERIHTREKPCGYNQCGRDFVFNSNLQLKETSYWRQVL", "length": 598, "header": "tr|A0A9J7K9N2-1|A0A9J7K9N2_CRIGR Computationally mapped isoform of Zinc finger protein 431 isoform X4 OS=Cricetulus griseus OX=10029 GN=LOC100767289 PE=3 SV=1 CANONICAL=A0A9J7K699-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K9S8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9S8/entry", "sequence": { "sequence": "MNVQQKFSTLFWPPTLCPAPLFGLGKPADSTIVSTEWHTLLLQCDIFQDAVTCEDVHVNFTHEEWALLDSCQKSLYKDVMLETYWNLTSIGYKWEDHSIEEYCQSSGRHGSPVNCHYGYKPCLHQRYVKKHSISVSPGTIRRYDVITTVRKHDDCETSLPSLFGEKANENKDDGNSQVSSNTQNYH", "length": 186, "header": "tr|A0A9J7K9S8-1|A0A9J7K9S8_CRIGR Computationally mapped isoform of Zinc finger protein 124 isoform X10 OS=Cricetulus griseus OX=10029 GN=LOC100767289 PE=4 SV=1 CANONICAL=A0A9J7K699-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K699", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K699" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K699", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K699" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100767289", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767289", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K699", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K699" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", 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"database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035299413" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035299413", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035299413" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K7U8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7U8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Dock6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7U8", "locus": {} } ], "crossref": [ { "id": "cd08696", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08696", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100769954", "url": "https://www.ncbi.nlm.nih.gov/gene/100769954", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026791", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026791", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027007", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027007", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027357", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027357", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037808", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037808", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043161", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043161", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043162", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043162", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046769", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046769", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046773", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046773", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769954", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769954", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K7U8", "url": "https://www.orthodb.org/?gene=A0A9J7K7U8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23317", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23317", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23317:SF65", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23317:SF65", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06920", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06920", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14429", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14429", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20421", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20421", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20422", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20422", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF28208", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28208", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035299413", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035299413", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K6F0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K6F0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K6F0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K6F0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K7U8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7U8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K7U8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7U8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVMKEADAVKNKDKLERLRLAAEQFCTRLGRYRMPFAWTAVHLANIVSSVGPQDRDSDSEGERRPTWAERRRRGPQDRGCSGDDACSFSSFRPATLTVTNFFKQEAERLSDEDLFKFLADMRRPSSLLRRLRPVTAQLKIDISPAPENLHFCLSPELLHVKPYPDPRGRPTKEVLEFPAREVYAPHTCYRNLLFVYPHSLNFSSRQGSVRNLAVRIQYMAGEDQSQALPVIFGKSSCSEFTREAFTPVIYHNKSPEFYEEFKLRLPACVTENHHLFFTFYHVSCQPRPGTALETPVGFTWIPLLQHGRLRTGPFCLPVSVDQPPPSYSVLTPDVALPGMRWVDGHKGVFSVELTAVSSVHPQDPHLDKFFTLVHVLEEGTFPFRLKETVLSEATMEQELRASLAALRLASPEPLVAFSHHVLDKLVRLVVRPPIIGGQIVNLGRGAFEAMAHVASLVHRSLEAVQDSRGHCPLLAAYVHYAFHLPGGDLSLPGGVAPATVQAATLARGSGRPTSLYLTRSKSISSSNPDLAVAPGSVDDEVSRILATKDIDRSSSRASSYLEASSSSLPPPQPRHTVQKLLHEELALQWVVSGSTVREVALQHAWFFFQLMIKSMELHLLLGQRLDTPRKLRFPGRFLDDISALVASVGLEVITRVHKDMELAERLNASLAFFLSDLLSIADRGYIFSLVRAHYKQVATRLQSAPNPAALLTLRMDFTRILCSHEHYVTLNLPCCPLSPPASPSPSVSSTTSQSSTFSSQAPDPKVTSMFELSGPFRQQHFLSGLLLTELALALEPEAEGASVLHKKAISAVHSLLCSHDVDPRYTETTVKAKVAELYLPLLSLARDTLPRLHGFAEGSGQRSRLASMLDSDTEGEGDIGGTINPSVAMAIAGGPLAPGSRTSISQGPSTAARSGCPLSAESSRTLLVCVLWVLKNAEPALLQRWAADLALPQLGRLLDLLYLCLAAFEYKGKKAFERINSLTFKKSLDMKARLEEAILGTIGARQEMVRRSRERSPFGNQENVRWRKSVTHWRQTSDRVDKPKDEMEHEALVDGNLATEASLVVLDMLEIIVQTVMLSEARESILGAVLKVVLYSLGSAQSALFLQHGLATQRALVSKFPELLFEEDTELCADLCLRLLRHCGSRISSIRTHASASLYLLMRQNFEIGHNFARVKMLVTMSLSSLVGTAQNFSEEHLRRSLKTILTYAEEDIGLRDSTFAEQVQDLMFNLHMILTDTVKMKEHQEDPEMLMDLMYRIARGYQGSPDLRLTWLQNMAGKHAELGNHAEAAQCMVHAAALVAEYLALLEDSRHLPVGCVSFQNVSSNVLEESAISDDILSPDEEGFCSGKNFTELGLVGLLEQAAAYFTMGGLYEAVNEVYKNLIPILEAHRDYKKLAAVHGKLQEAFTKIMHQSSGWERVFGTYFRVGFYGARFGDLDEQEFVYKEPSITKLAEISHRLEEFYTERFGDDVVEIIKDSNPVDKSKLDPQKAYIQITYVEPHFDTYELKDRVTYFDRNYGLRAFLFCTPFTPDGRAHGGLVEQHKRKTLLSTEHAFPYIKTRIRVCHREETVLTPVEVAIEDMQKKTRELAFATEQDPPDAKMLQMVLQGSVGPTVNQGPLEVAQVFLAEIPEDPKLFRHHNKLRLCFKDFCKKCEDALRKNKALIGPDQKEYHRELERHYSRLREALQPLLTQRLPQLLAPSSSSLRNSLNRSSFRKAEL", "length": 1720, "header": "tr|A0A9J7K7U8-1|A0A9J7K7U8_CRIGR Isoform 1 of Dedicator of cytokinesis protein 6 isoform X2 OS=Cricetulus griseus OX=10029 GN=Dock6 PE=3 SV=1 CANONICAL=A0A9J7K7U8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K6F0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K6F0/entry", "sequence": { "sequence": "MVMKEADAVKNKDKLERLRLAAEQFCTRLGRYRMPFAWTAVHLANIVSSVGPQDRDSDSEGERRPTWAERRRRGPQDRGCSGDDACSFSSFRPATLTVTNFFKQEAERLSDEDLFKFLADMRRPSSLLRRLRPVTAQLKIDISPAPENLHFCLSPELLHVKPYPDPRGRPTKEVLEFPAREVYAPHTCYRNLLFVYPHSLNFSSRQGSVRNLAVRIQYMAGEDQSQALPVIFGKSSCSEFTREAFTPVIYHNKSPEFYEEFKLRLPACVTENHHLFFTFYHVSCQPRPGTALETPVGFTWIPLLQHGRLRTGPFCLPVSVDQPPPSYSVLTPDVALPGMRWVDGHKGVFSVELTAVSSVHPQDPHLDKFFTLVHVLEEGTFPFRLKETVLSEATMEQELRASLAALRLASPEPLVAFSHHVLDKLVRLVVRPPIIGGQIVNLGRGAFEAMAHVASLVHRSLEAVQDSRGHCPLLAAYVHYAFHLPGGDLSLPGGVAPATVQAATLARGSGRPTSLYLTRSKSISSSNPDLAVAPGSVDDEVSRILATKDIDRSSSRASSYLEASSSSLPPPQPRHTVQKLLHEELALQWVVSGSTVREVALQHAWFFFQLMIKSMELHLLLGQRLDTPRKLRFPGRFLDDISALVASVGLEVITRVHKDMELAERLNASLAFFLSDLLSIADRGYIFSLVRAHYKQVATRLQSAPNPAALLTLRMDFTRILCSHEHYVTLNLPCCPLSPPASPSPSVSSTTSQSSTFSSQAPDPKVTSMFELSGPFRQQHFLSGLLLTELALALEPEAEGASVLHKKAISAVHSLLCSHDVDPRYTETTVKAKVAELYLPLLSLARDTLPRLHGFAEGSGQRSRLASMLDSDTEGEGDIGGTINPSVAMAIAGGPLAPGSRTSISQGPSTAARSGCPLSAESSRTLLVCVLWVLKNAEPALLQRWAADLALPQLGRLLDLLYLCLAAFEYKGKKAFERINSLTFKKSLDMKARLEEAILGTIGARQEMVRRSRERSPFGNQENVRWRKSVTHWRQTSDRVDKPKDEMEHEALVDGNLATEASLVVLDMLEIIVQTVMLSEARESILGAVLKVVLYSLGSAQSALFLQHGLATQRALVSKFPELLFEEDTELCADLCLRLLRHCGSRISSIRTHASASLYLLMRQNFEIGHNFARVKMLVTMSLSSLVGTAQNFSEEHLRRSLKTILTYAEEDIGLRDSTFAEQVQDLMFNLHMILTDTVKMKEHQEDPEMLMDLMYRIARGYQGSPDLRLTWLQNMAGKHAELGNHAEAAQCMVHAAALVAEYLALLEDSRHLPVGCVSFQNVSSNVLEESAISDDILSPDEEGFCSGKNFTELGLVGLLEQAAAYFTMGGLYEAVNEVYKNLIPILEAHRDYKKLAAVHGKLQEAFTKIMHQSSGWERVFGTYFRVGFYGARFGDLDEQEFVYKEPSITKLAEISHRLEAYIQITYVEPHFDTYELKDRVTYFDRNYGLRAFLFCTPFTPDGRAHGGLVEQHKRKTLLSTEHAFPYIKTRIRVCHREETVLTPVEVAIEDMQKKTRELAFATEQDPPDAKMLQMVLQGSVGPTVNQGPLEVAQVFLAEIPEDPKLFRHHNKLRLCFKDFCKKCEDALRKNKALIGPDQKEYHRELERHYSRLREALQPLLTQRLPQLLAPSSSSLRNSLNRSSFRKAEL", "length": 1690, "header": "tr|A0A9J7K6F0-1|A0A9J7K7U8_CRIGR Computationally mapped isoform of Dedicator of cytokinesis protein 6 isoform X2 OS=Cricetulus griseus OX=10029 GN=Dock6 PE=3 SV=1 CANONICAL=A0A9J7K7U8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K7U8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7U8/entry", "sequence": { "sequence": "MVMKEADAVKNKDKLERLRLAAEQFCTRLGRYRMPFAWTAVHLANIVSSVGPQDRDSDSEGERRPTWAERRRRGPQDRGCSGDDACSFSSFRPATLTVTNFFKQEAERLSDEDLFKFLADMRRPSSLLRRLRPVTAQLKIDISPAPENLHFCLSPELLHVKPYPDPRGRPTKEVLEFPAREVYAPHTCYRNLLFVYPHSLNFSSRQGSVRNLAVRIQYMAGEDQSQALPVIFGKSSCSEFTREAFTPVIYHNKSPEFYEEFKLRLPACVTENHHLFFTFYHVSCQPRPGTALETPVGFTWIPLLQHGRLRTGPFCLPVSVDQPPPSYSVLTPDVALPGMRWVDGHKGVFSVELTAVSSVHPQDPHLDKFFTLVHVLEEGTFPFRLKETVLSEATMEQELRASLAALRLASPEPLVAFSHHVLDKLVRLVVRPPIIGGQIVNLGRGAFEAMAHVASLVHRSLEAVQDSRGHCPLLAAYVHYAFHLPGGDLSLPGGVAPATVQAATLARGSGRPTSLYLTRSKSISSSNPDLAVAPGSVDDEVSRILATKDIDRSSSRASSYLEASSSSLPPPQPRHTVQKLLHEELALQWVVSGSTVREVALQHAWFFFQLMIKSMELHLLLGQRLDTPRKLRFPGRFLDDISALVASVGLEVITRVHKDMELAERLNASLAFFLSDLLSIADRGYIFSLVRAHYKQVATRLQSAPNPAALLTLRMDFTRILCSHEHYVTLNLPCCPLSPPASPSPSVSSTTSQSSTFSSQAPDPKVTSMFELSGPFRQQHFLSGLLLTELALALEPEAEGASVLHKKAISAVHSLLCSHDVDPRYTETTVKAKVAELYLPLLSLARDTLPRLHGFAEGSGQRSRLASMLDSDTEGEGDIGGTINPSVAMAIAGGPLAPGSRTSISQGPSTAARSGCPLSAESSRTLLVCVLWVLKNAEPALLQRWAADLALPQLGRLLDLLYLCLAAFEYKGKKAFERINSLTFKKSLDMKARLEEAILGTIGARQEMVRRSRERSPFGNQENVRWRKSVTHWRQTSDRVDKPKDEMEHEALVDGNLATEASLVVLDMLEIIVQTVMLSEARESILGAVLKVVLYSLGSAQSALFLQHGLATQRALVSKFPELLFEEDTELCADLCLRLLRHCGSRISSIRTHASASLYLLMRQNFEIGHNFARVKMLVTMSLSSLVGTAQNFSEEHLRRSLKTILTYAEEDIGLRDSTFAEQVQDLMFNLHMILTDTVKMKEHQEDPEMLMDLMYRIARGYQGSPDLRLTWLQNMAGKHAELGNHAEAAQCMVHAAALVAEYLALLEDSRHLPVGCVSFQNVSSNVLEESAISDDILSPDEEGFCSGKNFTELGLVGLLEQAAAYFTMGGLYEAVNEVYKNLIPILEAHRDYKKLAAVHGKLQEAFTKIMHQSSGWERVFGTYFRVGFYGARFGDLDEQEFVYKEPSITKLAEISHRLEEFYTERFGDDVVEIIKDSNPVDKSKLDPQKAYIQITYVEPHFDTYELKDRVTYFDRNYGLRAFLFCTPFTPDGRAHGGLVEQHKRKTLLSTEHAFPYIKTRIRVCHREETVLTPVEVAIEDMQKKTRELAFATEQDPPDAKMLQMVLQGSVGPTVNQGPLEVAQVFLAEIPEDPKLFRHHNKLRLCFKDFCKKCEDALRKNKALIGPDQKEYHRELERHYSRLREALQPLLTQRLPQLLAPSSSSLRNSLNRSSFRKAEL", "length": 1720, "header": "tr|A0A9J7K7U8-1|A0A9J7K7U8_CRIGR Isoform 1 of Dedicator of cytokinesis protein 6 isoform X2 OS=Cricetulus griseus OX=10029 GN=Dock6 PE=3 SV=1 CANONICAL=A0A9J7K7U8-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1614, "start_aa": "Thr", "end_pos": 1614, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1614", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K6F0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K6F0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K6F0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K6F0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769954", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769954", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K7U8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7U8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": 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"MFLMNAPPVVALQSRWEAFGQPRSFCFPDCFSESKEDTSRASVSARVQMLISTLQRDKAALGMSHERVTQRGQRAERCQDTRLAPKPVVCREPPEFRACGLVADCKPLEKDEAGRHGPLEIDSDSDDSVDRDIEEAIQEYLKAKGGASEPMSRGVPCVPEPAHSCPLPIPCPPQLTPGSGSVPVGTSEDQGSTSPASMSSEDSFEQSIRAEIEQFLIEKRQHENPKCDGSVDKKSDSNESPARLRGNRETSSRAALVGTCKEFIFRKPPRLTKMSMQPRNFRPKVTTEPETPVSTRLAVHRPEAAQNRGGVRRSTPARRSKRIRNSAPVHQASDSSSDDGIEEAIQLYQLEKTRNEASGDPPLRAQLKEESPGSAQPSALPEAHRRPPSKKKLAAPKVMDTTLGSLHPDPLSKLLKDVRTSVLPGHTAAKSEAVHPATSCLADTSTELMCAEAILDISKTILPVPMEGSDRPPSMNPLFCPPPIPPRSEGDSSNIDSDDSIEQEIRTFLALKAQVGSPQPAQGPLSPPGPSGQTGIPKASLAKTPELPLGCKRKRRGGGSTIVPKKIREGKESAQDSNHIQGKGQPGHDGWDPPSQSKLPEAPGGEAEAKDQAVPSRTAGLSDAHLSQGQGGLGKVSEGKCAGEKESSEDKSSSLDSDEDLDMAIKDLLRSKRRFKKRCREPRAVCKKVRFGTTETRCGEKLSSLPGDWKDHGQQALRSCLSKCRGDNTDSPGRSPVSIFSSVAERAKLGGTGGEDASPALLPRKKSPEGTPPAKDTGVSGRPSASSPLSEDSSVDSDDSIELEIRKFLAEKAKESVRSSEPQGGPAKPEMPCRKEPTPGLQPGVCTRSQKARATPHLAEGRRGTEKSRTQAASLLSQTGKGTSRAEQSTRLPTALGRSEPALPRNTSRNNSAKVSPPSRKSASIHKDQSPRGTQTAMAESIFGQLPSCAKVGAEARGTFHLNCGSQNLLAPNPGPQADLTLPWSDFAHQSRLSSPWALNSGQGTLWTGVFGGEKEKGVTSQTGGPLSLSSGPRKGLPFLSTQLFHFGKSVSWGGKQAGLFSPNLGLPLQGPAFSAFRETQPGHSPVFGSPHLLMKDSGHWPSRKAQGSLRQQDRRNSGSEGNVLDLRYRHRVDREHQDQEALGSDASEFSDTSVEDGGSTIVSSKGL", "length": 1168, "header": "tr|A0A9J7K6Z8-1|A0A9J7K6Z8_CRIGR Isoform 1 of Protein phosphatase 1 regulatory subunit 26 OS=Cricetulus griseus OX=10029 GN=Ppp1r26 PE=4 SV=1 CANONICAL=A0A9J7K6Z8-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 771, "start_aa": "Thr", "end_pos": 771, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr771", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 838, "start_aa": "Thr", "end_pos": 838, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr838", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K6Z8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K6Z8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K6Z8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K6Z8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100756993", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756993", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein phosphatase inhibitor activity", "id": "GO:0004864", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004864", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K6Z8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K6Z8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 238, "end_pos": 240, "annotation": "n_glycosylation_sequon" }, { "start_pos": 906, "end_pos": 908, "annotation": "n_glycosylation_sequon" }, { "start_pos": 910, "end_pos": 912, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7K6Z8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K6Z8" }, { "id": "PF15740", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15740" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Protein phosphatase 1 regulatory subunit 26 N-terminal", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 816, "start_aa": "Met", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 771, 838 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 238, "end_pos": 240 }, { "start_pos": 906, "end_pos": 908 }, { "start_pos": 910, "end_pos": 912 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", 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"count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7K711-1", "uniprot_ac": "A0A9J7K711", "uniprot_id": "A0A9J7K711_CRIGR", "mass": { "chemical_mass": 109695.0, "monoisotopic_mass": 109695.0 }, "refseq": { "ac": "XP_035300110", "name": "LOW QUALITY PROTEIN: coiled-coil domain-containing protein 33", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300110" }, "gene_names": [ { "name": "Ccdc33", "type": "recommended", "evidence": [ { "id": "A0A9J7K711", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K711" } ] }, { "name": "Ccdc33", "type": "synonym", "evidence": [ { "id": "XP_035300110", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300110" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: coiled-coil domain-containing protein 33", "type": "synonym", "evidence": [ { "id": "XP_035300110", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300110" }, { "id": "A0A9J7K711", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K711/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases frameshifts :: corrected 2 indels internal stop codons :: corrected 2 genomic stop codons ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035300110", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300110" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K711", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K711" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ccdc33", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K711", "locus": {} } ], "crossref": [ { "id": "100756733", "url": "https://www.ncbi.nlm.nih.gov/gene/100756733", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039889", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039889", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100756733", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756733", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K711", "url": "https://www.orthodb.org/?gene=A0A9J7K711", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21623", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21623", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21623:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21623:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00168", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00168", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26735", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26735", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035300110", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300110", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K711", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K711", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K711-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K711-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAFRGPDLHLPASLMSQRLKAEEMTLDLEFEVLSVGFNEEGRYALRLSAENPLQAGSEAGVQLQVNDGEPLPVCSAVTEVIEQQNPGQSLTFTRNKFIFTLPKGFCKNDGQNDAHLHIEALRLDGPSGQAAQRVGEAMFPIYPRPDEPRMNLTAQEHEDLYRYCGNLALLRASEDPTARHCGGLTYSVAFHVHRASGSSVSNCLVEPSQPELMSEXQGLSVSPSSSNSDQEGLSWXTGPWQHQAQVPGVNPPWDTYPYPDDSYLAPYNKETVVVTLHGATNLPARKDGSDPQPCVVVKTTSEEATGQSTKAVTFVTPEPTRSPVWGHTVKVEIQAEDAGREDVIIKVMDNNKKKELVSYEIPIKYLRVFHPYHFEFQKVFLHGVNEPLINSPKPMVVIARVVPSYAAFKASQARQDPAFVGLPLTKISFPISSPMNFDVPRVSQNGYPQLSRPGGPPEQPLWNQSFLFQGRDGATSFSGDAALVLEYYPSASMKSSEPWTLKKPLGVSVLPLKSRLYHKMLTGKGLKGLCVERLPIIRPENFLTPNNTKALPILNPKILDENLGAIRESWSMSSSGSSLEAEEPQTLNDTVMNNYQRAMQKMAEDILALRRQANILEEENRTLRSHLTQQSIEEEQSRAEEENLAVSMKHRLLLSELDIKKLRDRVQHLQNELIRKNDREKELLLLYQALQPQAAQVKRYQDKLQKMKALEDTVRHQEKVIEKMEQLLEERLRERKEPAPSNRLLEKPIVGWPAPQASGIHLDPTGENVTMDLYSMLLAENTRLRAELEKNRQQSAPIILQQQALPVDPRELGAGGDLAERLRDTNGPGHSKCTETLPAQVGXPGGYSTAQSASSVPTVHKPKVNIWRYGGXMTQDLLGSTSDKFTLLAKLEQAQSRILSLENQLEDSARHWAKEKQNLAIRLQEQQHGFGQPSKSIINQSHAGVTKDPQQSSKLEPALTSSDTKLCKPKPSNSYIETSNLQKT", "length": 984, "header": "tr|A0A9J7K711-1|A0A9J7K711_CRIGR Isoform 1 of LOW QUALITY PROTEIN: coiled-coil domain-containing protein 33 OS=Cricetulus griseus OX=10029 GN=Ccdc33 PE=4 SV=1 CANONICAL=A0A9J7K711-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K711-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K711/entry", "sequence": { "sequence": "MAFRGPDLHLPASLMSQRLKAEEMTLDLEFEVLSVGFNEEGRYALRLSAENPLQAGSEAGVQLQVNDGEPLPVCSAVTEVIEQQNPGQSLTFTRNKFIFTLPKGFCKNDGQNDAHLHIEALRLDGPSGQAAQRVGEAMFPIYPRPDEPRMNLTAQEHEDLYRYCGNLALLRASEDPTARHCGGLTYSVAFHVHRASGSSVSNCLVEPSQPELMSEXQGLSVSPSSSNSDQEGLSWXTGPWQHQAQVPGVNPPWDTYPYPDDSYLAPYNKETVVVTLHGATNLPARKDGSDPQPCVVVKTTSEEATGQSTKAVTFVTPEPTRSPVWGHTVKVEIQAEDAGREDVIIKVMDNNKKKELVSYEIPIKYLRVFHPYHFEFQKVFLHGVNEPLINSPKPMVVIARVVPSYAAFKASQARQDPAFVGLPLTKISFPISSPMNFDVPRVSQNGYPQLSRPGGPPEQPLWNQSFLFQGRDGATSFSGDAALVLEYYPSASMKSSEPWTLKKPLGVSVLPLKSRLYHKMLTGKGLKGLCVERLPIIRPENFLTPNNTKALPILNPKILDENLGAIRESWSMSSSGSSLEAEEPQTLNDTVMNNYQRAMQKMAEDILALRRQANILEEENRTLRSHLTQQSIEEEQSRAEEENLAVSMKHRLLLSELDIKKLRDRVQHLQNELIRKNDREKELLLLYQALQPQAAQVKRYQDKLQKMKALEDTVRHQEKVIEKMEQLLEERLRERKEPAPSNRLLEKPIVGWPAPQASGIHLDPTGENVTMDLYSMLLAENTRLRAELEKNRQQSAPIILQQQALPVDPRELGAGGDLAERLRDTNGPGHSKCTETLPAQVGXPGGYSTAQSASSVPTVHKPKVNIWRYGGXMTQDLLGSTSDKFTLLAKLEQAQSRILSLENQLEDSARHWAKEKQNLAIRLQEQQHGFGQPSKSIINQSHAGVTKDPQQSSKLEPALTSSDTKLCKPKPSNSYIETSNLQKT", "length": 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"MAEGNAVSDPQHAARLLRALSSFREEARFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSNTEEFLELSPQKLKEVISLEKLNVGNERYVFEAVIRWIAHDTEMRKVHMKDVMSALWVSGLDSSYLREQMLNEPLVREIVKECSNIPLSQPQQGEAMLASFKPRGYSECIVTIGGEERVSRKPTAAMRCMCPLYDPNRQLWIELAPLSMPRINHGVLSAEGFLFVLGGQDENKQTLSSGEKYDPDANTWTPLPPMNEARHNFGIVEIDGMLYILGGEDGDRELISMECYDIYSKTWTKQPDLTMVRKIGCYAAMKKKIYAMGGGSYGKLFESVECYDPRTQQWTAICPLKERRFGAVACGVAMELYVFGGVRSREDIQGSEMVTCKSEFYHDEFKRWIYLNDQNLCIPASSSFVYGAVPIGASIYVIGDLDTGTNYDYVREFKRSTGTWHHTKPLLPSDLRRTGCAALRIANCKLFRLQLQQGLFRIRVHSP", "length": 597, "header": "tr|A0A8C2LRT7-1|A0A8C2LRT7_CRIGR Computationally mapped isoform of Gigaxonin OS=Cricetulus griseus OX=10029 GN=Gan PE=4 SV=1 CANONICAL=A0A9J7K749-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K749-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K749/entry", "sequence": { "sequence": "MAQARCWASSSDCRAATLSRVGRTRGVDGRDARGIREGGRAGGGAGGGRDGRGQRCVRPSARRAPAAGAQLVPGGGALLRRAPGPRRRGDPGAEEHPGGGQPVHQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSNTEEFLELSPQKLKEVISLEKLNVGNERYVFEAVIRWIAHDTEMRKVHMKDVMSALWVSGLDSSYLREQMLNEPLVREIVKECSNIPLSQPQQGEAMLASFKPRGYSECIVTIGGEERVSRKPTAAMRCMCPLYDPNRQLWIELAPLSMPRINHGVLSAEGFLFVLGGQDENKQTLSSGEKYDPDANTWTPLPPMNEARHNFGIVEIDGMLYILGGEDGDRELISMECYDIYSKTWTKQPDLTMVRKIGCYAAMKKKIYAMGGGSYGKLFESVECYDPRTQQWTAICPLKERRFGAVACGVAMELYVFGGVRSREDIQGSEMVTCKSEFYHDEFKRWIYLNDQNLCIPASSSFVYGAVPIGASIYVIGDLDTGTNYDYVREFKRSTGTWHHTKPLLPSDLRRTGCAALRIANCKLFRLQLQQGLFRIRVHSP", "length": 608, "header": "tr|A0A9J7K749-1|A0A9J7K749_CRIGR Isoform 1 of Gigaxonin isoform X2 OS=Cricetulus griseus OX=10029 GN=Gan PE=4 SV=1 CANONICAL=A0A9J7K749-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K749", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K749" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100760056", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760056", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "cytoskeleton organization", "id": "GO:0007010", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007010", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K749", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K749" } ], "pmid": "" }, { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K749", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K749" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K749", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K749" } ], "pmid": "" }, { "name": "microtubule cytoskeleton", "id": "GO:0015630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015630", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K749", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K749" } ], "pmid": "" }, { "name": "Cul3-RING ubiquitin ligase complex", "id": "GO:0031463", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031463", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K749", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K749" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035301068", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301068" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K7V4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7V4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC118238844", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7V4", "locus": {} } ], "crossref": [ { "id": "A0A9J7K7V4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K7V4", "database": "AlphaFoldDB", "categories": [] }, { "id": "118238844", "url": "https://www.ncbi.nlm.nih.gov/gene/118238844", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001584", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001584", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012337", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012337", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036397", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036397", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039464", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039464", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:118238844", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118238844", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K7V4", "url": "https://www.orthodb.org/?gene=A0A9J7K7V4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR41694", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR41694", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR41694:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR41694:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00665", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00665", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16721", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16721", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035301068", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301068", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K7V4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7V4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K7V4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7V4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTHLSSKKMWELLEREEEFNFLLGKNDILKQVTEQCDACARVNASRLKLPPGNRVRGYRPGTHWEIDFTEIKPGKYGYKYLLIFVDTFSGWVEAFPTKHETAKIVTKKLLEEIFPRYGMPQVLGTDNGPAFVSQLIYRPSN", "length": 141, "header": "tr|A0A9J7K7V4-1|A0A9J7K7V4_CRIGR Isoform 1 of Protein NYNRIN-like OS=Cricetulus griseus OX=10029 GN=LOC118238844 PE=4 SV=1 CANONICAL=A0A9J7K7V4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K7V4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7V4/entry", "sequence": { "sequence": "MTHLSSKKMWELLEREEEFNFLLGKNDILKQVTEQCDACARVNASRLKLPPGNRVRGYRPGTHWEIDFTEIKPGKYGYKYLLIFVDTFSGWVEAFPTKHETAKIVTKKLLEEIFPRYGMPQVLGTDNGPAFVSQLIYRPSN", "length": 141, "header": "tr|A0A9J7K7V4-1|A0A9J7K7V4_CRIGR Isoform 1 of Protein NYNRIN-like OS=Cricetulus griseus OX=10029 GN=LOC118238844 PE=4 SV=1 CANONICAL=A0A9J7K7V4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K7V4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7V4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:118238844", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118238844", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K7V4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7V4" } ], "pmid": "" }, { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K7V4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7V4" } ], "pmid": "" }, { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K7V4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7V4" } ], "pmid": "" }, { "name": "endonuclease activity", "id": "GO:0004519", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004519", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K7V4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7V4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "DNA integration", "id": "GO:0015074", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015074", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K7V4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7V4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 43, "end_pos": 45, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7K7V4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7V4" }, { "id": "PS50994", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50994" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Integrase catalytic", "eco_id": "ECO_0000259", "start_pos": 56, "end_pos": 141, "start_aa": "Arg", "end_aa": "Asn", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 43, "end_pos": 45 } ] }, "class_list": [], "section_stats": [ { "table_id": 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"sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7KE44-1", "uniprot_ac": "A0A9J7KE44", "uniprot_id": "A0A9J7KE44_CRIGR", "mass": { "chemical_mass": 72814.0, "monoisotopic_mass": 72814.0 }, "refseq": { "ac": "XP_035306879", "name": "uncharacterized aarF domain-containing protein kinase 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306879" }, "gene_names": [ { "name": "Adck2", "type": "recommended", "evidence": [ { "id": "A0A9J7KE44", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE44" } ] }, { "name": "Adck2", "type": "synonym", "evidence": [ { "id": "XP_035306879", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306879" } ] } ], "protein_names": [ { "name": "Uncharacterized aarF domain-containing protein kinase 2 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7KE44", "database": "UniProtKB", "url": 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035306879", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306879" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KE44", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE44" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Adck2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE44", "locus": {} } ], "crossref": [ { "id": "A0A9J7KE44", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KE44", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd13971", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13971", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100771195", "url": "https://www.ncbi.nlm.nih.gov/gene/100771195", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004147", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004147", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011009", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011009", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044095", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044095", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052402", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052402", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100771195", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771195", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KE44", "url": "https://www.orthodb.org/?gene=A0A9J7KE44", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3HGJ9", "url": "https://www.orthodb.org/?gene=G3HGJ9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45890", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45890", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45890:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45890:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03109", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03109", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27536", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27536", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035306879", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306879", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KCZ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCZ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KCZ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCZ7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KE44", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE44", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KE44-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE44-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HGJ9", "url": "https://www.uniprot.org/uniprotkb/G3HGJ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HGJ9-1", "url": "https://www.uniprot.org/uniprotkb/G3HGJ9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVTRWRLSVRVCLSHLRCFELGKEQGLSRPLRGARHARLCWLLLGTLPKFISAHGDAAEGTPGGGSLRKTRWRDLAENGRVEVAQAGPLGRVLLCLRLGLRAGVLLAKFFPLLFLYPLTYLAPGLSTLWLHLLLKATETSGPTYIKLGQWASTRRDLFSEAFCAQFSKLHVQVTPHPWAHTECLLRQAFGEDWGSLLFFDTQQPVGSGCVAQVYKAFASTTLLEKDRVWRLGRPCAPQLFSGTRAVGMQREPFAEWQPLENLADEAFLEKLLLPKADLVRSEVDTCQVPGYPPKSDHLIPVAVKVLHPGLLTQVYMDLLLMKIGSQALGLLPGVKWLSLPEIVKEFEKLMIQQTDLRYEARNLEHFQHNFENMASVKFPTPLHPLITRDILVETYEESVPVSSYQQAGIPEDLKRKIAQLGINMLLKMIFVDNFVHGDLHPGNILVQGADGLSPSLEIQQQQVDVSDTLVATIAPALCPLRLVLLDAGIVAELQASDLRNFQAVFLAVALGQGHKVAELILHHARANECKDVERFKEEMATLVTQARKNTLTLEKCANTSERKQRGVEKWERTGPSRGRNASGILLGSFVFQLHVSSLLSSVFKLLMTHKVKLESNFASIVFAIMVLEGLGRSLDPKLDVLEAAKPFLLKGGGLL", "length": 655, "header": "tr|A0A9J7KE44-1|A0A9J7KE44_CRIGR Isoform 1 of Uncharacterized aarF domain-containing protein kinase 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Adck2 PE=3 SV=1 CANONICAL=A0A9J7KE44-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KCZ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCZ7/entry", "sequence": { "sequence": "MVTRWRLSVRVCLSHLRCFELGKEQGLSRPLRGARHARLCWLLLGTLPKFISAHGDAAEGTPGGGSLRKTRWRDLAENGRVEVAQAGPLGRVLLCLRLGLRAGVLLAKFFPLLFLYPLTYLAPGLSTLWLHLLLKATETSGPTYIKLGQWASTRRDLFSEAFCAQFSKLHVQVTPHPWAHTECLLRQAFGEDWGSLLFFDTQQPVGSGCVAQVYKAFASTTLLEKDRVWRLGRPCAPQLFSGTRAVGMQREPFAEWQPLENLADEAFLEKLLLPKADLVRSEVDTCQVPGYPPKSDHLIPVAVKVLHPGLLTQVYMDLLLMKIGSQALGLLPGVKWLSLPEIVKEFEKLMIQQTDLRYEARNLEHFQHNFENMASVKFPTPLHPLITRDILVETYEESVPVSSYQQAGIPEDLKRKIAQLGINMLLKMGHKVAELILHHARANECKDVERFKEEMATLVTQARKNTLTLEKCANTSERKQRGVEKWERTGPSRGRNASGILLGSFVFQLHVSSLLSSVFKLLMTHKVKLESNFASIVFAIMVLEGLGRSLDPKLDVLEAAKPFLLKGGGLL", "length": 571, "header": "tr|A0A9J7KCZ7-1|A0A9J7KCZ7_CRIGR Computationally mapped isoform of Uncharacterized aarF domain-containing protein kinase 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Adck2 PE=4 SV=1 CANONICAL=A0A9J7KE44-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KE44-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE44/entry", "sequence": { "sequence": "MVTRWRLSVRVCLSHLRCFELGKEQGLSRPLRGARHARLCWLLLGTLPKFISAHGDAAEGTPGGGSLRKTRWRDLAENGRVEVAQAGPLGRVLLCLRLGLRAGVLLAKFFPLLFLYPLTYLAPGLSTLWLHLLLKATETSGPTYIKLGQWASTRRDLFSEAFCAQFSKLHVQVTPHPWAHTECLLRQAFGEDWGSLLFFDTQQPVGSGCVAQVYKAFASTTLLEKDRVWRLGRPCAPQLFSGTRAVGMQREPFAEWQPLENLADEAFLEKLLLPKADLVRSEVDTCQVPGYPPKSDHLIPVAVKVLHPGLLTQVYMDLLLMKIGSQALGLLPGVKWLSLPEIVKEFEKLMIQQTDLRYEARNLEHFQHNFENMASVKFPTPLHPLITRDILVETYEESVPVSSYQQAGIPEDLKRKIAQLGINMLLKMIFVDNFVHGDLHPGNILVQGADGLSPSLEIQQQQVDVSDTLVATIAPALCPLRLVLLDAGIVAELQASDLRNFQAVFLAVALGQGHKVAELILHHARANECKDVERFKEEMATLVTQARKNTLTLEKCANTSERKQRGVEKWERTGPSRGRNASGILLGSFVFQLHVSSLLSSVFKLLMTHKVKLESNFASIVFAIMVLEGLGRSLDPKLDVLEAAKPFLLKGGGLL", "length": 655, "header": "tr|A0A9J7KE44-1|A0A9J7KE44_CRIGR Isoform 1 of Uncharacterized aarF domain-containing protein kinase 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Adck2 PE=3 SV=1 CANONICAL=A0A9J7KE44-1" }, "locus": {} }, { "isoform_ac": "G3HGJ9-1", "url": "https://www.uniprot.org/uniprotkb/G3HGJ9/entry", "sequence": { "sequence": "MVTRWRLSVRVCLSHLRCFELGKEQGLSRPLRGARHARLCWLLLGTLPKFISAHGDAAEGTPGGGSLRKTRWRDLAENGRVEVAQAGPLGRVLLCLRLGLRAGVLLAKFFPLLFLYPLTYLAPGLSTLWLHLLLKATETSGPTYIKLGQWASTRRDLFSEAFCAQFSKLHVQVTPHPWAHTECLLRQAFGEDWGSLLFFDTQQPVGSGCVAQVYKAFASTTLLEKDRVWRLGRPCAPQLFSGTRAVGMQREPFAEWQPLENLADEAFLEKLLLPKADLVRSEVDTCQVPGYPPKSDHLIPVAVKVLHPGLLTQVYMDLLLMKIGSQALGLLPGVKWLSLPEIVKEFEKLMIQQTDLRYEARNLEHFQHNFENMASVKFPTPLHPLITRDILVETYEESVPVSSYQQAGIPEDLKRKIAQLGINMLLKMIFVDNFVHGDLHPGNILVQGADGLSPSLEIQQQQVDVSDTLVATIAPALCPLRLVLLDAGIVAELQASDLRNFQAVFLAVALGQGHKVAELILHHARANECKDVERFKEEMATLVTQARKNTLTLEKLHVSSLLSSVFKLLMTHKVKLESNFASIVFAIMVLEGLGRSLDPKLDVLEAAKPFLLKGGGLL", "length": 618, "header": "tr|G3HGJ9-1|A0A9J7KE44_CRIGR Computationally mapped isoform of Uncharacterized aarF domain-containing protein kinase 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Adck2 PE=3 SV=1 CANONICAL=A0A9J7KE44-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 61, "start_aa": "Thr", "end_pos": 61, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr61", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HGJ9", "url": "https://www.uniprot.org/uniprotkb/G3HGJ9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HGJ9", "url": "https://www.uniprot.org/uniprotkb/G3HGJ9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100771195", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771195", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KE44", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE44" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "kinase activity", "id": "GO:0016301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016301", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KE44", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE44" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of ubiquinone biosynthetic process", "id": "GO:0010795", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010795", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KE44", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE44" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 558, "end_pos": 560, "annotation": "n_glycosylation_sequon" }, { "start_pos": 580, "end_pos": 582, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7KE44", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE44" }, { "id": "PF03109", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03109" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "ABC1 atypical kinase-like", "eco_id": "ECO_0000259", "start_pos": 301, "end_pos": 519, "start_aa": "Val", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 61 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 558, "end_pos": 560 }, { "start_pos": 580, "end_pos": 582 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7K9C1-1", "uniprot_ac": "A0A9J7K9C1", "uniprot_id": "A0A9J7K9C1_CRIGR", "mass": { "chemical_mass": 56278.0, "monoisotopic_mass": 56278.0 }, "refseq": { "ac": "XP_035300997", "name": "ETS translocation variant 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300997" }, "gene_names": [ { "name": "Etv1", "type": "recommended", "evidence": [ { "id": "A0A9J7K9C1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9C1" } ] }, { "name": "Etv1", "type": "synonym", "evidence": [ { "id": "XP_035300997", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300997" } ] } ], "protein_names": [ { "name": "ETS translocation variant 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_035300997", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300997" }, { "id": "A0A9J7K9C1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9C1/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035300997", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300997" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K9C1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9C1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Etv1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9C1", "locus": {} } ], "crossref": [ { "id": "A0A9J7K9C1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K9C1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100758498", "url": "https://www.ncbi.nlm.nih.gov/gene/100758498", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000418", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000418", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006715", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006715", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036388", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036388", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036390", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036390", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046328", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046328", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100758498", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758498", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DYQAESX", "url": "https://omabrowser.org/oma/group/DYQAESX/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7K9C1", "url": "https://www.orthodb.org/?gene=A0A9J7K9C1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3I1D7", "url": "https://www.orthodb.org/?gene=G3I1D7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11849", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11849", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11849:SF196", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11849:SF196", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00178", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00178", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF04621", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04621", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035300997", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300997", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K9C1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9C1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K9C1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9C1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3I1D7", "url": "https://www.uniprot.org/uniprotkb/G3I1D7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3I1D7-1", "url": "https://www.uniprot.org/uniprotkb/G3I1D7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSGRGDEGQLQLPSKFVAGFVCHTEKNQSQRGRNCNEKPTNVRKRKVINRDLAHDSEELFQDLSQLQETWLAEAQVPDNDEQFVPDYQAESLAFHGLPLKIKKEPHSPCSELGSACSQEQPFKFSYGEKCLYSVSAYDQKPHVGMRPSNPPTPSSTPVSPLHHASPNTTHTPKPDRPFPAHLPPSQSIPDSNYPMDHRFRRQLSEPCNSFPPLPTLPREGRPVYQRQMSEPNIPFPPQGFKQEYHDPVYEHNTMVGGAASQSFPPPLMIKQEPRDFAYDSEVPSCHSIYMRQEGFLAHPSRTEGCMFEKGPRQFYDDTCVVPEKFDGDIKQEPGMYREGPTYQRRGSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCDPEALFSMAFPDNQRPLLKTDMERHINEEDTVPLSHFDESMAYMPEGGCCNPHPYNEGYVY", "length": 490, "header": "tr|A0A9J7K9C1-1|A0A9J7K9C1_CRIGR Isoform 1 of ETS translocation variant 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Etv1 PE=3 SV=1 CANONICAL=A0A9J7K9C1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K9C1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9C1/entry", "sequence": { "sequence": "MSGRGDEGQLQLPSKFVAGFVCHTEKNQSQRGRNCNEKPTNVRKRKVINRDLAHDSEELFQDLSQLQETWLAEAQVPDNDEQFVPDYQAESLAFHGLPLKIKKEPHSPCSELGSACSQEQPFKFSYGEKCLYSVSAYDQKPHVGMRPSNPPTPSSTPVSPLHHASPNTTHTPKPDRPFPAHLPPSQSIPDSNYPMDHRFRRQLSEPCNSFPPLPTLPREGRPVYQRQMSEPNIPFPPQGFKQEYHDPVYEHNTMVGGAASQSFPPPLMIKQEPRDFAYDSEVPSCHSIYMRQEGFLAHPSRTEGCMFEKGPRQFYDDTCVVPEKFDGDIKQEPGMYREGPTYQRRGSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCDPEALFSMAFPDNQRPLLKTDMERHINEEDTVPLSHFDESMAYMPEGGCCNPHPYNEGYVY", "length": 490, "header": "tr|A0A9J7K9C1-1|A0A9J7K9C1_CRIGR Isoform 1 of ETS translocation variant 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Etv1 PE=3 SV=1 CANONICAL=A0A9J7K9C1-1" }, "locus": {} }, { "isoform_ac": "G3I1D7-1", "url": "https://www.uniprot.org/uniprotkb/G3I1D7/entry", "sequence": { "sequence": "MDGFYDQQVPYVVTNSQRGRNCNEKPTNVRKRKVINRDLAHDSEELFQDLSQLQETWLAEAQVPDNDEQFVPDYQAESLAFHGLPLKIKKEPHSPCSELGSACSQEQPFKFSYGEKCLYSVSAYDQKPHVGMRPSNPPTPSSTPVSPLHHASPNTTHTPKPDRPFPAHLPPSQSIPDSNYPMDHRFRRQLSEPCNSFPPLPTLPREGRPVYQRQMSEPNIPFPPQGFKQEYHDPVYEHNTMVGGAASQSFPPPLMIKQEPRDFAYDSEVPSCHSIYMRQEGFLAHPSRTEGCMFEKGPRQFYDDTCVVPEKFDGDIKQEPGMYREGPTYQRRGSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCDPEALFSMAFPDNQRPLLKTDMERHINEEDTVPLSHFDESMAYMPEGGCCNPHPYNEGYVY", "length": 477, "header": "tr|G3I1D7-1|A0A9J7K9C1_CRIGR Computationally mapped isoform of ETS translocation variant 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Etv1 PE=3 SV=1 CANONICAL=A0A9J7K9C1-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 152, "start_aa": "Thr", "end_pos": 152, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr152", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035300763", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300763" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K953", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K953" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cdkl1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K953", "locus": {} } ], "crossref": [ { "id": "A0A9J7K953", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K953", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd07847", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07847", "database": "CDD", "categories": [ "Protein Classification" ] }, 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"https://www.uniprot.org/uniprotkb/A0A9J7GZ45", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GZ45-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZ45-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H0R6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0R6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H0R6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0R6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K953", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K953", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K953-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K953-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3I9C0", "url": "https://www.uniprot.org/uniprotkb/G3I9C0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3I9C0-1", "url": "https://www.uniprot.org/uniprotkb/G3I9C0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDIEEGGGLRCQIHRLVHHPFQGYHSGPQNSPNEKSSGCPSVHCLLGLPAAPSLTITSLSMQLKHPNLVNLLEVFRRKRRLHLVFEYCDHTVLHELDRYQRGVPEHLMKSIIWQTLQAVNFCHKHNKLSLNKKALGSFSRVPLGSFALLKNAARSQAMRHTQGGQEPPAAEHWPRCGTELTSSDSPQRCIHRDVKPENILITKHSVIKLCDFGFARLLTGPGDYYTDYVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSMNQYFSGVKIPDPEDMETLESKFPNISYPALGFLKGCLHMDPAERLTCEQLLQHPYFDSIREVGDLTRQHDKSVRKTLRQSRKHLTGLQYLPQLTSSSILPALDNKKYHCSTKKLNYHFPNI", "length": 419, "header": "tr|A0A9J7K953-1|A0A9J7K953_CRIGR Isoform 1 of Cyclin-dependent kinase-like 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Cdkl1 PE=4 SV=1 CANONICAL=A0A9J7K953-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G213-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G213/entry", "sequence": { "sequence": "MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKRFLETEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFEYCDHTVLHELDRYQRGVPEHLMKSIIWQTLQAVNFCHKHNKLSLNKKALGSFSRVPLGSFALLKNAARSQAMRHTQGGQEPPAAEHWPRCGTELTSSDSPQRCIHRDVKPENILITKHSVIKLCDFGFARLLTGPGDYYTDYVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSMNQYFSGVKIPDPEDMETLESKFPNISYPALGFLKGCLHMDPAERLTCEQLLQHPYFDSIREVGDLTRQHDKSVRKTLRQSRKHLTGLQYLPQLTSSSILPALDNKKYHCSTKKLNYHFPNI", "length": 414, "header": "tr|A0A9J7G213-1|A0A9J7K953_CRIGR Computationally mapped isoform of Cyclin-dependent kinase-like 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Cdkl1 PE=4 SV=1 CANONICAL=A0A9J7K953-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GZ45-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZ45/entry", "sequence": { "sequence": "MKSIIWQTLQAVNFCHKHNKLSLNKKALGSFSRVPLGSFALLKNAARSQAMRHTQGGQEPPAAEHWPRCGTELTSSDSPQRCIHRDVKPENILITKHSVIKLCDFGFARLLTGPGDYYTDYVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSMNQYFSGVKIPDPEDMETLESKFPNISYPALGFLKGCLHMDPAERLTCEQLLQHPYFDSIREVGDLTRQHDKSVRKTLRQSRKHLTGLQYLPQLTSSSILPALDNKKYHCSTKKLNYHFPNI", "length": 312, "header": "tr|A0A9J7GZ45-1|A0A9J7GZ45_CRIGR Computationally mapped isoform of Cyclin-dependent kinase-like 1 isoform X5 OS=Cricetulus griseus OX=10029 GN=Cdkl1 PE=4 SV=1 CANONICAL=A0A9J7K953-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H0R6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0R6/entry", "sequence": { "sequence": "MDIEEGGGLRCQIHRLVHHPFQGYHSGPQNSPNEKSSGCPSVHCLLGLPAAPSLTITSLSMQLKHPNLVNLLEVFRRKRRLHLVFEYCDHTVLHELDRYQRGVPEHLMKSIIWQTLQAVNFCHKHNCIHRDVKPENILITKHSVIKLCDFGFARLLTGPGDYYTDYVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSMNQYFSGVKIPDPEDMETLESKFPNISYPALGFLKGCLHMDPAERLTCEQLLQHPYFDSIREVGDLTRQHDKSVRKTLRQSRKHLTGLQYLPQLTSSSILPALDNKKYHCSTKKLNYHFPNI", "length": 357, "header": "tr|A0A9J7H0R6-1|A0A9J7H0R6_CRIGR Computationally mapped isoform of Cyclin-dependent kinase-like 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Cdkl1 PE=3 SV=1 CANONICAL=A0A9J7K953-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K953-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K953/entry", "sequence": { "sequence": "MDIEEGGGLRCQIHRLVHHPFQGYHSGPQNSPNEKSSGCPSVHCLLGLPAAPSLTITSLSMQLKHPNLVNLLEVFRRKRRLHLVFEYCDHTVLHELDRYQRGVPEHLMKSIIWQTLQAVNFCHKHNKLSLNKKALGSFSRVPLGSFALLKNAARSQAMRHTQGGQEPPAAEHWPRCGTELTSSDSPQRCIHRDVKPENILITKHSVIKLCDFGFARLLTGPGDYYTDYVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSMNQYFSGVKIPDPEDMETLESKFPNISYPALGFLKGCLHMDPAERLTCEQLLQHPYFDSIREVGDLTRQHDKSVRKTLRQSRKHLTGLQYLPQLTSSSILPALDNKKYHCSTKKLNYHFPNI", "length": 419, "header": "tr|A0A9J7K953-1|A0A9J7K953_CRIGR Isoform 1 of Cyclin-dependent kinase-like 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Cdkl1 PE=4 SV=1 CANONICAL=A0A9J7K953-1" }, "locus": {} }, { "isoform_ac": "G3I9C0-1", "url": "https://www.uniprot.org/uniprotkb/G3I9C0/entry", "sequence": { "sequence": "MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKRFLETEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFEYCDHTVLHELDRYQRGVPEHLMKSIIWQTLQAVNFCHKHNCIHRDVKPENILITKHSVIKLCDFGFARLLTGPGDYYTDYVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSMNQYFSGVKIPDPEDMETLESKFPNISYPALGFLKGCLHMDPAERLTCEQLLQHPYFDSIREVGDLTRQHDKSVRKTLRQSRKHLTGLQYLPQLTSSSILPALDNKKYHCSTKKLNYHFPNI", "length": 352, "header": "tr|G3I9C0-1|A0A9J7K953_CRIGR Computationally mapped isoform of Cyclin-dependent kinase-like 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Cdkl1 PE=4 SV=1 CANONICAL=A0A9J7K953-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [ "enzyme" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3I9C0", "url": "https://www.uniprot.org/uniprotkb/G3I9C0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3I9C0", "url": "https://www.uniprot.org/uniprotkb/G3I9C0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100767891", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767891", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A286ZXQ3-1", "protein_name": "cyclin-dependent kinase", "gene_name": "CDKL1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKRFLESEDDPVIKKIALREIRMLKRLKHPNLVNLIEVFRRKKKLHLVFEYCDHTVLHELDRHQRGVPEHLVKSITWQTLQAINFCHKHNCIHRDVKPENILITKHSVIKLCDFGFARLLTGPSDYYTDYVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGMPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSMNQYFSGVEIPDPEDMEPLELKFPNISYPALGLLKGCLHMNPVERLTCEQLLQHPYFDSIRESGDLAKEHEKPTRKTLRQSRKHLPGLQYLPQLTSSSILPALDNKKYYCNTKKLNYRFPNI", "length": 352 }, "evidence": [ { "id": "A0A9J7K953", "url": "https://omabrowser.org/oma/group/A0A9J7K953/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8V0ZA06-1", "protein_name": "cyclin-dependent kinase", "gene_name": "CDKL1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MERYEKLGKVGEGSYGVVFKCRNRETGQIVAIKKFLESEEDPVIRKIALREVRMLKQLKHPNLVNLLEVFRRKRKLHLVFEYCDHTVLHELDKHPRGVPEQLVRSITWQTLQAVNFCHKHNCIHRDVKPENILITKHSVIKLCDFGFARMLTGPGDYYTDYVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRRTLGDLIPRHQQVFSTNQFFSGVTIPDPESMEPLEMKFPSISYPALALMKGCLRMDPAERQTCEQLLQHPYFDSVREAGDVGKEHEKAARRPAKLTRKHVPGFQYLPQLSSSNVLPALDSKKYFCKTRKSNYHFPNI", "length": 352 }, "evidence": [ { "id": "A0A9J7K953", "url": "https://omabrowser.org/oma/group/A0A9J7K953/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "P43294-1", "protein_name": "Serine/threonine-protein kinase MHK", "gene_name": "MHK", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MMVFVVFVMCRYKILEELGDGTCGSVYKAVNLETYEVVAVKKMKRKFYYWEECVNLREVKALRKLNHPHIIKLKEIVREHNELFFIFECMDHNLYHIMKERERPFSEGEIRSFMSQMLQGLAHMHKNGYFHRDLKPENLLVTNNILKIADFGLAREVASMPPYTEYVSTRWYRAPEVLLQSSLYTPAVDMWAVGAILAELYALTPLFPGESEIDQLYKICCVLGKPDWTTFPEAKSISRIMSISHTEFPQTRIADLLPNAAPEAIDLINRLCSWDPLKRPTADEALNHPFFSMATQASYPIHDLELRLDNMAALPNLELNLWDFNREPEECFLGLTLAVKPSAPKLEMLRNVSQDMSENFLFCPGVNNDREPSVFWSLLSPDENGLHAPVESSPLSLSFSPMQQHTVGPPQSSGFTMTSSMQPNMLDRPWMAVSAPFQQSHYL", "length": 443 }, "evidence": [ { "id": "A0A9J7K953", "url": "https://omabrowser.org/oma/group/A0A9J7K953/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q00532-1", "protein_name": "Cyclin-dependent kinase-like 1", "gene_name": "CDKL1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFEYCDHTVLHELDRYQRGVPEHLVKSITWQTLQAVNFCHKHNCIHRDVKPENILITKHSVIKLCDFGFARLLTGPSDYYTDYVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSTNQYFSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTQRLTCEQLLHHPYFENIREIEDLAKEHNKPTRKTLRKSRKHHCFTETSKLQYLPQLTGSSILPALDNKKYYCDTKKLNYRFPNI", "length": 357 }, "evidence": [ { "id": "A0A9J7K953", "url": "https://omabrowser.org/oma/group/A0A9J7K953/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q66HE7-1", "protein_name": "Cyclin-dependent kinase-like 1", "gene_name": "Cdkl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKRFLETEDDPVIKKIALREIRMLKQLKHPNLVSLLEVFRRKRRLHLVFEYCHHTVLHELDRYQRGVPEPLVKNITWQTLQAVNFCHKHNCIHRDVKPENILITKHSVIKLCDFGFARLLTGPGDYYTDYVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSMNQYFSGVKIPDPEDMETLELKFPNISYSALGFLKGCLHMDPAERLTCEQLLQHPYFDSIRDVGELARPHDKPTRKTLRQSRKHLTGLQHLPQLTSSSVLPALDRKKYHCGTRNFNYHFPNI", "length": 352 }, "evidence": [ { "id": "A0A9J7K953", "url": "https://omabrowser.org/oma/group/A0A9J7K953/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8CEQ0-1", "protein_name": "Cyclin-dependent kinase-like 1", "gene_name": "Cdkl1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKRFLETEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFEYCDHTVLHELDRYQRGVPEPLVKNITWQTLQAVNFCHKHNCIHRDVKPENILITKQSAIKLCDFGFARLLTGPGDYYTDYVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSMNQYFSGVKIPDPEDMETLELKFPNISYSALGFLKGCLHMDPAERLTCEQLLQHPYFDSIREVGELTRQHDKPARKTLRQSRKHLTGLQYLPQLTSSRILPALDNKKYHCSTKRFNYHFPNI", "length": 352 }, "evidence": [ { "id": "A0A9J7K953", "url": "https://omabrowser.org/oma/group/A0A9J7K953/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VMN3-1", "protein_name": "Cyclin-dependent kinase-like 2", "gene_name": "Cdkl", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MFHSSSFYLPQSLQNSFLYRLIQKIQVCNEPDLVETRQYRPQGSSKMDRYEKLSRLGEGSYGVVYKCRDRETGALVAVKRFVESEDDPAIRKIALREIRLLKNLKHPNLVSLLEVFRRKRRLHLVFEFCELTVLHELERHPQGCPEHLTKQICYQTLLGVAYCHKQGCLHRDIKPENILLTAQGQVKLCDFGFARMLSPGENYTDYVATRWYRAPELLVGDTQYGTPVDVWAIGCLFAELVRGEALWPGRSDVDQLYLIRKTLGDLLPRHIQIFGQNEYFKGITLPVPPTLEPLEDKMPAKSQQNPLTIDFLKKCLDKDPTKRWSCEKLTKHSYFDDYIAKQRELEHVNSLEAANLRQQQLASQQFMLATAAQQLQTGPAQAAAIAAARDKSKTSNTSLPLLPSTQHHHHPHQDYVKLQPLNKNANLLHRTEHHLPTI", "length": 438 }, "evidence": [ { "id": "A0A9J7K953", "url": "https://omabrowser.org/oma/group/A0A9J7K953/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K953", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K953" } ], "pmid": "" }, { "name": "cyclin-dependent protein serine/threonine kinase activity", "id": "GO:0004693", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004693", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K953", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K953" } ], "pmid": "" }, { "name": "protein kinase activity", "id": "GO:0004672", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004672", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K953", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K953" } ], "pmid": "" }, { "name": "protein serine/threonine kinase activity", "id": "GO:0004674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004674", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K953", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K953" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K953", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K953" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K953", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K953" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K953", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K953" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 322, "end_pos": 324, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "17989", "name": "", "equation": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [ "G3GRI0-1", "G3GWJ3-1", "G3GYQ3-1", "A0A9J7GY39-1", 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"https://www.rhea-db.org/rhea/46608" } ] } ], "reaction_participants": [], "reaction_enzymes": [ { "uniprot_ac": "A0A061HUS7", "gene_name": "Srpk3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A061HUS7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061HUS7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A061HUS7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061HUS7" } ] } ] }, { "uniprot_ac": "A0A061HVM6", "gene_name": "Hipk4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A061HVM6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061HVM6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A061HVM6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061HVM6" } ] } ] }, { "uniprot_ac": "A0A061HZ27", "gene_name": "Pik3cg", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A061HZ27", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061HZ27" } ] }, { "ec_number": "2.7.1.153", "activity": "a 1,2-diacyl-sn-glycero-3-phospho-(1D-myo-inositol-4,5-bisphosphate) + ATP = a 1,2-diacyl-sn-glycero-3-phospho-(1D-myo-inositol-3,4,5-trisphosphate) + ADP + H(+).", "evidence": [ { "id": "A0A061HZ27", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061HZ27" } ] }, { "ec_number": "2.7.1.137", "activity": "a 1,2-diacyl-sn-glycero-3-phospho-(1D-myo-inositol) + ATP = a 1,2-diacyl-sn-glycero-3-phospho-(1D-myo-inositol-3-phosphate) + ADP + H(+).", "evidence": [ { "id": "A0A061HZ27", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061HZ27" } ] }, { 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"database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061IJA8" } ] }, { "ec_number": "2.7.10.2", "activity": "", "evidence": [ { "id": "A0A061IJA8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061IJA8" } ] } ] }, { "uniprot_ac": "A0A061IJW6", "gene_name": "Plk2", "activity": [ { "ec_number": "2.7.11.21", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A061IJW6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061IJW6" } ] }, { "ec_number": "2.7.11.21", "activity": "", "evidence": [ { "id": "A0A061IJW6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061IJW6" } ] } ] }, { "uniprot_ac": "A0A061ILI7", "gene_name": "Cdkl2", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A061ILI7", "database": "UniProtKB", "url": 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"ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A3L7GPC7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7GPC7" } ] } ] }, { "uniprot_ac": "A0A3L7HK04", "gene_name": "Csnk1g2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A3L7HK04", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HK04" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A3L7HK04", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HK04" } ] } ] }, { "uniprot_ac": "A0A3L7HKC4", "gene_name": "Cdkl4", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A3L7HKC4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HKC4" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "A0A3L7HKC4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HKC4" } ] } ] }, { "uniprot_ac": "A0A3L7HMX8", "gene_name": "Nek2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A3L7HMX8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HMX8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A3L7HMX8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HMX8" } ] } ] }, { "uniprot_ac": "A0A3L7HQF4", "gene_name": "Eif2ak1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A3L7HQF4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HQF4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A3L7HQF4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HQF4" } ] } ] }, { "uniprot_ac": "A0A3L7HRZ8", "gene_name": "Map3k13", "activity": [ { "ec_number": "2.7.11.25", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A3L7HRZ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HRZ8" } ] }, { "ec_number": "2.7.11.25", "activity": "", "evidence": [ { "id": "A0A3L7HRZ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HRZ8" } ] } ] }, { "uniprot_ac": "A0A3L7HV37", "gene_name": "Prpf4b", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A3L7HV37", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HV37" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A3L7HV37", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HV37" } ] } ] }, { "uniprot_ac": "A0A3L7I1E7", "gene_name": "Bckdk", "activity": [ { "ec_number": "2.7.11.-", "activity": "", "evidence": [ { "id": "A0A3L7I1E7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7I1E7" } ] } ] }, { "uniprot_ac": "A0A3L7I1R2", "gene_name": "Riok3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A3L7I1R2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7I1R2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A3L7I1R2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7I1R2" } ] } ] }, { "uniprot_ac": "A0A3L7I4E3", "gene_name": "Sbk1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A3L7I4E3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7I4E3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A3L7I4E3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7I4E3" } ] } ] }, { "uniprot_ac": "A0A3L7I5Y4", "gene_name": "Plk3", "activity": [ { "ec_number": "2.7.11.21", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A3L7I5Y4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7I5Y4" } ] }, { "ec_number": "2.7.11.21", "activity": "", "evidence": [ { "id": "A0A3L7I5Y4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7I5Y4" } ] } ] }, { "uniprot_ac": "A0A3L7I870", "gene_name": "Tssk3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A3L7I870", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7I870" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A3L7I870", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7I870" } ] } ] }, { "uniprot_ac": "A0A3L7IB60", "gene_name": "Pim3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A3L7IB60", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7IB60" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A3L7IB60", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7IB60" } ] } ] }, { "uniprot_ac": "A0A3L7IBX6", "gene_name": "Stk16", "activity": [ { "ec_number": "2.7.10.2", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A3L7IBX6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7IBX6" } ] }, { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A3L7IBX6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7IBX6" } ] }, { "ec_number": "2.7.10.2", "activity": "", "evidence": [ { "id": "A0A3L7IBX6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7IBX6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A3L7IBX6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7IBX6" } ] } ] }, { "uniprot_ac": "A0A3L7ID00", "gene_name": "Stk17b", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A3L7ID00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7ID00" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A3L7ID00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7ID00" } ] } ] }, { "uniprot_ac": "A0A3L7IEL5", "gene_name": "LOC113833388", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A3L7IEL5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7IEL5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A3L7IEL5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7IEL5" } ] } ] }, { "uniprot_ac": "A0A3L7IER1", "gene_name": "Stk38", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A3L7IER1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7IER1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A3L7IER1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7IER1" } ] } ] }, { "uniprot_ac": "A0A8C2L7R1", "gene_name": "Map3k14", "activity": [ { "ec_number": "2.7.11.25", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2L7R1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2L7R1" } ] }, { "ec_number": "2.7.11.25", "activity": "", "evidence": [ { "id": "A0A8C2L7R1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2L7R1" } ] } ] }, { "uniprot_ac": "A0A8C2LA64", "gene_name": "Prkca", "activity": [ { "ec_number": "2.7.11.13", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2LA64", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LA64" } ] }, { "ec_number": "2.7.11.13", "activity": "", "evidence": [ { "id": "A0A8C2LA64", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LA64" } ] } ] }, { "uniprot_ac": "A0A8C2LC89", "gene_name": "Map3k21", "activity": [ { "ec_number": "2.7.11.25", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2LC89", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LC89" } ] }, { "ec_number": "2.7.11.25", "activity": "", "evidence": [ { "id": "A0A8C2LC89", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LC89" } ] } ] }, { "uniprot_ac": "A0A8C2LCN7", "gene_name": "Csnk2a2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2LCN7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LCN7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A8C2LCN7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LCN7" } ] } ] }, { "uniprot_ac": "A0A8C2LDE5", "gene_name": "Prkci", "activity": [ { "ec_number": "2.7.11.13", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2LDE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LDE5" } ] }, { "ec_number": "2.7.11.13", "activity": "", "evidence": [ { "id": "A0A8C2LDE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LDE5" } ] } ] }, { "uniprot_ac": "A0A8C2LDQ8", "gene_name": "Vrk3", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2LDQ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LDQ8" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "A0A8C2LDQ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LDQ8" } ] } ] }, { "uniprot_ac": "A0A8C2LDU9", "gene_name": "Ern1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2LDU9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LDU9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A8C2LDU9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LDU9" } ] } ] }, { "uniprot_ac": "A0A8C2LE67", "gene_name": "Prkaa1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2LE67", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LE67" } ] }, { "ec_number": "2.7.11.26", "activity": "L-seryl-[tau protein] + ATP = O-phospho-L-seryl-[tau protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2LE67", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LE67" } ] }, { "ec_number": "2.7.11.31", "activity": "L-seryl-[acetyl-CoA carboxylase] + ATP = O-phospho-L-seryl-[acetyl-CoA carboxylase] + ADP + H(+).", "evidence": [ { "id": "A0A8C2LE67", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LE67" } ] }, { "ec_number": "2.7.11.26", "activity": "", "evidence": [ { "id": "A0A8C2LE67", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LE67" } ] }, { "ec_number": "2.7.11.31", "activity": "", "evidence": [ { "id": "A0A8C2LE67", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LE67" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A8C2LE67", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LE67" } ] } ] }, { "uniprot_ac": "A0A8C2LEI8", "gene_name": "Mos", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2LEI8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LEI8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A8C2LEI8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LEI8" } ] } ] }, { "uniprot_ac": "A0A8C2LFT9", "gene_name": "Eif2ak4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2LFT9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LFT9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A8C2LFT9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LFT9" } ] } ] }, { "uniprot_ac": "A0A8C2LH99", "gene_name": "Pdpk1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2LH99", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LH99" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A8C2LH99", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LH99" } ] } ] }, { "uniprot_ac": "A0A8C2LHE9", "gene_name": "Camk1d", "activity": [ { "ec_number": "2.7.11.17", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2LHE9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LHE9" } ] }, { "ec_number": "2.7.11.17", "activity": "", "evidence": [ { "id": "A0A8C2LHE9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LHE9" } ] } ] }, { "uniprot_ac": "A0A8C2LI14", "gene_name": "Mapk12", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2LI14", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LI14" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "A0A8C2LI14", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LI14" } ] } ] }, { "uniprot_ac": "A0A8C2LI15", "gene_name": "Stk25", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2LI15", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LI15" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A8C2LI15", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LI15" } ] } ] }, { "uniprot_ac": "A0A8C2LII0", "gene_name": "Cdk6", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2LII0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LII0" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "A0A8C2LII0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LII0" } ] } ] }, { "uniprot_ac": "A0A8C2LK72", "gene_name": "Rps6ka4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2LK72", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LK72" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A8C2LK72", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LK72" } ] } ] }, { "uniprot_ac": "A0A8C2LMC9", "gene_name": "Mknk2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2LMC9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LMC9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A8C2LMC9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LMC9" } ] } ] }, { "uniprot_ac": "A0A8C2LMJ0", "gene_name": "Rps6ka3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2LMJ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LMJ0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A8C2LMJ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LMJ0" } ] } ] }, { "uniprot_ac": "A0A8C2LPE9", "gene_name": "Mast3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2LPE9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LPE9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A8C2LPE9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LPE9" } ] } ] }, { "uniprot_ac": "A0A8C2LPR4", "gene_name": "Mapkapk5", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2LPR4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LPR4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A8C2LPR4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LPR4" } ] } ] }, { "uniprot_ac": "A0A8C2LQB2", "gene_name": "Pak5", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2LQB2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LQB2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A8C2LQB2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LQB2" } ] } ] }, { "uniprot_ac": "A0A8C2LQS5", "gene_name": "Rps6kb1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2LQS5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LQS5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A8C2LQS5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LQS5" } ] } ] }, { "uniprot_ac": "A0A8C2LRT3", "gene_name": "Map3k5", "activity": [ { "ec_number": "2.7.11.25", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2LRT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LRT3" } ] }, { "ec_number": "2.7.11.25", "activity": "", "evidence": [ { "id": "A0A8C2LRT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LRT3" } ] } ] }, { "uniprot_ac": "A0A8C2LTD1", "gene_name": "Prkcb", "activity": [ { "ec_number": "2.7.11.13", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2LTD1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LTD1" } ] }, { "ec_number": "2.7.11.13", "activity": "", "evidence": [ { "id": "A0A8C2LTD1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LTD1" } ] } ] }, { "uniprot_ac": "A0A8C2LTT6", "gene_name": "Prkd2", "activity": [ { "ec_number": "2.7.11.13", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2LTT6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LTT6" } ] }, { "ec_number": "2.7.11.13", "activity": "", "evidence": [ { "id": "A0A8C2LTT6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LTT6" } ] } ] }, { "uniprot_ac": "A0A8C2LTW4", "gene_name": "Dclk1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2LTW4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LTW4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A8C2LTW4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LTW4" } ] } ] }, { "uniprot_ac": "A0A8C2LTZ7", "gene_name": "Tssk1b", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2LTZ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LTZ7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A8C2LTZ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LTZ7" } ] } ] }, { "uniprot_ac": "A0A8C2LVR4", "gene_name": "LOC100775051", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2LVR4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LVR4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A8C2LVR4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LVR4" } ] } ] }, { "uniprot_ac": "A0A8C2LVV5", "gene_name": "Camk1g", "activity": [ { "ec_number": "2.7.11.17", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2LVV5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LVV5" } ] }, { "ec_number": "2.7.11.17", "activity": "", "evidence": [ { "id": "A0A8C2LVV5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LVV5" } ] } ] }, { "uniprot_ac": "A0A8C2LY02", "gene_name": "Mapk11", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2LY02", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LY02" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "A0A8C2LY02", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LY02" } ] } ] }, { "uniprot_ac": "A0A8C2LY52", "gene_name": "Dyrk1b", "activity": [ { "ec_number": "2.7.12.1", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2LY52", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LY52" } ] }, { "ec_number": "2.7.12.1", "activity": "", "evidence": [ { "id": "A0A8C2LY52", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LY52" } ] } ] }, { "uniprot_ac": "A0A8C2LZT2", "gene_name": "Uhmk1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2LZT2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LZT2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A8C2LZT2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LZT2" } ] } ] }, { "uniprot_ac": "A0A8C2M0A2", "gene_name": "Mapk4", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2M0A2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M0A2" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "A0A8C2M0A2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M0A2" } ] } ] }, { "uniprot_ac": "A0A8C2M165", "gene_name": "Cdk4", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2M165", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M165" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "A0A8C2M165", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M165" } ] } ] }, { "uniprot_ac": "A0A8C2M187", "gene_name": "Map2k2", "activity": [ { "ec_number": "2.7.12.2", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2M187", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M187" } ] }, { "ec_number": "2.7.12.2", "activity": "", "evidence": [ { "id": "A0A8C2M187", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M187" } ] } ] }, { "uniprot_ac": "A0A8C2M1F6", "gene_name": "Cdk19", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2M1F6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M1F6" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "A0A8C2M1F6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M1F6" } ] } ] }, { "uniprot_ac": "A0A8C2M3Y9", "gene_name": "Aurka", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2M3Y9", "database": "UniProtKB", "url": 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"ec_number": "2.7.12.1", "activity": "", "evidence": [ { "id": "A0A8C2M4P9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4P9" } ] } ] }, { "uniprot_ac": "A0A8C2M4R2", "gene_name": "Map3k20", "activity": [ { "ec_number": "2.7.11.25", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2M4R2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4R2" } ] }, { "ec_number": "2.7.11.25", "activity": "", "evidence": [ { "id": "A0A8C2M4R2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M4R2" } ] } ] }, { "uniprot_ac": "A0A8C2M5A7", "gene_name": "Clk2", "activity": [ { "ec_number": "2.7.12.1", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2M5A7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5A7" } ] }, { "ec_number": "2.7.12.1", "activity": "", "evidence": [ { "id": "A0A8C2M5A7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5A7" } ] } ] }, { "uniprot_ac": "A0A8C2M5G2", "gene_name": "Map3k9", "activity": [ { "ec_number": "2.7.11.25", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2M5G2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5G2" } ] }, { "ec_number": "2.7.11.25", "activity": "", "evidence": [ { "id": "A0A8C2M5G2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5G2" } ] } ] }, { "uniprot_ac": "A0A8C2M6A3", "gene_name": "Pnck", "activity": [ { "ec_number": "2.7.11.17", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2M6A3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M6A3" } ] }, { "ec_number": "2.7.11.17", "activity": "", "evidence": [ { "id": "A0A8C2M6A3", "database": "UniProtKB", "url": 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"uniprot_ac": "A0A8C2M7I3", "gene_name": "Camkk1", "activity": [ { "ec_number": "2.7.11.17", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2M7I3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7I3" } ] }, { "ec_number": "2.7.11.17", "activity": "", "evidence": [ { "id": "A0A8C2M7I3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M7I3" } ] } ] }, { "uniprot_ac": "A0A8C2M9B6", "gene_name": "Mapkapk3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2M9B6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M9B6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A8C2M9B6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M9B6" } ] } ] }, { "uniprot_ac": "A0A8C2MAD7", "gene_name": "Pim1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2MAD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MAD7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A8C2MAD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MAD7" } ] } ] }, { "uniprot_ac": "A0A8C2MB66", "gene_name": "Gak", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2MB66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MB66" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A8C2MB66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MB66" } ] } ] }, { "uniprot_ac": "A0A8C2MBI9", "gene_name": "Tnk1", "activity": [ { "ec_number": "2.7.10.2", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2MBI9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBI9" } ] }, { "ec_number": "2.7.10.2", "activity": "", "evidence": [ { "id": "A0A8C2MBI9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBI9" } ] } ] }, { "uniprot_ac": "A0A8C2MBP2", "gene_name": "Rock2", "activity": [ { "ec_number": "2.7.11.39", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2MBP2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBP2" } ] }, { "ec_number": "2.7.11.39", "activity": "", "evidence": [ { "id": "A0A8C2MBP2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBP2" } ] } ] }, { "uniprot_ac": "A0A8C2MBW2", "gene_name": "Tp53rk", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2MBW2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBW2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A8C2MBW2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MBW2" } ] } ] }, { "uniprot_ac": "A0A8C2MC09", "gene_name": "Stk39", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2MC09", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MC09" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A8C2MC09", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MC09" } ] } ] }, { "uniprot_ac": "A0A8C2MCI5", "gene_name": "Pkn2", "activity": [ { "ec_number": "2.7.11.13", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2MCI5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCI5" } ] }, { "ec_number": "2.7.11.13", "activity": "", "evidence": [ { "id": "A0A8C2MCI5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCI5" } ] } ] }, { "uniprot_ac": "A0A8C2MCX3", "gene_name": "Cdk3", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2MCX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCX3" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "A0A8C2MCX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCX3" } ] } ] }, { "uniprot_ac": "A0A8C2MEU5", "gene_name": "Mark4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2MEU5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MEU5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A8C2MEU5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MEU5" } ] } ] }, { "uniprot_ac": "A0A8C2MFN1", "gene_name": "Ikbkb", "activity": [ { "ec_number": "2.7.11.10", "activity": "L-seryl-[I-kappa-B protein] + ATP = O-phospho-L-seryl-[I-kappa-B protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2MFN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFN1" } ] }, { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2MFN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFN1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A8C2MFN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFN1" } ] }, { "ec_number": "2.7.11.10", "activity": "", "evidence": [ { "id": "A0A8C2MFN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFN1" } ] } ] }, { "uniprot_ac": "A0A8C2MH43", "gene_name": "Map2k7", "activity": [ { "ec_number": "2.7.12.2", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2MH43", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MH43" } ] }, { "ec_number": "2.7.12.2", "activity": "", "evidence": [ { "id": "A0A8C2MH43", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MH43" } ] } ] }, { "uniprot_ac": "A0A8C2MJ02", "gene_name": "Rps6ka5", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2MJ02", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJ02" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A8C2MJ02", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJ02" } ] } ] }, { "uniprot_ac": "A0A8C2ML15", "gene_name": "Srpk1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2ML15", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2ML15" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A8C2ML15", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2ML15" } ] } ] }, { "uniprot_ac": "A0A8C2MMI4", "gene_name": "Riok1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2MMI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMI4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A8C2MMI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMI4" } ] } ] }, { "uniprot_ac": "A0A8C2MMQ4", "gene_name": "Cdc42bpa", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2MMQ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMQ4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A8C2MMQ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMQ4" } ] } ] }, { "uniprot_ac": "A0A8C2MMZ5", "gene_name": "Nuak1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2MMZ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMZ5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A8C2MMZ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MMZ5" } ] } ] }, { "uniprot_ac": "A0A8C2MP62", "gene_name": "Pik3ca", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2MP62", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MP62" } ] }, { "ec_number": "2.7.1.153", "activity": "a 1,2-diacyl-sn-glycero-3-phospho-(1D-myo-inositol-4,5-bisphosphate) + ATP = a 1,2-diacyl-sn-glycero-3-phospho-(1D-myo-inositol-3,4,5-trisphosphate) + ADP + H(+).", "evidence": [ { "id": "A0A8C2MP62", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MP62" } ] }, { "ec_number": "2.7.1.137", "activity": "a 1,2-diacyl-sn-glycero-3-phospho-(1D-myo-inositol) + ATP = a 1,2-diacyl-sn-glycero-3-phospho-(1D-myo-inositol-3-phosphate) + ADP + H(+).", "evidence": [ { "id": "A0A8C2MP62", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MP62" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A8C2MP62", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MP62" } ] }, { "ec_number": "2.7.1.137", "activity": "", "evidence": [ { "id": "A0A8C2MP62", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MP62" } ] }, { "ec_number": "2.7.1.153", "activity": "", "evidence": [ { "id": "A0A8C2MP62", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MP62" } ] } ] }, { "uniprot_ac": "A0A8C2MQ42", "gene_name": "Cdkl5", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2MQ42", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQ42" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "A0A8C2MQ42", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQ42" } ] } ] }, { "uniprot_ac": "A0A8C2MQ73", "gene_name": "Mapk13", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2MQ73", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQ73" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "A0A8C2MQ73", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQ73" } ] } ] }, { "uniprot_ac": "A0A8C2MQL9", "gene_name": "LOC100766643", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2MQL9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQL9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A8C2MQL9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQL9" } ] } ] }, { "uniprot_ac": "A0A8C2MQM0", "gene_name": "Camkk2", "activity": [ { "ec_number": "2.7.11.17", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2MQM0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQM0" } ] }, { "ec_number": "2.7.11.17", "activity": "", "evidence": [ { "id": "A0A8C2MQM0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQM0" } ] } ] }, { "uniprot_ac": "A0A8C2MQS3", "gene_name": "Taok2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2MQS3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQS3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A8C2MQS3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQS3" } ] } ] }, { "uniprot_ac": "A0A8C2MR08", "gene_name": "Stk36", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2MR08", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MR08" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A8C2MR08", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MR08" } ] } ] }, { "uniprot_ac": "A0A8C2MSQ2", "gene_name": "Mapk14", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2MSQ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSQ2" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "A0A8C2MSQ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MSQ2" } ] } ] }, { "uniprot_ac": "A0A8C2MTI7", "gene_name": "Dyrk3", "activity": [ { "ec_number": "2.7.12.1", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2MTI7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MTI7" } ] }, { "ec_number": "2.7.12.1", "activity": "", "evidence": [ { "id": "A0A8C2MTI7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MTI7" } ] } ] }, { "uniprot_ac": "A0A8C2MUQ5", "gene_name": "Mapkapk2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2MUQ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUQ5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A8C2MUQ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUQ5" } ] } ] }, { "uniprot_ac": "A0A8C2MV78", "gene_name": "Clk3", "activity": [ { "ec_number": "2.7.12.1", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A8C2MV78", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MV78" } ] }, { "ec_number": "2.7.12.1", "activity": "", "evidence": [ { "id": "A0A8C2MV78", "database": "UniProtKB", "url": 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"uniprot_ac": "A0A9J7F0G6", "gene_name": "Camk2b", "activity": [ { "ec_number": "2.7.11.17", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7F0G6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0G6" } ] }, { "ec_number": "2.7.11.17", "activity": "", "evidence": [ { "id": "A0A9J7F0G6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0G6" } ] } ] }, { "uniprot_ac": "A0A9J7F0J6", "gene_name": "Hipk2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7F0J6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0J6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7F0J6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0J6" } ] } ] }, { "uniprot_ac": "A0A9J7F0N6", "gene_name": "LOC100770091", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7F0N6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0N6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7F0N6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0N6" } ] } ] }, { "uniprot_ac": "A0A9J7F0Y2", "gene_name": "Srpk1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7F0Y2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0Y2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7F0Y2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0Y2" } ] } ] }, { "uniprot_ac": "A0A9J7F1D2", "gene_name": "Tnik", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7F1D2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1D2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7F1D2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1D2" } ] } ] }, { "uniprot_ac": "A0A9J7F2F1", "gene_name": "Prkcd", "activity": [ { "ec_number": "2.7.11.13", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7F2F1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2F1" } ] }, { "ec_number": "2.7.11.13", "activity": "", "evidence": [ { "id": "A0A9J7F2F1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2F1" } ] } ] }, { "uniprot_ac": "A0A9J7F2L0", "gene_name": "Ripk3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7F2L0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2L0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7F2L0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2L0" } ] } ] }, { "uniprot_ac": "A0A9J7F383", "gene_name": "LOC113833167", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7F383", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F383" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7F383", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F383" } ] } ] }, { "uniprot_ac": "A0A9J7F3R3", "gene_name": "Braf", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7F3R3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3R3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7F3R3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3R3" } ] } ] }, { "uniprot_ac": "A0A9J7F4P4", "gene_name": "Tnni3k", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7F4P4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4P4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7F4P4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4P4" } ] } ] }, { "uniprot_ac": "A0A9J7F5B0", "gene_name": "Plk4", "activity": [ { "ec_number": "2.7.11.21", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7F5B0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5B0" } ] }, { "ec_number": "2.7.11.21", "activity": "", "evidence": [ { "id": "A0A9J7F5B0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5B0" } ] } ] }, { "uniprot_ac": "A0A9J7F773", "gene_name": "Pklr", "activity": [ { "ec_number": "2.7.1.40", "activity": "ITP + pyruvate = IDP + phosphoenolpyruvate + H(+).", "evidence": [ { "id": "A0A9J7F773", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F773" } ] }, { "ec_number": "2.7.1.40", "activity": "", "evidence": [ { "id": "A0A9J7F773", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F773" } ] } ] }, { "uniprot_ac": "A0A9J7F821", "gene_name": "Hipk1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7F821", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F821" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7F821", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F821" } ] } ] }, { "uniprot_ac": "A0A9J7F842", "gene_name": "Pikfyve", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7F842", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F842" } ] }, { "ec_number": "2.7.1.150", "activity": "a 1,2-diacyl-sn-glycero-3-phospho-(1D-myo-inositol-3-phosphate) + ATP = a 1,2-diacyl-sn-glycero-3-phospho-(1D-myo-inositol-3,5-bisphosphate) + ADP + H(+).", "evidence": [ { "id": "A0A9J7F842", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F842" } ] }, { "ec_number": "2.7.1.150", "activity": "", "evidence": [ { "id": "A0A9J7F842", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F842" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": 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"https://www.uniprot.org/uniprotkb/A0A9J7F8T9" } ] } ] }, { "uniprot_ac": "A0A9J7F8V5", "gene_name": "Nek3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7F8V5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8V5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7F8V5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8V5" } ] } ] }, { "uniprot_ac": "A0A9J7F927", "gene_name": "Map3k12", "activity": [ { "ec_number": "2.7.11.25", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7F927", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F927" } ] }, { "ec_number": "2.7.11.25", "activity": "", "evidence": [ { "id": "A0A9J7F927", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F927" } ] } ] }, { "uniprot_ac": "A0A9J7F985", "gene_name": "LOC118237656", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7F985", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F985" } ] }, { "ec_number": "2.7.11.23", "activity": "[DNA-directed RNA polymerase] + ATP = phospho-[DNA-directed RNA polymerase] + ADP + H(+).", "evidence": [ { "id": "A0A9J7F985", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F985" } ] }, { "ec_number": "2.7.11.23", "activity": "", "evidence": [ { "id": "A0A9J7F985", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F985" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "A0A9J7F985", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F985" } ] } ] }, { "uniprot_ac": "A0A9J7F9C4", "gene_name": "Nek5", "activity": [ { "ec_number": "2.7.11.1", "activity": 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"https://www.uniprot.org/uniprotkb/A0A9J7FDV1" } ] }, { "ec_number": "2.7.11.23", "activity": "[DNA-directed RNA polymerase] + ATP = phospho-[DNA-directed RNA polymerase] + ADP + H(+).", "evidence": [ { "id": "A0A9J7FDV1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDV1" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "A0A9J7FDV1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDV1" } ] }, { "ec_number": "2.7.11.23", "activity": "", "evidence": [ { "id": "A0A9J7FDV1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDV1" } ] } ] }, { "uniprot_ac": "A0A9J7FEY2", "gene_name": "Csnk1a1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7FEY2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEY2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7FEY2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEY2" } ] } ] }, { "uniprot_ac": "A0A9J7FF13", "gene_name": "Stk40", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7FF13", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FF13" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7FF13", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FF13" } ] } ] }, { "uniprot_ac": "A0A9J7FF35", "gene_name": "Mknk1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7FF35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FF35" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7FF35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FF35" } ] } ] }, { "uniprot_ac": "A0A9J7FFS7", "gene_name": "Map3k7", "activity": [ { "ec_number": "2.7.11.25", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7FFS7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFS7" } ] }, { "ec_number": "2.7.11.25", "activity": "", "evidence": [ { "id": "A0A9J7FFS7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFS7" } ] } ] }, { "uniprot_ac": "A0A9J7FGD3", "gene_name": "Trio", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7FGD3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGD3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7FGD3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGD3" } ] } ] }, { "uniprot_ac": "A0A9J7FGF7", "gene_name": "LOC100751450", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7FGF7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGF7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7FGF7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGF7" } ] } ] }, { "uniprot_ac": "A0A9J7FI14", "gene_name": "Prkaa2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7FI14", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FI14" } ] }, { "ec_number": "2.7.11.31", "activity": "L-seryl-[acetyl-CoA carboxylase] + ATP = O-phospho-L-seryl-[acetyl-CoA carboxylase] + ADP + H(+).", "evidence": [ { "id": "A0A9J7FI14", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FI14" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7FI14", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FI14" } ] }, { "ec_number": "2.7.11.31", "activity": "", "evidence": [ { "id": "A0A9J7FI14", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FI14" } ] } ] }, { "uniprot_ac": "A0A9J7FJ23", "gene_name": "LOC100757928", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7FJ23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ23" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7FJ23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ23" } ] } ] }, { "uniprot_ac": "A0A9J7FKM1", "gene_name": "Melk", "activity": [ { "ec_number": "2.7.10.2", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7FKM1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKM1" } ] }, { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7FKM1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKM1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7FKM1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKM1" } ] }, { "ec_number": "2.7.10.2", "activity": "", "evidence": [ { "id": "A0A9J7FKM1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKM1" } ] } ] }, { "uniprot_ac": "A0A9J7FKM9", "gene_name": "LOC113834545", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7FKM9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKM9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7FKM9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKM9" } ] } ] }, { "uniprot_ac": "A0A9J7FLY5", "gene_name": "Mapk15", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7FLY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLY5" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "A0A9J7FLY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLY5" } ] } ] }, { "uniprot_ac": "A0A9J7FN24", "gene_name": "Alpk3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7FN24", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FN24" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7FN24", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FN24" } ] } ] }, { "uniprot_ac": "A0A9J7FN52", "gene_name": "Prkaca", "activity": [ { "ec_number": "2.7.11.11", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7FN52", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FN52" } ] }, { "ec_number": "2.7.11.11", "activity": "", "evidence": [ { "id": "A0A9J7FN52", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FN52" } ] } ] }, { "uniprot_ac": "A0A9J7FN68", "gene_name": "Mast1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7FN68", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FN68" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7FN68", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FN68" } ] } ] }, { "uniprot_ac": "A0A9J7FNF0", "gene_name": "Map4k2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7FNF0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNF0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7FNF0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNF0" } ] } ] }, { "uniprot_ac": "A0A9J7FS53", "gene_name": "Ttk", "activity": [ { "ec_number": "2.7.12.1", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7FS53", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS53" } ] }, { "ec_number": "2.7.12.1", "activity": "", "evidence": [ { "id": "A0A9J7FS53", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FS53" } ] } ] }, { "uniprot_ac": "A0A9J7FUL0", "gene_name": "Smg1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7FUL0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUL0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7FUL0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUL0" } ] } ] }, { "uniprot_ac": "A0A9J7FVR6", "gene_name": "Cit", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7FVR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVR6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7FVR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVR6" } ] } ] }, { "uniprot_ac": "A0A9J7FYJ6", "gene_name": "Hunk", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7FYJ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYJ6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7FYJ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYJ6" } ] } ] }, { "uniprot_ac": "A0A9J7FYY3", "gene_name": "Pik3r4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7FYY3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYY3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7FYY3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYY3" } ] } ] }, { "uniprot_ac": "A0A9J7FZ18", "gene_name": "Ulk1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7FZ18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZ18" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7FZ18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZ18" } ] } ] }, { "uniprot_ac": "A0A9J7FZA7", "gene_name": "Limk1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7FZA7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZA7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7FZA7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZA7" } ] } ] }, { "uniprot_ac": "A0A9J7FZH7", "gene_name": "LOC113835540", "activity": [ { "ec_number": "2.7.12.2", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7FZH7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZH7" } ] }, { "ec_number": "2.7.12.2", "activity": "", "evidence": [ { "id": "A0A9J7FZH7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZH7" } ] } ] }, { "uniprot_ac": "A0A9J7FZW1", "gene_name": "Mok", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7FZW1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZW1" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "A0A9J7FZW1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZW1" } ] } ] }, { "uniprot_ac": "A0A9J7FZY8", "gene_name": "Pik3cb", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7FZY8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZY8" } ] }, { "ec_number": "2.7.1.153", "activity": "a 1,2-diacyl-sn-glycero-3-phospho-(1D-myo-inositol-4,5-bisphosphate) + ATP = a 1,2-diacyl-sn-glycero-3-phospho-(1D-myo-inositol-3,4,5-trisphosphate) + ADP + H(+).", "evidence": [ { "id": "A0A9J7FZY8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZY8" } ] }, { "ec_number": "2.7.1.153", "activity": "", "evidence": [ { "id": "A0A9J7FZY8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZY8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7FZY8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZY8" } ] } ] }, { "uniprot_ac": "A0A9J7G180", "gene_name": "Dstyk", "activity": [ { "ec_number": "2.7.12.1", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7G180", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G180" } ] }, { "ec_number": "2.7.12.1", "activity": "", "evidence": [ { "id": "A0A9J7G180", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G180" } ] } ] }, { "uniprot_ac": "A0A9J7G1D9", "gene_name": "Ulk4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7G1D9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1D9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7G1D9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1D9" } ] } ] }, { "uniprot_ac": "A0A9J7G1H0", "gene_name": "Map4k5", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7G1H0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1H0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7G1H0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1H0" } ] } ] }, { "uniprot_ac": "A0A9J7G270", "gene_name": "LOC100754226", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7G270", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G270" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7G270", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G270" } ] } ] }, { "uniprot_ac": "A0A9J7G368", "gene_name": "Stk11", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7G368", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G368" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7G368", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G368" } ] } ] }, { "uniprot_ac": "A0A9J7G3C1", "gene_name": "Dapk3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7G3C1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3C1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7G3C1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G3C1" } ] } ] }, { "uniprot_ac": "A0A9J7G4B8", "gene_name": "Cdk18", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7G4B8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4B8" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "A0A9J7G4B8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G4B8" } ] } ] }, { "uniprot_ac": "A0A9J7G5F3", "gene_name": "Plk5", "activity": [ { "ec_number": "2.7.11.21", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7G5F3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5F3" } ] }, { "ec_number": "2.7.11.21", "activity": "", "evidence": [ { "id": "A0A9J7G5F3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5F3" } ] } ] }, { "uniprot_ac": "A0A9J7G5N9", "gene_name": "Stk35", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7G5N9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5N9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7G5N9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G5N9" } ] } ] }, { "uniprot_ac": "A0A9J7G6S5", "gene_name": "Trpm7", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7G6S5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6S5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7G6S5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G6S5" } ] } ] }, { "uniprot_ac": "A0A9J7G8N0", "gene_name": "LOC100770044", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7G8N0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G8N0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7G8N0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G8N0" } ] } ] }, { "uniprot_ac": "A0A9J7G8N4", "gene_name": "Sgk2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7G8N4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G8N4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7G8N4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G8N4" } ] } ] }, { "uniprot_ac": "A0A9J7G969", "gene_name": "LOC100754771", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7G969", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G969" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7G969", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G969" } ] } ] }, { "uniprot_ac": "A0A9J7G9D1", "gene_name": "Hipk3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7G9D1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9D1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7G9D1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G9D1" } ] } ] }, { "uniprot_ac": "A0A9J7GAB0", "gene_name": "Pkn3", "activity": [ { "ec_number": "2.7.11.13", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7GAB0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAB0" } ] }, { "ec_number": "2.7.11.13", "activity": "", "evidence": [ { "id": "A0A9J7GAB0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAB0" } ] } ] }, { "uniprot_ac": "A0A9J7GAF4", "gene_name": "Stk10", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7GAF4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAF4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7GAF4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GAF4" } ] } ] }, { "uniprot_ac": "A0A9J7GBF4", "gene_name": "Csnk1d", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7GBF4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBF4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7GBF4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBF4" } ] } ] }, { "uniprot_ac": "A0A9J7GBI2", "gene_name": "LOC100771767", "activity": [ { "ec_number": "2.7.12.2", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7GBI2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBI2" } ] }, { "ec_number": "2.7.12.2", "activity": "", "evidence": [ { "id": "A0A9J7GBI2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBI2" } ] } ] }, { "uniprot_ac": "A0A9J7GBL6", "gene_name": "Ttbk2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7GBL6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBL6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7GBL6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBL6" } ] } ] }, { "uniprot_ac": "A0A9J7GD76", "gene_name": "Taok1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7GD76", "database": "UniProtKB", "url": 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"uniprot_ac": "A0A9J7GHK2", "gene_name": "LOC100753695", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7GHK2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHK2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7GHK2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHK2" } ] } ] }, { "uniprot_ac": "A0A9J7GHV2", "gene_name": "LOC100773845", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7GHV2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHV2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7GHV2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHV2" } ] } ] }, { "uniprot_ac": "A0A9J7GI33", "gene_name": "Map3k10", "activity": [ { "ec_number": "2.7.11.25", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7GI33", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI33" } ] }, { "ec_number": "2.7.11.25", "activity": "", "evidence": [ { "id": "A0A9J7GI33", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI33" } ] } ] }, { "uniprot_ac": "A0A9J7GIC4", "gene_name": "Stk26", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7GIC4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIC4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7GIC4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIC4" } ] } ] }, { "uniprot_ac": "A0A9J7GIM1", "gene_name": "Cdk16", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7GIM1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIM1" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "A0A9J7GIM1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIM1" } ] } ] }, { "uniprot_ac": "A0A9J7GIN7", "gene_name": "Eif2ak3", "activity": [ { "ec_number": "2.7.10.2", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7GIN7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIN7" } ] }, { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7GIN7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIN7" } ] }, { "ec_number": "2.7.10.2", "activity": "", "evidence": [ { "id": "A0A9J7GIN7", "database": 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"ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7GLT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GLT3" } ] } ] }, { "uniprot_ac": "A0A9J7GMF3", "gene_name": "LOC103158537", "activity": [ { "ec_number": "2.7.12.2", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7GMF3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GMF3" } ] }, { "ec_number": "2.7.12.2", "activity": "", "evidence": [ { "id": "A0A9J7GMF3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GMF3" } ] } ] }, { "uniprot_ac": "A0A9J7GMK5", "gene_name": "Sbk3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7GMK5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GMK5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7GMK5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GMK5" } ] } ] }, { "uniprot_ac": "A0A9J7GP29", "gene_name": "Stk32a", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7GP29", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GP29" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7GP29", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GP29" } ] } ] }, { "uniprot_ac": "A0A9J7GPQ3", "gene_name": "Pim2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7GPQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GPQ3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7GPQ3", "database": "UniProtKB", "url": 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} ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7H0E7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0E7" } ] } ] }, { "uniprot_ac": "A0A9J7H0W8", "gene_name": "Dapk2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7H0W8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0W8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7H0W8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0W8" } ] } ] }, { "uniprot_ac": "A0A9J7H1I4", "gene_name": "LOC100764243", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7H1I4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1I4" } ] }, { "ec_number": "2.7.11.1", "activity": "", 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"ec_number": "2.7.11.11", "activity": "", "evidence": [ { "id": "A0A9J7H7J5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7J5" } ] } ] }, { "uniprot_ac": "A0A9J7H7W6", "gene_name": "LOC113837158", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7H7W6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7W6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7H7W6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7W6" } ] } ] }, { "uniprot_ac": "A0A9J7H8E3", "gene_name": "Map3k15", "activity": [ { "ec_number": "2.7.11.25", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7H8E3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8E3" } ] }, { "ec_number": "2.7.11.25", "activity": "", "evidence": [ { "id": "A0A9J7H8E3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8E3" } ] } ] }, { "uniprot_ac": "A0A9J7H8L4", "gene_name": "Irak1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7H8L4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8L4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7H8L4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8L4" } ] } ] }, { "uniprot_ac": "A0A9J7H8U3", "gene_name": "Wnk3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7H8U3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8U3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7H8U3", "database": "UniProtKB", "url": 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"activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7J1N3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J1N3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7J1N3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J1N3" } ] } ] }, { "uniprot_ac": "A0A9J7J5Z8", "gene_name": "Camk2g", "activity": [ { "ec_number": "2.7.11.17", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7J5Z8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5Z8" } ] }, { "ec_number": "2.7.11.17", "activity": "", "evidence": [ { "id": "A0A9J7J5Z8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5Z8" } ] } ] }, { "uniprot_ac": "A0A9J7J6E9", "gene_name": "Vrk2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7J6E9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6E9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7J6E9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6E9" } ] } ] }, { "uniprot_ac": "A0A9J7J6H1", "gene_name": "LOC100752268", "activity": [ { "ec_number": "2.7.11.17", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7J6H1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6H1" } ] }, { "ec_number": "2.7.11.17", "activity": "", "evidence": [ { "id": "A0A9J7J6H1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6H1" } ] } ] }, { "uniprot_ac": "A0A9J7J728", "gene_name": "LOC113832236", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7J728", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J728" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7J728", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J728" } ] } ] }, { "uniprot_ac": "A0A9J7JA07", "gene_name": "LOC100750629", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7JA07", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JA07" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7JA07", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JA07" } ] } ] }, { "uniprot_ac": "A0A9J7JAB2", "gene_name": "Stk24", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7JAB2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAB2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7JAB2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAB2" } ] } ] }, { "uniprot_ac": "A0A9J7JAM4", "gene_name": "Sik1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7JAM4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAM4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7JAM4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAM4" } ] } ] }, { "uniprot_ac": "A0A9J7JB60", "gene_name": "Dclk2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7JB60", "database": "UniProtKB", "url": 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"ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7JDU1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDU1" } ] } ] }, { "uniprot_ac": "A0A9J7JGG9", "gene_name": "Riok2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7JGG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGG9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7JGG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGG9" } ] } ] }, { "uniprot_ac": "A0A9J7JGQ1", "gene_name": "Trpm6", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7JGQ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGQ1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": 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"https://www.uniprot.org/uniprotkb/A0A9J7JHJ2" } ] } ] }, { "uniprot_ac": "A0A9J7JIF8", "gene_name": "Prkd1", "activity": [ { "ec_number": "2.7.11.13", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7JIF8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JIF8" } ] }, { "ec_number": "2.7.11.13", "activity": "", "evidence": [ { "id": "A0A9J7JIF8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JIF8" } ] } ] }, { "uniprot_ac": "A0A9J7JIW6", "gene_name": "Pkn1", "activity": [ { "ec_number": "2.7.11.13", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7JIW6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JIW6" } ] }, { "ec_number": "2.7.11.13", "activity": "", "evidence": [ { "id": "A0A9J7JIW6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JIW6" } ] } ] }, { "uniprot_ac": "A0A9J7JJV6", "gene_name": "Mark1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7JJV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJV6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7JJV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJV6" } ] }, { "ec_number": "2.7.11.26", "activity": "L-seryl-[tau protein] + ATP = O-phospho-L-seryl-[tau protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7JJV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJV6" } ] }, { "ec_number": "2.7.11.26", "activity": "", "evidence": [ { "id": "A0A9J7JJV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JJV6" } ] } ] }, { "uniprot_ac": "A0A9J7JKJ1", "gene_name": "Sik2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7JKJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKJ1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7JKJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKJ1" } ] } ] }, { "uniprot_ac": "A0A9J7JLH7", "gene_name": "Mark2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7JLH7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLH7" } ] }, { "ec_number": "2.7.11.26", "activity": "L-seryl-[tau protein] + ATP = O-phospho-L-seryl-[tau protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7JLH7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLH7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7JLH7", "database": "UniProtKB", "url": 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"ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7JNU2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNU2" } ] }, { "ec_number": "2.7.10.2", "activity": "", "evidence": [ { "id": "A0A9J7JNU2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNU2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7JNU2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNU2" } ] } ] }, { "uniprot_ac": "A0A9J7JPD7", "gene_name": "Lmtk2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7JPD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPD7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7JPD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPD7" } ] } ] }, { "uniprot_ac": "A0A9J7JPE2", "gene_name": "Map4k3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7JPE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPE2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7JPE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPE2" } ] } ] }, { "uniprot_ac": "A0A9J7JPF2", "gene_name": "LOC100765388", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7JPF2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPF2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7JPF2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPF2" } ] } ] }, { "uniprot_ac": "A0A9J7JPI2", "gene_name": "Ksr1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7JPI2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPI2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7JPI2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPI2" } ] } ] }, { "uniprot_ac": "A0A9J7JPY1", "gene_name": "Rps6kc1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7JPY1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPY1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7JPY1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPY1" } ] } ] }, { "uniprot_ac": "A0A9J7JQD1", "gene_name": "Ulk3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7JQD1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQD1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7JQD1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQD1" } ] } ] }, { "uniprot_ac": "A0A9J7JQV6", "gene_name": "Pkm", "activity": [ { "ec_number": "2.7.1.40", "activity": "ITP + pyruvate = IDP + phosphoenolpyruvate + H(+).", "evidence": [ { "id": "A0A9J7JQV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQV6" } ] }, { "ec_number": "2.7.1.40", "activity": "", "evidence": [ { "id": "A0A9J7JQV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQV6" } ] } ] }, { "uniprot_ac": "A0A9J7JQZ1", "gene_name": "Wnk1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7JQZ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQZ1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7JQZ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQZ1" } ] } ] }, { "uniprot_ac": "A0A9J7JRI3", "gene_name": "Cdc42bpb", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7JRI3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRI3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7JRI3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRI3" } ] } ] }, { "uniprot_ac": "A0A9J7JRJ8", "gene_name": "Mark3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7JRJ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRJ8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7JRJ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JRJ8" } ] } ] }, { "uniprot_ac": "A0A9J7JSB5", "gene_name": "LOC113836186", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7JSB5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSB5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7JSB5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSB5" } ] } ] }, { "uniprot_ac": "A0A9J7JTJ0", "gene_name": "LOC113838440", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7JTJ0", "database": "UniProtKB", "url": 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{ "id": "A0A9J7JTL3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTL3" } ] } ] }, { "uniprot_ac": "A0A9J7JU24", "gene_name": "Camk2a", "activity": [ { "ec_number": "2.7.11.17", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7JU24", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JU24" } ] }, { "ec_number": "2.7.11.17", "activity": "", "evidence": [ { "id": "A0A9J7JU24", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JU24" } ] } ] }, { "uniprot_ac": "A0A9J7JXM2", "gene_name": "Dcaf1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7JXM2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JXM2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7JXM2", "database": "UniProtKB", "url": 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"2.7.11.23", "activity": "", "evidence": [ { "id": "A0A9J7K2Q7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2Q7" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "A0A9J7K2Q7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2Q7" } ] } ] }, { "uniprot_ac": "A0A9J7K2S5", "gene_name": "Cask", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7K2S5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2S5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7K2S5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2S5" } ] } ] }, { "uniprot_ac": "A0A9J7K3L1", "gene_name": "LOC100755238", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7K3L1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3L1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7K3L1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3L1" } ] } ] }, { "uniprot_ac": "A0A9J7K3S4", "gene_name": "Mast4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7K3S4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3S4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7K3S4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3S4" } ] } ] }, { "uniprot_ac": "A0A9J7K4N6", "gene_name": "Sik3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7K4N6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4N6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7K4N6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4N6" } ] } ] }, { "uniprot_ac": "A0A9J7K6R5", "gene_name": "Nek11", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7K6R5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K6R5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7K6R5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K6R5" } ] } ] }, { "uniprot_ac": "A0A9J7K7C7", "gene_name": "Gsk3b", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7K7C7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7C7" } ] }, { "ec_number": "2.7.11.26", "activity": "L-seryl-[tau protein] + ATP = O-phospho-L-seryl-[tau protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7K7C7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7C7" } ] }, { "ec_number": "2.7.11.26", "activity": "", "evidence": [ { "id": "A0A9J7K7C7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7C7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7K7C7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7C7" } ] } ] }, { "uniprot_ac": "A0A9J7K7D8", "gene_name": "LOC100757073", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7K7D8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7D8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7K7D8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7D8" } ] } ] }, { "uniprot_ac": "A0A9J7K851", "gene_name": "Dclk3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7K851", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K851" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7K851", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K851" } ] } ] }, { "uniprot_ac": "A0A9J7K8Y1", "gene_name": "Lmtk3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7K8Y1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8Y1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7K8Y1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8Y1" } ] } ] }, { "uniprot_ac": "A0A9J7K953", "gene_name": "Cdkl1", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7K953", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K953" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "A0A9J7K953", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K953" } ] } ] }, { "uniprot_ac": "A0A9J7KB54", "gene_name": "LOC118237737", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7KB54", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB54" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7KB54", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB54" } ] } ] }, { "uniprot_ac": "A0A9J7KC95", "gene_name": "Rps6ka6", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7KC95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KC95" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7KC95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KC95" } ] } ] }, { "uniprot_ac": "A0A9J7KCM5", "gene_name": "LOC113837018", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7KCM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCM5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7KCM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCM5" } ] } ] }, { "uniprot_ac": "A0A9J7KCN2", "gene_name": "LOC107977720", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7KCN2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCN2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7KCN2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCN2" } ] } ] }, { "uniprot_ac": "A0A9J7KDV7", "gene_name": "Cdk14", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7KDV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDV7" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "A0A9J7KDV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDV7" } ] }, { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7KDV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDV7" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "A0A9J7KDV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDV7" } ] } ] }, { "uniprot_ac": "A0A9J7KE81", "gene_name": "Nek4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7KE81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE81" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7KE81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE81" } ] } ] }, { "uniprot_ac": "A0A9J7KFV8", "gene_name": "Tssk4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "A0A9J7KFV8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFV8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "A0A9J7KFV8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFV8" } ] } ] }, { "uniprot_ac": "G3GRI0", "gene_name": "Mapk6", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "G3GRI0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3GRI0" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "G3GRI0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3GRI0" } ] } ] }, { "uniprot_ac": "G3GRR1", "gene_name": "Cdk10", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "G3GRR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3GRR1" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "G3GRR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3GRR1" } ] } ] }, { "uniprot_ac": "G3GUA6", "gene_name": "Tlk1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "G3GUA6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3GUA6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "G3GUA6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3GUA6" } ] } ] }, { "uniprot_ac": "G3GVI7", "gene_name": "Map2k3", "activity": [ { "ec_number": "2.7.12.2", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "G3GVI7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3GVI7" } ] }, { "ec_number": "2.7.12.2", "activity": "", "evidence": [ { "id": "G3GVI7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3GVI7" } ] } ] }, { "uniprot_ac": "G3GWJ3", "gene_name": "Cdk8", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "G3GWJ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3GWJ3" } ] }, { "ec_number": "2.7.11.23", "activity": "[DNA-directed RNA polymerase] + ATP = phospho-[DNA-directed RNA polymerase] + ADP + H(+).", "evidence": [ { "id": "G3GWJ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3GWJ3" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "G3GWJ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3GWJ3" } ] }, { "ec_number": "2.7.11.23", "activity": "", "evidence": [ { "id": "G3GWJ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3GWJ3" } ] } ] }, { "uniprot_ac": "G3GWN1", "gene_name": "LOC100755333", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "G3GWN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3GWN1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "G3GWN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3GWN1" } ] } ] }, { "uniprot_ac": "G3GX92", "gene_name": "Camk1", "activity": [ { "ec_number": "2.7.11.17", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "G3GX92", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3GX92" } ] }, { "ec_number": "2.7.11.17", "activity": "", "evidence": [ { "id": "G3GX92", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3GX92" } ] } ] }, { "uniprot_ac": "G3GY19", "gene_name": "Dyrk2", "activity": [ { "ec_number": "2.7.12.1", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "G3GY19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3GY19" } ] }, { "ec_number": "2.7.12.1", "activity": "", "evidence": [ { "id": "G3GY19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3GY19" } ] } ] }, { "uniprot_ac": "G3GYQ3", "gene_name": "Tesk2", "activity": [ { "ec_number": "2.7.12.1", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "G3GYQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3GYQ3" } ] }, { "ec_number": "2.7.12.1", "activity": "", "evidence": [ { "id": "G3GYQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3GYQ3" } ] } ] }, { "uniprot_ac": "G3H3C3", "gene_name": "Nek1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "G3H3C3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3H3C3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "G3H3C3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3H3C3" } ] } ] }, { "uniprot_ac": "G3H3S6", "gene_name": "Lats1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "G3H3S6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3H3S6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "G3H3S6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3H3S6" } ] } ] }, { "uniprot_ac": "G3H5L5", "gene_name": "Rps6ka3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "G3H5L5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3H5L5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "G3H5L5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3H5L5" } ] } ] }, { "uniprot_ac": "G3H8I4", "gene_name": "Lats2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "G3H8I4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3H8I4" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "G3H8I4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3H8I4" } ] } ] }, { "uniprot_ac": "G3HAZ9", "gene_name": "Dyrk3", "activity": [ { "ec_number": "2.7.12.1", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "G3HAZ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HAZ9" } ] }, { "ec_number": "2.7.12.1", "activity": "", "evidence": [ { "id": "G3HAZ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HAZ9" } ] } ] }, { "uniprot_ac": "G3HBD4", "gene_name": "LOC100765914", "activity": [ { "ec_number": "2.7.4.6", "activity": "UDP + ATP = UTP + ADP.", "evidence": [ { "id": "G3HBD4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HBD4" } ] }, { "ec_number": "2.7.4.6", "activity": "", "evidence": [ { "id": "G3HBD4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HBD4" } ] } ] }, { "uniprot_ac": "G3HBI7", "gene_name": "Cdk17", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "G3HBI7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HBI7" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "G3HBI7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HBI7" } ] } ] }, { "uniprot_ac": "G3HCC1", "gene_name": "Chek2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "G3HCC1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HCC1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "G3HCC1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HCC1" } ] } ] }, { "uniprot_ac": "G3HDE8", "gene_name": "Pck2", "activity": [ { "ec_number": "4.1.1.32", "activity": "ITP + oxaloacetate = IDP + phosphoenolpyruvate + CO2.", "evidence": [ { "id": "G3HDE8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HDE8" } ] }, { "ec_number": "4.1.1.32", "activity": "", "evidence": [ { "id": "G3HDE8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HDE8" } ] } ] }, { "uniprot_ac": "G3HEH4", "gene_name": "Clk3", "activity": [ { "ec_number": "2.7.12.1", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "G3HEH4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HEH4" } ] }, { "ec_number": "2.7.12.1", "activity": "", "evidence": [ { "id": "G3HEH4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HEH4" } ] } ] }, { "uniprot_ac": "G3HER3", "gene_name": "Tssk2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "G3HER3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HER3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "G3HER3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HER3" } ] } ] }, { "uniprot_ac": "G3HLS6", "gene_name": "Stk4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "G3HLS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HLS6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "G3HLS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HLS6" } ] } ] }, { "uniprot_ac": "G3HMY1", "gene_name": "Nim1k", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "G3HMY1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HMY1" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "G3HMY1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HMY1" } ] } ] }, { "uniprot_ac": "G3HT38", "gene_name": "Mastl", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "G3HT38", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HT38" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "G3HT38", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HT38" } ] } ] }, { "uniprot_ac": "G3HTW4", "gene_name": "Cdk3", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "G3HTW4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HTW4" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "G3HTW4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HTW4" } ] } ] }, { "uniprot_ac": "G3HV08", "gene_name": "Cdk9", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "G3HV08", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HV08" } ] }, { "ec_number": "2.7.11.23", "activity": "[DNA-directed RNA polymerase] + ATP = phospho-[DNA-directed RNA polymerase] + ADP + H(+).", "evidence": [ { "id": "G3HV08", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HV08" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "G3HV08", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HV08" } ] }, { "ec_number": "2.7.11.23", "activity": "", "evidence": [ { "id": "G3HV08", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HV08" } ] } ] }, { "uniprot_ac": "G3HVB0", "gene_name": "Dyrk1a", "activity": [ { "ec_number": "2.7.11.23", "activity": "[DNA-directed RNA polymerase] + ATP = phospho-[DNA-directed RNA polymerase] + ADP + H(+).", "evidence": [ { "id": "G3HVB0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HVB0" } ] }, { "ec_number": "2.7.12.1", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "G3HVB0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HVB0" } ] }, { "ec_number": "2.7.11.23", "activity": "", "evidence": [ { "id": "G3HVB0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HVB0" } ] }, { "ec_number": "2.7.12.1", "activity": "", "evidence": [ { "id": "G3HVB0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HVB0" } ] } ] }, { "uniprot_ac": "G3HVN3", "gene_name": "Raf1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "G3HVN3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HVN3" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "G3HVN3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HVN3" } ] } ] }, { "uniprot_ac": "G3HX91", "gene_name": "Prkd3", "activity": [ { "ec_number": "2.7.11.13", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "G3HX91", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HX91" } ] }, { "ec_number": "2.7.11.13", "activity": "", "evidence": [ { "id": "G3HX91", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HX91" } ] } ] }, { "uniprot_ac": "G3HXQ8", "gene_name": "Map3k8", "activity": [ { "ec_number": "2.7.11.25", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "G3HXQ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HXQ8" } ] }, { "ec_number": "2.7.11.25", "activity": "", "evidence": [ { "id": "G3HXQ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HXQ8" } ] } ] }, { "uniprot_ac": "G3HY42", "gene_name": "Akt3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "G3HY42", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HY42" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "G3HY42", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HY42" } ] } ] }, { "uniprot_ac": "G3HZ18", "gene_name": "LOC100756665", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "G3HZ18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HZ18" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "G3HZ18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HZ18" } ] } ] }, { "uniprot_ac": "G3HZH7", "gene_name": "Pak3", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "G3HZH7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HZH7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "G3HZH7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HZH7" } ] } ] }, { "uniprot_ac": "G3HZU1", "gene_name": "Mapk14", "activity": [ { "ec_number": "2.7.11.24", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "G3HZU1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HZU1" } ] }, { "ec_number": "2.7.11.24", "activity": "", "evidence": [ { "id": "G3HZU1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HZU1" } ] } ] }, { "uniprot_ac": "G3I0W5", "gene_name": "Stk38l", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "G3I0W5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3I0W5" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "G3I0W5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3I0W5" } ] } ] }, { "uniprot_ac": "G3I3E2", "gene_name": "Pdik1l", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "G3I3E2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3I3E2" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "G3I3E2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3I3E2" } ] } ] }, { "uniprot_ac": "G3I3Z8", "gene_name": "Rps6kb2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "G3I3Z8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3I3Z8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "G3I3Z8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3I3Z8" } ] } ] }, { "uniprot_ac": "G3I472", "gene_name": "LOC100760228", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "G3I472", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3I472" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "G3I472", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3I472" } ] } ] }, { "uniprot_ac": "G3I5H0", "gene_name": "Cilk1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "G3I5H0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3I5H0" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "G3I5H0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3I5H0" } ] } ] }, { "uniprot_ac": "G3I724", "gene_name": "Vrk3", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "G3I724", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3I724" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "G3I724", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3I724" } ] } ] }, { "uniprot_ac": "G3I7I8", "gene_name": "Chek1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "G3I7I8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3I7I8" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "G3I7I8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3I7I8" } ] } ] }, { "uniprot_ac": "G3I8T5", "gene_name": "Map3k6", "activity": [ { "ec_number": "2.7.11.25", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "G3I8T5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3I8T5" } ] }, { "ec_number": "2.7.11.25", "activity": "", "evidence": [ { "id": "G3I8T5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3I8T5" } ] } ] }, { "uniprot_ac": "G3IB29", "gene_name": "Irak4", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "G3IB29", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3IB29" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "G3IB29", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3IB29" } ] } ] }, { "uniprot_ac": "G3ICC3", "gene_name": "Cdk20", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "G3ICC3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3ICC3" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "G3ICC3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3ICC3" } ] } ] }, { "uniprot_ac": "G3IDN3", "gene_name": "Map3k11", "activity": [ { "ec_number": "2.7.11.25", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "G3IDN3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3IDN3" } ] }, { "ec_number": "2.7.11.25", "activity": "", "evidence": [ { "id": "G3IDN3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3IDN3" } ] } ] }, { "uniprot_ac": "G3IFB6", "gene_name": "Pkmyt1", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "G3IFB6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3IFB6" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "G3IFB6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3IFB6" } ] } ] }, { "uniprot_ac": "G3IGI9", "gene_name": "Slk", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "G3IGI9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3IGI9" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "G3IGI9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3IGI9" } ] } ] }, { "uniprot_ac": "G3IKJ7", "gene_name": "Mark2", "activity": [ { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "G3IKJ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3IKJ7" } ] }, { "ec_number": "2.7.11.26", "activity": "L-seryl-[tau protein] + ATP = O-phospho-L-seryl-[tau protein] + ADP + H(+).", "evidence": [ { "id": "G3IKJ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3IKJ7" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "G3IKJ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3IKJ7" } ] }, { "ec_number": "2.7.11.26", "activity": "", "evidence": [ { "id": "G3IKJ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3IKJ7" } ] } ] }, { "uniprot_ac": "G3IN30", "gene_name": "Plk1", "activity": [ { "ec_number": "2.7.11.21", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "G3IN30", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3IN30" } ] }, { "ec_number": "2.7.11.21", "activity": "", "evidence": [ { "id": "G3IN30", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3IN30" } ] } ] }, { "uniprot_ac": "O55076", "gene_name": "CDK2", "activity": [ { "ec_number": "2.7.11.22", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "O55076", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O55076" } ] }, { "ec_number": "2.7.11.22", "activity": "", "evidence": [ { "id": "O55076", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O55076" } ] } ] }, { "uniprot_ac": "P25321", "gene_name": "PRKACA", "activity": [ { "ec_number": "2.7.11.11", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P25321", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P25321" } ] }, { "ec_number": "2.7.11.11", "activity": "", "evidence": [ { "id": "P25321", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P25321" } ] } ] }, { "uniprot_ac": "P50310", "gene_name": "PGK1", "activity": [ { "ec_number": "2.7.2.3", "activity": "(2R)-3-phosphoglycerate + ATP = (2R)-3-phospho-glyceroyl phosphate + ADP.", "evidence": [ { "id": "P50310", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P50310" } ] }, { "ec_number": "2.7.11.1", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P50310", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P50310" } ] }, { "ec_number": "2.7.2.3", "activity": "", "evidence": [ { "id": "P50310", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P50310" } ] }, { "ec_number": "2.7.11.1", "activity": "", "evidence": [ { "id": "P50310", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P50310" } ] } ] }, { "uniprot_ac": "P68180", "gene_name": "PRKACB", "activity": [ { "ec_number": "2.7.11.11", "activity": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "P68180", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P68180" } ] }, { "ec_number": "2.7.11.11", "activity": "", "evidence": [ { "id": "P68180", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P68180" } ] } ] }, { "uniprot_ac": "Q63980", "gene_name": "MAP2K1", "activity": [ { "ec_number": "2.7.12.2", "activity": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+).", "evidence": [ { "id": "Q63980", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q63980" } ] }, { "ec_number": "2.7.12.2", "activity": "", "evidence": [ { "id": "Q63980", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q63980" } ] } ] } ], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7K953", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K953" }, { "id": "PS50011", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50011" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Protein kinase", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 354, "start_aa": "Met", "end_aa": "Phe", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [ { "ec_number": "2.7.11.22", "ec_name": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+).", "evidence": [ { "id": "2.7.11.22", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/?query=ec:2.7.11.22" }, { "id": "2.7.11.22", "database": "BRENDA Enzymes", "url": "https://www.brenda-enzymes.org/enzyme.php?ecno=2.7.11.22" } ] } ], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 322, "end_pos": 324 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KA99" } ] }, { "name": "Nelfb", "type": "synonym", "evidence": [ { "id": "XP_035293350", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035293350" } ] } ], "protein_names": [ { "name": "Negative elongation factor B isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7KA99", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KA99/entry#names_and_taxonomy" } ] }, { "name": "negative elongation factor B isoform X1", "type": "synonym", "evidence": [ { "id": "XP_035293350", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035293350" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003616080.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035293350", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035293350" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KA99", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KA99" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Nelfb", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KA99", "locus": {} } ], "crossref": [ { "id": "A0A9J7KA99", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KA99", "database": "AlphaFoldDB", "categories": [] }, { "id": "100773760", "url": "https://www.ncbi.nlm.nih.gov/gene/100773760", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR010405", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010405", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100773760", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773760", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KA99", "url": "https://www.orthodb.org/?gene=A0A9J7KA99", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3IG47", "url": "https://www.orthodb.org/?gene=G3IG47", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13503", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13503", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13503:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13503:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06209", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06209", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035293350", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035293350", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H334", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H334", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H334-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H334-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KA99", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KA99", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KA99-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KA99-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3IG47", "url": "https://www.uniprot.org/uniprotkb/G3IG47", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3IG47-1", "url": "https://www.uniprot.org/uniprotkb/G3IG47-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFAGLQDLGVANGEDLKETLTNCTEPLKAIEQFQTENGVLLPSLQSALPFLDLHGTPRLEFHQSVFDELRDKLLERVSAIASEGKAEERYKKLEDLLEKSFSLVKMPSLQPVVMCVMKHLPKVRAVKSALAGEVPEKKLKLVMADKELYRACAVEVKRQIWQDNQALFGDEVSPLLKQYILEKESALFSTELSVLHNFFSPSPKTRRQGEVVQKLTQMVGKNVKLYDMVLQFLRTLFLRTRNVHYCTLRAELLMSLHDLDVSDICTVDPCHKFTWCLDACIRERFVDSKRARELQGFLDGVKKGQEQVLGDLSMILCDPFAINTLSLSTIRHLQELVSQETLPRDSPDLLLLLRLLALGQGAWDLIDSQVFKEPKMEAELITKFLPMLMSFVVDDYTFNVDQKLPAEEKAPVTYPNTLPESFTKFLQEQRMACEVGLYYVLHITKQRNKNALLRLLPGLVETFGDLAFSDIFLHLLTGSLALLADEFALEDFCSSLFDGFFLTASPRKENVHRHVLRLLLHLHPRVAPSKLEALQKALEPTGQSGEAVKELYSQLGEKLEQLDHRKPSPTQAAETPALELPLPNVPAPAPL", "length": 591, "header": "tr|A0A9J7KA99-1|A0A9J7KA99_CRIGR Isoform 1 of Negative elongation factor B isoform X1 OS=Cricetulus griseus OX=10029 GN=Nelfb PE=4 SV=1 CANONICAL=A0A9J7KA99-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H334-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H334/entry", "sequence": { "sequence": "MGCCCPPCSRPCPSWTYTGPRGWNSISQCLMSYATNCWNECQPSPLRERQRRDTTWNVLEEIPLYVLHVETHFLSCANLPRYKKLEDLLEKSFSLVKMPSLQPVVMCVMKHLPKVRAVKSALAGEVPEKKLKLVMADKELYRACAVEVKRQIWQDNQALFGDEVSPLLKQYILEKESALFSTELSVLHNFFSPSPKTRRQGEVVQKLTQMVGKNVKLYDMVLQFLRTLFLRTRNVHYCTLRAELLMSLHDLDVSDICTVDPCHKFTWCLDACIRERFVDSKRARELQGFLDGVKKGQEQVLGDLSMILCDPFAINTLSLSTIRHLQELVSQETLPRDSPDLLLLLRLLALGQGAWDLIDSQVFKEPKMEAELITKFLPMLMSFVVDDYTFNVDQKLPAEEKAPVTYPNTLPESFTKFLQEQRMACEVGLYYVLHITKQRNKNALLRLLPGLVETFGDLAFSDIFLHLLTGSLALLADEFALEDFCSSLFDGFFLTASPRKENVHRHVLRLLLHLHPRVAPSKLEALQKALEPTGQSGEAVKELYSQLGEKLEQLDHRKPSPTQAAETPALELPLPNVPAPAPL", "length": 583, "header": "tr|A0A9J7H334-1|A0A9J7H334_CRIGR Computationally mapped isoform of Negative elongation factor B isoform X2 OS=Cricetulus griseus OX=10029 GN=Nelfb PE=4 SV=1 CANONICAL=A0A9J7KA99-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KA99-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KA99/entry", "sequence": { "sequence": "MFAGLQDLGVANGEDLKETLTNCTEPLKAIEQFQTENGVLLPSLQSALPFLDLHGTPRLEFHQSVFDELRDKLLERVSAIASEGKAEERYKKLEDLLEKSFSLVKMPSLQPVVMCVMKHLPKVRAVKSALAGEVPEKKLKLVMADKELYRACAVEVKRQIWQDNQALFGDEVSPLLKQYILEKESALFSTELSVLHNFFSPSPKTRRQGEVVQKLTQMVGKNVKLYDMVLQFLRTLFLRTRNVHYCTLRAELLMSLHDLDVSDICTVDPCHKFTWCLDACIRERFVDSKRARELQGFLDGVKKGQEQVLGDLSMILCDPFAINTLSLSTIRHLQELVSQETLPRDSPDLLLLLRLLALGQGAWDLIDSQVFKEPKMEAELITKFLPMLMSFVVDDYTFNVDQKLPAEEKAPVTYPNTLPESFTKFLQEQRMACEVGLYYVLHITKQRNKNALLRLLPGLVETFGDLAFSDIFLHLLTGSLALLADEFALEDFCSSLFDGFFLTASPRKENVHRHVLRLLLHLHPRVAPSKLEALQKALEPTGQSGEAVKELYSQLGEKLEQLDHRKPSPTQAAETPALELPLPNVPAPAPL", "length": 591, "header": "tr|A0A9J7KA99-1|A0A9J7KA99_CRIGR Isoform 1 of Negative elongation factor B isoform X1 OS=Cricetulus griseus OX=10029 GN=Nelfb PE=4 SV=1 CANONICAL=A0A9J7KA99-1" }, "locus": {} }, { "isoform_ac": "G3IG47-1", "url": "https://www.uniprot.org/uniprotkb/G3IG47/entry", "sequence": { "sequence": "MFAGLQDLGVANGEDLKETLTNCTEPLKAIEQFQTENGVLLPSLQSALPFLDLHGTPRLEFHQSVFDELRDKLLERVSAIASEGKAEERYKKLEDLLEKSFSLVKMPSLQPVVMCVMKHLPKVPEKKLKLVMADKELYRACAVEVKRQIWQDNQALFGDEVSPLLKQYILEKESALFSTELSVLHNFFSPSPKTRRQGEVVQKLTQMVGKNVKLYDMVLQFLRTLFLRTRNVHYCTLRAELLMSLHDLDVSDICTVDPCHKFTWCLDACIRERFVDSKRARELQGFLDGVKKGQEQVLGDLSMILCDPFAINTLSLSTIRHLQELVSQETLPRDSPDLLLLLRLLALGQGAWDLIDSQVFKEPKMEAELITKFLPMLMSFVVDDYTFNVDQKLPAEEKAPVTYPNTLPESFTKFLQEQRMACEVGLYYVLHITKQRNKNALLRLLPGLVETFGDLAFSDIFLHLLTGSLALLADEFALEDFCSSLFDGFFLTASPRKENVHRHVLRLLLHLHPRVAPSKLEALQKALEPTGQSGEAVKELYSQLGEKLEQLDHRKPSPTQAAETPALELPLPNVPAPAPL", "length": 580, "header": "tr|G3IG47-1|A0A9J7KA99_CRIGR Computationally mapped isoform of Negative elongation factor B isoform X1 OS=Cricetulus griseus OX=10029 GN=Nelfb PE=4 SV=1 CANONICAL=A0A9J7KA99-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 570, "start_aa": "Thr", "end_pos": 570, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr570", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3IG47", "url": "https://www.uniprot.org/uniprotkb/G3IG47" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3IG47", "url": "https://www.uniprot.org/uniprotkb/G3IG47" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100773760", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773760", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "translation elongation factor activity", "id": "GO:0003746", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003746", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KA99", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KA99" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "negative regulation of transcription elongation by RNA polymerase II", "id": 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Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308117", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308117" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KEX4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEX4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Aftph", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEX4", "locus": {} } ], "crossref": [ { "id": "A0A9J7KEX4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KEX4", "database": "AlphaFoldDB", "categories": [] }, { "id": "100754955", "url": "https://www.ncbi.nlm.nih.gov/gene/100754955", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029205", 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"tr|A0A9J7KEX4-1|A0A9J7KEX4_CRIGR Isoform 1 of Aftiphilin isoform X2 OS=Cricetulus griseus OX=10029 GN=Aftph PE=4 SV=1 CANONICAL=A0A9J7KEX4-1" }, "locus": {} }, { "isoform_ac": "G3H128-1", "url": "https://www.uniprot.org/uniprotkb/G3H128/entry", "sequence": { "sequence": 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Aftiphilin isoform X2 OS=Cricetulus griseus OX=10029 GN=Aftph PE=4 SV=1 CANONICAL=A0A9J7KEX4-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 564, "start_aa": "Thr", "end_pos": 564, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr564", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H128", "url": "https://www.uniprot.org/uniprotkb/G3H128" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754955", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754955", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "trans-Golgi network membrane", "id": "GO:0032588", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032588", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KEX4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEX4" } ], "pmid": "" }, { "name": "AP-1 adaptor complex", "id": "GO:0030121", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030121", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KEX4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEX4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "clathrin binding", "id": "GO:0030276", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030276", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KEX4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEX4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 201, "end_pos": 203, "annotation": "n_glycosylation_sequon" }, { "start_pos": 679, "end_pos": 681, "annotation": "n_glycosylation_sequon" }, { "start_pos": 70, "end_pos": 72, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7KEX4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEX4" }, { "id": "PF15045", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15045" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Aftiphilin clathrin-binding box", "eco_id": "ECO_0000259", "start_pos": 697, "end_pos": 765, "start_aa": "Asp", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 564 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 201, "end_pos": 203 }, { "start_pos": 679, "end_pos": 681 }, { "start_pos": 70, "end_pos": 72 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8C2LBF1-1", "uniprot_ac": "A0A8C2LBF1", "uniprot_id": "A0A8C2LBF1_CRIGR", "mass": { "chemical_mass": 59195.0, "monoisotopic_mass": 59195.0 }, "refseq": { "ac": "XP_027281258", "name": "brain-specific angiogenesis inhibitor 1-associated protein 2 isoform X5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281258" }, "gene_names": [ { "name": "Baiap2", "type": "recommended", "evidence": [ { "id": "A0A8C2LBF1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LBF1" } ] }, { "name": "Baiap2", "type": "synonym", "evidence": [ { "id": "XP_027281258", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281258" } ] } ], "protein_names": [ { "name": "BAR/IMD domain-containing adapter protein 2", "type": "recommended", "evidence": [ { "id": "A0A8C2LBF1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LBF1/entry#names_and_taxonomy" } ] }, { "name": "Brain-specific angiogenesis inhibitor 1-associated protein 2", "type": "synonym", "evidence": [ { "id": "A0A8C2LBF1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LBF1/entry#names_and_taxonomy" } ] }, { "name": "Insulin receptor substrate protein of 53 kDa", "type": "synonym", "evidence": [ { "id": "A0A8C2LBF1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LBF1/entry#names_and_taxonomy" } ] }, { "name": "brain-specific angiogenesis inhibitor 1-associated protein 2 isoform X5", "type": "synonym", "evidence": [ { "id": "XP_027281258", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281258" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027281258", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281258" } ] }, { "annotation": "Adapter protein that links membrane-bound small G-proteins to cytoplasmic effector proteins. Necessary for CDC42-mediated reorganization of the actin cytoskeleton and for RAC1-mediated membrane ruffling. Involved in the regulation of the actin cytoskeleton by WASF family members and the Arp2/3 complex. Plays a role in neurite growth. Acts syngeristically with ENAH to promote filipodia formation. Plays a role in the reorganization of the actin cytoskeleton in response to bacterial infection. Participates in actin bundling when associated with EPS8, promoting filopodial protrusions.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBM1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBM1#function" }, { "database": "UniProtKB", "id": "ARBA00025545", "url": "https://www.uniprot.org/uniprotkb/ARBA00025545#function" }, { "database": "UniProtKB", "id": "A0A9J7GDF9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDF9#function" }, { "database": "UniProtKB", "id": "A0A9J7GG56", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GG56#function" }, { "database": "UniProtKB", "id": "A0A8C2LBF1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LBF1#function" }, { "database": "UniProtKB", "id": "A0A8C2LDF0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LDF0#function" }, { "database": "UniProtKB", "id": "A0A9J7JUJ6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUJ6#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LBF1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LBF1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Baiap2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LBF1", "locus": {} } ], "crossref": [ { "id": "cd07646", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07646", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd11915", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11915", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100761815", "url": "https://www.ncbi.nlm.nih.gov/gene/100761815", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013606", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013606", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027267", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027267", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027681", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027681", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030128", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030128", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035594", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035594", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036028", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036028", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100761815", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761815", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2LBF1", "url": "https://www.orthodb.org/?gene=A0A8C2LBF1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14206", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14206", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14206:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14206:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07653", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07653", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08397", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08397", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027281258", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281258", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LBF1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LBF1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LBF1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LBF1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LDF0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LDF0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LDF0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LDF0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GBM1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBM1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GBM1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBM1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GDF9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDF9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GDF9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDF9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GG56", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GG56", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GG56-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GG56-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JUJ6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUJ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JUJ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUJ6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSLSRSEEMHRLTENVYKTIMEQFNPSLRNFIAMGKNYEKALAGVTFAAKGYFDALVKMGELASESQGSKELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVELDSRYLSAALKKYQAEQRSKGDALDKCQAELKKLRKKSQGSKNPQKYSDKELQYIDAISNKQGELENYVSDGYKTALTEERRRFCFLVEKQCAVAKNSAAYHSKGKELLAQKLPVWQQACADPNKIPDRAVQLMQQIASSNGSILPSTLSASKSNLVISDPIPGAKPLPVPPELAPFVGRMSAQENVPVMNGVAGPDSEDYNPWADRKAAQPKSLSPPQSQSKLSDSYSNTLPVRKSVTPKNSYATTENKTLPRSSSMAAGLERNGRMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRVLDSDGSDRLHMSLQQGKSSSTGNLLDKDDLAVPPPDYGTSSRAFPTQTAGTFKQRPYSVAVPAFSQGLDDYGARSVSRNPFADVHLKPTVTNDRSAPLLS", "length": 535, "header": "tr|A0A8C2LBF1-1|A0A8C2LBF1_CRIGR Isoform 1 of BAR/IMD domain-containing adapter protein 2 OS=Cricetulus griseus OX=10029 GN=Baiap2 PE=4 SV=1 CANONICAL=A0A8C2LBF1-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LBF1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LBF1/entry", "sequence": { "sequence": "MSLSRSEEMHRLTENVYKTIMEQFNPSLRNFIAMGKNYEKALAGVTFAAKGYFDALVKMGELASESQGSKELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVELDSRYLSAALKKYQAEQRSKGDALDKCQAELKKLRKKSQGSKNPQKYSDKELQYIDAISNKQGELENYVSDGYKTALTEERRRFCFLVEKQCAVAKNSAAYHSKGKELLAQKLPVWQQACADPNKIPDRAVQLMQQIASSNGSILPSTLSASKSNLVISDPIPGAKPLPVPPELAPFVGRMSAQENVPVMNGVAGPDSEDYNPWADRKAAQPKSLSPPQSQSKLSDSYSNTLPVRKSVTPKNSYATTENKTLPRSSSMAAGLERNGRMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRVLDSDGSDRLHMSLQQGKSSSTGNLLDKDDLAVPPPDYGTSSRAFPTQTAGTFKQRPYSVAVPAFSQGLDDYGARSVSRNPFADVHLKPTVTNDRSAPLLS", "length": 535, "header": "tr|A0A8C2LBF1-1|A0A8C2LBF1_CRIGR Isoform 1 of BAR/IMD domain-containing adapter protein 2 OS=Cricetulus griseus OX=10029 GN=Baiap2 PE=4 SV=1 CANONICAL=A0A8C2LBF1-1" }, "locus": {} }, { "isoform_ac": "A0A8C2LDF0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LDF0/entry", "sequence": { "sequence": "MSLSRSEEMHRLTENVYKTIMEQFNPSLRNFIAMGKNYEKALAGVTFAAKGYFDALVKMGELASESQGSKELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVELDSRYLSAALKKYQAEQRSKGDALDKCQAELKKLRKKSQGSKNPQKYSDKELQYIDAISNKQGELENYVSDGYKTALTEERRRFCFLVEKQCAVAKNSAAYHSKGKELLAQKLPVWQQACADPNKIPDRAVQLMQQIASSNGSILPSTLSASKSNLVISDPIPGAKPLPVPPELAPFVGRMSAQENVPVMNGVAGPDSEDYNPWADRKAAQPKSLSPPQSQSKLSDSYSNTLPVRKSVTPKNSYATTENKTLPRSSSMAAGLERNGRMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRVLDSDGSDRLHMSLQQGKSSSTGNLLDKDDLAVPPPDYGTSSRAFPTQTAGTFKQRPYSVAVPAFSQGLDDYGARSVSSGSGTLVSTV", "length": 522, "header": "tr|A0A8C2LDF0-1|A0A8C2LDF0_CRIGR Computationally mapped isoform of BAR/IMD domain-containing adapter protein 2 OS=Cricetulus griseus OX=10029 GN=Baiap2 PE=4 SV=1 CANONICAL=A0A8C2LBF1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GBM1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBM1/entry", "sequence": { "sequence": "MSLSRSEEMHRLTENVYKTIMEQFNPSLRNFIAMGKNYEKALAGVTFAAKGYFDALVKMGELASESQGSKELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVELDSRYLSAALKKYQAEQRSKGDALDKCQAELKKLRKKSQGSKNPQKYSDKELQYIDAISNKQGELENYVSDGYKTALTEERRRFCFLVEKQCAVAKNSAAYHSKGKELLAQKLPVWQQACADPNKIPDRAVQLMQQIASSNGSILPSTLSASKSNLVISDPIPGAKPLPVPPELAPFVGSQSKLSDSYSNTLPVRKSVTPKNSYATTENKTLPRSSSMAAGLERNGRMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRVLDSDGSDRLHMSLQQGKSSSTGNLLDKDDLAVPPPDYGTSSRAFPTQTAGTFKQRPYSVAVPAFSQGLDDYGARSVSSGSGTLVSTV", "length": 482, "header": "tr|A0A9J7GBM1-1|A0A8C2LBF1_CRIGR Computationally mapped isoform of BAR/IMD domain-containing adapter protein 2 OS=Cricetulus griseus OX=10029 GN=Baiap2 PE=4 SV=1 CANONICAL=A0A8C2LBF1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GDF9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDF9/entry", "sequence": { "sequence": "MSLSRSEEMHRLTENVYKTIMEQFNPSLRNFIAMGKNYEKALAGVTFAAKGYFDALVKMGELASESQGSKELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVELDSRYLSAALKKYQAEQRSKGDALDKCQAELKKLRKKSQGSKNPQKYSDKELQYIDAISNKQGELENYVSDGYKTALTEERRRFCFLVEKQCAVAKNSAAYHSKGKELLAQKLPVWQQACADPNKIPDRAVQLMQQIASSNGSILPSTLSASKSNLVISDPIPGAKPLPVPPELAPFVGRMSAQENVPVMNGVAGPDSEDYNPWADRKAAQPKSLSPPQSQSKLSDSYSNTLPVRKSVTPKNSYATTENKTLPRSSSMAAGLERNGRMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRVLDSDGSDRLHMSLQQGKSSSTGNLLDKDDLAVPPPDYGTSSRAFPTQTAGTFKQRPYSVAVPAFSQGLDDYGARSVSSADVEVARF", "length": 521, "header": "tr|A0A9J7GDF9-1|A0A8C2LBF1_CRIGR Computationally mapped isoform of BAR/IMD domain-containing adapter protein 2 OS=Cricetulus griseus OX=10029 GN=Baiap2 PE=4 SV=1 CANONICAL=A0A8C2LBF1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GG56-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GG56/entry", "sequence": { "sequence": "MSLSRSEEMHRLTENVYKTIMEQFNPSLRNFIAMGKNYEKALAGVTFAAKGYFDALVKMGELASESQGSKELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVELDSRYLSAALKKYQAEQRSKGDALDKCQAELKKLRKKSQGSKNPQKYSDKELQYIDAISNKQGELENYVSDGYKTALTEERRRFCFLVEKQCAVAKNSAAYHSKGKELLAQKLPVWQQACADPNKIPDRAVQLMQQIASSNGSILPSTLSASKSNLVISDPIPGAKPLPVPPELAPFVGSQSKLSDSYSNTLPVRKSVTPKNSYATTENKTLPRSSSMAAGLERNGRMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRVLDSDGSDRLHMSLQQGKSSSTGNLLDKDDLAVPPPDYGTSSRAFPTQTAGTFKQRPYSVAVPAFSQGLDDYGARSVSRNPFADVHLKPTVTNDRSAPLLS", "length": 495, "header": "tr|A0A9J7GG56-1|A0A8C2LBF1_CRIGR Computationally mapped isoform of BAR/IMD domain-containing adapter protein 2 OS=Cricetulus griseus OX=10029 GN=Baiap2 PE=4 SV=1 CANONICAL=A0A8C2LBF1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JUJ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUJ6/entry", "sequence": { "sequence": 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], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7KA33-1", "uniprot_ac": "A0A9J7KA33", "uniprot_id": "A0A9J7KA33_CRIGR", "mass": { "chemical_mass": 53842.0, "monoisotopic_mass": 53842.0 }, "refseq": { "ac": "XP_027239655", "name": "F-box/WD repeat-containing protein 2 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027239655" }, "gene_names": [ { "name": "LOC100756088", "type": "recommended", "evidence": [ { "id": "A0A9J7KA33", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KA33" } ] }, { "name": "LOC100756088", "type": "synonym", "evidence": [ { "id": "XP_027239655", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027239655" } ] } ], "protein_names": [ { "name": "F-box/WD repeat-containing protein 2 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027239655", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027239655" } ] }, { "name": "F-box/WD repeat-containing protein 2 isoform X4", "type": "synonym", "evidence": [ { "id": "A0A9J7KA33", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KA33/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 697 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003615108.1) and transcript sequence (IACG01088590.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027239655.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027239655", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027239655" } ] }, { "annotation": "Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GB14", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB14#function" }, { "database": "UniProtKB", "id": "ARBA00003437", "url": "https://www.uniprot.org/uniprotkb/ARBA00003437#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KA33", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KA33" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100756088", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KA33", "locus": {} } ], "crossref": [ { "id": "cd22131", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22131", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100756088", "url": "https://www.ncbi.nlm.nih.gov/gene/100756088", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020472", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020472", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042627", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042627", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100756088", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756088", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GDM8", "url": "https://www.orthodb.org/?gene=A0A9J7GDM8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7KA33", "url": "https://www.orthodb.org/?gene=A0A9J7KA33", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR44436", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44436", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR44436:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44436:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12937", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12937", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027239655", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027239655", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GB14", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB14", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GB14-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB14-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GB19", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB19", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GB19-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB19-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GDM8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDM8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GDM8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDM8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K8P5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8P5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K8P5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8P5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KA33", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KA33", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KA33-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KA33-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MERKDFETWLDNISVTFLSLTDLQKNETLDHLISLSGAVQLRHLSNNLETLLKRDFLKLLPLELSFYLLKWLDPQTLLTCCLVSKQWNKVISACTEVWQTACKNLGWQIDDSVQDALHWKKVYLKAILRMKQLEDHEAFETSSLIGHSARVYALYYRDGLLCTGSDDLSAKLWDVSTGQCVYGIQTHTCAAVKFDEQKLVTGSFDNTVACWEWSSGARTQHFRGHTGAVFSVDYSDELDILVSGSADFAVKVWALSAGTCLNTLTGHTEWVTKVVLQKCKVKSLLHSPGDYILLSADKYEIKIWPIGREINCKCLKTLSVSEDRSICLQPRLHFDGKYIVCSSALGLYQWDFASYDILRSTSVYSKVVFCFMIRNSLPCRVIKTPEVANLALLGFGDVFALLFDNHYLYIMDLRTESVISRWPLPEYRKSKRGSSFLAGEASWLNGLDGHNDTGLVFATSMPDHSIHLVLWKEHG", "length": 475, "header": "tr|A0A9J7KA33-1|A0A9J7KA33_CRIGR Isoform 1 of F-box/WD repeat-containing protein 2 isoform X4 OS=Cricetulus griseus OX=10029 GN=LOC100756088 PE=4 SV=1 CANONICAL=A0A9J7KA33-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GB14-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB14/entry", "sequence": { "sequence": "MERKDFETWLDNISVTFLSLTDLQKNETLDHLISLSGAVQLRHLSNNLETLLKRDFLKLLPLELSFYLLKWLDPQTLLTCCLVSKQWNKVISACTEVWQTACKNLGWQIDDSVQDALHWKKVYLKAILRMKQLEDHEAFETSSLIGHSARVYALYYRDGLLCTGSDDLSAKLWDVSTGQCVYGIQTHTCAAVKFDEQKLVTGSFDNTVACWEWSSGARTQHFRGHTGAVFSVDYSDELDILVSGSADFAVKVWALSAGTCLNTLTGHTEWVTKVVLQKCKVKSLLHSPGDYILLSADKYEIKIWPIGREINCKCLKTLSVSEDRSICLQPRLHFDGKYIVCSSALGLYQWDFASYDILRVIKTPEVANLALLGFGDVFALLFDNHYLYIMDLRTESVISRWPLPEYRKSKRGSSFLAGEASWLNGLDGHNDTGLVFATSMPDHSIHLVLWKEHG", "length": 454, "header": "tr|A0A9J7GB14-1|A0A9J7KA33_CRIGR Computationally mapped isoform of F-box/WD repeat-containing protein 2 isoform X4 OS=Cricetulus griseus OX=10029 GN=LOC100756088 PE=4 SV=1 CANONICAL=A0A9J7KA33-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GB19-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB19/entry", "sequence": { "sequence": "MERKDFETWLDNISVTFLSLTDLQKNETLDHLISLSGAVQLRHLSNNLETLLKRDFLKLLPLELSFYLLKWLDPQTLLTCCLVSKQWNKVISACTEVWQTACKNLGWQIDDSVQDALHWKKVYLKAILRMKQLEDHEAFETSSLIGHSARVYALYYRDGLLCTVFSVDYSDELDILVSGSADFAVKVWALSAGTCLNTLTGHTEWVTKVVLQKCKVKSLLHSPGDYILLSADKYEIKIWPIGREINCKCLKTLSVSEDRSICLQPRLHFDGKYIVCSSALGLYQWDFASYDILRVIKTPEVANLALLGFGDVFALLFDNHYLYIMDLRTESVISRWPLPEYRKSKRGSSFLAGEASWLNGLDGHNDTGLVFATSMPDHSIHLVLWKEHG", "length": 389, "header": "tr|A0A9J7GB19-1|A0A9J7KA33_CRIGR Computationally mapped isoform of F-box/WD repeat-containing protein 2 isoform X4 OS=Cricetulus griseus OX=10029 GN=LOC100756088 PE=4 SV=1 CANONICAL=A0A9J7KA33-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GDM8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GDM8/entry", "sequence": { "sequence": "MERKDFETWLDNISVTFLSLTDLQKNETLDHLISLSGAVQLRHLSNNLETLLKRDFLKLLPLELSFYLLKWLDPQTLLTCCLVSKQWNKVISACTEVWQTACKNLGWQIDDSVQDALHWKKVYLKAILRMKQLEDHEAFETSSLIGHSARVYALYYRDGLLCTGSDDLSAKLWDVSTGQCVYGIQTHTCAAVKFDEQKLVTGSFDNTVACWEWSSGARTQHFRGHTGAELKTLGQKVVHGLYLHRIVLGC", "length": 250, "header": "tr|A0A9J7GDM8-1|A0A9J7KA33_CRIGR Computationally mapped isoform of F-box/WD repeat-containing protein 2 isoform X4 OS=Cricetulus griseus OX=10029 GN=LOC100756088 PE=4 SV=1 CANONICAL=A0A9J7KA33-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K8P5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8P5/entry", "sequence": { "sequence": "MERKDFETWLDNISVTFLSLTDLQKNETLDHLISLSGAVQLRHLSNNLETLLKRDFLKLLPLELSFYLLKWLDPQTLLTCCLVSKQWNKVISACTEVWQTACKNLGWQIDDSVQDALHWKKVYLKAILRMKQLEDHEAFETSSLIGHSARVYALYYRDGLLCTVFSVDYSDELDILVSGSADFAVKVWALSAGTCLNTLTGHTEWVTKVVLQKCKVKSLLHSPGDYILLSADKYEIKIWPIGREINCKCLKTLSVSEDRSICLQPRLHFDGKYIVCSSALGLYQWDFASYDILRSTSVYSKVVFCFMIRNSLPCRVIKTPEVANLALLGFGDVFALLFDNHYLYIMDLRTESVISRWPLPEYRKSKRGSSFLAGEASWLNGLDGHNDTGLVFATSMPDHSIHLVLWKEHG", "length": 410, "header": "tr|A0A9J7K8P5-1|A0A9J7K8P5_CRIGR Computationally mapped isoform of F-box/WD repeat-containing protein 2 isoform X6 OS=Cricetulus griseus OX=10029 GN=LOC100756088 PE=4 SV=1 CANONICAL=A0A9J7KA33-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KA33-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KA33/entry", "sequence": { "sequence": "MERKDFETWLDNISVTFLSLTDLQKNETLDHLISLSGAVQLRHLSNNLETLLKRDFLKLLPLELSFYLLKWLDPQTLLTCCLVSKQWNKVISACTEVWQTACKNLGWQIDDSVQDALHWKKVYLKAILRMKQLEDHEAFETSSLIGHSARVYALYYRDGLLCTGSDDLSAKLWDVSTGQCVYGIQTHTCAAVKFDEQKLVTGSFDNTVACWEWSSGARTQHFRGHTGAVFSVDYSDELDILVSGSADFAVKVWALSAGTCLNTLTGHTEWVTKVVLQKCKVKSLLHSPGDYILLSADKYEIKIWPIGREINCKCLKTLSVSEDRSICLQPRLHFDGKYIVCSSALGLYQWDFASYDILRSTSVYSKVVFCFMIRNSLPCRVIKTPEVANLALLGFGDVFALLFDNHYLYIMDLRTESVISRWPLPEYRKSKRGSSFLAGEASWLNGLDGHNDTGLVFATSMPDHSIHLVLWKEHG", "length": 475, "header": "tr|A0A9J7KA33-1|A0A9J7KA33_CRIGR Isoform 1 of F-box/WD repeat-containing protein 2 isoform X4 OS=Cricetulus griseus OX=10029 GN=LOC100756088 PE=4 SV=1 CANONICAL=A0A9J7KA33-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GB14", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB14" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GB14", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GB14" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100756088", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756088", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 12, "end_pos": 14, "annotation": "n_glycosylation_sequon" }, { "start_pos": 26, "end_pos": 28, "annotation": "n_glycosylation_sequon" }, { "start_pos": 451, "end_pos": 453, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7KA33", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KA33" }, { "id": "PS50181", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50181" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F-box", "eco_id": "ECO_0000259", "start_pos": 54, "end_pos": 101, "start_aa": "Arg", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 12, "end_pos": 14 }, { "start_pos": 26, "end_pos": 28 }, { "start_pos": 451, "end_pos": 453 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7K9V5-1", "uniprot_ac": "A0A9J7K9V5", "uniprot_id": "A0A9J7K9V5_CRIGR", "mass": { "chemical_mass": 18449.0, "monoisotopic_mass": 18449.0 }, "refseq": { "ac": "XP_035305707", "name": "protein PBDC1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305707" }, "gene_names": [ { "name": "Pbdc1", "type": "recommended", "evidence": [ { "id": "A0A9J7K9V5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9V5" } ] }, { "name": "Pbdc1", "type": "synonym", "evidence": [ { "id": "XP_035305707", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305707" } ] } ], "protein_names": [ { "name": "Protein PBDC1 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7K9V5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9V5/entry#names_and_taxonomy" } ] }, { "name": "protein PBDC1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035305707", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305707" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. 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"recommended", "evidence": [ { "id": "A0A9J7KDS9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDS9/entry#names_and_taxonomy" } ] }, { "name": "differentially expressed in FDCP 6 homolog isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035306379", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306379" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035306379", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306379" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KDS9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDS9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Def6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDS9", "locus": {} } ], "crossref": [ { "id": "A0A9J7KDS9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KDS9", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd13273", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13273", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100757712", "url": "https://www.ncbi.nlm.nih.gov/gene/100757712", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057836", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057836", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057837", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057837", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100757712", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757712", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KDS9", "url": "https://www.orthodb.org/?gene=A0A9J7KDS9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14383", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14383", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14383:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14383:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00169", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00169", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25530", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25530", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035306379", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306379", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A3L7IN31", "url": "https://www.uniprot.org/uniprotkb/A0A3L7IN31", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A3L7IN31-1", "url": "https://www.uniprot.org/uniprotkb/A0A3L7IN31-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H9L1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9L1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H9L1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9L1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HAF9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAF9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HAF9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAF9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KDS9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDS9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KDS9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDS9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALRKELLKSIWYAFTALDVEKSGKVSKSQLKVLSHNLYTVLHIPHDPVALEEHFRDDDDGPVSSQGYMPYLNKYILDKASWQVEEGAFVKEHFDELCWTLTAKKNYPADSNGNSLLSNQDAFRLWCLFNFLSEDKYPLIMVPDEVEYLLKKLLGSMSLEMGLGELEELMAQEAQTAQTSGGLSVWQFLELFNSGRCLRGVGRESLSMAIQEVYQELIQDVLKQGYLWKRGHLRRNWAERWFQLQPSCLCYFGSEECKEKRGTILLDAQCCVEVLQDREGKRCVFCVKTASRTYEMSASDTRQRQEWTAAIQTAIRLQAEGKTSLHKDLKQKRREQREQRERRRAAKEEELLRLQQLQEEKERKLQELELLQEAQRQAERLLQEEEERRRSQHRELQQALEGQLREAEQARASMQAEMELKKEEAARQRQRIAELEEMQERLQEALQLEVKARRDEEAVRLAQTRLLEEEEDKLRQLMHLKEEQERYIERAQQEKQELQQEMALQSRSLQHAQLQLEEVRQHRQRADEDVEAAQRKLRQASTNVKHWNVQMNRLMHPIEPGDKRPTTSSSFTGFQPSPLARRDSSLKRLTHWGSQGSRTLAANSSERKSLNGGDETPILASASQEDKLDPAPEN", "length": 634, "header": "tr|A0A9J7KDS9-1|A0A9J7KDS9_CRIGR Isoform 1 of IRF4-binding protein OS=Cricetulus griseus OX=10029 GN=Def6 PE=4 SV=1 CANONICAL=A0A9J7KDS9-1" }, "isoforms": [ { "isoform_ac": "A0A3L7IN31-1", "url": "https://www.uniprot.org/uniprotkb/A0A3L7IN31/entry", "sequence": { "sequence": "MALRKELLKSIWYAFTALDVEKSGKVSKSQLKVLSHNLYTVLHIPHDPVALEEHFRDDDDGPVSSQGYMPYLNKYILDKVEEGAFVKEHFDELCWTLTAKKNYPADSNGNSLLSNQDAFRLWCLFNFLSEDKYPLIMVPDEVEYLLKKLLGSMSLEMGLGELEELMAQEAQTAQTSGGLSVWQFLELFNSGRCLRGVGRESLSMAIQEVYQELIQDVLKQGYLWKRGHLRRNWAERWFQLQPSCLCYFGSEECKEKRGTILLDAQCCVEVLQDREGKRCVFCVKTASRTYEMSASDTRQRQEWTAAIQTAIRLQAEGKTSLHKDLKQKRREQREQRERRRAAKEEELLRLQQLQEEKERKLQELELLQEAQRQAERLLQEEEERRRSQHRELQQALEGQLREAEQARASMQAEMELKKEEAARQRQRIAELEEMQERLQEALQLEVKARRDEEAVRLAQTRLLEEEEDKLRQLMHLKEEQERYIERAQQEKQELQQEMALQSRSLQHAQLQLEEVRQHRQRADEDVEAAQRKLRQASTNVKHWNVQMNRLMHPIEPGDKRPTTSSSFTGFQPSPLARRDSSLKRLTHWGSQGSRTLAANSSERKSLNGGDETPILASASQEDKLDPAPEN", "length": 630, "header": "tr|A0A3L7IN31-1|A0A9J7KDS9_CRIGR Computationally mapped isoform of IRF4-binding protein OS=Cricetulus griseus OX=10029 GN=Def6 PE=4 SV=1 CANONICAL=A0A9J7KDS9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H9L1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9L1/entry", "sequence": { "sequence": "MALRKELLKSIWYAFTALDVEKSGKVSKSQLKVEEGAFVKEHFDELCWTLTAKKNYPADSNGNSLLSNQDAFRLWCLFNFLSEDKYPLIMVPDEVEYLLKKLLGSMSLEMGLGELEELMAQEAQTAQTSGGLSVWQFLELFNSGRCLRGVGRESLSMAIQEVYQELIQDVLKQGYLWKRGHLRRNWAERWFQLQPSCLCYFGSEECKEKRGTILLDAQCCVEVLQDREGKRCVFCVKTASRTYEMSASDTRQRQEWTAAIQTAIRLQAEGKTSLHKDLKQKRREQREQRERRRAAKEEELLRLQQLQEEKERKLQELELLQEAQRQAERLLQEEEERRRSQHRELQQALEGQLREAEQARASMQAEMELKKEEAARQRQRIAELEEMQERLQEALQLEVKARRDEEAVRLAQTRLLEEEEDKLRQLMHLKEEQERYIERAQQEKQELQQEMALQSRSLQHAQLQLEEVRQHRQRADEDVEAAQRKLRQASTNVKHWNVQMNRLMHPIEPGDKRPTTSSSFTGFQPSPLARRDSSLKRLTHWGSQGSRTLAANSSERKSLNGGDETPILASASQEDKLDPAPEN", "length": 583, "header": "tr|A0A9J7H9L1-1|A0A9J7H9L1_CRIGR Computationally mapped isoform of IRF4-binding protein OS=Cricetulus griseus OX=10029 GN=Def6 PE=4 SV=1 CANONICAL=A0A9J7KDS9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HAF9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAF9/entry", "sequence": { "sequence": "MALRKELLKSIWYAFTALDVEKSGKVSKSQLKASWQVEEGAFVKEHFDELCWTLTAKKNYPADSNGNSLLSNQDAFRLWCLFNFLSEDKYPLIMVPDEVEYLLKKLLGSMSLEMGLGELEELMAQEAQTAQTSGGLSVWQFLELFNSGRCLRGVGRESLSMAIQEVYQELIQDVLKQGYLWKRGHLRRNWAERWFQLQPSCLCYFGSEECKEKRGTILLDAQCCVEVLQDREGKRCVFCVKTASRTYEMSASDTRQRQEWTAAIQTAIRLQAEGKTSLHKDLKQKRREQREQRERRRAAKEEELLRLQQLQEEKERKLQELELLQEAQRQAERLLQEEEERRRSQHRELQQALEGQLREAEQARASMQAEMELKKEEAARQRQRIAELEEMQERLQEALQLEVKARRDEEAVRLAQTRLLEEEEDKLRQLMHLKEEQERYIERAQQEKQELQQEMALQSRSLQHAQLQLEEVRQHRQRADEDVEAAQRKLRQASTNVKHWNVQMNRLMHPIEPGDKRPTTSSSFTGFQPSPLARRDSSLKRLTHWGSQGSRTLAANSSERKSLNGGDETPILASASQEDKLDPAPEN", "length": 587, "header": "tr|A0A9J7HAF9-1|A0A9J7HAF9_CRIGR Computationally mapped isoform of IRF4-binding protein OS=Cricetulus griseus OX=10029 GN=Def6 PE=4 SV=1 CANONICAL=A0A9J7KDS9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KDS9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDS9/entry", "sequence": { "sequence": "MALRKELLKSIWYAFTALDVEKSGKVSKSQLKVLSHNLYTVLHIPHDPVALEEHFRDDDDGPVSSQGYMPYLNKYILDKASWQVEEGAFVKEHFDELCWTLTAKKNYPADSNGNSLLSNQDAFRLWCLFNFLSEDKYPLIMVPDEVEYLLKKLLGSMSLEMGLGELEELMAQEAQTAQTSGGLSVWQFLELFNSGRCLRGVGRESLSMAIQEVYQELIQDVLKQGYLWKRGHLRRNWAERWFQLQPSCLCYFGSEECKEKRGTILLDAQCCVEVLQDREGKRCVFCVKTASRTYEMSASDTRQRQEWTAAIQTAIRLQAEGKTSLHKDLKQKRREQREQRERRRAAKEEELLRLQQLQEEKERKLQELELLQEAQRQAERLLQEEEERRRSQHRELQQALEGQLREAEQARASMQAEMELKKEEAARQRQRIAELEEMQERLQEALQLEVKARRDEEAVRLAQTRLLEEEEDKLRQLMHLKEEQERYIERAQQEKQELQQEMALQSRSLQHAQLQLEEVRQHRQRADEDVEAAQRKLRQASTNVKHWNVQMNRLMHPIEPGDKRPTTSSSFTGFQPSPLARRDSSLKRLTHWGSQGSRTLAANSSERKSLNGGDETPILASASQEDKLDPAPEN", "length": 634, "header": "tr|A0A9J7KDS9-1|A0A9J7KDS9_CRIGR Isoform 1 of IRF4-binding protein OS=Cricetulus griseus OX=10029 GN=Def6 PE=4 SV=1 CANONICAL=A0A9J7KDS9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A3L7IN31", "url": "https://www.uniprot.org/uniprotkb/A0A3L7IN31" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A3L7IN31", "url": "https://www.uniprot.org/uniprotkb/A0A3L7IN31" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100757712", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757712", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KDS9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDS9" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KDS9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDS9" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KDS9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDS9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "vesicle-mediated transport to the plasma membrane", "id": "GO:0098876", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098876", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KDS9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDS9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 603, "end_pos": 605, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7KDS9", "database": 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}, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { 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Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308822", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308822" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KC98", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KC98" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100755784", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KC98", "locus": {} } ], "crossref": [ { "id": "A0A9J7KC98", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KC98", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00170", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00170", "database": "CDD", "categories": [ "Protein 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"categories": [ "Protein Classification" ] }, { "id": "IPR051064", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051064", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755784", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755784", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RWQQQLF", "url": "https://omabrowser.org/oma/group/RWQQQLF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A3L7INW6", "url": "https://www.orthodb.org/?gene=A0A3L7INW6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7KC98", "url": "https://www.orthodb.org/?gene=A0A9J7KC98", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23324", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23324", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23324:SF62", "url": 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CANONICAL=A0A9J7KC98-1" }, "isoforms": [ { "isoform_ac": "A0A3L7INW6-1", "url": "https://www.uniprot.org/uniprotkb/A0A3L7INW6/entry", "sequence": { "sequence": "MSGRVGDLSPKQAETLAKFRENVQDVLPALPNPDDYFLLRWLRARNFDLQKSEAMLRKYMEFRKTMDIDHILDWQPPEVIQKYMPGGLCGYDRDGCPVWYDIIGPLDPKGLLFSVTKQDLLKTKMRDCERILHECDLQTERLGRKIETIVMIFDCEGLGLKHFWKPLVEVYQEFFGLLEENYPETLKFMLIVKATKLFPVGYNLMKPFLSEDTRRKIVVLGNSWKEGLLKLISPEELPAHFGGTLTDPDGNPKCLTKINYGGEIPKSMYVRDQVKTQYEHSVQISRGSSHQVEYEILFPGCVLRWQFSSDGADIGFGVFLKTKMGERQKAGEMTEVLTSQRYNAHMVPEDGSLTCSEAGVYVLRFDNTYSFVHAKKVSFTVEVLLPDEGMQKYDEELTPV", "length": 400, "header": "tr|A0A3L7INW6-1|A0A9J7KC98_CRIGR Computationally mapped isoform of SEC14-like protein 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100755784 PE=4 SV=1 CANONICAL=A0A9J7KC98-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HDH2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDH2/entry", "sequence": { "sequence": "MSGRVGDLSPKQAETLAKFRENVQDVLPALPNPDDYFLLRWLRARNFDLQKSEAMLRKYMEFRKTMDIDHILDWQPPEVIQKYMPGGLCGYDRDGCPVWYDIIGPLDPKGLLFSVTKQDLLKTKMRDCERILHECDLQTERLGRKIETIVMIFDCEGLGLKHFWKPLVEVYQEFFGLLEENYPETLKFMLIVKATKLFPVGYNLMKPFLSEDTRRKIVVLGSNWKEGLLKLISPEELPAHFGGTLTDPDGNPKCLTKINYGGEIPKSMYVRDQVKTQYEHSVQISRGSSHQVEYEILFPGCVLRWQFSSDGADIGFGVFLKTKMGERQKAGEMTEVLTSQRYNAHMVPEDGSLTCSEAGVYVLRFDNTYSFVHAKKVSFTVEVLLPDEGMQKYDEELTPV", "length": 400, "header": "tr|A0A9J7HDH2-1|A0A9J7HDH2_CRIGR Computationally mapped isoform of SEC14-like protein 3 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100755784 PE=4 SV=1 CANONICAL=A0A9J7KC98-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KC98-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KC98/entry", "sequence": { "sequence": "MSGRVGDLSPKQAETLAKFRENVQDVLPALPNPDDYFLLRWLRARNFDLQKSEAMLRKYMEFRKTMDIDHILDWQPPEVIQKYMPGGLCGYDRDGCPVWYDIIGPLDPKGLLFSVTKQDLLKTKMRDCERILHECDLQTERLGRKIETIVMIFDCEGLGLKHFWKPLVEVYQEFFGLLEENYPETLKFMLIVKATKLFPVGYNLMKPFLSEDTRRKIVVLGSKFWKEGLLKLISPEELPAHFGGTLTDPDGNPKCLTKINYGGEIPKSMYVRDQVKTQYEHSVQISRGSSHQVEYEILFPGCVLRWQFSSDGADIGFGVFLKTKMGERQKAGEMTEVLTSQRYNAHMVPEDGSLTCSEAGVYVLRFDNTYSFVHAKKVSFTVEVLLPDEGMQKYDEELTPV", "length": 401, "header": "tr|A0A9J7KC98-1|A0A9J7KC98_CRIGR Isoform 1 of SEC14-like protein 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100755784 PE=4 SV=1 CANONICAL=A0A9J7KC98-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A3L7INW6", "url": "https://www.uniprot.org/uniprotkb/A0A3L7INW6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A3L7INW6", "url": "https://www.uniprot.org/uniprotkb/A0A3L7INW6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100755784", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755784", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A286ZQ63-1", "protein_name": "SEC14 like lipid binding 3", "gene_name": "SEC14L3", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": 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"id": "GO:0008289", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008289", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KC98", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KC98" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7KC98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KC98" }, { "id": "PS50191", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50191" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CRAL-TRIO", "eco_id": "ECO_0000259", "start_pos": 76, "end_pos": 250, "start_aa": "Pro", "end_aa": "Asp", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7KC98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KC98" }, { "id": "PS50866", 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"##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035299801", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035299801" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K856", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K856" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Dnajc13", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K856", "locus": {} } ], "crossref": [ { "id": "cd06257", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06257", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100763365", "url": "https://www.ncbi.nlm.nih.gov/gene/100763365", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001623", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001623", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025640", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025640", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035445", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035445", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036869", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036869", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044978", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044978", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045802", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045802", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763365", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763365", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K856", "url": "https://www.orthodb.org/?gene=A0A9J7K856", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR36983", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36983", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR36983:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36983:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00226", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00226", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14237", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14237", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF19432", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19432", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035299801", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035299801", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LKZ6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LKZ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LKZ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LKZ6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K856", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K856", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K856-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K856-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQPVSDSYCVYLWQFQHKMNIIRENKDLACFYTTKHSWRGKYKRVFSVGTHAVTTYNPNTLEVTNQWPYGDICSISPVGKGQGTEFNLTFRKGSGKKSETLKFSTEHRTELLTEALRFRTDFAEGKITGRRYNCYKHHWSDTRKPVILEVTPGGFDQINPVTNRVLCSYDYRNIEGFVDLSDYQGGFCILYGGFSRLHLFASEQREEIIKSAIEHAGNYIGISLRIRKEPLEFEQYLNLRFGKYSTDESITSLAEFVVQKISPRHSEPVKRVLAVTETCLVERDPATYNIATLKPLGEVFALVCDSENPQLFTIEFIKGQVRKYSSTERDSLLASLLDGVRASGNRDVCVKMTPTHKGQRWGLLSMPIDEEVESLHLRFLATPPNGNFADAVFRFNANISYSGVLHAVTQDGLFSENKEKLINNAITALLSQEGDVVASNAELESQFQAVRRLVASKAGFLAFTQLPKFRERLGVKVVKALKRSHNGVVHAAVDMLCALMCPMHDDYDLRQEQLNKASLLSSKKFLENLLEKFNSHVDHGTGALVISSLLDFLTFSLCAPYSETTEGQQFDMLLEMVASNGRTLFKLFQHPSMAIVKGAGLVMKAIIEEGDKEIATKMQELALSEGALPRHLHTAMFTISSDQRMLTNRQLSRHLVGLWTADNTTATNLLKRILPPGLLAYLDSSDPVPEKDADRMHVRDNVKIAMDQYGKFNKVPEWQRLAGKAAKEVEKFAKEKVDLVLMHWRDRMGIAQKENINQKPVVLRKRRQRIKIEANWDLFYYRFSQDHARSNLIWNFKTREELKDALESEMRTFNIDRELGSASVISWNHHEFEVKYECLAEEIKIGDYYLRLLLEEDENEESGSIKRSYEFFNELYHRFLLTPKVNMKCLCLQALAIVYGRCHEEIGPFTDTRYIIGMLERCTDKLERDRLILFLNKLILNKKNVKDLMDSNGIRILVDLLTLAHLHVSRATVPLQSNVIEASPDMKRESEKEWYFGNADKERSGPYGFHEMQELWAKGMLNAKTRCWAQGMDGWRPLQAIPQLKWCLLASGQAVLNETDLATLILNMLITMCGYFPSRDQDNAIIRPLPRVKRLLSDSTCLPHVIQLLLTFDPILVEKVAILLHDIMQDNPQLPRLYLSGVFFFIMMYTGSNVLPVARFLKYTHTKQAFKSEETKGQDIFQRSILGHILPEAMVCYLENYEPEKFSEIFLGEFDTPEAIWSSEMRRLMIEKIAAHLADFTPRLQSNTRALYQYCPIPVINYPQLENELFCNIYYLKQLCDTLRFPDWPIKDPVKLLKDSLDAWKKEVEKKPPMMSIDDAYEVLNLPAGQGLHDESKIRKAYFRLAQKYHPDKNPEGRDMFEKVNKAYEFLCTKSTKIVDGPDPENIILILKTQSILFNRHKEELQPYKYAGYPMLIRTITMETSDDLLFSKESPLLPAAAELAFHTVNCSALNAEELRRENGLEVLQEAFSRCVAVLNRSSKPSDMSVQVCGHISRCYSVAAQFEECREKITEMPGIIKDLCRVLYFGKSIPRVAALAVECVSSFAVDFWLQTHLFQAGILWHLLGYLFNYDYTLEESGIQKNEETNQQEVANSLAKLSVHALSRLGGYLPDDQATPENPTVRKSLAGMLTPYIARKLAVASATEVLKMLNSNTESPYLMWNNSTRAELLEFLESQQENMIKKGDCDKTYGAEFVYSDHAKELIVGEIFVRVYNEVPTFQLEVPKEFAASLLDYIGSQAQYLHTFMAITHAAKVESEQHGDRLPRVEMALEALRNVIKYNPGSESECIGHFKLIFSLLRVHGAGQVQQLALEVVNIVTSNQDCVNNIAESMVLSNLLALLHSLPSSRQLVLETLYALASNTKIIKEAMAKGALIYLLDMFCNSTHPQVRSQTAELFAKMTADKLIGPKVRITLMKFLPSVFMDAMRDNPEAAVHIFEGTHENPELIWNDSSRDKVSTTVREMMLEHFKNQRDNPDVNWKLPEDFAVVFGEAEGELAVGGVFLRIFIAQPAWVLRKPREFLIALLEKLTELLEKNNPHGETLETLTMATVCLFSAQPQLADQVPPLGHLPKVLQAMNHRNNAIPKSAIRVIHALSDNELCVRAMASLETIGPLMNGMKKRADTVGLACEAINRMFQKEQNELVAQALKAELVPYLLKLLEGVGLENIDSPAATKAQIVKALKAMTRSLQFGEQVNEILSRSSVWSAFKDQKHDLFISDSQTAGYLTGPGVAGYLTAGTSSSAMSNLPPPVDHEAGDLGYQT", "length": 2261, "header": "tr|A0A9J7K856-1|A0A9J7K856_CRIGR Isoform 1 of DnaJ homolog subfamily C member 13 isoform X2 OS=Cricetulus griseus OX=10029 GN=Dnajc13 PE=4 SV=1 CANONICAL=A0A9J7K856-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LKZ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LKZ6/entry", "sequence": { "sequence": "MNIIRENKDLACFYTTKHSWRGKYKRVFSVGTHAVTTYNPNTLEVTNQWPYGDICSISPVGKGQGTEFNLTFRKGSGKKSETLKFSTEHRTELLTEALRFRTDFAEGKITGRRYNCYKHHWSDTRKPVILEVTPGGFDQINPVTNRVLCSYDYRNIEGFVDLSDYQGGFCILYGGFSRLHLFASEQREEIIKSAIEHAGNYIGISLRIRKEPLEFEQYLNLRFGKYSTDESITSLAEFVVQKISPRHSEPVKRVLAVTETCLVERDPATYNIATLKPLGEVFALVCDSENPQLFTIEFIKGQVRKYSSTERDSLLASLLDGVRASGNRDVCVKMTPTHKGQRWGLLSMPIDEEVESLHLRFLATPPNGNFADAVFRFNANISYSGVLHAVTQDGLFSENKEKLINNAITALLSQEGDVVASNAELESQFQAVRRLVASKAGFLAFTQLPKFRERLGVKVVKALKRSHNGVVHAAVDMLCALMCPMHDDYDLRQEQLNKASLLSSKKFLENLLEKFNSHVDHGTGALVISSLLDFLTFSLCAPYSETTEGQQFDMLLEMVASNGRTLFKLFQHPSMAIVKGAGLVMKAIIEEGDKEIATKMQELALSEGALPRHLHTAMFTISSDQRMLTNRQLSRHLVGLWTADNTTATNLLKRILPPGLLAYLDSSDPVPEKDADRMHVRDNVKIAMDQYGKFNKVPEWQRLAGKAAKEVEKFAKEKVDLVLMHWRDRMGIAQKENINQKPVVLRKRRQRIKIEANWDLFYYRFSQDHARSNLIWNFKTREELKDALESEMRTFNIDRELGSASVISWNHHEFEVKYECLAEEIKIGDYYLRLLLEEDENEESGSIKRSYEFFNELYHRFLLTPKVNMKCLCLQALAIVYGRCHEEIGPFTDTRYIIGMLERCTDKLERDRLILFLNKLILNKKNVKDLMDSNGIRILVDLLTLAHLHVSRATVPLQSNVIEASPDMKRESEKEWYFGNADKERSGPYGFHEMQELWAKGMLNAKTRCWAQGMDGWRPLQAIPQLKWCLLASGQAVLNETDLATLILNMLITMCGYFPSRDQDNAIIRPLPRVKRLLSDSTCLPHVIQLLLTFDPILVEKVAILLHDIMQDNPQLPRLYLSGVFFFIMMYTGSNVLPVARFLKYTHTKQAFKSEETKGQDIFQRSILGHILPEAMVCYLENYEPEKFSEIFLGEFDTPEAIWSSEMRRLMIEKIAAHLADFTPRLQSNTRALYQYCPIPVINYPQLENELFCNIYYLKQLCDTLRFPDWPIKDPVKLLKDSLDAWKKEVEKKPPMMSIDDAYEVLNLPAGQGLHDESKIRKAYFRLAQKYHPDKNPEGRDMFEKVNKAYEFLCTKSTKIVDGPDPENIILILKTQSILFNRHKEELQPYKYAGYPMLIRTITMETSDDLLFSKESPLLPAAAELAFHTVNCSALNAEELRRENGLEVLQEAFSRCVAVLNRSSKPSDMSVQVCGHISRCYSVAAQFEECREKITEMPGIIKDLCRVLYFGKSIPRVAALAVECVSSFAVDFWLQTHLFQAGILWHLLGYLFNYDYTLEESGIQKNEETNQQEVANSLAKLSVHALSRLGGYLPDDQATPENPTVRKSLAGMLTPYIARKLAVASATEVLKMLNSNTESPYLMWNNSTRAELLEFLESQQENMIKKGDCDKTYGAEFVYSDHAKELIVGEIFVRVYNEVPTFQLEVPKEFAASLLDYIGSQAQYLHTFMAITHAAKVESEQHGDRLPRVEMALEALRNVIKYNPGSESECIGHFKLIFSLLRVHGAGQVQQLALEVVNIVTSNQDCVNNIAESMVLSNLLALLHSLPSSRQLVLETLYALASNTKIIKEAMAKGALIYLLDMFCNSTHPQVRSQTAELFAKMTADKLIGPKVRITLMKFLPSVFMDAMRDNPEAAVHIFEGTHENPELIWNDSSRDKVSTTVREMMLEHFKNQRDNPDVNWKLPEDFAVVFGEAEGELAVGGVFLRIFIAQPAWVLRKPREFLIALLEKLTELLEKNNPHGETLETLTMATVCLFSAQPQLADQVPPLGHLPKVLQAMNHRNNAIPKSAIRVIHALSDNELCVRAMASLETIGPLMNGMKKRADTVGLACEAINRMFQKEQNELVAQALKAELVPYLLKLLEGVGLENIDSPAATKAQIVKALKAMTRSLQFGEQVNEILSRSSVWSAFKDQKHDLFISDSQTAGYLTGPGVAGYLTAGTSSSAMSNLPPPVDHEAGDLGYQT", "length": 2243, "header": "tr|A0A8C2LKZ6-1|A0A9J7K856_CRIGR Computationally mapped isoform of DnaJ homolog subfamily C member 13 isoform X2 OS=Cricetulus griseus OX=10029 GN=Dnajc13 PE=4 SV=1 CANONICAL=A0A9J7K856-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K856-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K856/entry", "sequence": { "sequence": "MQPVSDSYCVYLWQFQHKMNIIRENKDLACFYTTKHSWRGKYKRVFSVGTHAVTTYNPNTLEVTNQWPYGDICSISPVGKGQGTEFNLTFRKGSGKKSETLKFSTEHRTELLTEALRFRTDFAEGKITGRRYNCYKHHWSDTRKPVILEVTPGGFDQINPVTNRVLCSYDYRNIEGFVDLSDYQGGFCILYGGFSRLHLFASEQREEIIKSAIEHAGNYIGISLRIRKEPLEFEQYLNLRFGKYSTDESITSLAEFVVQKISPRHSEPVKRVLAVTETCLVERDPATYNIATLKPLGEVFALVCDSENPQLFTIEFIKGQVRKYSSTERDSLLASLLDGVRASGNRDVCVKMTPTHKGQRWGLLSMPIDEEVESLHLRFLATPPNGNFADAVFRFNANISYSGVLHAVTQDGLFSENKEKLINNAITALLSQEGDVVASNAELESQFQAVRRLVASKAGFLAFTQLPKFRERLGVKVVKALKRSHNGVVHAAVDMLCALMCPMHDDYDLRQEQLNKASLLSSKKFLENLLEKFNSHVDHGTGALVISSLLDFLTFSLCAPYSETTEGQQFDMLLEMVASNGRTLFKLFQHPSMAIVKGAGLVMKAIIEEGDKEIATKMQELALSEGALPRHLHTAMFTISSDQRMLTNRQLSRHLVGLWTADNTTATNLLKRILPPGLLAYLDSSDPVPEKDADRMHVRDNVKIAMDQYGKFNKVPEWQRLAGKAAKEVEKFAKEKVDLVLMHWRDRMGIAQKENINQKPVVLRKRRQRIKIEANWDLFYYRFSQDHARSNLIWNFKTREELKDALESEMRTFNIDRELGSASVISWNHHEFEVKYECLAEEIKIGDYYLRLLLEEDENEESGSIKRSYEFFNELYHRFLLTPKVNMKCLCLQALAIVYGRCHEEIGPFTDTRYIIGMLERCTDKLERDRLILFLNKLILNKKNVKDLMDSNGIRILVDLLTLAHLHVSRATVPLQSNVIEASPDMKRESEKEWYFGNADKERSGPYGFHEMQELWAKGMLNAKTRCWAQGMDGWRPLQAIPQLKWCLLASGQAVLNETDLATLILNMLITMCGYFPSRDQDNAIIRPLPRVKRLLSDSTCLPHVIQLLLTFDPILVEKVAILLHDIMQDNPQLPRLYLSGVFFFIMMYTGSNVLPVARFLKYTHTKQAFKSEETKGQDIFQRSILGHILPEAMVCYLENYEPEKFSEIFLGEFDTPEAIWSSEMRRLMIEKIAAHLADFTPRLQSNTRALYQYCPIPVINYPQLENELFCNIYYLKQLCDTLRFPDWPIKDPVKLLKDSLDAWKKEVEKKPPMMSIDDAYEVLNLPAGQGLHDESKIRKAYFRLAQKYHPDKNPEGRDMFEKVNKAYEFLCTKSTKIVDGPDPENIILILKTQSILFNRHKEELQPYKYAGYPMLIRTITMETSDDLLFSKESPLLPAAAELAFHTVNCSALNAEELRRENGLEVLQEAFSRCVAVLNRSSKPSDMSVQVCGHISRCYSVAAQFEECREKITEMPGIIKDLCRVLYFGKSIPRVAALAVECVSSFAVDFWLQTHLFQAGILWHLLGYLFNYDYTLEESGIQKNEETNQQEVANSLAKLSVHALSRLGGYLPDDQATPENPTVRKSLAGMLTPYIARKLAVASATEVLKMLNSNTESPYLMWNNSTRAELLEFLESQQENMIKKGDCDKTYGAEFVYSDHAKELIVGEIFVRVYNEVPTFQLEVPKEFAASLLDYIGSQAQYLHTFMAITHAAKVESEQHGDRLPRVEMALEALRNVIKYNPGSESECIGHFKLIFSLLRVHGAGQVQQLALEVVNIVTSNQDCVNNIAESMVLSNLLALLHSLPSSRQLVLETLYALASNTKIIKEAMAKGALIYLLDMFCNSTHPQVRSQTAELFAKMTADKLIGPKVRITLMKFLPSVFMDAMRDNPEAAVHIFEGTHENPELIWNDSSRDKVSTTVREMMLEHFKNQRDNPDVNWKLPEDFAVVFGEAEGELAVGGVFLRIFIAQPAWVLRKPREFLIALLEKLTELLEKNNPHGETLETLTMATVCLFSAQPQLADQVPPLGHLPKVLQAMNHRNNAIPKSAIRVIHALSDNELCVRAMASLETIGPLMNGMKKRADTVGLACEAINRMFQKEQNELVAQALKAELVPYLLKLLEGVGLENIDSPAATKAQIVKALKAMTRSLQFGEQVNEILSRSSVWSAFKDQKHDLFISDSQTAGYLTGPGVAGYLTAGTSSSAMSNLPPPVDHEAGDLGYQT", "length": 2261, "header": "tr|A0A9J7K856-1|A0A9J7K856_CRIGR Isoform 1 of DnaJ homolog subfamily C member 13 isoform X2 OS=Cricetulus griseus OX=10029 GN=Dnajc13 PE=4 SV=1 CANONICAL=A0A9J7K856-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LKZ6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LKZ6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LKZ6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LKZ6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100763365", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763365", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "regulation of early endosome to late endosome transport", "id": "GO:2000641", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000641", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K856", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K856" } ], "pmid": "" }, { "name": "endosome organization", "id": "GO:0007032", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007032", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K856", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K856" } ], "pmid": "" }, { "name": "receptor-mediated endocytosis", "id": "GO:0006898", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006898", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K856", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K856" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endosome membrane", "id": "GO:0010008", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010008", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K856", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K856" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1057, "end_pos": 1059, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1449, "end_pos": 1451, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1479, "end_pos": 1481, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1663, "end_pos": 1665, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1664, "end_pos": 1666, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1883, "end_pos": 1885, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1949, "end_pos": 1951, "annotation": "n_glycosylation_sequon" }, { "start_pos": 398, "end_pos": 400, "annotation": "n_glycosylation_sequon" }, { "start_pos": 663, "end_pos": 665, "annotation": "n_glycosylation_sequon" }, { "start_pos": 87, "end_pos": 89, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7K856", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K856" }, { "id": "PS50076", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50076" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "J", "eco_id": 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"XP_035305846", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305846", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MNG3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MNG3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MNG3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MNG3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H6G5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6G5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H6G5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6G5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KDE0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDE0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KDE0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDE0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAASQGGGGNSGGGGCGGGGSGGGGGAAGGGGGGGGGGGGGGAGMGGGGGCGGTVAVPIPVPTLFGQPFPNGPQWHPGSLQPQHTVRSLDRALEEAGNSGILSLSGRKLRDFPGSGYDLTDTTQADLSRNRFTEIPSDVWLFAPLETLNLYHNCIKTIPEAIKNLQMLTYLNISRNLLSTLPKYLFDLPLKVLVVSNNKLVSIPEEIGKLKDLMELDISCNEIQVLPQQMGKLHSLKELNIRRNNLHVLPDELGDLPLVKLDFSCNKVTEIPVCYRKLHHLQVIILDNNPLQVPPAQICLKGKVHIFKYLNIQACCRMDKKPDSLDLPSLSKRMPSQPLTDSMEDFYPNKNHGPDSGIGSDNGEKRLSTTEPSDDDTISLHSQVSESNREQTSRNDSHVIGSKPDSQKDPEVYDFIDPNTEDVAVPEQGDTHIGSFVSFLKGKEKCSEKSQKNEEVGNEKKLDKVQLLPEEDDDDLKEVTDLRKIAAQLLKQEQKNRWRPLSYRTSFSDKLFQRTRAAGRKSRILNHSTSVMRNKLKQTVEYEKSVSADEGNSPLSPLAWQPLENQKDQIEQQWPESQPIIWQNEERRRSKQIRKEYFKYKSTRKNSSGNENEEEYDRTDGFSHGPFGLKPRSAFSRASRQEYGAADPGFTMRRKMEHLREEREQIRQLRNNLESRLKVILPDDIGAALMDGVVLCHLANHIRPRSVASIHVPSPAVPKLSMAKCRRNVENFLDACKKLGVSQERLCLPHHILEERGLVKVGVTVQALLELPTTKASQLSMA", "length": 782, "header": "tr|A0A9J7KDE0-1|A0A9J7KDE0_CRIGR Isoform 1 of Leucine-rich repeat and calponin homology domain-containing protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Lrch2 PE=4 SV=1 CANONICAL=A0A9J7KDE0-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MNG3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MNG3/entry", "sequence": { "sequence": "MAASQGGGGNSGGGGCGGGGSGGGGGAAGGGGGGGGGGGGGGAGMGGGGGCGGTVAVPIPVPTLFGQPFPNGPQWHPGSLQPQHTVRSLDRALEEAGNSGILSLSGRKLRDFPGSGYDLTDTTQADLSRNRFTEIPSDVWLFAPLETLNLYHNCIKTIPEAIKNLQMLTYLNISRNLLSTLPKYLFDLPLKVLVVSNNKLVSIPEEIGKLKDLMELDISCNEIQVLPQQMGKLHSLKELNIRRNNLHVLPDELGDLPLVKLDFSCNKVTEIPVCYRKLHHLQVIILDNNPLQVPPAQICLKGKVHIFKYLNIQACCRMDKKPDSLDLPSLSKRMPSQPLTDSMEDFYPNKNHGPDSGIGSDNGEKRLSTTEPSDDDTISLHSQVSESNREQTSRNDSHVIGSKPDSQKDPEVYDFIDPNTEDVAVPEQGDTHIGSFVSFLKGKEKCSEKSQKNEEVGNEKKLDKVQLLPEEDDDDLKEVTDLRKIAAQLLKQEQKNRILNHSTSVMRNKLKQTVEYEKSVSADEGNSPLSPLAWQPLENQKDQIEQQWPESQPIIWQNEERRRSKQIRKEYFKYKSTRKNSSGNENEEQESDNAHMSPQSPVSSEEYDRTDGFSHGPFGLKPRSAFSRASRQEYGAADPGFTMRRKMEHLREEREQIRQLRNNLESRLKVILPDDIGAALMDGVVLCHLANHIRPRSVASIHVPSPAVPKLSMAKCRRNVENFLDACKKLGVSQERLCLPHHILEERGLVKVGVTVQALLELPTTKASQLSMA", "length": 773, "header": "tr|A0A8C2MNG3-1|A0A9J7KDE0_CRIGR Computationally mapped isoform of Leucine-rich repeat and calponin homology domain-containing protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Lrch2 PE=4 SV=1 CANONICAL=A0A9J7KDE0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H6G5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6G5/entry", "sequence": { "sequence": "MAASQGGGGNSGGGGCGGGGSGGGGGAAGGGGGGGGGGGGGGAGMGGGGGCGGTVAVPIPVPTLFGQPFPNGPQWHPGSLQPQHTVRSLDRALEEAGNSGILSLSGRKLRDFPGSGYDLTDTTQADLSRNRFTEIPSDVWLFAPLETLNLYHNCIKTIPEAIKNLQMLTYLNISRNLLSTLPKYLFDLPLKVLVVSNNKLVSIPEEIGKLKDLMELDISCNEIQVLPQQMGKLHSLKELNIRRNNLHVLPDELGDLPLVKLDFSCNKVTEIPVCYRKLHHLQVIILDNNPLQVPPAQICLKGKVHIFKYLNIQACCRMDKKPDSLDLPSLSKRMPSQPLTDSMEDFYPNKNHGPDSGIGSDNGEKRLSTTEPSDDDTISLHSQVSESNREQTSRNDSHVIGSKPDSQKDPEVYDFIDPNTEDVAVPEQGDTHIGSFVSFLKGKEKCSEKSQKNEEVGNEKKLDKVQLLPEEDDDDLKEVTDLRKIAAQLLKQEQKNRILNHSTSVMRNKLKQTVEYEKSVSADEGNSPLSPLAWQPLENQKDQIEQQWPESQPIIWQNEERRRSKQIRKEYFKYKSTRKNSSGNENEEEYDRTDGFSHGPFGLKPRSAFSRASRQEYGAADPGFTMRRKMEHLREEREQIRQLRNNLESRLKVILPDDIGAALMDGVVLCHLANHIRPRSVASIHVPSPAVPKLSMAKCRRNVENFLDACKKLGVSQERLCLPHHILEERGLVKVGVTVQALLELPTTKASQLSMA", "length": 756, "header": "tr|A0A9J7H6G5-1|A0A9J7H6G5_CRIGR Computationally mapped isoform of Leucine-rich repeat and calponin homology domain-containing protein 2 isoform X4 OS=Cricetulus griseus OX=10029 GN=Lrch2 PE=4 SV=1 CANONICAL=A0A9J7KDE0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KDE0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDE0/entry", "sequence": { "sequence": "MAASQGGGGNSGGGGCGGGGSGGGGGAAGGGGGGGGGGGGGGAGMGGGGGCGGTVAVPIPVPTLFGQPFPNGPQWHPGSLQPQHTVRSLDRALEEAGNSGILSLSGRKLRDFPGSGYDLTDTTQADLSRNRFTEIPSDVWLFAPLETLNLYHNCIKTIPEAIKNLQMLTYLNISRNLLSTLPKYLFDLPLKVLVVSNNKLVSIPEEIGKLKDLMELDISCNEIQVLPQQMGKLHSLKELNIRRNNLHVLPDELGDLPLVKLDFSCNKVTEIPVCYRKLHHLQVIILDNNPLQVPPAQICLKGKVHIFKYLNIQACCRMDKKPDSLDLPSLSKRMPSQPLTDSMEDFYPNKNHGPDSGIGSDNGEKRLSTTEPSDDDTISLHSQVSESNREQTSRNDSHVIGSKPDSQKDPEVYDFIDPNTEDVAVPEQGDTHIGSFVSFLKGKEKCSEKSQKNEEVGNEKKLDKVQLLPEEDDDDLKEVTDLRKIAAQLLKQEQKNRWRPLSYRTSFSDKLFQRTRAAGRKSRILNHSTSVMRNKLKQTVEYEKSVSADEGNSPLSPLAWQPLENQKDQIEQQWPESQPIIWQNEERRRSKQIRKEYFKYKSTRKNSSGNENEEEYDRTDGFSHGPFGLKPRSAFSRASRQEYGAADPGFTMRRKMEHLREEREQIRQLRNNLESRLKVILPDDIGAALMDGVVLCHLANHIRPRSVASIHVPSPAVPKLSMAKCRRNVENFLDACKKLGVSQERLCLPHHILEERGLVKVGVTVQALLELPTTKASQLSMA", "length": 782, "header": "tr|A0A9J7KDE0-1|A0A9J7KDE0_CRIGR Isoform 1 of Leucine-rich repeat and calponin homology domain-containing protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Lrch2 PE=4 SV=1 CANONICAL=A0A9J7KDE0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MNG3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MNG3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MNG3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MNG3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100755198", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755198", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KDE0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDE0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 172, "end_pos": 174, "annotation": "n_glycosylation_sequon" }, { "start_pos": 395, "end_pos": 397, "annotation": "n_glycosylation_sequon" }, { "start_pos": 526, "end_pos": 528, "annotation": "n_glycosylation_sequon" }, { "start_pos": 606, "end_pos": 608, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7KDE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDE0" }, { "id": "PS50021", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50021" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Calponin-homology (CH)", "eco_id": "ECO_0000259", "start_pos": 659, "end_pos": 772, "start_aa": "Leu", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 172, "end_pos": 174 }, { "start_pos": 395, "end_pos": 397 }, { "start_pos": 526, "end_pos": 528 }, { "start_pos": 606, "end_pos": 608 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"synonym", "evidence": [ { "id": "XP_035305300", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305300" } ] } ], "protein_names": [ { "name": "Isochorismatase domain-containing protein 2A isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7K9I8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9I8/entry#names_and_taxonomy" } ] }, { "name": "isochorismatase domain-containing protein 2A isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035305300", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305300" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035305300", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305300" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K9I8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9I8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100767490", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9I8", "locus": {} } ], "crossref": [ { "id": "A0A9J7K9I8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K9I8", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd01012", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01012", "database": "CDD", "categories": [ "Protein 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7KBU2-1", "uniprot_ac": "A0A9J7KBU2", "uniprot_id": "A0A9J7KBU2_CRIGR", "mass": { "chemical_mass": 120046.0, "monoisotopic_mass": 120046.0 }, "refseq": { "ac": "XP_035308273", "name": "serine-rich coiled-coil domain-containing protein 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308273" }, "gene_names": [ { "name": "Ccser2", "type": "recommended", "evidence": [ { "id": "A0A9J7KBU2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBU2" } ] }, { "name": "Ccser2", "type": "synonym", "evidence": [ { "id": "XP_035308273", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308273" } ] } ], "protein_names": [ { "name": "Serine-rich coiled-coil domain-containing protein 2 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7KBU2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBU2/entry#names_and_taxonomy" } ] }, { "name": "serine-rich coiled-coil domain-containing protein 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_035308273", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308273" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308273", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308273" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KBU2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBU2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ccser2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBU2", "locus": {} } ], "crossref": [ { "id": "100752321", "url": "https://www.ncbi.nlm.nih.gov/gene/100752321", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029627", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029627", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752321", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752321", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NECTKHT", "url": "https://omabrowser.org/oma/group/NECTKHT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7KBU2", "url": "https://www.orthodb.org/?gene=A0A9J7KBU2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22461", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22461", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22461:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22461:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_035308273", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308273", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N0P1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0P1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N0P1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0P1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N740", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N740", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N740-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N740-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F1C8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1C8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F1C8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1C8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCJ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCJ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCJ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCJ0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J5C5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5C5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J5C5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5C5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J789", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J789", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J789-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J789-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J7C5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7C5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J7C5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7C5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KBU2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBU2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KBU2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBU2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEEKAQIKTFLGSRLPKYGTKSVRSTLQPMPNGATVTLLGNSKNSNVKSYIKNNGSDCSLSHSFNWRQANKYQLGSQNTAELNSIQSAHGKLTDPEQHAPAPGTLDGNGIKGGLKSASLFTSKLARPSTMFLSSTEELNQKSFSGPSNLGKFTKGTLLGRTSYSSVNAKSHLNTFYRNQSPGNMQKPRVNSCATRSSSGESLAQSPDNTKSITCEKMVRSQSFSHSIQNSFLPPSSITRSHSFNRAVDLTKPYQNQQLPVRVPLRSGMLTRNSRQSEVLNGNEHLGFGFNRPYAAGGKKLALSNGPGVSSTLGYRMVHPSLLKSGRPPFPGTMTVDSNKNSPADMCVEEEAVVLAKDDSTGKDQELVENESYRTDNDQTMKHESKIRYLSDDVDDISLSSLSSSDKNDLSEDFSDDFIDLEDSNRTRITPEEITLKEEKCENRSSKDIFDSPKENGQIFSKADEWIDISVSDRSECTKHTSGNNLISPDTDYRAGSSFELSPSDSSDGTYMWDEEGLEPIGTVHPVGSYDSSEMNSIDILNNLESCDLEDDDLMLDVDLPEDAPLENVECDNMNRFDRADRNVRQSQDGFWKRAPQRWSGQEHYHLSHPDHYHHHGKSDLSRGSPYRETPLGHFESYGGTPFFQAQKMFVDVPDNTVILDEMTLRHMVQDCTAVKTQLLKLKRLLHQHDGSGSLNDVELSLPSSPEPEDDDQIYKNEDLLNEIKQLKEEIKKKDEKIQLLEHRLATRCNCHQKSKEEKCTYADKYTQTPWRRIPGGYSAPSFSPWQGSFQGMPRTVPPHRRQSQTSFCISRLGKKPQVLQPSSSLPRPTDHAQGKLIKPQHIEAHSENTVQGMCQSDAHPDGSFTHGLQQENSYGLKDCPFSSSPQFPMDVVKDVPSETNLSMTMNAQEPHHLAKNQPSDMEFVTTPPQTPSKSSTVNQTKKVRRSQSPQPKSLQPSKPSILSSVAHPPDSDSSPSRTSTSKKAPVITPCNSKHQPTSNQNNLANNLNLKVSKLRPPSGSFKQKQISNPQPEPQNFQAKTSIPRPLARSKELQNSLSNLHSGDYVASNRYSRLPKPKIN", "length": 1079, "header": "tr|A0A9J7KBU2-1|A0A9J7KBU2_CRIGR Isoform 1 of Serine-rich coiled-coil domain-containing protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ccser2 PE=3 SV=1 CANONICAL=A0A9J7KBU2-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N0P1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0P1/entry", "sequence": { "sequence": "MEEKAQIKTFLGSRLPKYGTKSVRSTLQPMPNGATVTLLGNSKNSNVKSYIKNNGSDCSLSHSFNWRQANKYQLGSQNTAELNSIQSAHGKLTDPEQHAPAPGTLDGNGIKGGLKSASLFTSKLARPSTMFLSSTEELNQKSFSGPSNLGKFTKGTLLGRTSYSSVNAKSHLNTFYRNQSPGNMQKPRVNSCATRSSSGESLAQSPDNTKSITCEKMVRSQSFSHSIQNSFLPPSSITRSHSFNRAVDLTKPYQNQQLPVRVPLRSGMLTRNSRQSEVLNGNEHLGFGFNRPYAAGGKKLALSNGPGVSSTLGYRMVHPSLLKSGRPPFPGTMTVDSNKNSPADMCVEEEAVVLAKDDSTGKDQELVENESYRTDNDQTMKHESKIRYLSDDVDDISLSSLSSSDKNDLSEDFSDDFIDLEDSNRTRITPEEITLKEEKCENRSSKDIFDSPKENGQIFSKADEWIDISVSDRSECTKHTSGNNLISPDTDYRAGSSFELSPSDSSDGTYMWDEEGLEPIGTVHPVGSYDSSEMNSIDILNNLESCDLEDDDLMLDVDLPEDAPLENVECDNMNRFDRADRNVRQSQDGFWKRAPQRWSGQEHYHLSHPDHYHHHGKSDLSRGSPYRETPLGHFESYGGTPFFQAQKMFVDVPDNTVILDEMTLRHMVQDCTAVKTQLLKLKRLLHQHDGSGSLNDVELSLPSSPEPEDDDQIYKNEDLLNEIKQLKEEIKKKDEKIQLLEHRLATRCNCHQKSKEEKCTYADKYTQTPWRRIPPQVLQPSSSLPRPTDHAQGKLIKPQHIEAHSENTVQGMCQSDAHPDGSFTHGLQQENSYGLKDCPFSSSPQFPMDVVKDVPSETNLSMTMNAQEPHHLAKNQPSDMEFVTTPPQTPSKSSTVNQTKKVRRSQSPQPKSLQPSKPSILSSVAHPPDSDSSPSRTSTSKKAPVITPCNSKHQPTSNQNNLANNLNLKVSKLRPPSGSFKQKQISNPQPEPQNFQAKTSIPRPLARSKELQNSLSNLHSGDYVASNRYSRLPKPKIN", "length": 1038, "header": "tr|A0A8C2N0P1-1|A0A9J7KBU2_CRIGR Computationally mapped isoform of Serine-rich coiled-coil domain-containing protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ccser2 PE=3 SV=1 CANONICAL=A0A9J7KBU2-1" }, "locus": {} }, { "isoform_ac": "A0A8C2N740-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N740/entry", "sequence": { "sequence": "MEEKAQIKTFLGSRLPKYGTKSVRSTLQPMPNGATVTLLGNSKNSNVKSYIKNNGSDCSLSHSFNWRQANKYQLGSQNTAELNSIQSAHGKLTDPEQHAPAPGTLDGNGIKGGLKSASLFTSKLARPSTMFLSSTEELNQKSFSGPSNLGKFTKGTLLGRTSYSSVNAKSHLNTFYRNQSPGNMQKPRVNSCATRSSSGESLAQSPDNTKSITCEKMVRSQSFSHSIQNSFLPPSSITRSHSFNRAVDLTKPYQNQQLPVRVPLRSGMLTRNSRQSEVLNGNEHLGFGFNRPYAAGGKKLALSNGPGVSSTLGYRMVHPSLLKSGRPPFPGTMTVDSNKNSPADMCVEEEAVVLAKDDSTGKDQELVENESYRTDNDQTMKHESKIRYLSDDVDDISLSSLSSSDKNDLSEDFSDDFIDLEDSNRTRITPEEITLKEEKCENRSSKDIFDSPKENGQIFSKADEWIDISVSDRSECTKHTSGNNLISPDTDYRAGSSFELSPSDSSDGTYMWDEEGLEPIGTVHPVGSYDSSEMNSIDILNNLESCDLEDDDLMLDVDLPEDAPLENVECDNMNRFDRADRNVRQSQDGFWKRAPQRWSGQEHYHLSHPDHYHHHGKSDLSRGSPYRETPLGHFESYGGTPFFQAQKMFVDVPDNTVILDEMTLRHMVQDCTAVKTQLLKLKRLLHQHDGSGSLNDVELSLPSSPEPEDDDQIYKNEDLLNEIKQLKEEIKKKDEKIQLLEHRLATRCNCHQKSKEEKCTYADKYTQTPWRRIPGGYSAPSFSPWQGSFQGMPRTVPPHRRQTSSTTAFQQPSQTYRPRPGKTNKATTYRGPQ", "length": 833, "header": "tr|A0A8C2N740-1|A0A9J7KBU2_CRIGR Computationally mapped isoform of Serine-rich coiled-coil domain-containing protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ccser2 PE=3 SV=1 CANONICAL=A0A9J7KBU2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F1C8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1C8/entry", "sequence": { "sequence": "MEEKAQIKTFLGSRLPKYGTKSVRSTLQPMPNGATVTLLGNSKNSNVKSYIKNNGSDCSLSHSFNWRQANKYQLGSQNTAELNSIQSAHGKLTDPEQHAPAPGTLDGNGIKGGLKSASLFTSKLARPSTMFLSSTEELNQKSFSGPSNLGKFTKGTLLGRTSYSSVNAKSHLNTFYRNQSPGNMQKPRVNSCATRSSSGESLAQSPDNTKSITCEKMVRSQSFSHSIQNSFLPPSSITRSHSFNRAVDLTKPYQNQQLPVRVPLRSGMLTRNSRQSEVLNGNEHLGFGFNRPYAAGGKKLALSNGPGVSSTLGYRMVHPSLLKSGRPPFPGTMTVDSNKNSPADMCVEEEAVVLAKDDSTGKDQELVENESYRTDNDQTMKHESKIRYLSDDVDDISLSSLSSSDKNDLSEDFSDDFIDLEDSNRTRITPEEITLKEEKCENRSSKDIFDSPKENGQIFSKADEWIDISVSDRSECTKHTSGNNLISPDTDYRAGSSFELSPSDSSDGTYMWDEEGLEPIGTVHPVGSYDSSEMNSIDILNNLESCDLEDDDLMLDVDLPEDAPLENVECDNMNRFDRADRNVRQSQDGFWKRAPQRWSGQEHYHLSHPDHYHHHGKSDLSRGSPYRETPLGHFESYGGTPFFQAQKMFVDVPDNTVILDEMTLRHMVQDCTAVKTQLLKLKRLLHQHDGSGSLNDVELSLPSSPEPEDDDQIYKNEDLLNEIKQLKEEIKKKDEKIQLLEHRLATRCNCHQKSKEEKCTYADKYTQTPWRRIPGSFQGMPRTVPPHRRQSESVSLTPILLWLPLHASSTTAFQQPSQTYRPRPGKTNKATTYRGPQ", "length": 837, "header": "tr|A0A9J7F1C8-1|A0A9J7KBU2_CRIGR Computationally mapped isoform of Serine-rich coiled-coil domain-containing protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ccser2 PE=3 SV=1 CANONICAL=A0A9J7KBU2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HCJ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCJ0/entry", "sequence": { "sequence": "MEEKAQIKTFLGSRLPKYGTKSVRSTLQPMPNGATVTLLGNSKNSNVKSYIKNNGSDCSLSHSFNWRQANKYQLGSQNTAELNSIQSAHGKLTDPEQHAPAPGTLDGNGIKGGLKSASLFTSKLARPSTMFLSSTEELNQKSFSGPSNLGKFTKGTLLGRTSYSSVNAKSHLNTFYRNQSPGNMQKPRVNSCATRSSSGESLAQSPDNTKSITCEKMVRSQSFSHSIQNSFLPPSSITRSHSFNRAVDLTKPYQNQQLPVRVPLRSGMLTRNSRQSEVLNGNEHLGFGFNRPYAAGGKKLALSNGPGVSSTLGYRMVHPSLLKSGRPPFPGTMTVDSNKNSPADMCVEEEAVVLAKDDSTGKDQELVENESYRTDNDQTMKHESKIRYLSDDVDDISLSSLSSSDKNDLSEDFSDDFIDLEDSNRTRITPEEITLKEEKCENRSSKDIFDSPKENGQIFSKADEWIDISVSDRSECTKHTSGNNLISPDTDYRAGSSFELSPSDSSDGTYMWDEEGLEPIGTVHPVGSYDSSEMNSIDILNNLESCDLEDDDLMLDVDLPEDAPLENVECDNMNRFDRADRNVRQSQDGFWKRAPQRWSGQEHYHLSHPDHYHHHGKSDLSRGSPYRETPLGHFESYGGTPFFQAQKMFVDVPDNTVILDEMTLRHMVQDCTAVKTQLLKLKRLLHQHDGSGSLNDVELSLPSSPEPEDDDQIYKNEDLLNEIKQLKEEIKKKDEKIQLLEHRLATRCNCHQKSKEEKCTYADKYTQTPWRRIPGSFQGMPRTVPPHRRQSQTSFCISRLGKKPQVLQPSSSLPRPTDHAQGKLIKPQHIEAHSENTVQGMCQSDAHPDGSFTHGLQQENSYGLKDCPFSSSPQFPMDVVKDVPSETNLSMTMNAQEPHHLAKNQPSDMEFVTTPPQTPSKSSTVNQTKKVRRSQSPQPKSLQPSKPSILSSVAHPPDSDSSPSRTSTSKKAPVITPCNSKHQPTSNQNNLANNLNLKVSKLRPPSGSFKQKQISNPQPEPQNFQAKTSIPRPLARSKELQNSLSNLHSGDYVASNRYSRLPKPKIN", "length": 1067, "header": "tr|A0A9J7HCJ0-1|A0A9J7HCJ0_CRIGR Computationally mapped isoform of Serine-rich coiled-coil domain-containing protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ccser2 PE=3 SV=1 CANONICAL=A0A9J7KBU2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J5C5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5C5/entry", "sequence": { "sequence": "MEEKAQIKTFLGSRLPKYGTKSVRSTLQPMPNGATVTLLGNSKNSNVKSYIKNNGSDCSLSHSFNWRQANKYQLGSQNTAELNSIQSAHGKLTDPEQHAPAPGTLDGNGIKGGLKSASLFTSKLARPSTMFLSSTEELNQKSFSGPSNLGKFTKGTLLGRTSYSSVNAKSHLNTFYRNQSPGNMQKPRVNSCATRSSSGESLAQSPDNTKSITCEKMVRSQSFSHSIQNSFLPPSSITRSHSFNRAVDLTKPYQNQQLPVRVPLRSGMLTRNSRQSEVLNGNEHLGFGFNRPYAAGGKKLALSNGPGVSSTLGYRMVHPSLLKSGRPPFPGTMTVDSNKNSPADMCVEEEAVVLAKDDSTGKDQELVENESYRTDNDQTMKHESKIRYLSDDVDDISLSSLSSSDKNDLSEDFSDDFIDLEDSNRTRITPEEITLKEEKCENRSSKDIFDSPKENGQIFSKADEWIDISVSDRSECTKHTSGNNLISPDTDYRAGSSFELSPSDSSDGTYMWDEEGLEPIGTVHPVGSYDSSEMNSIDILNNLESCDLEDDDLMLDVDLPEDAPLENVECDNMNRFDRADRNVRQSQDGFWKRAPQRWSGQEHYHLSHPDHYHHHGKSDLSRGSPYRETPLGHFESYGGTPFFQAQKMFVDVPDNTVILDEMTLRHMVQDCTAVKTQLLKLKRLLHQHDGSGSLNDVELSLPSSPEPEDDDQIYKNEDLLNEIKQLKEEIKKKDEKIQLLEHRLATRCNCHQKSKEEKCTYADKYTQTPWRRIPGGYSAPSFSPWQGSFQGMPRTVPPHRRQSESVSLTPILLWLPLHASSTTAFQQPSQTYRPRPGKTNKATTYRGPQ", "length": 849, "header": "tr|A0A9J7J5C5-1|A0A9J7J5C5_CRIGR Computationally mapped isoform of Serine-rich coiled-coil domain-containing protein 2 isoform X4 OS=Cricetulus griseus OX=10029 GN=Ccser2 PE=3 SV=1 CANONICAL=A0A9J7KBU2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J789-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J789/entry", "sequence": { "sequence": "MEEKAQIKTFLGSRLPKYGTKSVRSTLQPMPNGATVTLLGNSKNSNVKSYIKNNGSDCSLSHSFNWRQANKYQLGSQNTAELNSIQSAHGKLTDPEQHAPAPGTLDGNGIKGGLKSASLFTSKLARPSTMFLSSTEELNQKSFSGPSNLGKFTKGTLLGRTSYSSVNAKSHLNTFYRNQSPGNMQKPRVNSCATRSSSGESLAQSPDNTKSITCEKMVRSQSFSHSIQNSFLPPSSITRSHSFNRAVDLTKPYQNQQLPVRVPLRSGMLTRNSRQSEVLNGNEHLGFGFNRPYAAGGKKLALSNGPGVSSTLGYRMVHPSLLKSGRPPFPGTMTVDSNKNSPADMCVEEEAVVLAKDDSTGKDQELVENESYRTDNDQTMKHESKIRYLSDDVDDISLSSLSSSDKNDLSEDFSDDFIDLEDSNRTRITPEEITLKEEKCENRSSKDIFDSPKENGQIFSKADEWIDISVSDRSECTKHTSGNNLISPDTDYRAGSSFELSPSDSSDGTYMWDEEGLEPIGTVHPVGSYDSSEMNSIDILNNLESCDLEDDDLMLDVDLPEDAPLENVECDNMNRFDRADRNVRQSQDGFWKRAPQRWSGQEHYHLSHPDHYHHHGKSDLSRGSPYRETPLGHFESYGGTPFFQAQKMFVDVPDNTVILDEMTLRHMVQDCTAVKTQLLKLKRLLHQHDGSGSLNDVELSLPSSPEPEDDDQIYKNEDLLNEIKQLKEEIKKKDEKIQLLEHRLATRCNCHQKSKEEKCTYADKYTQTPWRRIPGSFQGMPRTVPPHRRQTSSTTAFQQPSQTYRPRPGKTNKATTYRGPQ", "length": 821, "header": "tr|A0A9J7J789-1|A0A9J7J789_CRIGR Computationally mapped isoform of Serine-rich coiled-coil domain-containing protein 2 isoform X6 OS=Cricetulus griseus OX=10029 GN=Ccser2 PE=3 SV=1 CANONICAL=A0A9J7KBU2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J7C5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7C5/entry", "sequence": { "sequence": "MEEKAQIKTFLGSRLPKYGTKSVRSTLQPMPNGATVTLLGNSKNSNVKSYIKNNGSDCSLSHSFNWRQANKYQLGSQNTAELNSIQSAHGKLTDPEQHAPAPGTLDGNGIKGGLKSASLFTSKLARPSTMFLSSTEELNQKSFSGPSNLGKFTKGTLLGRTSYSSVNAKSHLNTFYRNQSPGNMQKPRVNSCATRSSSGESLAQSPDNTKSITCEKMVRSQSFSHSIQNSFLPPSSITRSHSFNRAVDLTKPYQNQQLPVRVPLRSGMLTRNSRQSEVLNGNEHLGFGFNRPYAAGGKKLALSNGPGVSSTLGYRMVHPSLLKSGRPPFPGTMTVDSNKNSPADMCVEEEAVVLAKDDSTGKDQELVENESYRTDNDQTMKHESKIRYLSDDVDDISLSSLSSSDKNDLSEDFSDDFIDLEDSNRTRITPEEITLKEEKCENRSSKDIFDSPKENGQIFSKADEWIDISVSDRSECTKHTSGNNLISPDTDYRAGSSFELSPSDSSDGTYMWDEEGLEPIGTVHPVGSYDSSEMNSIDILNNLESCDLEDDDLMLDVDLPEDAPLENVECDNMNRFDRADRNVRQSQDGFWKRAPQRWSGQEHYHLSHPDHYHHHGKSDLSRICLCYGMLPLCIPARSEWELLVAHTLTSIGCCGLDINPSRLSL", "length": 665, "header": "tr|A0A9J7J7C5-1|A0A9J7J7C5_CRIGR Computationally mapped isoform of Serine-rich coiled-coil domain-containing protein 2 isoform X7 OS=Cricetulus griseus OX=10029 GN=Ccser2 PE=3 SV=1 CANONICAL=A0A9J7KBU2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KBU2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBU2/entry", "sequence": { "sequence": "MEEKAQIKTFLGSRLPKYGTKSVRSTLQPMPNGATVTLLGNSKNSNVKSYIKNNGSDCSLSHSFNWRQANKYQLGSQNTAELNSIQSAHGKLTDPEQHAPAPGTLDGNGIKGGLKSASLFTSKLARPSTMFLSSTEELNQKSFSGPSNLGKFTKGTLLGRTSYSSVNAKSHLNTFYRNQSPGNMQKPRVNSCATRSSSGESLAQSPDNTKSITCEKMVRSQSFSHSIQNSFLPPSSITRSHSFNRAVDLTKPYQNQQLPVRVPLRSGMLTRNSRQSEVLNGNEHLGFGFNRPYAAGGKKLALSNGPGVSSTLGYRMVHPSLLKSGRPPFPGTMTVDSNKNSPADMCVEEEAVVLAKDDSTGKDQELVENESYRTDNDQTMKHESKIRYLSDDVDDISLSSLSSSDKNDLSEDFSDDFIDLEDSNRTRITPEEITLKEEKCENRSSKDIFDSPKENGQIFSKADEWIDISVSDRSECTKHTSGNNLISPDTDYRAGSSFELSPSDSSDGTYMWDEEGLEPIGTVHPVGSYDSSEMNSIDILNNLESCDLEDDDLMLDVDLPEDAPLENVECDNMNRFDRADRNVRQSQDGFWKRAPQRWSGQEHYHLSHPDHYHHHGKSDLSRGSPYRETPLGHFESYGGTPFFQAQKMFVDVPDNTVILDEMTLRHMVQDCTAVKTQLLKLKRLLHQHDGSGSLNDVELSLPSSPEPEDDDQIYKNEDLLNEIKQLKEEIKKKDEKIQLLEHRLATRCNCHQKSKEEKCTYADKYTQTPWRRIPGGYSAPSFSPWQGSFQGMPRTVPPHRRQSQTSFCISRLGKKPQVLQPSSSLPRPTDHAQGKLIKPQHIEAHSENTVQGMCQSDAHPDGSFTHGLQQENSYGLKDCPFSSSPQFPMDVVKDVPSETNLSMTMNAQEPHHLAKNQPSDMEFVTTPPQTPSKSSTVNQTKKVRRSQSPQPKSLQPSKPSILSSVAHPPDSDSSPSRTSTSKKAPVITPCNSKHQPTSNQNNLANNLNLKVSKLRPPSGSFKQKQISNPQPEPQNFQAKTSIPRPLARSKELQNSLSNLHSGDYVASNRYSRLPKPKIN", "length": 1079, "header": "tr|A0A9J7KBU2-1|A0A9J7KBU2_CRIGR Isoform 1 of Serine-rich coiled-coil domain-containing protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ccser2 PE=3 SV=1 CANONICAL=A0A9J7KBU2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N0P1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0P1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2N0P1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N0P1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100752321", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752321", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A287B4Q0-1", "protein_name": "Coiled-coil serine rich protein 2", "gene_name": "CCSER2", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEEKTQIKTFLGSRLPKYGTKSVRSTLQPMPNGKPVNLLGTSKSSNIKSFIKNNGSDCSSSHSFNWRTANKYQFSAQSPEEPNNTQSSHDKVIDPEKHVPTQGVFDKNGIKGGLKSISLFTSKLAKPTTMFVSSTEELNQKSLSGPSNLGKFTKGTLLGRTSYASVSAPKSQLNGFYGNRSTGSIQRPRANSCATRSSSGESLAQSLDNIKSLACEKMVRSQSFSHSIQNSFLPPSSITRSHSFNRAADLTKPYQNQQPPIRVPLRSSMLTRNSRQTEVLNGNEHLGYGFNRPYAAGGKKLALPNGPGVTSTLGYRMVHPSLLKSSRPPFSGTITVDGNKNSPADTCIEEDDTLVTKDRAANKDQELIENDSYRTENDQTVKHDAKIRYLSDDVDDISLSSLSSSDKNDLSEDFSDDFIDMEDSNRTRITPEEISLKEEKHENVPPKDIFDSPKENEKSFIKTEEWIDISVSDRSECSKHTSGNNLISPDTDYRAGSSFELSPSDSSDGTYMWDEEGLEPIGNVHPVGSYESSEMNSIDILNNLESCDLEDDDLMLDVDLPEDAPLENVECDNMNRFDRSDRNVRQSQEGFWKRPPQRWSGQEHYHLSHPDHYHHHGKSDLSRGSPYRESPLGHFESYGGTPFFQAQKMFVDVPENTVILDEMTLRHMVQDCTAVKTQLLKLKRLLHQHDGSGSLHDVQLSLPSSPEPEDSDQIYKNEDLLNEINQLKEEIKKKDEKIQLLEHQLATRCNCNQKSKEEKCTYADKYTQTPWRRIPGGYSAPSFSPWQGSFQGIPRTVPPHRRQTSSTTAFQQPSQTHRPRPGKTNKAATYRGPQ", "length": 834 }, "evidence": [ { "id": "A0A9J7KBU2", "url": "https://omabrowser.org/oma/group/A0A9J7KBU2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8V0YD74-1", "protein_name": "Coiled-coil serine rich protein 2", "gene_name": "CCSER2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEEKNQIRTSLVSRLPKYGTKTLGSALQPTSNGTAVNLAGNNGGKNFSKHNGTVNMSSFSFNWRKSNRYQLHDQNERETNSKHNCNDKLIDSEKYSQSQGALSNDMLRVGLNNTASVGSKTAKQNNMFVSSTEESNPKSLPGLSGSAKFTKGALSGRTSCSGLSAPKSHLNGFYGSRPMVGLQRPRANSNASRTSSGESLVHSTDNSKSSSCEKMVRSQSFSHSIQSSFLPTASLTRSHSFNKAVDLTRPYSQNLAVRTSQRSTLWTRNSRQLDVPNGNESVKYGFTRPYSSISSSCTKKPPLSNGSGSAPSFGYRLSRPSLLKPTSQRFAGNIIMDGGKSTTPDTYIVENSEISTNINRTIEKNSIIESNAQRTESVDGLHESMGKHGSNVMCMSDDGDEISISSLSSSEKNDLSEDFSDDFIDLEDPNKTIRVQQKESCIQELEHGSITSVEPFTSLKESGGSCCNADDWLDINVSAMDDNSESTKHTAESVISPEMNYRAGSSFELSPSDSSDGTYMWDEEGLEPIGSVHPCGSYESSEMNSIDILNNLDSCDLEDDDLMLDVDLPEDPPNDKDECENMSRYDRQDRNARQHQEGFWKRAPQQRWNAQDHYHLGHTEHYIHGKNDLNRGSNYLESSVGHFESYGAPNFYQAPRQLVSLPENTVMLDEMTLRHMVQDCTAVKTQLLKLKRLLHQNDENDSLQDISLSIPSSPEPQEPESTYFKTEDLLNEIRQLKDELKKKDETINQLEHQLASRCNCQKDSQKPTVAKCVYADKFTQTSWRRSSPQVLQPSSSLPSSTDLVQGKLIKMPYIEAPSEYSKHGVHENGNHQNQNAANVSLRNSLNDVNTSVNTQLSIKDENALYLENVKNKCTEDPGEVASDKEGTLLSCSRLQTSTRFDAREVRTEVAVKGQPSFTYQASRPKTSRIAKPPTALVPPTMAVLTRSANHSAASKEPELLLSSSSTQLQPTSGPDDLKGKQSQKVSKLRPPTISFIKSKQVSSQKSTSVSQEPQSTCLKTNIPKPQVQRKENVQTQNTALHSGDSLPSNRHSRLPKPKTH", "length": 1060 }, "evidence": [ { "id": "A0A9J7KBU2", "url": "https://omabrowser.org/oma/group/A0A9J7KBU2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D4A4E5-1", "protein_name": "Coiled-coil serine-rich protein 2", "gene_name": "Ccser2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEEKTQIKTFLGSKLPKYGMKSVRSTLQPMSNGATVTLLGTSKSSNVKSYIKNNGSDCSLSHSFNWRKTNKYQLGSQNTAELNNIQITHDKLIDTEQHAPAPGTLDGNGIEGGLNSTSLFTSKLARPSAMFVSSAEELSQKSFSGPSNLGKFTKGTLLGRTSYSSVSAKSHLNTFYGNRPPGNMQKPRMNSCASRSSSGESLAQSPDNAKSITCEKMVRSQSFSHSIQNAFLPPSSITRSHSFNRAVDLTKPYQNQQLPVRVPLRSGMLTRSARQSEVLNGNEHLGFGFNRPYAAGGKKLALSSGPGVSSTLVYRMGHPSLLKSSRPPFSGSMTVDSNKNPSADMCVEEEGVVSAKDSSTGKDQELIENESYRRDNDQTMKHDSKIRYLSDDVDDISLSSLSSSDKNDLSEDFSDDFIDLEDSNRTRITPEDITLKEEKHENGPSKDVFDSPKESEQIFSKADEWIDISVSDRSECTKHMSGNNLISPDTDYRAGSSFELSPSDSSDGTYMWDEEGLEPIGSVHPVGSYESSEMNSIDILNNLESCDLEDDDLMLDVDLPEDAPLENVDCDNMNRFDRTDRNVRQSQDGFWKRPSQRWSGQDHYHLSHPDHYHHHGKSDLSRGSPYRESPLGHFESYGGTPFFQAQKMFVDVPDNTVILDEMTLRHMVQDCTAVKTQLLKLKRLLHQHDGSGSLHDVQLSLPSSPEPEDGDQIYTNEDLLNEIKQLKEELKKKDEKIQLLEHQLATRCNCHQKSKEDRCAYADKFTQTPWRRSPGGYSAPSFSPWQGSFQGMPRTVPPHRRQTSSTTASQQPSQIYRPRPGKINKVTTYRGPQ", "length": 833 }, "evidence": [ { "id": "A0A9J7KBU2", "url": "https://omabrowser.org/oma/group/A0A9J7KBU2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q3UHI0-1", "protein_name": "Serine-rich coiled-coil domain-containing protein 2", "gene_name": "Ccser2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEEKTQIKTFLGSKLPKYGMKSVRSTLQPMPNGATVTLLGTSKSSNVKSYIKNNGSDCSLSHSFNWRKTNKYQLGSQNTAELNNIQSTHDKLIEPEQHAPAPGTLDGHGIKGGLKSASLFTSKLARPSTMFVSSAEELSQKSFSGPSNLGKFTKGTLLGRTSYSSVNAKSHLNAFYGNRSSGNVQKPRVNSCASRSSSGESLAQSPDNAKSITCEKMVRSQSFSHSIQNVFLPPSSITRSHSFNRAVDLTKPYQNQQLPVRVPLRSGMLTRSSLQSEVLNGNEHVGFGFNRPYAAAGKKLALSNGPAVSSTLVYRMAHPPLLKSSRPPFSGPMTVDSNKNPPADMCVEEEGMVSAQDSSPGKDQELIENESYRRDNDQTGKNESKVRYLSDDVDDISLSSLSSSDKNDLSEDFSDDFIDLEDSNRTRITPEEMTLKEEKHESRPSKDIFDSPKESEQAFSKAEEWIDISVSDRSECTKHTSGNNLISPDTDYRAGSSFELSPSDSSDGTYMWDEEGLEPIGSVHPVGSYESSEMNSIDILNNLESCDLEDDDLMLDVDLPEDAPLENVECDNMNRFDRTDRNVRQSQDGFWKRPPQRWSGQDHYHLSHPGHYHHHGQSDLSRGSPYRESPLGHFESYGGTPFFQAQKMFVDVPDNTVILDEMTLRHMVQDCTAVKTQLLKLKRLLHQHDGSGSLHDVQLSLPSSPEPEDGDQIYKNEDLLNEITQLKEEIKKKDEKIQLLEQQLATRCNCQQKSKEEKCTYADKYTQTPWRRIPGGYCAPSFSPWQGSFQGMPRTVPPHRRQTSSTTAFQQPSQIYRPRPGKTNKATTYRGPQ", "length": 833 }, "evidence": [ { "id": "A0A9J7KBU2", "url": "https://omabrowser.org/oma/group/A0A9J7KBU2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H7U1-1", "protein_name": "Serine-rich coiled-coil domain-containing protein 2", "gene_name": "CCSER2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEEKTQIKTFLGSKLPKYGTKSVRSTLQPMPNGTPVNLLGTSKNSNVKSYIKNNGSDCPSSHSFNWRKANKYQLCAQGVEEPNNTQNSHDKIIDPEKRVPTQGMFDKNGIKGGLKSVSLFTSKLAKPSTMFVSSTEELNQKSFSGPSNLGKFTKGTLLGRTSYSSINTPKSQLNGFYGNRSAGSMQRPRANSCATRSSSGESLAQSPDSSKSINCEKMVRSQSFSHSIQNSFLPPSSITRSHSFNRAVDLTKPYQNQQLSIRVPLRSSMLTRNSRQPEVLNGNEHLGYGFNRPYAAGGKKLALPNGPGVTSTLGYRMVHPSLLKSSRSPFSGTMTVDGNKNSPADTCVEEDATVLAKDRAANKDQELIENESYRTKNNQTMKHDAKMRYLSDDVDDISLSSLSSSDKNDLSEDFSDDFIDIEDSNRTRITPEEMSLKEEKHENGPPQDMFDSPKENEKAFSKTDEWIDISVSDRSECTKHTSGNNLVSPDTDYRAGSSFELSPSDSSDGTYMWDEEGLEPIGNVHPVGSYESSEMNSIDILNNLESCDLEDDDLMLDVDLPEDAPLENVECDNMNRFDRPDRNVRQPQEGFWKRPPQRWSGQEHYHLSHPDHYHHHGKSDLSRGSPYRESPLGHFESYGGMPFFQAQKMFVDVPENTVILDEMTLRHMVQDCTAVKTQLLKLKRLLHQHDGSGSLHDIQLSLPSSPEPEDGDKVYKNEDLLNEIKQLKDEIKKKDEKIQLLELQLATQHICHQKCKEEKCTYADKYTQTPWRRIPGGYSAPSFSPWQGSFQGIPRTVPPHRRQTSSTTAFQQPSQTHRSHPGKTNKATTYRGPQ", "length": 834 }, "evidence": [ { "id": "A0A9J7KBU2", "url": "https://omabrowser.org/oma/group/A0A9J7KBU2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "microtubule binding", "id": "GO:0008017", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008017", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KBU2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBU2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "microtubule cytoskeleton", "id": "GO:0015630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015630", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KBU2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBU2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "microtubule bundle formation", "id": "GO:0001578", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001578", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KBU2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBU2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 178, "end_pos": 180, "annotation": "n_glycosylation_sequon" }, { "start_pos": 369, "end_pos": 371, "annotation": "n_glycosylation_sequon" }, { "start_pos": 424, "end_pos": 426, "annotation": "n_glycosylation_sequon" }, { "start_pos": 442, "end_pos": 444, "annotation": "n_glycosylation_sequon" }, { "start_pos": 54, "end_pos": 56, "annotation": "n_glycosylation_sequon" }, { "start_pos": 900, "end_pos": 902, "annotation": "n_glycosylation_sequon" }, { "start_pos": 938, "end_pos": 940, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 178, "end_pos": 180 }, { "start_pos": 369, "end_pos": 371 }, { "start_pos": 424, "end_pos": 426 }, { "start_pos": 442, "end_pos": 444 }, { "start_pos": 54, "end_pos": 56 }, { "start_pos": 900, "end_pos": 902 }, { "start_pos": 938, "end_pos": 940 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7K8Q1-1", "uniprot_ac": "A0A9J7K8Q1", "uniprot_id": "A0A9J7K8Q1_CRIGR", "mass": { "chemical_mass": 38853.0, "monoisotopic_mass": 38853.0 }, "refseq": { "ac": "XP_035300259", "name": "opioid-binding protein/cell adhesion molecule isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300259" }, "gene_names": [ { "name": "Opcml", "type": "recommended", "evidence": [ { "id": "A0A9J7K8Q1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8Q1" } ] }, { "name": "Opcml", "type": "synonym", "evidence": [ { "id": "XP_035300259", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300259" } ] } ], "protein_names": [ { "name": "Opioid-binding protein/cell adhesion molecule isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7K8Q1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8Q1/entry#names_and_taxonomy" } ] }, { "name": "opioid-binding protein/cell adhesion molecule isoform X1", "type": "synonym", "evidence": [ { "id": "XP_035300259", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300259" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035300259", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300259" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K8Q1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8Q1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Opcml", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8Q1", "locus": {} } ], "crossref": [ { "id": "A0A9J7K8Q1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K8Q1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100753173", "url": "https://www.ncbi.nlm.nih.gov/gene/100753173", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013098", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013098", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013151", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013151", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050876", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050876", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100753173", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753173", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RKYKVGW", "url": "https://omabrowser.org/oma/group/RKYKVGW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7K8Q1", "url": "https://www.orthodb.org/?gene=A0A9J7K8Q1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR42757", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR42757", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR42757:SF17", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR42757:SF17", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00047", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00047", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07679", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07679", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13927", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13927", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035300259", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300259", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QE57", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QE57", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QE57-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QE57-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FSU1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSU1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FSU1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSU1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K8Q1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8Q1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K8Q1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8Q1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGVCGYLFLPWKCLVVVSLRLLFLVPTGVPVRSGDATFPKAMDNVTVRQGESATLRCTIDDRVTRVAWLNRSTILYAGNDKWSIDPRVIILVNTPTQYSIMIQNVDVYDEGPYTCSVQTDNHPKTSRVHLIVQVPPQIMNISSDITVNEGSSVTLLCLAIGRPEPTVTWRHLSVKEGQGFVSEDEYLEISDIKRDQSGEYECSALNDVAAPDVRKVKITVNYPPYISKAKNTGVSVGQKGILSCEASAVPMAEFQWFKEDTRLATGLDGVRIENKGRISTLTFFNVSEKDYGNYTCVATNKLGNTNASITLYEISPSSAVAGPGAVIDGVNSASRALACLWLSGTFFAHFFIKF", "length": 354, "header": "tr|A0A9J7K8Q1-1|A0A9J7K8Q1_CRIGR Isoform 1 of Opioid-binding protein/cell adhesion molecule isoform X1 OS=Cricetulus griseus OX=10029 GN=Opcml PE=3 SV=1 CANONICAL=A0A9J7K8Q1-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QE57-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QE57/entry", "sequence": { "sequence": "MGVCGYLFLPWKCLVVVSLRLLFLVPTGVPVRSGDATFPKAMDNVTVRQGESATLRCTIDDRVTRVAWLNRSTILYAGNDKWSIDPRVIILVNTPTQYSIMIQNVDVYDEGPYTCSVQTDNHPKTSRVHLIVQVPPQIMNISSDITVNEGSSVTLLCLAIGRPEPTVTWRHLSVKEGQGFVSEDEYLEISDIKRDQSGEYECSALNDVAAPDVRKVKITVNYPPYISKAKNTGVSVGQKGILSCEASAVPMAEFQWFKEDTRLATGLDGVRIENKGRISTLTFFNVSEKDYGNYTCVATNKLGNTNASITLYGPGAVIDGVNSASRALACLWLSGTFFAHFFIKF", "length": 345, "header": "tr|A0A8C2QE57-1|A0A9J7K8Q1_CRIGR Computationally mapped isoform of Opioid-binding protein/cell adhesion molecule isoform X1 OS=Cricetulus griseus OX=10029 GN=Opcml PE=3 SV=1 CANONICAL=A0A9J7K8Q1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FSU1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSU1/entry", "sequence": { "sequence": "MGVCGYLFLPWKCLVVVSLRLLFLVPTGVPVRSGDATFPKAMDNVTVRQGESATLRCTIDDRVTRVAWLNRSTILYAGNDKWSIDPRVIILVNTPTQYSIMIQNVDVYDEGPYTCSVQTDNHPKTSRVHLIVQVPPQIMNISSDITVNEGSSVTLLCLAIGRPEPTVTWRHLSVKGQGFVSEDEYLEISDIKRDQSGEYECSALNDVAAPDVRKVKITVNYPPYISKAKNTGVSVGQKGILSCEASAVPMAEFQWFKEDTRLATGLDGVRIENKGRISTLTFFNVSEKDYGNYTCVATNKLGNTNASITLYGPGAVIDGVNSASRALACLWLSGTFFAHFFIKF", "length": 344, "header": "tr|A0A9J7FSU1-1|A0A9J7K8Q1_CRIGR Computationally mapped isoform of Opioid-binding protein/cell adhesion molecule isoform X1 OS=Cricetulus griseus OX=10029 GN=Opcml PE=3 SV=1 CANONICAL=A0A9J7K8Q1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K8Q1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8Q1/entry", "sequence": { "sequence": "MGVCGYLFLPWKCLVVVSLRLLFLVPTGVPVRSGDATFPKAMDNVTVRQGESATLRCTIDDRVTRVAWLNRSTILYAGNDKWSIDPRVIILVNTPTQYSIMIQNVDVYDEGPYTCSVQTDNHPKTSRVHLIVQVPPQIMNISSDITVNEGSSVTLLCLAIGRPEPTVTWRHLSVKEGQGFVSEDEYLEISDIKRDQSGEYECSALNDVAAPDVRKVKITVNYPPYISKAKNTGVSVGQKGILSCEASAVPMAEFQWFKEDTRLATGLDGVRIENKGRISTLTFFNVSEKDYGNYTCVATNKLGNTNASITLYEISPSSAVAGPGAVIDGVNSASRALACLWLSGTFFAHFFIKF", "length": 354, "header": "tr|A0A9J7K8Q1-1|A0A9J7K8Q1_CRIGR Isoform 1 of Opioid-binding protein/cell adhesion molecule isoform X1 OS=Cricetulus griseus OX=10029 GN=Opcml PE=3 SV=1 CANONICAL=A0A9J7K8Q1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QE57", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QE57" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QE57", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QE57" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100753173", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753173", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZTF2-1", "protein_name": "Opioid binding protein/cell adhesion molecule like", "gene_name": "OPCML", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MFPSLPACWLDVSGSFSSSSLGVCRPLSPAVAVYITPGWLEGCADKPNCQQILQLHLQSWASGGCGKPLRRVEVKPNGIFICASPRAVGEKRKGKKAVPFSEESCHDGECRRWWKGCTALVCTVCTVDDRVTRVAWLNRSTILYAGNDKWSIDNRVVILSNTKTQYSIKIHNVDVYDEGPYTCSVQTDNHPKTSRVHLIVQVPPQIVNISSDITVNEGSSVTLMCLAFGRPEPTVTWRHLSGKGQGFVSEDEYLEITGITREQSGEYECSAVNDVAVPDVRKVKVTVNYPPYISNAKNTGASVGQKGILQCEASAVPVAEFQWFKEDTRLANGLEGVRIESKGRLSTLTFFNVSEKDYGNYTCVATNKLGNTNASIILYGPGAVHDSGNAASRAAAGLCLWATLLARLLLDF", "length": 412 }, "evidence": [ { "id": "A0A9J7K8Q1", "url": "https://omabrowser.org/oma/group/A0A9J7K8Q1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G5E8G3-1", "protein_name": "Opioid binding protein/cell adhesion molecule-like", "gene_name": "Opcml", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGVCGYLFLPWKCLVVVSLRLLFLVPTGVPVRSGDATFPKAMDNVTVRQGESATLRCTIDDRVTRVAWLNRSTILYAGNDKWSIDPRVIILVNTPTQYSIMIQNVDVYDEGPYTCSVQTDNHPKTSRVHLIVQVPPQIMNISSDITVNEGSSVTLLCLAIGRPEPTVTWRHLSVKEGQGFVSEDEYLEISDIKRDQSGEYECSALNDVAAPDVRKVKITVNYPPYISKAKNTGVSVGQKGILSCEASAVPMAEFQWFKEDTRLATGLDGVRIENKGRISTLTFFNVSEKDYGNYTCVATNKLGNTNASITLYGPGAVIDGVNSASRALACLWLSGTFFAHFFIKF", "length": 345 }, "evidence": [ { "id": "A0A9J7K8Q1", "url": "https://omabrowser.org/oma/group/A0A9J7K8Q1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P11834-1", "protein_name": "Opioid-binding protein/cell adhesion molecule", "gene_name": "OPCML", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGVCGSLFQPWKCLVVVSLRLLFLVPTGVPVRSGDATFPKAMDNVTVRQGESATLRCTIDDRVTRVAWLNRSTILYAGNDKWSIDPRVIILVNTPTQYSIMIQNVDVYDEGPYTCSVQTDNHPKTSRVHLIVQVPPQIMNISSDVTVNEGSSVTLLCLAIGRPEPTVTWRHLSVKEGQGFVSEDEYLEISDIKRDQSGEYECSALNDVAAPDVRKVKITVNYPPYISKAKNTGVSVGQKGILSCEASAVPMAEFQWFKEDTRLATGLDGMRIENKGHISTLTFFNVSEKDYGNYTCVATNKLGITNASITLYGPGAVIDGVNSASRALACLWLSGTLFAHFFIKF", "length": 345 }, "evidence": [ { "id": "A0A9J7K8Q1", "url": "https://omabrowser.org/oma/group/A0A9J7K8Q1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P32736-1", "protein_name": "Opioid-binding protein/cell adhesion molecule", "gene_name": "Opcml", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGVCGYLFLPWKCLVVVSLRLLFLVPTGVPVRSGDATFPKAMDNVTVRQGESATLRCTIDDRVTRVAWLNRSTILYAGNDKWSIDPRVIILVNTPTQYSIMIQNVDVYDEGPYTCSVQTDNHPKTSRVHLIVQVPPQIMNISSDITVNEISSVTLLCLAIGRPEPTVTWRHLSVKEGQGFVSEDEYLEISDIKRDQSGEYECSALNDVAAPDVRKVKITVNYPPYISKAKNTGVSVGQKGILSCEASAVPMAEFQWFKEDTRLATGLDGVRIENKGRISTLTFFNVSEKDYGNYTCVATNKLGNTNASITLYGPGAVIDGVNSASRALACLWLSGTFFAHFFIKF", "length": 345 }, "evidence": [ { "id": "A0A9J7K8Q1", "url": "https://omabrowser.org/oma/group/A0A9J7K8Q1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q14982-1", "protein_name": "Opioid-binding protein/cell adhesion molecule", "gene_name": "OPCML", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGVCGYLFLPWKCLVVVSLRLLFLVPTGVPVRSGDATFPKAMDNVTVRQGESATLRCTIDDRVTRVAWLNRSTILYAGNDKWSIDPRVIILVNTPTQYSIMIQNVDVYDEGPYTCSVQTDNHPKTSRVHLIVQVPPQIMNISSDITVNEGSSVTLLCLAIGRPEPTVTWRHLSVKEGQGFVSEDEYLEISDIKRDQSGEYECSALNDVAAPDVRKVKITVNYPPYISKAKNTGVSVGQKGILSCEASAVPMAEFQWFKEETRLATGLDGMRIENKGRMSTLTFFNVSEKDYGNYTCVATNKLGNTNASITLYGPGAVIDGVNSASRALACLWLSGTLLAHFFIKF", "length": 345 }, "evidence": [ { "id": "A0A9J7K8Q1", "url": "https://omabrowser.org/oma/group/A0A9J7K8Q1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K8Q1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8Q1" } ], "pmid": "" }, { "name": "side of membrane", "id": "GO:0098552", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098552", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K8Q1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8Q1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cell adhesion", "id": "GO:0007155", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007155", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K8Q1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8Q1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 140, "end_pos": 142, "annotation": "n_glycosylation_sequon" }, { "start_pos": 285, "end_pos": 287, "annotation": "n_glycosylation_sequon" }, { "start_pos": 293, "end_pos": 295, "annotation": "n_glycosylation_sequon" }, { "start_pos": 306, "end_pos": 308, "annotation": "n_glycosylation_sequon" }, { "start_pos": 44, "end_pos": 46, "annotation": "n_glycosylation_sequon" }, { "start_pos": 70, "end_pos": 72, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035306565", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306565" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KDX2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDX2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tsga13", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDX2", "locus": {} } ], "crossref": [ { "id": "A0A9J7KDX2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KDX2", "database": "AlphaFoldDB", "categories": [] }, { "id": "103159910", "url": "https://www.ncbi.nlm.nih.gov/gene/103159910", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029241", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029241", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:103159910", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103159910", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WIIKNAT", "url": "https://omabrowser.org/oma/group/WIIKNAT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7HBW5", "url": "https://www.orthodb.org/?gene=A0A9J7HBW5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR37352", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37352", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR37352:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37352:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14994", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14994", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035306565", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306565", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QI67", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QI67", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QI67-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QI67-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H7K3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7K3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H7K3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7K3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H9M0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9M0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H9M0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9M0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H9X6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9X6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H9X6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9X6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HAS1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAS1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HAS1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAS1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HBW5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBW5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HBW5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBW5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KAI4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAI4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KAI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAI4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KDX2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDX2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KDX2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDX2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLEDCRIPGPAIKMGWRKVVLALEVSASLPSALLMEFNLLLPGQDQPVLGDPWVTDQPVVFSTGLQGNEEMERESWKCLWTHGARHEFSHARLPPVHLTSRHFLLPQLLSLPALLHRGRPWIPVPLNCVQNVLTYVRPYIVTSREKNLHSKTTCDIQIILPSTTPLLRDASACPGTSTGTERVGKKLSQPPWSTEETMDGHLCREHTDISTALVCGCGQRALDQTVLTVRPKETPRALGTEHLLWEVEELEGRPAVCSLKLQGKVKEKTEEWWHVYHPCKHYLGNKRSPGNYGLLPTCTNPNMLDTTRYGLGRRWRGPGRG", "length": 321, "header": "tr|A0A9J7KDX2-1|A0A9J7KDX2_CRIGR Isoform 1 of Testis-specific gene 13 protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Tsga13 PE=4 SV=1 CANONICAL=A0A9J7KDX2-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QI67-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QI67/entry", "sequence": { "sequence": "MGPKKQTKFLDDRTSKTMENVSVKFEKKTDPDDELFDTTGPSKFVLKNLRYYTTHPNMAKYYEPLKPSKLQRFLTQRKKMNSFMIKVAEYDQDMTLLLMTNNPPPCSVSLQEDDGSPKYFPPDFQFKETQLQPKPTKNFFLPTMPQKKKLRPDLKTVFPMKWIGDPPSKGQQWFRFSTDNDFKTEGKYSEVYALRKQRKMYPNLIFAPASQREAKKDVSKKSEDATPTSSMLLEPLTFLKLLEEKPTRTVPGENVFRYGRAQQWVIQNATVIK", "length": 273, "header": "tr|A0A8C2QI67-1|A0A9J7KDX2_CRIGR Computationally mapped isoform of Testis-specific gene 13 protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Tsga13 PE=4 SV=1 CANONICAL=A0A9J7KDX2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H7K3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7K3/entry", "sequence": { "sequence": "MERESWKCLWTHGARHEFSHARLPPVHLTSRHFLLPQLLSLPALLHRGRPWIPVPLNCVQNVLTYVRPYIVTSREKNLHSKTTCDIQIILPSTTPLLRDASACPGTSTGTERVGKKLSQPPWSTEETMDGHLCREHTDISTALVCGCGQRALDQTVLTVRPKETPRALGTEHLLWEVEELEGRPAVCSLKLQGKVKEKTEEWWHVYHPCKHYLGNKRSPGNYGLLPTCTNPNMLDTTRYGLGRRWRGPGRG", "length": 251, "header": "tr|A0A9J7H7K3-1|A0A9J7H7K3_CRIGR Computationally mapped isoform of Testis-specific gene 13 protein isoform X8 OS=Cricetulus griseus OX=10029 GN=Tsga13 PE=4 SV=1 CANONICAL=A0A9J7KDX2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H9M0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9M0/entry", "sequence": { "sequence": "MGQLPFHGLQGNEEMERESWKCLWTHGARHEFSHARLPPVHLTSRHFLLPQLLSLPALLHRGRPWIPVPLNCVQNVLTYVRPYIVTSREKNLHSKTTCDIQIILPSTTPLLRDASACPGTSTGTERVGKKLSQPPWSTEETMDGHLCREHTDISTALVCGCGQRALDQTVLTVRPKETPRALGTEHLLWEVEELEGRPAVCSLKLQGKVKEKTEEWWHVYHPCKHYLGNKRSPGNYGLLPTCTNPNMLDTTRYGLGRRWRGPGRG", "length": 265, "header": "tr|A0A9J7H9M0-1|A0A9J7H9M0_CRIGR Computationally mapped isoform of Testis-specific gene 13 protein isoform X7 OS=Cricetulus griseus OX=10029 GN=Tsga13 PE=4 SV=1 CANONICAL=A0A9J7KDX2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H9X6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9X6/entry", "sequence": { "sequence": "MGKAKLAQWPSCCPASLTVEPWNEMPEGNPGPGEGTGGIGVAEHTMTRLPPVHLTSRHFLLPQLLSLPALLHRGRPWIPVPLNCVQNVLTYVRPYIVTSREKNLHSKTTCDIQIILPSTTPLLRDASACPGTSTGTERVGKKLSQPPWSTEETMDGHLCREHTDISTALVCGCGQRALDQTVLTVRPKETPRALGTEHLLWEVEELEGRPAVCSLKLQGKVKEKTEEWWHVYHPCKHYLGNKRSPGNYGLLPTCTNPNMLDTTRYGLGRRWRGPGRG", "length": 277, "header": "tr|A0A9J7H9X6-1|A0A9J7H9X6_CRIGR Computationally mapped isoform of Testis-specific gene 13 protein isoform X4 OS=Cricetulus griseus OX=10029 GN=Tsga13 PE=4 SV=1 CANONICAL=A0A9J7KDX2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HAS1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAS1/entry", "sequence": { "sequence": "MLEDCRIPGPAIKMGWRKVVLALEVSASLPSALLMEFNLLLPGQDQPVLGDPWVTDQPLPPVHLTSRHFLLPQLLSLPALLHRGRPWIPVPLNCVQNVLTYVRPYIVTSREKNLHSKTTCDIQIILPSTTPLLRDASACPGTSTGTERVGKKLSQPPWSTEETMDGHLCREHTDISTALVCGCGQRALDQTVLTVRPKETPRALGTEHLLWEVEELEGRPAVCSLKLQGKVKEKTEEWWHVYHPCKHYLGNKRSPGNYGLLPTCTNPNMLDTTRYGLGRRWRGPGRG", "length": 287, "header": "tr|A0A9J7HAS1-1|A0A9J7HAS1_CRIGR Computationally mapped isoform of Testis-specific gene 13 protein isoform X3 OS=Cricetulus griseus OX=10029 GN=Tsga13 PE=4 SV=1 CANONICAL=A0A9J7KDX2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HBW5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBW5/entry", "sequence": { "sequence": "MNFTDRFLDDRTSKTMENVSVKFEKKTDPDDELFDTTGPSKFVLKNLRYYTTHPNMAKYYEPLKPSKLQRFLTQRKKMNSFMIKVAEYDQDMTLLLMTNNPPPCSVSLQEDDGSPKYFPPDFQFKETQLQPKPTKNFFLPTMPQKKKLRPDLKTVFPMKWIGDPPSKGQQWFRFSTDNDFKTEGKYSEVYALRKQRKMYPNLIFAPASQREAKKDVSKKSEDATPTSSMLLEPLTFLKLLEEKPTRTVPGENVFRYGRAQQWVIQNATVIK", "length": 271, "header": "tr|A0A9J7HBW5-1|A0A9J7HBW5_CRIGR Computationally mapped isoform of Testis-specific gene 13 protein isoform X5 OS=Cricetulus griseus OX=10029 GN=Tsga13 PE=4 SV=1 CANONICAL=A0A9J7KDX2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KAI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAI4/entry", "sequence": { "sequence": "MSDSGSWIEEAKSLTVRTGFLTNLSCRLAPSTPLAVPAVSRLPPVHLTSRHFLLPQLLSLPALLHRGRPWIPVPLNCVQNVLTYVRPYIVTSREKNLHSKTTCDIQIILPSTTPLLRDASACPGTSTGTERVGKKLSQPPWSTEETMDGHLCREHTDISTALVCGCGQRALDQTVLTVRPKETPRALGTEHLLWEVEELEGRPAVCSLKLQGKVKEKTEEWWHVYHPCKHYLGNKRSPGNYGLLPTCTNPNMLDTTRYGLGRRWRGPGRG", "length": 270, "header": "tr|A0A9J7KAI4-1|A0A9J7KAI4_CRIGR Computationally mapped isoform of Testis-specific gene 13 protein isoform X6 OS=Cricetulus griseus OX=10029 GN=Tsga13 PE=4 SV=1 CANONICAL=A0A9J7KDX2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KDX2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDX2/entry", "sequence": { "sequence": "MLEDCRIPGPAIKMGWRKVVLALEVSASLPSALLMEFNLLLPGQDQPVLGDPWVTDQPVVFSTGLQGNEEMERESWKCLWTHGARHEFSHARLPPVHLTSRHFLLPQLLSLPALLHRGRPWIPVPLNCVQNVLTYVRPYIVTSREKNLHSKTTCDIQIILPSTTPLLRDASACPGTSTGTERVGKKLSQPPWSTEETMDGHLCREHTDISTALVCGCGQRALDQTVLTVRPKETPRALGTEHLLWEVEELEGRPAVCSLKLQGKVKEKTEEWWHVYHPCKHYLGNKRSPGNYGLLPTCTNPNMLDTTRYGLGRRWRGPGRG", "length": 321, "header": "tr|A0A9J7KDX2-1|A0A9J7KDX2_CRIGR Isoform 1 of Testis-specific gene 13 protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Tsga13 PE=4 SV=1 CANONICAL=A0A9J7KDX2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QI67", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QI67" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QI67", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QI67" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:103159910", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103159910", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZMN0-1", "protein_name": "Testis specific, 13", "gene_name": "Tsga13", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGPKKNSKLQESGGSKTSIKFEKQLGPDDEEMYDTTAQSKFVLKNLRHYTVHPNMAQYYEPLKPSKLQRFLTQRKKTNSFMVKVTEYDQDMTLLLMTNNPPPYSIGQQENNGAPIYFPPEFQLKETVYRREPNKNDFLPTMSQKKKLKPVLKPIFPMKRIGDPNFKGQQWFRFSTDKDFKIEGRYSEVHALRKQKKMYPNLIFAPVDQRETRKQVSMKSADETPTSQVLWEPLTFSKLLEEKPTRSVPGESCFRYGRAQQWVVKNAAVIK", "length": 270 }, "evidence": [ { "id": "A0A9J7KDX2", "url": "https://omabrowser.org/oma/group/A0A9J7KDX2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q3T028-1", "protein_name": "Testis-specific gene 13 protein", "gene_name": "TSGA13", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGQRRQTKSQHAKPRTFRTSPVMFEKEIFFDSDEIIDAVGQSKFVLKNLHHYTVHPNLAQYYEPLKPTALQKFLARNRKIQSFTLKVIEYDQDKTLLILTNNPLPCPIDHQGKDVTPKYFSNELLLKESHQHKPTENFFLPLMPQKKNLRSGLKPVFPLMLLEDTKSKREQWFRFSTDNDFKSEGKYSKVYTLRQQKKMYPQLTFASVCKKYMKNDVSKKSGSDSPTSQMIWEPLTLSSLLEKKPTRTAPGESEFRNGRAQQWFIKSATVIK", "length": 272 }, "evidence": [ { "id": "A0A9J7KDX2", "url": "https://omabrowser.org/oma/group/A0A9J7KDX2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q96PP4-1", "protein_name": "Testis-specific gene 13 protein", "gene_name": "TSGA13", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSQKRQTKFQNGKSKTSENSSAKREKGMVVNSKEISDAVGQSKFVLENLRHYTVHPNLAQYYKPLKATALQKFLAQNRKNTSFMLKVTQYDQDKTLLIMTNNPPPCSITQQDKESASKYFSKELLLKVMESHHQHKPTENLWLPRMPQKKKLRSKLKPIFPLILSDDPTSKREQWFRFSTDNDFKSEGKYSKVYALRTQKKMYPQLTFAPVHERDMRKDASKKSASERPISKVIREPLTLASLLEDMPTRTAPGESAFRNGRAPQWIIKKATVIG", "length": 275 }, "evidence": [ { "id": "A0A9J7KDX2", "url": "https://omabrowser.org/oma/group/A0A9J7KDX2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9DA17-1", "protein_name": "Testis-specific gene 13 protein", "gene_name": "Tsga13", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGPKKNSKFQEVSGSKPVGNVSIRFEKQLGQDDEEMYDTTAQSKFVLKNLRHYTVHPNMAKYYEPLKPTKLQRFLTQKKKMNSFMLKVTEYDQDMTLLLMTNNPPPCSISQEKDGAPIYFPPEFQLKETLHRCKPNKNDFFPTMSQKKKLKPELKPVFPMKRLDDPTFKGQQWFRFSTDNDFNIEGKYSEIYALRKQKKMYPNLIFAPASQRETKKHVSMKSESETPTSQVFWEPLTFSKLLEEKPTRSVPGESFFRHGRAQQWIVKDAAVIW", "length": 273 }, "evidence": [ { "id": "A0A9J7KDX2", "url": "https://omabrowser.org/oma/group/A0A9J7KDX2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7K8N5-1", "uniprot_ac": "A0A9J7K8N5", "uniprot_id": "A0A9J7K8N5_CRIGR", "mass": { "chemical_mass": 64162.0, "monoisotopic_mass": 64162.0 }, "refseq": { "ac": "XP_027278027", "name": "fibrous sheath-interacting protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278027" }, "gene_names": [ { "name": "Fsip1", "type": "recommended", "evidence": [ { "id": "A0A9J7K8N5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8N5" } ] }, { "name": "Fsip1", "type": "synonym", "evidence": [ { "id": "XP_027278027", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278027" } ] } ], "protein_names": [ { "name": "Fibrous sheath-interacting protein 1", "type": "recommended", "evidence": [ { "id": "A0A9J7K8N5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8N5/entry#names_and_taxonomy" } ] }, { "name": "fibrous sheath-interacting protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027278027", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278027" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027278027", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278027" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K8N5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8N5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fsip1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8N5", "locus": {} } ], "crossref": [ { "id": "100761745", "url": "https://www.ncbi.nlm.nih.gov/gene/100761745", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026246", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026246", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100761745", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761745", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EPASCKV", "url": "https://omabrowser.org/oma/group/EPASCKV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JSE0", "url": "https://www.orthodb.org/?gene=A0A9J7JSE0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7K8N5", "url": "https://www.orthodb.org/?gene=A0A9J7K8N5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22012", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22012", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22012:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22012:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15554", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15554", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027278027", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278027", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G7D9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7D9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G7D9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7D9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GZI4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZI4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GZI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZI4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H0C6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0C6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H0C6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0C6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JSE0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSE0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JSE0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSE0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K8N5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8N5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K8N5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8N5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSMDIIKGSLDGISKPASSSRSRPGSRSSNASLEVLSPEPGAFKIDTVSKLNFSKEDHSSNSSGEERRCSHDGRWADYYESTKSAKQGSDEDPDLAQQKASKHPDDPKLEGPDAQLQNAIRKMHRLDKILAKRRCREKKVKKQGEEMRTKLWEELKSAKKAEDLENDEELENATEFLYMASKSAETAVEPCEFEDKFFSVFHTQIPPENYEKFLQNIKKDLTCDVGKNETLIETEKKPFSNTERIELRSKLSQDFIKRNIELAKSSRSPVFMIDREKKRLDELLKGLDNTDAGLSSSEGEPCGWLDPGEGYTLAATESQKLAQIDTKLQEFSVVSPTVFSLSPRLESQSNKEPDSDEERDMEPTPGEQILRDSKEQRDQQSRLRAIDGKLRDINEQLNSTVRLSEEQLKCLLEECVSQQKCIPLGLPSERENEGVDASLGPPQLCPPTLCGLLDESEANAQKTQLGDANRLENEGCGPAVDSYLTKALAGHYKPEALIIEVEAMKGLQFPHEGAFNDAADYFMSKTVGIGRLKKPPFLDDPMNDINVNSSSDDQQLKLSHPEEPAVGCIRLWN", "length": 573, "header": "tr|A0A9J7K8N5-1|A0A9J7K8N5_CRIGR Isoform 1 of Fibrous sheath-interacting protein 1 OS=Cricetulus griseus OX=10029 GN=Fsip1 PE=3 SV=1 CANONICAL=A0A9J7K8N5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G7D9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7D9/entry", "sequence": { "sequence": "MSMDIIKGSLDGISKPASSSRSRPGSRSSNASLEVLSPEPGAFKIDTVSKLNFSKEDHSSNSSGEERRCSHDGRWADYYESTKSAKQGSDEDPDLAQQKASKHPDDPKLEGPDAQLQNAIRKMHRLDKILAKRRCREKKVKKQGEEMRTKLWEELKSAKKAEDLENDEELENATEFLYMASKSAETAEPCEFEDKFFSVFHTQIPPENYEKFLQNIKKDLTCDVGKNETLIETEKKPFSNTERIELRSKLSQDFIKRNIELAKSSRSPVFMIDREKKRLDELLKGLDNTDAGLSSSEGEPCGWLDPGEGYTLAATESQKLAQIDTKLQEFSVVSPTVFSLSPRLESQSNKEPDSDEERDMEPTPGEQILRDSKEQRDQQSRLRAIDGKLRDINEQLNSTVRLSEEQLKCLLEECVSQQKCIPLGLPSERENEGVDASLGPPQLCPPTLCGLLDESEANAQKTQLGDANRLENEGCGPAVDSYLTKALAGHYKPEALIIEVEAMKGLQFPHEGAFNDAADYFMSKTVGIGRLKKPPFLDDPMNDINVNSSSDDQQLKLSHPEEPAVGCIRLWN", "length": 572, "header": "tr|A0A9J7G7D9-1|A0A9J7K8N5_CRIGR Computationally mapped isoform of Fibrous sheath-interacting protein 1 OS=Cricetulus griseus OX=10029 GN=Fsip1 PE=3 SV=1 CANONICAL=A0A9J7K8N5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GZI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZI4/entry", "sequence": { "sequence": "MSMDIIKGSLDGISKPASSSRSRPGSRSSNASLEVLSPEPGAFKIDTVSKLNFSKEDHSSNSSGEERRCSHDGRWADYYESTKSAKQGSDEDPDLAQQKASKHPDDPKLEGPDAQLQNAIRKMHRLDKILAKRRCREKKVKKQGEEMRTKLWEELKSAKKAEDLENDEELENATEFLYMASKSAETAVEPCEFEDKFFSVFHTQIPPENYEKFLQNIKKDLTCDVGKNETLIETEKKPFSNTERIELRSKLSQDFIKRNIELAKSSRSPVFMIDREKKRLDELLKGLDNTDAGLSSSEGEPCGWLDPGEGYTLAATESQKLAQIDTKLQEFSVVSPTVFSLSPRLESQSNKEPDSDEERDMEPTPGEQILRDSKEQRDQQSRLRAIDGKLRDINEQRRRMEYRQ", "length": 404, "header": "tr|A0A9J7GZI4-1|A0A9J7GZI4_CRIGR Computationally mapped isoform of Fibrous sheath-interacting protein 1 OS=Cricetulus griseus OX=10029 GN=Fsip1 PE=3 SV=1 CANONICAL=A0A9J7K8N5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H0C6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0C6/entry", "sequence": { "sequence": "MSMDIIKGSLDGISKPASSSRSRPGSRSSNASLEVLSPEPGAFKIDTVSKLNFSKEDHSSNSSGEERRCSHDGRWADYYESTKSAKQGSDEDPDLAQQKASKHPDDPKLEGPDAQLQNAIRKMHRLDKILAKRRCREKKVKKQGEEMRTKLWEELKSAKKAEDLENDEELENATEFLYMASKSAETAVEPCEFEDKFFSVFHTQIPPENYEKFLQNIKKDLTCDVGKNETLIETEKKPFSNTERIELRSKLSQDFIKRNIELAKSSRSPVFMIDREKKRLDELLKGLDNTDAGLSSSEGEPCGWLDPGEGYTLAATESQKLAQIDTKLQEFSVVSPTVFSLSPRLESQSNKEPDSDEERDMEPTPGEQILRDSKEQRDQQSRLRAIDGKLRDINEQVVEFPKITHSKWNVRNNTWRRLLAKILESE", "length": 426, "header": "tr|A0A9J7H0C6-1|A0A9J7H0C6_CRIGR Computationally mapped isoform of Fibrous sheath-interacting protein 1 OS=Cricetulus griseus OX=10029 GN=Fsip1 PE=3 SV=1 CANONICAL=A0A9J7K8N5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JSE0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JSE0/entry", "sequence": { "sequence": "MSMDIIKGSLDGISKPASSSRSRPGSRSSNASLEVLSPEPGAFKIDTVSKLNFSKEDHSSNSSGEERRCSHDGRWADYYESTKSAKQGSDEDPDLAQQKASKHPDDPKLEGPDAQLQNAIRKMHRLDKILAKRRCREKKVKKQGEEMRTKLWEELKSAKKAEDLENDEELENATEFLYMASKSAETAVEPCEFEDKFFSVFHTQIPPENYEKFLQNIKKDLTCDVGKNETLIETEKKPFSNTERIELRSKLSQDFIKRNIELAKSSRSPVFMIDREKKRLDELLKGLDNTDAGLSSSEGEPCGWLDPGEGYTLAATESQKLAQIDTKLQEFSVVSPTVFSLSPRLESQSNKEPDSDEERDMEPTPGEQILRDSKEQRDQQSRLRAIDGKLRDINEQLNSTVRLSEEQLKCLLEECVSQQKCIPLGLPSERENEGVDASLGPPQLCPPTLCGLLDESEANAQKTQLGDANRLENEGCGPAVDSYLTKALAGHYKPEALIIEVEAMKGLQFPHEGAFNDAADYFMSKTVGIGRLKKPPFLDDPMNDINVNSSSDDQQLKLSHPEEPAVADE", "length": 569, "header": "tr|A0A9J7JSE0-1|A0A9J7K8N5_CRIGR Computationally mapped isoform of Fibrous sheath-interacting protein 1 OS=Cricetulus griseus OX=10029 GN=Fsip1 PE=3 SV=1 CANONICAL=A0A9J7K8N5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K8N5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8N5/entry", "sequence": { "sequence": "MSMDIIKGSLDGISKPASSSRSRPGSRSSNASLEVLSPEPGAFKIDTVSKLNFSKEDHSSNSSGEERRCSHDGRWADYYESTKSAKQGSDEDPDLAQQKASKHPDDPKLEGPDAQLQNAIRKMHRLDKILAKRRCREKKVKKQGEEMRTKLWEELKSAKKAEDLENDEELENATEFLYMASKSAETAVEPCEFEDKFFSVFHTQIPPENYEKFLQNIKKDLTCDVGKNETLIETEKKPFSNTERIELRSKLSQDFIKRNIELAKSSRSPVFMIDREKKRLDELLKGLDNTDAGLSSSEGEPCGWLDPGEGYTLAATESQKLAQIDTKLQEFSVVSPTVFSLSPRLESQSNKEPDSDEERDMEPTPGEQILRDSKEQRDQQSRLRAIDGKLRDINEQLNSTVRLSEEQLKCLLEECVSQQKCIPLGLPSERENEGVDASLGPPQLCPPTLCGLLDESEANAQKTQLGDANRLENEGCGPAVDSYLTKALAGHYKPEALIIEVEAMKGLQFPHEGAFNDAADYFMSKTVGIGRLKKPPFLDDPMNDINVNSSSDDQQLKLSHPEEPAVGCIRLWN", "length": 573, "header": "tr|A0A9J7K8N5-1|A0A9J7K8N5_CRIGR Isoform 1 of Fibrous sheath-interacting protein 1 OS=Cricetulus griseus OX=10029 GN=Fsip1 PE=3 SV=1 CANONICAL=A0A9J7K8N5-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 364, "start_aa": "Thr", "end_pos": 364, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr364", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7D9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7D9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7G7D9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7D9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100761745", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761745", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q66H16-1", "protein_name": "Fibrous sheath-interacting protein 1", "gene_name": "Fsip1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSMDIIKGNLDGISKPASSSRSRPGSRSSNGSLEVLSPEPGPVKIDMVNKLNSGKEGHTSDSRVEERRKISDDEWADNPRSTEPAQESSDEDSNLSQPQGTPEHSDDPKLEGTDAVLQNAIHKMHRLDKILAKRRIREKEIKKQGLEMRIKLWEELKSAKNTEDLENDEELENTKKFLYLTSKSAGTAAEPLHCKFEDDLFSVFHTQIPQETYENHTEKDFTCDVEKNGPLIKTEKQPFSNTEAIEPRSEHSQVFIIRNAEHSQDFIKRNIELAKSSRSPVVMVEGEKKRLDELLKGLEDTDSGLSSSEGDQCAWLVPGEGYTLAATESQQLAEIDIKLQELSVDSPAVFSLESQSNKGDMEHDSNEERNTEPTPGEKILRDNKEQRDRESRLRAIDGKLKEINEQVEECPVITPGKRNERITWRWLLAKILEPECKV", "length": 438 }, "evidence": [ { "id": "A0A9J7K8N5", "url": "https://omabrowser.org/oma/group/A0A9J7K8N5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8NA03-1", "protein_name": "Fibrous sheath-interacting protein 1", "gene_name": "FSIP1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDIIKGNLDGISKPASNSRIRPGSRSSNASLEVLSTEPGSFKVDTASNLNSGKEDHSESSNTENRRTSNDDKQESCSEKIKLAEEGSDEDLDLVQHQIISECSDEPKLKELDSQLQDAIQKMKKLDKILAKKQRREKEIKKQGLEMRIKLWEEIKSAKYSEAWQSKEEMENTKKFLSLTAVSEETVGPSHEEEDTFSSVFHTQIPPEEYEMQMQKLNKDFTCDVERNESLIKSGKKPFSNTEKIELRGKHNQDFIKRNIELAKESRNPVVMVDREKKRLVELLKDLDEKDSGLSSSEGDQSGWVVPVKGYELAVTQHQQLAEIDIKLQELSAASPTISSFSPRLENRNNQKPDRDGERNMEVTPGEKILRNTKEQRDLHNRLREIDEKLKMMKENVLESTSCLSEEQLKCLLDECILKQKSIIKLSSERKKEDIEDVTPVFPQLSRSIISKLLNESETKVQKTEVEDADMLESEECEASKGYYLTKALTGHNMSEALVTEAENMKCLQFSKDVIISDTKDYFMSKTLGIGRLKRPSFLDDPLYGISVSLSSEDQHLKLSSPENTIADEQETKDAAEECKEP", "length": 581 }, "evidence": [ { "id": "A0A9J7K8N5", "url": "https://omabrowser.org/oma/group/A0A9J7K8N5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D3V5-1", "protein_name": "Fibrous sheath-interacting protein 1", "gene_name": "Fsip1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPMDIIKGNLDGISKPASSSRSRPGSRSSNGSLEVLTPEPGSVKIDMVNKLNSGQEGHTSNSGVEERRNSNDAKWADDSKTKPAKESSDEDPDMPQPQATPEHSDDPKLEETNAVLQNAIRKMHRLDKLLAKKQCREKEVKKQGLEMRVKLWEELKSAKNTEDLENDEELGNTKKFLCLTSESAGKAAAEALHCEFEDALFSVFHTQIPPETYENLMEKDFTCDVEKNEPLIITEKQPFSNTEAIEPRSEDSQGFIRQNAEHSQDFIKRNIELAKHSRSPVVMVEGEKKRLDELLQGLDDADSGLSSAEGDQCGWLVPGEGYTLAATESQQLAEIDIKLQELSVDSPTIFSLESQSHKGDMECDANEERNTEPTPGEKILRDRKEQRDRESRLRAIDGKLKELSEQVEECPMITPSKRNERITWRWLLAKILEPE", "length": 435 }, "evidence": [ { "id": "A0A9J7K8N5", "url": "https://omabrowser.org/oma/group/A0A9J7K8N5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 172, "end_pos": 174, "annotation": "n_glycosylation_sequon" }, { "start_pos": 228, "end_pos": 230, "annotation": "n_glycosylation_sequon" }, { "start_pos": 30, "end_pos": 32, "annotation": "n_glycosylation_sequon" }, { "start_pos": 398, "end_pos": 400, "annotation": "n_glycosylation_sequon" }, { "start_pos": 52, "end_pos": 54, "annotation": "n_glycosylation_sequon" }, { "start_pos": 548, "end_pos": 550, "annotation": "n_glycosylation_sequon" }, { "start_pos": 61, "end_pos": 63, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 364 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 172, "end_pos": 174 }, { "start_pos": 228, "end_pos": 230 }, { "start_pos": 30, "end_pos": 32 }, { "start_pos": 398, "end_pos": 400 }, { "start_pos": 52, "end_pos": 54 }, { "start_pos": 548, "end_pos": 550 }, { "start_pos": 61, "end_pos": 63 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7KAB7-1", "uniprot_ac": "A0A9J7KAB7", "uniprot_id": "A0A9J7KAB7_CRIGR", "mass": { "chemical_mass": 141524.0, "monoisotopic_mass": 141524.0 }, "refseq": { "ac": "XP_027278696", "name": "apical endosomal glycoprotein isoform X6", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278696" }, "gene_names": [ { "name": "Mamdc4", "type": "recommended", "evidence": [ { "id": "A0A9J7KAB7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAB7" } ] }, { "name": "Mamdc4", "type": "synonym", "evidence": [ { "id": "XP_027278696", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278696" } ] } ], "protein_names": [ { "name": "Apical endosomal glycoprotein isoform X6", "type": "synonym", "evidence": [ { "id": "A0A9J7KAB7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAB7/entry#names_and_taxonomy" } ] }, { "name": "apical endosomal glycoprotein isoform X6", "type": "synonym", "evidence": [ { "id": "XP_027278696", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278696" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027278696", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278696" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KAB7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAB7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Mamdc4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAB7", "locus": {} } ], "crossref": [ { "id": "cd00112", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00112", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06263", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06263", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100761809", "url": "https://www.ncbi.nlm.nih.gov/gene/100761809", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000998", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000998", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002172", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002172", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023415", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023415", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036055", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036055", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051560", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051560", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100761809", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761809", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GCN1", "url": "https://www.orthodb.org/?gene=A0A9J7GCN1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7KAB7", "url": "https://www.orthodb.org/?gene=A0A9J7KAB7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23282", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23282", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23282:SF129", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23282:SF129", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00057", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00057", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00629", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00629", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027278696", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027278696", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7G7X8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7X8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7G7X8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7X8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GA12", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA12", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GA12-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA12-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GA18", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA18", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GA18-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA18-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GCN1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCN1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GCN1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCN1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H0V2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0V2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H0V2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0V2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JW64", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JW64", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JW64-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JW64-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K8W6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8W6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K8W6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8W6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KAB7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAB7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KAB7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAB7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCVCVCVCVCVCVCVCVCLKSKSSHHLALHSLGYSLPAAQSLGKTWVPSHCRSPIEAVCNFVCDCGDCSDEAQCGFHGALTTLSTPFTCNFEQDPCGWQDISTSGYRWLRDRAGAVLDSPGPRSDHTHGTDLGWYMAVGTHHGKEASTATLRSPVMREAAPTCELRLWYHTASRDIAELRLELTHGVETLTLWQSSGPWGPGWQELVVNTGRVQGDFKVTFSATRNATHRGAVALDDVEFRDCGLPTPQASCPLGHHHCQNKVCVESHQLCDGEDNCGDRSDEDPLICSHHMATDFETGLGPWNQLEGWTRNYSAGSMVTPAWPHRDHSRNSAYGFFLISVAKPGTTAVLFSPEFQASISDNCSFTFYYYLHGSEASRFQLFLQAQGLNTPQEPVLLRSHHGELGTAWVRDRVDIQSVHPFRILLAGKTGPGGIMGLDDLIMSNSCRLVPDMSTLQSSRSGPEALALSPQTFIKLPQEACKPGHLSCGELCVPPEQLCDFQQQCAEGEDEQKCGTTDFESTSAGGWEDISVGKLQWQRLGAQNGKPAKDAHQDIPGHFLSLQKAWGQLRSEARALTPALGPSGPRCELHMAYYFHSHPQGTICLLAPGPIPRGPLHGGQDLRTHPYKLPWSGFLALVVVENGFRELVWQAPSSSSGGWTVEKVLLGARHRPFQLEFVGLVDLDGPGQQRAEVDNVTMRDCNPTVTTESDQEVSCNFERDSCSWHTVHLTDAHWHRVKGHGSEYDHTTGQGFFMFLDPTDPPARGQAAVLLTRPQVPLVPKECLSFWYHLYGPQIGTLHLAMRKDGEEDTLLWSRSGTHGNHWHQAWVTLHHQLEVNTKYQGWPQPITTLHPQLLFEGLRNGYHGTMALDDVAVRPGPCWAPRSCSFEDSDCGFSPGGLGLWKRQGNASGYVPWGPWTDHTTETAQGHYMVVDTSPNVLPKGQVASLTSEEHQPLTQPACLTFWYHLSLHNPGTLRVHVEESTRRQELSISAHGGFTWRLGSVNVQATQAWRVVFEAVAAGVEHSYMALDDLLLRDGPCAQPGSCDFESGLCGWSHLAWPSLGGYSWDWSSGATPSRYPRPTVDHTLGTEAGHFAFFETSVLGPGGQAAWLRSEPLPATTASCLHFWYYMGFPEHFYKGKLRVLLSSAQGQLAVWEQGSHLRHQWIQVQIKVSNSEEFQIVFEATLGGQPALGPIALDDVQYLAGQHCQKPPSSQGEMAAPVSVPVAVGGALLFFVFLVLLGLGSWHWLQKQRCPFQRSTDTATSSFDNILFNADQVTLPESITSSS", "length": 1286, "header": "tr|A0A9J7KAB7-1|A0A9J7KAB7_CRIGR Isoform 1 of Apical endosomal glycoprotein isoform X6 OS=Cricetulus griseus OX=10029 GN=Mamdc4 PE=4 SV=1 CANONICAL=A0A9J7KAB7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7G7X8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7X8/entry", "sequence": { "sequence": "MCVCVCVCVCVCVCVCVCLKSKSSHHLALHSLGYSLPAAQSLGKTWVPSHCRSPIEAVCNFVCDCGDCSDEAQCGFHGALTTLSTPFTCNFEQDPCGWQDISTSGYRWLRDRAGAVLDSPGPRSDHTHGTDLGWYMAVGTHHGKEASTATLRSPVMREAAPTCELRLWYHTASRDIAELRLELTHGVETLTLWQSSGPWGPGWQELVVNTGRVQGDFKVTFSATRNATHRGAVALDDVEFRDCGLPTPQASCPLGHHHCQNKVCVESHQLCDGEDNCGDRSDEDPLICSHHMATDFETGLGPWNQLEGWTRNYSAGSMVTPAWPHRDHSRNSAYGFFLISVAKPGTTAVLFSPEFQASISDNCSFTFYYYLHGSEASRFQLFLQAQGLNTPQEPVLLRSHHGELGTAWVRDRVDIQSVHPFRILLAGKTGPGGIMGLDDLIMSNSCRLVPDMSTLQSSRSGPEALALSPQTFIKLPQEACKPGHLSCGELCVPPEQLCDFQQQCAEGEDEQKCGTTDFESTSAGGWEDISVGKLQWQRLGAQNGKPAKDAHQDIPGHFLSLQKAWGQLRSEARALTPALGPSGPRCELHMAYYFHSHPQGFLALVVVENGFRELVWQAPSSSSGGWTVEKVLLGARHRPFQLEFVGLVDLDGPGQQRAEVDNVTMRDCNPTVTTESDQEVSCNFERDSCSWHTVHLTDAHWHRVKGHGSEYDHTTGQGFFMFLDPTDPPARGQAAVLLTRPQVPLVPKECLSFWYHLYGPQIGTLHLAMRKDGEEDTLLWSRSGTHGNHWHQAWVTLHHQLEVNTKYQLLFEGLRNGYHGTMALDDVAVRPGPCWAPRSCSFEDSDCGFSPGGLGLWKRQGNASGYVPWGPWTDHTTETAQGHYMVVDTSPNVLPKGQVASLTSEEHQPLTQPACLTFWYHLSLHNPGTLRVHVEESTRRQELSISAHGGFTWRLGSVNVQATQAWRVVFEAVAAGVEHSYMALDDLLLRDGPCAQPGSCDFESGLCGWSHLAWPSLGGYSWDWSSGATPSRYPRPTVDHTLGTEAGHFAFFETSVLGPGGQAAWLRSEPLPATTASCLHFWYYMGFPEHFYKGKLRVLLSSAQGQLAVWEQGSHLRHQWIQVQIKVSNSEEFQIVFEATLGGQPALGPIALDDVQYLAGQHCQKPPSSQGEMAAPVSVPVAVGGALLFFVFLVLLGLGSWHWLQKQRCPFQRSTDTATSSFDNILFNADQVTLPESITSSS", "length": 1242, "header": "tr|A0A9J7G7X8-1|A0A9J7KAB7_CRIGR Computationally mapped isoform of Apical endosomal glycoprotein isoform X6 OS=Cricetulus griseus OX=10029 GN=Mamdc4 PE=4 SV=1 CANONICAL=A0A9J7KAB7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GA12-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA12/entry", "sequence": { "sequence": "MYLPSHLLSTLVLLMAAQSLGKTWVPSHCRSPIEAVCNFVCDCGDCSDEAQCGFHGALTTLSTPFTCNFEQDPCGWQDISTSGYRWLRDRAGAVLDSPGPRSDHTHGTDLGWYMAVGTHHGKEASTATLRSPVMREAAPTCELRLWYHTASRDIAELRLELTHGVETLTLWQSSGPWGPGWQELVVNTGRVQGDFKVTFSATRNATHRGAVALDDVEFRDCGLPTPQASCPLGHHHCQNKVCVESHQLCDGEDNCGDRSDEDPLICSHHMATDFETGLGPWNQLEGWTRNYSAGSMVTPAWPHRDHSRNSAYGFFLISVAKPGTTAVLFSPEFQASISDNCSFTFYYYLHGSEASRFQLFLQAQGLNTPQEPVLLRSHHGELGTAWVRDRVDIQSVHPFRILLAGKTGPGGIMGLDDLIMSNSCRLVPDMSTLQSSRSGPEALALSPQTFIKLPQEACKPGHLSCGELCVPPEQLCDFQQQCAEGEDEQKCGTTDFESTSAGGWEDISVGKLQWQRLGAQNGKPAKDAHQDIPGHFLSLQKAWGQLRSEARALTPALGPSGPRCELHMAYYFHSHPQGTICLLAPGPIPRGPLHGGQDLRTHPYKLPWSGFLALVVVENGFRELVWQAPSSSSGGWTVEKVLLGARHRPFQLEFVGLVDLDGPGQQRAEVDNVTMRDCNPTVTTESDQEVSCNFERDSCSWHTVHLTDAHWHRVKGHGSEYDHTTGQGFFMFLDPTDPPARGQAAVLLTRPQVPLVPKECLSFWYHLYGPQIGTLHLAMRKDGEEDTLLWSRSGTHGNHWHQAWVTLHHQLEVNTKYQGWPQPITTLHPQLLFEGLRNGYHGTMALDDVAVRPGPCWAPRSCSFEDSDCGFSPGGLGLWKRQGNASGYVPWGPWTDHTTETAQGHYMVVDTSPNVLPKGQVASLTSEEHQPLTQPACLTFWYHLSLHNPGTLRVHVEESTRRQELSISAHGGFTWRLGSVNVQATQAWRVVFEAVAAGVEHSYMALDDLLLRDGPCAQPGSCDFESGLCGWSHLAWPSLGGYSWDWSSGATPSRYPRPTVDHTLGTEAGHFAFFETSVLGPGGQAAWLRSEPLPATTASCLHFWYYMGFPEHFYKGKLRVLLSSAQGQLAVWEQGSHLRHQWIQVQIKVSNSEEFQIVFEATLGGQPALGPIALDDVQYLAGQHCQKPPSSQGEMAAPVSVPVAVGGALLFFVFLVLLGLGSWHWLQKQRCPFQRSTDTATSSFDNILFNADQVTLPESITSSS", "length": 1264, "header": "tr|A0A9J7GA12-1|A0A9J7KAB7_CRIGR Computationally mapped isoform of Apical endosomal glycoprotein isoform X6 OS=Cricetulus griseus OX=10029 GN=Mamdc4 PE=4 SV=1 CANONICAL=A0A9J7KAB7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GA18-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GA18/entry", "sequence": { "sequence": "MCVCVCVCVCVCVCVCVCLKSKSSHHLALHSLGYSLPAAQSLGKTWVPSHCRSPIEAVCNFVCDCGDCSDEAQCGFHGALTTLSTPFTCNFEQDPCGWQDISTSGYRWLRDRAGAVLDSPGPRSDHTHGTDLGWYMAVGTHHGKEASTATLRSPVMREAAPTCELRLWYHTASRDIAELRLELTHGVETLTLWQSSGPWGPGWQELVVNTGRVQGDFKVTFSATRNATHRGAVALDDVEFRDCGLPTPQASCPLGHHHCQNKVCVESHQLCDGEDNCGDRSDEDPLICSHHMATDFETGLGPWNQLEGWTRNYSAGSMVTPAWPHRDHSRNSAYGFFLISVAKPGTTAVLFSPEFQASISDNCSFTFYYYLHGSEASRFQLFLQAQGLNTPQEPVLLRSHHGELGTAWVRDRVDIQSVHPFRILLAGKTGPGGIMGLDDLIMSNSCRLVPDMSTLQSSRSGPEALALSPQTFIKLPQEACKPGHLSCGELCVPPEQLCDFQQQCAEGEDEQKCGTTDFESTSAGGWEDISVGKLQWQRLGAQNGKPAKDAHQDIPGHFLSLQKAWGQLRSEARALTPALGPSGPRCELHMAYYFHSHPQGFLALVVVENGFRELVWQAPSSSSGGWTVEKVLLGARHRPFQLEFVGLVDLDGPGQQRAEVDNVTMRDCNPTVTTESDQEVSCNFERDSCSWHTVHLTDAHWHRVKGHGSEYDHTTGQGFFMFLDPTDPPARGQAAVLLTRPQVPLVPKECLSFWYHLYGPQIGTLHLAMRKDGEEDTLLWSRSGTHGNHWHQAWVTLHHQLEVNTKYQGWPQPITTLHPQLLFEGLRNGYHGTMALDDVAVRPGPCWAPRSCSFEDSDCGFSPGGLGLWKRQGNASGYVPWGPWTDHTTETAQGHYMVVDTSPNVLPKGQVASLTSEEHQPLTQPACLTFWYHLSLHNPGTLRVHVEESTRRQELSISAHGGFTWRLGSVNVQATQAWRVVFEAVAAGVEHSYMALDDLLLRDGPCAQPGSCDFESGLCGWSHLAWPSLGGYSWDWSSGATPSRYPRPTVDHTLGTEAGHFAFFETSVLGPGGQAAWLRSEPLPATTASCLHFWYYMGFPEHFYKGKLRVLLSSAQGQLAVWEQGSHLRHQWIQVQIKVSNSEEFQIVFEATLGGQPALGPIALDDVQYLAGQHCQKPPSSQGEMAAPVSVPVAVGGALLFFVFLVLLGLGSWHWLQKQRCPFQRSTDTATSSFDNILFNADQVTLPESITSSS", "length": 1254, "header": "tr|A0A9J7GA18-1|A0A9J7KAB7_CRIGR Computationally mapped isoform of Apical endosomal glycoprotein isoform X6 OS=Cricetulus griseus OX=10029 GN=Mamdc4 PE=4 SV=1 CANONICAL=A0A9J7KAB7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GCN1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GCN1/entry", "sequence": { "sequence": "MYLPSHLLSTLVLLMAAQSLGKTWVPSHCRSPIEAVCNFVCDCGDCSDEAQCGFHGALTTLSTPFTCNFEQDPCGWQDISTSGYRWLRDRAGAVLDSPGPRSDHTHGTDLGWYMAVGTHHGKEASTATLRSPVMREAAPTCELRLWYHTASRDIAELRLELTHGVETLTLWQSSGPWGPGWQELVVNTGRVQGDFKVTFSATRNATHRGAVALDDVEFRDCGLPTPQASCPLGHHHCQNKVCVESHQLCDGEDNCGDRSDEDPLICSHHMATDFETGLGPWNQLEGWTRNYSAGSMVTPAWPHRDHSRNSAYGFFLISVAKPGTTAVLFSPEFQASISDNCSFTFYYYLHGSEASRFQLFLQAQGLNTPQEPVLLRSHHGELGTAWVRDRVDIQSVHPFRILLAGKTGPGGIMGLDDLIMSNSCRLVPDMSTLQSSRSGPEALALSPQTFIKLPQEACKPGHLSCGELCVPPEQLCDFQQQCAEGEDEQKCGTTDFESTSAGGWEDISVGKLQWQRLGAQNGKPAKDAHQDIPGHFLSLQKAWGQLRSEARALTPALGPSGPRCELHMAYYFHSHPQGFLALVVVENGFRELVWQAPSSSSGGWTVEKVLLGARHRPFQLEFVGLVDLDGPGQQRAEVDNVTMRDCNPTVTTESDQEVSCNFERDSCSWHTVHLTDAHWHRVKGHGSEYDHTTGQGFFMFLDPTDPPARGQAAVLLTRPQVPLVPKECLSFWYHLYGPQIGTLHLAMRKDGEEDTLLWSRSGTHGNHWHQAWVTLHHQLEVNTKYQLLFEGLRNGYHGTMALDDVAVRPGPCWAPRSCSFEDSDCGFSPGGLGLWKRQGNASGYVPWGPWTDHTTETAQGHYMVVDTSPNVLPKGQVASLTSEEHQPLTQPACLTFWYHLSLHNPGTLRVHVEESTRRQELSISAHGGFTWRLGSVNVQATQAWRVVFEAVAAGVEHSYMALDDLLLRDGPCAQPGSCDFESGLCGWSHLAWPSLGGYSWDWSSGATPSRYPRPTVDHTLGTEAGHFAFFETSVLGPGGQAAWLRSEPLPATTASCLHFWYYMGFPEHFYKGKLRVLLSSAQGQLAVWEQGSHLRHQWIQVQIKVSNSEEFQIVFEATLGGQPALGPIALDDVQYLAGQHCQKPPSSQGEMAAPVSVPVAVGGALLFFVFLVLLGLGSWHWLQKQRCPFQRSTDTATSSFDNILFNADQVTLPESITSSS", "length": 1220, "header": "tr|A0A9J7GCN1-1|A0A9J7KAB7_CRIGR Computationally mapped isoform of Apical endosomal glycoprotein isoform X6 OS=Cricetulus griseus OX=10029 GN=Mamdc4 PE=4 SV=1 CANONICAL=A0A9J7KAB7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H0V2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0V2/entry", "sequence": { "sequence": "MYLPSHLLSTLVLLMGFHGALTTLSTPFTCNFEQDPCGWQDISTSGYRWLRDRAGAVLDSPGPRSDHTHGTDLGWYMAVGTHHGKEASTATLRSPVMREAAPTCELRLWYHTASRDIAELRLELTHGVETLTLWQSSGPWGPGWQELVVNTGRVQGDFKVTFSATRNATHRGAVALDDVEFRDCGLPTPQASCPLGHHHCQNKVCVESHQLCDGEDNCGDRSDEDPLICSHHMATDFETGLGPWNQLEGWTRNYSAGSMVTPAWPHRDHSRNSAYGFFLISVAKPGTTAVLFSPEFQASISDNCSFTFYYYLHGSEASRFQLFLQAQGLNTPQEPVLLRSHHGELGTAWVRDRVDIQSVHPFRILLAGKTGPGGIMGLDDLIMSNSCRLVPDMSTLQSSRSGPEALALSPQTFIKLPQEACKPGHLSCGELCVPPEQLCDFQQQCAEGEDEQKCGTTDFESTSAGGWEDISVGKLQWQRLGAQNGKPAKDAHQDIPGHFLSLQKAWGQLRSEARALTPALGPSGPRCELHMAYYFHSHPQGTICLLAPGPIPRGPLHGGQDLRTHPYKLPWSGFLALVVVENGFRELVWQAPSSSSGGWTVEKVLLGARHRPFQLEFVGLVDLDGPGQQRAEVDNVTMRDCNPTVTTESDQEVSCNFERDSCSWHTVHLTDAHWHRVKGHGSEYDHTTGQGFFMFLDPTDPPARGQAAVLLTRPQVPLVPKECLSFWYHLYGPQIGTLHLAMRKDGEEDTLLWSRSGTHGNHWHQAWVTLHHQLEVNTKYQGWPQPITTLHPQLLFEGLRNGYHGTMALDDVAVRPGPCWAPRSCSFEDSDCGFSPGGLGLWKRQGNASGYVPWGPWTDHTTETAQGHYMVVDTSPNVLPKGQVASLTSEEHQPLTQPACLTFWYHLSLHNPGTLRVHVEESTRRQELSISAHGGFTWRLGSVNVQATQAWRVVFEAVAAGVEHSYMALDDLLLRDGPCAQPGSCDFESGLCGWSHLAWPSLGGYSWDWSSGATPSRYPRPTVDHTLGTEAGHFAFFETSVLGPGGQAAWLRSEPLPATTASCLHFWYYMGFPEHFYKGKLRVLLSSAQGQLAVWEQGSHLRHQWIQVQIKVSNSEEFQIVFEATLGGQPALGPIALDDVQYLAGQHCQKPPSSQGEMAAPVSVPVAVGGALLFFVFLVLLGLGSWHWLQKQRCPFQRSTDTATSSFDNILFNADQVTLPESITSSS", "length": 1227, "header": "tr|A0A9J7H0V2-1|A0A9J7H0V2_CRIGR Computationally mapped isoform of Apical endosomal glycoprotein isoform X11 OS=Cricetulus griseus OX=10029 GN=Mamdc4 PE=4 SV=1 CANONICAL=A0A9J7KAB7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JW64-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JW64/entry", "sequence": { "sequence": "MCVCVCVCVCVCVCVCVCLKSKSSHHLALHSLGYSLPAAQSLGKTWVPSHCRSPIEAVCNFVCDCGDCSDEAQCGFHGALTTLSTPFTCNFEQDPCGWQDISTSGYRWLRDRAGAVLDSPGPRSDHTHGTDLGWYMAVGTHHGKEASTATLRSPVMREAAPTCELRLWYHTASRDIAELRLELTHGVETLTLWQSSGPWGPGWQELVVNTGRVQGDFKVTFSATRNATHRGAVALDDVEFRDCGLPTPQASCPLGHHHCQNKVCVESHQLCDGEDNCGDRSDEDPLICSHHMATDFETGLGPWNQLEGWTRNYSAGSMVTPAWPHRDHSRNSAYGFFLISVAKPGTTAVLFSPEFQASISDNCSFTFYYYLHGSEASRFQLFLQAQGLNTPQEPVLLRSHHGELGTAWVRDRVDIQSVHPFRILLAGKTGPGGIMGLDDLIMSNSCRLVPDMSTLQSSRSGPEALALSPQTFIKLPQEACKPGHLSCGELCVPPEQLCDFQQQCAEGEDEQKCGTTDFESTSAGGWEDISVGKLQWQRLGAQNGKPAKDAHQDIPGHFLSLQKAWGQLRSEARALTPALGPSGPRCELHMAYYFHSHPQGTICLLAPGPIPRGPLHGGQDLRTHPYKLPWSGFLALVVVENGFRELVWQAPSSSSGGWTVEKVLLGARHRPFQLEFVGLVDLDGPGQQRAEVDNVTMRDCNPTVTTESDQEVSCNFERDSCSWHTVHLTDAHWHRVKGHGSEYDHTTGQGFFMFLDPTDPPARGQAAVLLTRPQVPLVPKECLSFWYHLYGPQIGTLHLAMRKDGEEDTLLWSRSGTHGNHWHQAWVTLHHQLEVNTKYQLLFEGLRNGYHGTMALDDVAVRPGPCWAPRSCSFEDSDCGFSPGGLGLWKRQGNASGYVPWGPWTDHTTETAQGHYMVVDTSPNVLPKGQVASLTSEEHQPLTQPACLTFWYHLSLHNPGTLRVHVEESTRRQELSISAHGGFTWRLGSVNVQATQAWRVVFEAVAAGVEHSYMALDDLLLRDGPCAQPGSCDFESGLCGWSHLAWPSLGGYSWDWSSGATPSRYPRPTVDHTLGTEAGHFAFFETSVLGPGGQAAWLRSEPLPATTASCLHFWYYMGFPEHFYKGKLRVLLSSAQGQLAVWEQGSHLRHQWIQVQIKVSNSEEFQIVFEATLGGQPALGPIALDDVQYLAGQHCQKPPSSQGEMAAPVSVPVAVGGALLFFVFLVLLGLGSWHWLQKQRCPFQRSTDTATSSFDNILFNADQVTLPESITSSS", "length": 1274, "header": "tr|A0A9J7JW64-1|A0A9J7KAB7_CRIGR Computationally mapped isoform of Apical endosomal glycoprotein isoform X6 OS=Cricetulus griseus OX=10029 GN=Mamdc4 PE=4 SV=1 CANONICAL=A0A9J7KAB7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K8W6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8W6/entry", "sequence": { "sequence": "MCVCVCVCVCVCVCVCVCLKSKSSHHLALHSLGYSLPAAQSLGKTWVPSHCRSPIEAVCNFVCDCGDCSDEAQCGFHGALTTLSTPFTCNFEQDPCGWQDISTSGYRWLRDRAGAVLDSPGPRSDHTHGTDLGWYMAVGTHHGKEASTATLRSPVMREAAPTCELRLWYHTASRDIAELRLELTHGVETLTLWQSSGPWGPGWQELVVNTGRVQGDFKVTFSATRNATHRGAVALDDVEFRDCGLPTPQASCPLGHHHCQNKVCVESHQLCDGEDNCGDRSDEDPLICSHHMATDFETGLGPWNQLEGWTRNYSAGSMVTPAWPHRDHSRNSAYGFFLISVAKPGTTAVLFSPEFQASISDNCSFTFYYYLHGSEASRFQLFLQAQGLNTPQEPVLLRSHHGELGTAWVRDRVDIQSVHPFRILLAGKTGPGGIMGLDDLIMSNSCRLVPDMSTLQSSRSGPEALALSPQTFIKLPQEACKPGHLSCGELCVPPEQLCDFQQQCAEGEDEQKCGTTDFESTSAGGWEDISVGKLQWQRLGAQNGKPAKDAHQDIPGHFLSLQKAWGQLRSEARALTPALGPSGPRCELHMAYYFHSHPQGTICLLAPGPIPRGPLHGGQDLRTHPYKLPWSGFLALVVVENGFRELVWQAPSSSSGGWTVEKVLLGARHRPFQLEFVGLVDLDGPGQQRAEVDNVTMRDCNPTVTTESDQEVSCNFERDSCSWHTVHLTDAHWHRVKGHGSEYDHTTGQGFFMFLDPTDPPARGQAAVLLTRPQVPLVPKECLSFWYHLYGPQIGTLHLAMRKDGEEDTLLWSRSGTHGNHWHQAWVTLHHQLEVNTKYQPITTLHPQLLFEGLRNGYHGTMALDDVAVRPGPCWAPRSCSFEDSDCGFSPGGLGLWKRQGNASGYVPWGPWTDHTTETAQGHYMVVDTSPNVLPKGQVASLTSEEHQPLTQPACLTFWYHLSLHNPGTLRVHVEESTRRQELSISAHGGFTWRLGSVNVQATQAWRVVFEAVAAGVEHSYMALDDLLLRDGPCAQPGSCDFESGLCGWSHLAWPSLGGYSWDWSSGATPSRYPRPTVDHTLGTEAGHFAFFETSVLGPGGQAAWLRSEPLPATTASCLHFWYYMGFPEHFYKGKLRVLLSSAQGQLAVWEQGSHLRHQWIQVQIKVSNSEEFQIVFEATLGGQPALGPIALDDVQYLAGQHCQKPPSSQGEMAAPVSVPVAVGGALLFFVFLVLLGLGSWHWLQKQRCPFQRSTDTATSSFDNILFNADQVTLPESITSSS", "length": 1282, "header": "tr|A0A9J7K8W6-1|A0A9J7K8W6_CRIGR Computationally mapped isoform of Apical endosomal glycoprotein isoform X7 OS=Cricetulus griseus OX=10029 GN=Mamdc4 PE=4 SV=1 CANONICAL=A0A9J7KAB7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KAB7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAB7/entry", "sequence": { "sequence": 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This record is derived from a genomic sequence (NC_048601.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035304434", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304434" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KCA7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCA7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Herc6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCA7", "locus": {} } ], "crossref": [ { "id": "A0A9J7KCA7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KCA7", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00078", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00078", "database": "CDD", "categories": [ "Protein Classification" ] }, 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"Protein" ] }, { "id": "A0A9J7GIV0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIV0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H446", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H446", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H446-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H446-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H550", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H550", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H550-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H550-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H696", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H696", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H696-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H696-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H744", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H744", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H744-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H744-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H880", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H880", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H880-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H880-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KCA7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCA7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KCA7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCA7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYFHWAADSRQPRRLNGRDGLELLQAASGERHSLLLFSNHRVYSCGDNSLGQLGQKREQNTEQPEPIQALGTLDIDLVSCGKEHSIAVCHKGRVFAWGAGSEGQLGIGEFKEINLMPMRIKTLGGIKIIQVSCGHYHSLALSEDGQVFSWGKNSQGQLGLGMQSSSQASPQKVTSLEGIPLAQVAAGGSHSFALSLTGTSYGWGSNSVGQLALSGENSTVCFLSEVQISKPHSIDALKNLGVIYISCGYEHTAVLTKDGQVFTFGDNSSGQLQNNPRGKRRGPQLVEGIKGQVSKIECGSYHTIAYVYTTGQVVSLGHGPRPTSNPTHQKAPAESSDIICLLSAADLVDVKVKDIFAGAYANFATTHRVSHARSKSVSMKILPEISRINQSLAKKWIAAKINKELAEAKREINLIFSSSACLTASFLKKRDTREENFVDVDLTMARNVFKKLTAVKWISPLITTCLEDNLLGDLPCHSQHQDALLIFLLLPECPLMQNNRNWKTLTVKFAKAICKMNKESLAFLRKCWASLEASSLDTVVQMLKRAITIISQLHDPYSKIQHQCDLKALLEVMKHVHKANHQLPESTFVIHELSHMLNPDAEICKLLLRHNSFVPELPNLVVFSDFLFSFDLPFKIKLMKCDSSAKLKFEAMASQGRMRTFLTLEVRRSHLVEDTMRQLRQAEFSDLKKPLVVEFIKEICFEAGGVTSEFFHCIFEEMTAPKYEMFMYPEKSSCMWFPVNPKFENKDYFFFGVLCGLSLSNVKVVNLPFPLALYKKLLKQKPSLEDLKELSFPLGKSLQEVLNCEAGDVEELHIHFSIHWDKKDVNLIPNGISVPVNETNKQDYVSKCVDYIFNTSVKTIYKEFYRGFYTVCNLDIIRQFQPEELKTAITGNDNCDWKQFENNSLYEREYHKSHPTILLFWKAFHKLTLDEKKKFLLFLTGSDRLHVKGLQYEGIRFRCPQTLTEDDNPRSLTCHSILDLPKYSTMERMEEALQVAINSNKGFVSQR", "length": 1007, "header": "tr|A0A9J7KCA7-1|A0A9J7KCA7_CRIGR Isoform 1 of Probable E3 ubiquitin-protein ligase HERC6 isoform X4 OS=Cricetulus griseus OX=10029 GN=Herc6 PE=4 SV=1 CANONICAL=A0A9J7KCA7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GGC1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGC1/entry", "sequence": { "sequence": "MYFHWAADSRQPRRLNGRDGLELLQAASGERHSLLLFSNHRVYSCGDNSLGQLGQKREQNTEQPEPIQALGTLDIDLVSCGKEHSIAVCHKGRVFAWGAGSEGQLGIGEFKEINLMPMRIKTLGGIKIIQVSCGHYHSLALSEDGQVFSWGKNSQGQLGLGMQSSSQASPQKVTSLEGIPLAQVAAGGSHSFALSLTGTSYGWGSNSVGQLALSGENSTVQISKPHSIDALKNLGVIYISCGYEHTAVLTKDGQVFTFGDNSSGQLQNNPRGKRRGPQLVEGIKGQVSKIECGSYHTIAYVYTTGQVVSLGHGPRPTSNPTHQKAPAESSDIICLLSAADLVDVKVKDIFAGAYANFATTHRHARSKSVSMKILPEISRINQSLAKKWIAAKINKELAEAKREINLIFSSSACLTASFLKKRDTREENFVDVDLTMARNVFKKLTAVKWISPLITTCLEDNLLGDLPCHSQHQDALLIFLLLPECPLMQNNRNWKTLTVKFAKAICKMNKESLAFLRKCWASLEASSLDTVVQMLKRAITIISQLHDPYSKIQHQCDLKALLEVMKHVHKANHQLPESTFVIHELSHMLNPDAEICKLLLRHNSFVPELPNLVVFSDFLFSFDLPFKIKLMKCDSSAKLKFEAMASQGRMRTFLTLEVRRSHLVEDTMRQLRQAEFSDLKKPLVVEFIKEICFEAGGVTSEFFHCIFEEMTAPKYEMFMYPEKSSCMWFPVNPKFENKDYFFFGVLCGLSLSNVKVVNLPFPLALYKKLLKQKPSLEDLKELSFPLGKSLQEVLNCEAGDVEELHIHFSIHWDKKDVNLIPNGISVPVNETNKQDYVSKCVDYIFNTSVKTIYKEFYRGFYTVCNLDIIRQFQPEELKTAITGNDNCDWKQFENNSLYEREYHKSHPTILLFWKAFHKLTLDEKKKFLLFLTGSDRLHVKGLQYEGIRFRCPQTLTEDDNPRSLTCHSILDLPKYSTMERMEEALQVAINSNKGFVSQR", "length": 999, "header": "tr|A0A9J7GGC1-1|A0A9J7KCA7_CRIGR Computationally mapped isoform of Probable E3 ubiquitin-protein ligase HERC6 isoform X4 OS=Cricetulus griseus OX=10029 GN=Herc6 PE=4 SV=1 CANONICAL=A0A9J7KCA7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GIV0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIV0/entry", "sequence": { "sequence": "MYFHWAADSRQPRRLNGRDGLELLQAASGERHSLLLFSNHRVYSCGDNSLGQLGQKREQNTEQPEPIQALGTLDIDLVSCGKEHSIAVCHKGRVFAWGAGSEGQLGIGEFKEINLMPMRIKTLGGIKIIQVSCGHYHSLALSEDGQVFSWGKNSQGQLGLGMQSSSQASPQKVTSLEGIPLAQVAAGGSHSFALSLTGTSYGWGSNSVGQLALSGENSTVCFLSEVQISKPHSIDALKNLGVIYISCGYEHTAVLTKDGQVFTFGDNSSGQLQNNPRGKRRGPQLVEGIKGQVSKIECGSYHTIAYVYTTGQVVSLGHGPRPTSNPTHQKAPAESSDIICLLSAADLVDVKVKDIFAGAYANFATTHRHARSKSVSMKILPEISRINQSLAKKWIAAKINKELAEAKREINLIFSSSACLTASFLKKRDTREENFVDVDLTMARNVFKKLTAVKWISPLITTCLEDNLLGDLPCHSQHQDALLIFLLLPECPLMQNNRNWKTLTVKFAKAICKMNKESLAFLRKCWASLEASSLDTVVQMLKRAITIISQLHDPYSKIQHQCDLKALLEVMKHVHKANHQLPESTFVIHELSHMLNPDAEICKLLLRHNSFVPELPNLVVFSDFLFSFDLPFKIKLMKCDSSAKLKFEAMASQGRMRTFLTLEVRRSHLVEDTMRQLRQAEFSDLKKPLVVEFIKEICFEAGGVTSEFFHCIFEEMTAPKYEMFMYPEKSSCMWFPVNPKFENKDYFFFGVLCGLSLSNVKVVNLPFPLALYKKLLKQKPSLEDLKELSFPLGKSLQEVLNCEAGDVEELHIHFSIHWDKKDVNLIPNGISVPVNETNKQDYVSKCVDYIFNTSVKTIYKEFYRGFYTVCNLDIIRQFQPEELKTAITGNDNCDWKQFENNSLYEREYHKSHPTILLFWKAFHKLTLDEKKKFLLFLTGSDRLHVKGLQYEGIRFRCPQTLTEDDNPRSLTCHSILDLPKYSTMERMEEALQVAINSNKGFVSQR", "length": 1005, "header": "tr|A0A9J7GIV0-1|A0A9J7KCA7_CRIGR Computationally mapped isoform of Probable E3 ubiquitin-protein ligase HERC6 isoform X4 OS=Cricetulus griseus OX=10029 GN=Herc6 PE=4 SV=1 CANONICAL=A0A9J7KCA7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H446-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H446/entry", "sequence": { "sequence": "MYFHWAADSRQPRRLNGRDGLELLQAASGERHSLLLFSNHRVYSCGDNSLGQLGQKREQNTEQPEPIQALGTLDIDLVSCGKEHSIAVCHKGRVFAWGAGSEGQLGIGEFKEINLMPMRIKTLGGIKIIQVSCGHYHSLALSEDGQVFSWGKNSQGQLGLGMQSSSQASPQKVTSLEGIPLAQVAAGGSHSFALSLTGTSYGWGSNSVGQLALSGENSTVCFLSEVQISKPHSIDALKNLGVIYISCGYEHTAVLTKDGQVFTFGDNSSGQLQNNPRGKRRGPQLVEGIKGQVSKIECGSYHTIAYVYTTGQVVSLGHGPRPTSNPTHQKAPAESSDIICLLSAADLVDVKVKDIFAGAYANFATTHRVSHARSKSVSMKILPEISRINQSLAKKWIAAKINKELAEAKREINLIFSSSACLTASFLKKRDTREENFVDVDLTMARNVFKKLTAVKWISPLITTCLEDNLLGDLPCHSQHQDALLIFLLLPECPLMQNNRNWKTLTVKFAKAICKMNKESLAFLRKCWASLEASSLDTVVQMLKRAITIISQLHDPYSKIQHQCDLKALLEVMKHVHKANHQLPESTFVIHELSHMLNPDAEICKLLLRHNSFVPELPNLVVFSDFLFSFDLPFKIKLMKCDSSAKLKFEAMASQGRMRTFLTLEVRRSHLVEDTMRQLRQAEFSDLKKPLVVEFIKEICFEAGGVTSEFFHCIFEEMTAPKYEMFMYPEKSSCMWFPVNPKFENKDYFFFGVLCGLSLSNVKVVNLPFPLALYKKLLKQKPSLEDLKELSFPLGKSLQEVLNCEAGDVEELHIHFSIHWDKKDVNLIPNGISVPVNETNKGFYTVCNLDIIRQFQPEELKTAITGNDNCDWKQFENNSLYEREYHKSHPTILLFWKAFHKLTLDEKKKFLLFLTGSDRLHVKGLQYEGIRFRCPQTLTEDDNPRSLTCHSILDLPKYSTMERMEEALQVAINSNKGFVSQR", "length": 982, "header": "tr|A0A9J7H446-1|A0A9J7H446_CRIGR Computationally mapped isoform of Probable E3 ubiquitin-protein ligase HERC6 isoform X9 OS=Cricetulus griseus OX=10029 GN=Herc6 PE=4 SV=1 CANONICAL=A0A9J7KCA7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H550-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H550/entry", "sequence": { "sequence": "MYFHWAADSRQPRRLNGRDGLELLQAASGERHSLLLFSNHRVYSCGDNSLGQLGQKREQNTEQPEPIQALGTLDIDLVSCGKEHSIAVCHKGRVFAWGAGSEGQLGIGEFKEINLMPMRIKTLGGIKIIQVSCGHYHSLALSEDGQVFSWGKNSQGQLGLGMQSSSQASPQKVTSLEGIPLAQVAAGGSHSFALSLTGTSYGWGSNSVGQLALSGENSTVCFLSEVQISKPHSIDALKNLGVIYISCGYEHTAVLTKDGQVFTFGDNSSGQLQNNPRGKRRGPQLVEGIKGQVSKIECGSYHTIAYVYTTGQVVSLGHGPRPTSNPTHQKAPAESSDIICLLSAADLVDVKVKDIFAGAYANFATTHRVSHARSKSVSMKILPEISRINQSLAKKWIAAKINKELAEAKREINLIFSSSACLTASFLKKRDTREENFVDVDLTMARNVFKKLTAVKWISPLITTCLEDNLLGDLPCHSQHQDALLIFLLLPECPLMQNNRNWKTLTVKFAKAICKMNKESLAFLRKCWASLEASSLDTVVQMLKRAITIISQLHDPYSKIQHQCDLKALLEVMKHVHKANHQLPESTFVIHELSHMLNPDAEICKLLLRHNSFVPELPNLVVFSDFLFSFDLPFKIKLMKCDSSAKLKFEAMASQGRMRTFLTLEVRRSHLVEDTMRQLRQAEFSDLKKPLVVEFIKEICFEAGGVTSEFFHCIFEEMTAPKYEMFMYPEKSSCMWFPVNPKFENKDYFFFGVLCGLSLSNVKVVNLPFPLALYKKLLKQKPSLEDLKELSFPLGKSLQEVLNCEAGDVEELHIHFSIHWDKKDVNLIPNGISVPVNETNKMLNK", "length": 845, "header": "tr|A0A9J7H550-1|A0A9J7H550_CRIGR Computationally mapped isoform of Probable E3 ubiquitin-protein ligase HERC6 isoform X11 OS=Cricetulus griseus OX=10029 GN=Herc6 PE=4 SV=1 CANONICAL=A0A9J7KCA7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H696-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H696/entry", "sequence": { "sequence": "MYFHWAADSRQPRRLNGRDGLELLQAASGERHSLLLFSNHRVYSCGDNSLGQLGQKREQNTEQPEPIQALGTLDIDLVSCGKEHSIAVCHKGRVFAWGAGSEGQLGIGEFKEINLMPMRIKTLGGIKIIQVSCGHYHSLALSEDGQVFSWGKNSQGQLGLGMQSSSQASPQKVTSLEGIPLAQVAAGGSHSFALSLTGTSYGWGSNSVGQLALSGENSTVQISKPHSIDALKNLGVIYISCGYEHTAVLTKDGQVFTFGDNSSGQLQNNPRGKRRGPQLVEGIKGQVSKIECGSYHTIAYVYTTGQVVSLGHGPRPTSNPTHQKAPAESSDIICLLSAADLVDVKVKDIFAGAYANFATTHRVSHARSKSVSMKILPEISRINQSLAKKWIAAKINKELAEAKREINLIFSSSACLTASFLKKRDTREENFVDVDLTMARNVFKKLTAVKWISPLITTCLEDNLLGDLPCHSQHQDALLIFLLLPECPLMQNNRNWKTLTVKFAKAICKMNKESLAFLRKCWASLEASSLDTVVQMLKRAITIISQLHDPYSKIQHQCDLKALLEVMKHVHKANHQLPESTFVIHELSHMLNPDAEICKLLLRHNSFVPELPNLVVFSDFLFSFDLPFKIKLMKCDSSAKLKFEAMASQGRMRTFLTLEVRRSHLVEDTMRQLRQAEFSDLKKPLVVEFIKEICFEAGGVTSEFFHCIFEEMTAPKYEMFMYPEKSSCMWFPVNPKFENKDYFFFGVLCGLSLSNVKVVNLPFPLALYKKLLKQKPSLEDLKELSFPLGKSLQEVLNCEAGDVEELHIHFSIHWDKKDVNLIPNGISVPVNETNKQDYVSKCVDYIFNTSVKTIYKEFYRGFYTVCNLDIIRQFQPEELKTAITGNDNCDWKQFENNSLYEREYHKSHPTILLFWKAFHKLTLDEKKKFLLFLTGSDRLHVKGLQYEGIRFRCPQTLTEDDNPRSLTCHSILDLPKYSTMERMEEALQVAINSNKGFVSQR", "length": 1001, "header": "tr|A0A9J7H696-1|A0A9J7H696_CRIGR Computationally mapped isoform of Probable E3 ubiquitin-protein ligase HERC6 isoform X7 OS=Cricetulus griseus OX=10029 GN=Herc6 PE=4 SV=1 CANONICAL=A0A9J7KCA7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H744-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H744/entry", "sequence": { "sequence": "MYFHWAADSRQPRRLNGRDGLELLQAASGERHSLLLFSNHRVYSCGDNSLGQLGQKREQNTEQPEPIQALGTLDIDLVSCGKEHSIAVCHKGRVFAWGAGSEGQLGIGEFKEINLMPMRIKTLGGIKIIQVSCGHYHSLALSEDGQVFSWGKNSQGQLGLGMQSSSQASPQKVTSLEGIPLAQVAAGGSHSFALSLTGTSYGWGSNSVGQLALSGENSTEVQISKPHSIDALKNLGVIYISCGYEHTAVLTKDGQVFTFGDNSSGQLQNNPRGKRRGPQLVEGIKGQVSKIECGSYHTIAYVYTTGQVVSLGHGPRPTSNPTHQKAPAESSDIICLLSAADLVDVKVKDIFAGAYANFATTHRVSHARSKSVSMKILPEISRINQSLAKKWIAAKINKELAEAKREINLIFSSSACLTASFLKKRDTREENFVDVDLTMARNVFKKLTAVKWISPLITTCLEDNLLGDLPCHSQHQDALLIFLLLPECPLMQNNRNWKTLTVKFAKAICKMNKESLAFLRKCWASLEASSLDTVVQMLKRAITIISQLHDPYSKIQHQCDLKALLEVMKHVHKANHQLPESTFVIHELSHMLNPDAEICKLLLRHNSFVPELPNLVVFSDFLFSFDLPFKIKLMKCDSSAKLKFEAMASQGRMRTFLTLEVRRSHLVEDTMRQLRQAEFSDLKKPLVVEFIKEICFEAGGVTSEFFHCIFEEMTAPKYEMFMYPEKSSCMWFPVNPKFENKDYFFFGVLCGLSLSNVKVVNLPFPLALYKKLLKQKPSLEDLKELSFPLGKSLQEVLNCEAGDVEELHIHFSIHWDKKDVNLIPNGISVPVNETNKQDYVSKCVDYIFNTSVKTIYKEFYRGFYTVCNLDIIRQFQPEELKTAITGNDNCDWKQFENNSLYEREYHKSHPTILLFWKAFHKLTLDEKKKFLLFLTGSDRLHVKGLQYEGIRFRCPQTLTEDDNPRSLTCHSILDLPKYSTMERMEEALQVAINSNKGFVSQR", "length": 1002, "header": "tr|A0A9J7H744-1|A0A9J7H744_CRIGR Computationally mapped isoform of Probable E3 ubiquitin-protein ligase HERC6 isoform X6 OS=Cricetulus griseus OX=10029 GN=Herc6 PE=4 SV=1 CANONICAL=A0A9J7KCA7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H880-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H880/entry", "sequence": { "sequence": "MYFHWAADSRQPRRLNGRDGLELLQAASGERHSLLLFSNHRVYSCGDNSLGQLGQKREQNTEQPEPIQALGTLDIDLVSCGKEHSIAVCHKGRVFAWGAGSEGQLGIGEFKEINLMPMRIKTLGGIKIIQVSCGHYHSLALSEDGQVFSWGKNSQGQLGLGMQSSSQASPQKVTSLEGIPLAQVAAGGSHSFALSLTGTSYGWGSNSVGQLALSGENSTVCFLSEVQISKPHSIDALKNLGVIYISCGYEHTAVLTKDGQVFTFGDNSSGQLQNNPRGKRRGPQLVEGIKGQVSKIECGSYHTIAYVYTTGQVVSLGHGPRPTSNPTHQKAPAESSDIICLLSAADLVDVKVKDIFAGAYANFATTHRVSHARSKSVSMKILPEISRINQSLAKKWIAAKINKELAEAKREINLIFSSSACLTASFLKKRDTREENFVDVDLTMARNVFKKLTAVKWISPLITTCLEDNLLGDLPCHSQHQDALLIFLLLPECPLMQNNRNWKTLTVKFAKAICKMNKESLAFLRKCWASLEASSLDTVVQMLKRAITIISQLHDPYSKIQHQCDLKALLEVMKHVHKANHQLPESTFVIHELSHMLNPDAEICKLLLRHNSFVPELPNLVVFSDFLFSFDLPFKIKLMKCDSSAKLKFEAMASQGRMRTFLTLEVRRSHLVEDTMRQLRQAEFSDLKKPLVVEFIKEICFEAGGVTSEFFHCIFEEMTAPKYEMFMYPEKSSCMWFPVNPKFENKDYFFFGVLCGLSLSNVKVVNLPFPLALYKKLLKQKPSLEDLKELSFPLGKSLQEVLNCEAGDVEELHIHFSIHWDKKDVNLIPNGISVPVNETNKQFQPEELKTAITGNDNCDWKQFENNSLYEREYHKSHPTILLFWKAFHKLTLDEKKKFLLFLTGSDRLHVKGLQYEGIRFRCPQTLTEDDNPRSLTCHSILDLPKYSTMERMEEALQVAINSNKGFVSQR", "length": 970, "header": "tr|A0A9J7H880-1|A0A9J7H880_CRIGR Computationally mapped isoform of Probable E3 ubiquitin-protein ligase HERC6 isoform X10 OS=Cricetulus griseus OX=10029 GN=Herc6 PE=4 SV=1 CANONICAL=A0A9J7KCA7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KCA7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCA7/entry", "sequence": { "sequence": "MYFHWAADSRQPRRLNGRDGLELLQAASGERHSLLLFSNHRVYSCGDNSLGQLGQKREQNTEQPEPIQALGTLDIDLVSCGKEHSIAVCHKGRVFAWGAGSEGQLGIGEFKEINLMPMRIKTLGGIKIIQVSCGHYHSLALSEDGQVFSWGKNSQGQLGLGMQSSSQASPQKVTSLEGIPLAQVAAGGSHSFALSLTGTSYGWGSNSVGQLALSGENSTVCFLSEVQISKPHSIDALKNLGVIYISCGYEHTAVLTKDGQVFTFGDNSSGQLQNNPRGKRRGPQLVEGIKGQVSKIECGSYHTIAYVYTTGQVVSLGHGPRPTSNPTHQKAPAESSDIICLLSAADLVDVKVKDIFAGAYANFATTHRVSHARSKSVSMKILPEISRINQSLAKKWIAAKINKELAEAKREINLIFSSSACLTASFLKKRDTREENFVDVDLTMARNVFKKLTAVKWISPLITTCLEDNLLGDLPCHSQHQDALLIFLLLPECPLMQNNRNWKTLTVKFAKAICKMNKESLAFLRKCWASLEASSLDTVVQMLKRAITIISQLHDPYSKIQHQCDLKALLEVMKHVHKANHQLPESTFVIHELSHMLNPDAEICKLLLRHNSFVPELPNLVVFSDFLFSFDLPFKIKLMKCDSSAKLKFEAMASQGRMRTFLTLEVRRSHLVEDTMRQLRQAEFSDLKKPLVVEFIKEICFEAGGVTSEFFHCIFEEMTAPKYEMFMYPEKSSCMWFPVNPKFENKDYFFFGVLCGLSLSNVKVVNLPFPLALYKKLLKQKPSLEDLKELSFPLGKSLQEVLNCEAGDVEELHIHFSIHWDKKDVNLIPNGISVPVNETNKQDYVSKCVDYIFNTSVKTIYKEFYRGFYTVCNLDIIRQFQPEELKTAITGNDNCDWKQFENNSLYEREYHKSHPTILLFWKAFHKLTLDEKKKFLLFLTGSDRLHVKGLQYEGIRFRCPQTLTEDDNPRSLTCHSILDLPKYSTMERMEEALQVAINSNKGFVSQR", "length": 1007, "header": "tr|A0A9J7KCA7-1|A0A9J7KCA7_CRIGR Isoform 1 of Probable E3 ubiquitin-protein ligase HERC6 isoform X4 OS=Cricetulus griseus OX=10029 GN=Herc6 PE=4 SV=1 CANONICAL=A0A9J7KCA7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGC1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGC1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGC1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGC1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100767771", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767771", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KCA7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCA7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": 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This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027286253", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286253" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KBH1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBH1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH19orf47", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBH1", "locus": {} } ], "crossref": [ { "id": "cd09531", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09531", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100768636", "url": "https://www.ncbi.nlm.nih.gov/gene/100768636", "database": "GeneID", "categories": [ 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291, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr291", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027286983", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027286983" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KCZ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCZ9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC103163650", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCZ9", "locus": {} } ], "crossref": [ { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "103163650", "url": "https://www.ncbi.nlm.nih.gov/gene/103163650", "database": "GeneID", "categories": [ 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OS=Cricetulus griseus OX=10029 GN=LOC103163650 PE=3 SV=1 CANONICAL=A0A9J7KCZ9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GHL2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHL2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GHL2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHL2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:103163650", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103163650", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KCZ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCZ9" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KCZ9", "url": 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This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035303319", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303319" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KB73", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB73" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Phykpl", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB73", "locus": {} } ], "crossref": [ { "id": "A0A9J7KB73", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KB73", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00610", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00610", "database": "CDD", "categories": [ "Protein Classification" ] 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"MAADPRAKAATLNLRRRLLSSSCRLFFPEDPVKIIRSKGQYLYDEQGREFLDCINNVAHVGHCHPIVVQAAHEQNLVLNTNSRYLHDNIVDYAQRLSETLPKELSVFYFLNSGSEANDLALRLARQYTGHQDVLVLDHAYHGHLSSLIDISPYKFRDLDGQKEWVHVVCTPISTQVSFHPQTWTTWQCLSLQAPLPDTYRGLYREDHPNPAEAYANEVKNVINIAQEKGRKIAAFFAESLPSVAGQIIPPAGYFSQVAEHIRRAGGLFVADEIQVGFGRVGKHFWAFQLEGESFVPDIVTMGKSIGNGHPVACVATTQAVSRAFEATGVEYFNTFGGNPVSCAVGLAVLDVLETEQLQAHATNVGNFLMEHLSQQKAKHPIIGDVRGTGLFIGVDLIKDETLRTPATEEAEYLVSRLKENYILLSTDGPGRNVLKFKPPLCFSLDNAQHVVAKLDDILTDMEEKVRSCKTLRIQPNSAKHPSEGTHPTQIL", "length": 491, "header": "tr|A0A9J7GHZ0-1|A0A9J7KB73_CRIGR Computationally mapped isoform of 5-phosphohydroxy-L-lysine phospho-lyase isoform X1 OS=Cricetulus griseus OX=10029 GN=Phykpl PE=3 SV=1 CANONICAL=A0A9J7KB73-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K9R7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9R7/entry", "sequence": { "sequence": 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Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GHZ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHZ0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GHZ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GHZ0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100767825", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767825", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KB73", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB73" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "pyridoxal phosphate binding", "id": "GO:0030170", "url": 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"MWVRTTTVTIKRWTEEKPGCCKTNIWDKTEKTGDCRETDRRCWKHQKCAGHIHPFSDCGHHNQHNQHNQHNQHTQHNQHNQHTHAVSHCNCESRLKDCSEKKNSSSPRDVGPTCCRDGGPTCYNFIHAPCIEIIPEEECVERIWYSWCKSYRPVSVAVIHHPIHHVCRPDDRNEEPEEEEETPSSVPPGPDTRPVPGAPDSAAPITIWRSESPTDKSQDVKVTKKVKKKKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEDEMVDEKAKLKKKVKKGKLITKKKVPVKSASSPPDLSRSLSPRELVRTSESSPESREELESEESYERGKERPSSEEIVESSSSRKREKSTTQAKKNGTKTLQTKKISKRKSPPVSNPNLS", "length": 383, "header": "tr|A0A9J7H3G6-1|A0A9J7H3G6_CRIGR Computationally mapped isoform of Protein PROCA1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Proca1 PE=4 SV=1 CANONICAL=A0A9J7KA77-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JPJ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPJ2/entry", "sequence": { "sequence": "MWVRTTTVTIKRWTEEKPGCCKTNIWDKTEKTDISRLPSWKRGHLDIEESSSDISSSDVSSFSSEGDCRETDRRCWKHQKCAGHIHPFSDCGHHNQHNQHNQHNQHTQHNQHNQHTHAVSHCNCESRLKDCSEKKNSSSPRDVGPTCCRDGGPTCYNFIHAPCIEIIPEEECVERIWYSWCKSYRPVSVAVIHHPIHHVCRPDDRNEEPEEEEETPSSVPPGPDTRPVPGAPDSAAPITIWRSESPTDKSQDVKVTKKVKKKKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEDEMVDEKAKLKKKVKKGKLITKKKVPVKSASSPPDLSRSLSPRELVRTSESSPESREELESEESYERGKERPSSEEIVESSSSRKREKSTTQAKKNGTKTLQTKKISKRKSPPVSNPNLS", "length": 416, "header": "tr|A0A9J7JPJ2-1|A0A9J7KA77_CRIGR Computationally mapped isoform of Protein PROCA1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Proca1 PE=4 SV=1 CANONICAL=A0A9J7KA77-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KA77-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KA77/entry", "sequence": { "sequence": "MYLPFPLKVTAGRLTGVAGNTRSVLGISTPSQTVAITTSTTSTTSTTSTPSTTSTTSTRTLLATATVNLGEGPLYGGPIPFRFPSSALAWCCQPSPSSAPRTMNGEALLAAWARPRSSWLSLWAPGESWRYGSQAESLVCGRLKDCSEKKNSSSPRDVGPTCCRDGGPTCYNFIHAPCIEIIPEEECVERIWYSWCKSYRPVSVAVIHHPIHHVCRPDDRNEEPEEEEETPSSVPPGPDTRPVPGAPDSAAPITIWRSESPTDKSQDVKVTKKVKKKKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEDEMVDEKAKLKKKVKKGKLITKKKVPVKSASSPPDLSRSLSPRELVRTSESSPESREELESEESYERGKERPSSEEIVESSSSRKREKSTTQAKKNGTKTLQTKKISKRKSPPVSNPNLS", "length": 431, "header": "tr|A0A9J7KA77-1|A0A9J7KA77_CRIGR Isoform 1 of Protein PROCA1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Proca1 PE=4 SV=1 CANONICAL=A0A9J7KA77-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 161, "start_aa": "Thr", "end_pos": 161, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr161", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 49, "start_aa": "Thr", "end_pos": 49, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr49", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JPJ2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPJ2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JPJ2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPJ2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100763727", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763727", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "arachidonate secretion", "id": "GO:0050482", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050482", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KA77", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KA77" } ], "pmid": "" }, { "name": "phospholipid metabolic process", "id": "GO:0006644", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006644", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KA77", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KA77" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "phospholipase A2 activity", "id": "GO:0004623", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004623", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KA77", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KA77" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 151, "end_pos": 153, "annotation": "n_glycosylation_sequon" }, { "start_pos": 407, "end_pos": 409, "annotation": "n_glycosylation_sequon" }, { "start_pos": 429, "end_pos": 431, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 49, 161 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 151, "end_pos": 153 }, { "start_pos": 407, "end_pos": 409 }, { "start_pos": 429, "end_pos": 431 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, 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"uniprot_ac": "A0A9J7K9K9", "uniprot_id": "A0A9J7K9K9_CRIGR", "mass": { "chemical_mass": 25808.0, "monoisotopic_mass": 25808.0 }, "refseq": { "ac": "XP_035305368", "name": "transmembrane protein 190 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305368" }, "gene_names": [ { "name": "Tmem190", "type": "recommended", "evidence": [ { "id": "A0A9J7K9K9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9K9" } ] }, { "name": "Tmem190", "type": "synonym", "evidence": [ { "id": "XP_035305368", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305368" } ] } ], "protein_names": [ { "name": "Transmembrane protein 190 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7K9K9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9K9/entry#names_and_taxonomy" } ] }, { "name": "transmembrane protein 190 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035305368", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305368" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035305368", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305368" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K9K9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9K9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tmem190", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9K9", "locus": {} } ], "crossref": [ { "id": "A0A9J7K9K9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K9K9", "database": "AlphaFoldDB", "categories": [] }, { "id": "100773819", "url": "https://www.ncbi.nlm.nih.gov/gene/100773819", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR028248", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028248", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044913", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044913", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100773819", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773819", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K9K9", "url": "https://www.orthodb.org/?gene=A0A9J7K9K9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR37868", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37868", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR37868:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37868:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15431", "url": 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], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035305387", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305387" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KD19", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD19" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tmem91", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD19", "locus": {} } ], "crossref": [ { "id": "A0A9J7KD19", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KD19", "database": "AlphaFoldDB", "categories": [] }, { "id": "100773651", "url": "https://www.ncbi.nlm.nih.gov/gene/100773651", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007593", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007593", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100773651", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773651", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KD19", "url": "https://www.orthodb.org/?gene=A0A9J7KD19", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14768", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14768", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14768:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14768:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04505", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04505", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035305387", "url": 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RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027289424", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289424" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KC54", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KC54" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Chrdl1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KC54", "locus": {} } ], "crossref": [ { "id": "100750419", "url": "https://www.ncbi.nlm.nih.gov/gene/100750419", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001007", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001007", "database": "InterPro", "categories": [ "Protein Classification" ] 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"MFFLPPTFESPLPLRAHSSSRHNLQAPDLGGAPQGTQSVCKRGRRRRPVPRFSQSLLGVSELHFAVAQRRRTWKMGGMKYIVSLVLFFIFLEGSKTEQVKHSETYCVFQDKKYRVGEKWHPYLEPYGLVYCVNCICTENGNVLCSRVRCPSLHCLSPVHIPHLCCPRCPDSLPPVNNKVTSKSCEYNGTTYQHGELFMAEGLFQNRQPNQCTQCSCSEGNVYCGLKTCPKLTCAFPVSVPDSCCRVCRGDGELSWEHSDGDIFRQPANREARHSYLRSPYDPPPSRQAGGPPRFPGGRSHRGALMDSQQASGTIVQIVINNKHKHGQVCVSNGKTYSHGESWHPNLRAFGIVECVLCTCNVTKQECKKIHCPNRYPCKYPQKIDGKCCKVCPGKKAKEEPPSQNFDSKGYFCGEETMPVYESVFMEDGETTRKIALETERPPQVEVHVWTIRKGILQHFHIEKISKRMFGELHHFKLVTRTTLNQWKIFTEGEARLSQMCSSRVCRTELEDLVQVLYLERPEKGHC", "length": 526, "header": "tr|A0A9J7K3B0-1|A0A9J7KC54_CRIGR Computationally mapped isoform of Chordin-like protein 1 isoform X6 OS=Cricetulus griseus OX=10029 GN=Chrdl1 PE=4 SV=1 CANONICAL=A0A9J7KC54-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KC54-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KC54/entry", "sequence": { "sequence": "MFFLPPTFESPLPLRAHSSSRHNLQAPDLGGAPQGTQSVCKRGRRRRPVPRFSQSLLGVSELHFAVAQRRRTWKMGGMKYIVSLVLFFIFLEGSKTEQVKHSETYCVFQDKKYRVGEKWHPYLEPYGLVYCVNCICTENGNVLCSRVRCPSLHCLSPVHIPHLCCPRCPEDSLPPVNNKVTSKSCEYNGTTYQHGELFMAEGLFQNRQPNQCTQCSCSEGNVYCGLKTCPKLTCAFPVSVPDSCCRVCRGDGELSWEHSDGDIFRQPANREARHSYLRSPYDPPPSRQAGGPPRFPGGRSHRGALMDSQQASGTIVQIVINNKHKHGQVCVSNGKTYSHGESWHPNLRAFGIVECVLCTCNVTKQECKKIHCPNRYPCKYPQKIDGKCCKVCPGKKAKEEPPSQNFDSKGYFCGEETMPVYESVFMEDGETTRKIALETERPPQVEVHVWTIRKGILQHFHIEKISKRMFGELHHFKLVTRTTLNQWKIFTEGEARLSQMCSSRVCRTELEDLVQVLYLERPEKGHC", "length": 527, "header": "tr|A0A9J7KC54-1|A0A9J7KC54_CRIGR Isoform 1 of Chordin-like protein 1 isoform X6 OS=Cricetulus griseus OX=10029 GN=Chrdl1 PE=4 SV=1 CANONICAL=A0A9J7KC54-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K3B0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3B0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K3B0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3B0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100750419", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750419", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "system development", "id": "GO:0048731", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048731", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KC54", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KC54" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KC54", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KC54" } ], "pmid": "" }, { "name": "negative regulation of BMP signaling pathway", "id": "GO:0030514", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030514", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KC54", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KC54" } ], "pmid": "" }, { "name": "ossification", "id": "GO:0001503", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001503", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KC54", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KC54" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KC54", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KC54" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "BMP binding", "id": "GO:0036122", "url": 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035301233", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301233" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K802", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K802" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100753016", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K802", "locus": {} } ], "crossref": [ { "id": "A0A9J7K802", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K802", "database": "AlphaFoldDB", "categories": [] }, { "id": "100753016", "url": "https://www.ncbi.nlm.nih.gov/gene/100753016", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002181", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002181", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014716", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014716", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036056", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036056", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100753016", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753016", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K802", "url": "https://www.orthodb.org/?gene=A0A9J7K802", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16146", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16146", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16146:SF46", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16146:SF46", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_035301233", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301233", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K802", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K802", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K802-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K802-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSKLCLLLFLIVATIGCTAAKENLDANRWDNPASSSLSRSCKEIKQEMTGAQDGLYFLRTENGVIYQTFCDMTTAGGGWTLVASVHENNMYGKCTVGDRWSSQQGNRADSPEGDGNWANYNTFGSAEGATSDDYKNPGYFDIQAENVGIWHVPNNSPLQNWRNSSLLRYRTFTGFLKYMGHNLFGLYQRYPVIYGGGKCWTDNGPALPVVYDFGDAQKTASYYSPDGQNEFAAGYIQFRVFTNERAANALCAGIKVTGCNTEHHCIGGGGYFPESDLQCGDFSAFDWDGYGTHSGYSSSREITEAAVLLFYH", "length": 312, "header": "tr|A0A9J7K802-1|A0A9J7K802_CRIGR Isoform 1 of Intelectin-1a OS=Cricetulus griseus OX=10029 GN=LOC100753016 PE=4 SV=1 CANONICAL=A0A9J7K802-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K802-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K802/entry", "sequence": { "sequence": "MSKLCLLLFLIVATIGCTAAKENLDANRWDNPASSSLSRSCKEIKQEMTGAQDGLYFLRTENGVIYQTFCDMTTAGGGWTLVASVHENNMYGKCTVGDRWSSQQGNRADSPEGDGNWANYNTFGSAEGATSDDYKNPGYFDIQAENVGIWHVPNNSPLQNWRNSSLLRYRTFTGFLKYMGHNLFGLYQRYPVIYGGGKCWTDNGPALPVVYDFGDAQKTASYYSPDGQNEFAAGYIQFRVFTNERAANALCAGIKVTGCNTEHHCIGGGGYFPESDLQCGDFSAFDWDGYGTHSGYSSSREITEAAVLLFYH", "length": 312, "header": "tr|A0A9J7K802-1|A0A9J7K802_CRIGR Isoform 1 of Intelectin-1a OS=Cricetulus griseus OX=10029 GN=LOC100753016 PE=4 SV=1 CANONICAL=A0A9J7K802-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035301250", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301250" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K9F4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9F4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100761204", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9F4", "locus": {} } ], "crossref": [ { "id": "A0A9J7K9F4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K9F4", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein 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"MESKDEVSDTDSGIILQSGPDSPVSPMKELTNAVRKQQRALEAKLEACLEELRRLCLREAELTGTLPAEYPLKPGEKAPKVRRRIGAAYKLDEWALHREDPLSSLERQFALQLQITEAAHRLCAEENLSRQVRRQRKHAALQEEKKLRELERCLGDRRRNSEPPPTTVPSMGRELSASDDSSLSDGLLLEEEDSKAPKPPPESPAPPSRPLPPQSLEGLQQTGPESGGLERAPIQNSPWKETSLDHPYEKPRKSSELSSESSSPATTPQDQPSTSSLWLLDPASYHVVPIRNVPGQRQGRTSAPATPEMQGRRGQSQSLRVDSFRTGAEGRGRSAFPRRRPTHYTVTVPDSCFTPSKPPLPHPACHSCSEDSGSDVSSISHPTSPGSSSPDISFLRPLCPPEPPRHRGAWGPACGRELATHYPKLLLPAGYFPTGRYVMVAEGHLPPGEWELCRAALNAAYDEEGAPLRYQRLVPSHSRIVRTPSLKDNPAGRGLSKAAVSEELKWWHERARLRSSRPHSLDRQGAFRVRSLPPGRESFGRVSGPRTQVPPVCVLRRSPDGAPVQVFVPENGEIISQV", "length": 578, "header": "tr|A0A9J7K867-1|A0A9J7K867_CRIGR Isoform 1 of Innate immunity activator protein OS=Cricetulus griseus OX=10029 GN=Inava PE=4 SV=1 CANONICAL=A0A9J7K867-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K867-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K867/entry", "sequence": { "sequence": 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035300012", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300012" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K8C7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8C7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC103161082", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8C7", "locus": {} } ], "crossref": [ { "id": "A0A9J7K8C7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K8C7", "database": "AlphaFoldDB", "categories": [] }, { "id": "103161082", "url": "https://www.ncbi.nlm.nih.gov/gene/103161082", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053896", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053896", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:103161082", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103161082", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K8C7", "url": "https://www.orthodb.org/?gene=A0A9J7K8C7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24100", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24100", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24100:SF147", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24100:SF147", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22705", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22705", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035300012", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300012", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K8C7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8C7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K8C7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8C7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLFLRYKDSVDQQMGSLTSWSTVHLGYSEGQDAVNPPSSDSITDPSPPINPSLSCLLLSLTQCRGHRPLLISFLLDHPVSAEEVRAHPFTDVTLDCEFSFIDSTENLEFYWEREDIIEEYEVEDREFYRFFKYYDFFQVYTKVVYQFYDNAEQLEDQNALYEGRVSVDQNEISEGILSLLLRNVDFMDEAVYKCSAVSPNGRGENKVKLIVEDSEMPQVKFDKIDDEDVVTCTSKGWYLTPNVTWLDRGERDISNHSTVEVLEEQMNGLYRVYSVLKYPVKLNEKYVCHITETNENNRPIRSIRRYPSKCNSEGKRENRLYVPTQKLPLINIY", "length": 333, "header": "tr|A0A9J7K8C7-1|A0A9J7K8C7_CRIGR Isoform 1 of Butyrophilin subfamily 2 member A2 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC103161082 PE=4 SV=1 CANONICAL=A0A9J7K8C7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K8C7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8C7/entry", "sequence": { "sequence": "MLFLRYKDSVDQQMGSLTSWSTVHLGYSEGQDAVNPPSSDSITDPSPPINPSLSCLLLSLTQCRGHRPLLISFLLDHPVSAEEVRAHPFTDVTLDCEFSFIDSTENLEFYWEREDIIEEYEVEDREFYRFFKYYDFFQVYTKVVYQFYDNAEQLEDQNALYEGRVSVDQNEISEGILSLLLRNVDFMDEAVYKCSAVSPNGRGENKVKLIVEDSEMPQVKFDKIDDEDVVTCTSKGWYLTPNVTWLDRGERDISNHSTVEVLEEQMNGLYRVYSVLKYPVKLNEKYVCHITETNENNRPIRSIRRYPSKCNSEGKRENRLYVPTQKLPLINIY", "length": 333, "header": "tr|A0A9J7K8C7-1|A0A9J7K8C7_CRIGR Isoform 1 of Butyrophilin subfamily 2 member A2 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC103161082 PE=4 SV=1 CANONICAL=A0A9J7K8C7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7K8D0-1", "uniprot_ac": "A0A9J7K8D0", "uniprot_id": "A0A9J7K8D0_CRIGR", "mass": { "chemical_mass": 100999.0, "monoisotopic_mass": 100999.0 }, "refseq": { "ac": "XP_035303961", "name": "schlafen family member 5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303961" }, "gene_names": [ { "name": "Slfn5", "type": "recommended", "evidence": [ { "id": "A0A9J7K8D0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8D0" } ] }, { "name": "Slfn5", "type": "synonym", "evidence": [ { "id": "XP_035303961", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303961" } ] } ], "protein_names": [ { "name": "Schlafen family member 5", "type": "synonym", "evidence": [ { "id": "A0A9J7K8D0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8D0/entry#names_and_taxonomy" } ] }, { "name": "schlafen family member 5", "type": 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This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035303961", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303961" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K8D0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8D0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Slfn5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8D0", "locus": {} } ], "crossref": [ { "id": "A0A9J7K8D0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K8D0", "database": "AlphaFoldDB", "categories": [] }, { "id": "100750338", "url": "https://www.ncbi.nlm.nih.gov/gene/100750338", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007421", 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Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035304024", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304024" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K8E8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8E8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Slfn11", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8E8", "locus": {} } ], "crossref": [ { "id": "A0A9J7K8E8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K8E8", "database": "AlphaFoldDB", "categories": [] }, { "id": "100750627", "url": "https://www.ncbi.nlm.nih.gov/gene/100750627", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007421", 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This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035301726", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301726" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K8F5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8F5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Nckap5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8F5", "locus": {} } ], "crossref": [ { "id": "100759872", "url": "https://www.ncbi.nlm.nih.gov/gene/100759872", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026163", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026163", "database": "InterPro", "categories": [ "Protein Classification" ] 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"length": 1936, "header": "tr|A0A9J7K8F5-1|A0A9J7K8F5_CRIGR Isoform 1 of Nck-associated protein 5 isoform X2 OS=Cricetulus griseus OX=10029 GN=Nckap5 PE=4 SV=1 CANONICAL=A0A9J7K8F5-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1013, "start_aa": "Thr", "end_pos": 1013, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1013", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K8F5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8F5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K8F5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8F5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100759872", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759872", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "microtubule plus-end", "id": "GO:0035371", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035371", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K8F5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8F5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "microtubule depolymerization", "id": "GO:0007019", "url": 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"https://www.ncbi.nlm.nih.gov/protein/XP_035300100" } ] } ], "protein_names": [ { "name": "Uncharacterized protein LOC118238741", "type": "synonym", "evidence": [ { "id": "A0A9J7K8K1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8K1/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein LOC118238741", "type": "synonym", "evidence": [ { "id": "XP_035300100", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300100" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 20% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035300100", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300100" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K8K1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8K1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC118238741", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8K1", "locus": {} } ], "crossref": [ { "id": "A0A9J7K8K1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K8K1", "database": "AlphaFoldDB", "categories": [] }, { "id": "118238741", "url": "https://www.ncbi.nlm.nih.gov/gene/118238741", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:118238741", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118238741", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K8K1", "url": "https://www.orthodb.org/?gene=A0A9J7K8K1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "XP_035300100", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300100", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K8K1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8K1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K8K1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8K1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGVGGTSFKLPGYWEQWGHCGRSGVRQAAGTASTPRTSPKACLPAVLCSLLQRSGLGSRPKPHGSGCCRSCSCSCSSSLPSFLPSPPPFTFPEARGDGGRGAGRGLSRRLLLVECRGSQVAAPGRRGARGPGVRASGRLAPGGGGAAAAPDPGHVRPLAPPRAAASPGSPALPEPRSPLHSAPLPSLNKHRGSLAASFCLHTRAGRGPCQNKSSPISLDSSPNPAPPASQWSDSVSRLRHPPVLTPCFVLFFLSVHLAGTRFLRTQINSSKCWPGSQ", "length": 277, "header": "tr|A0A9J7K8K1-1|A0A9J7K8K1_CRIGR Isoform 1 of Uncharacterized protein LOC118238741 OS=Cricetulus griseus OX=10029 GN=LOC118238741 PE=4 SV=1 CANONICAL=A0A9J7K8K1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K8K1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8K1/entry", "sequence": { "sequence": "MGVGGTSFKLPGYWEQWGHCGRSGVRQAAGTASTPRTSPKACLPAVLCSLLQRSGLGSRPKPHGSGCCRSCSCSCSSSLPSFLPSPPPFTFPEARGDGGRGAGRGLSRRLLLVECRGSQVAAPGRRGARGPGVRASGRLAPGGGGAAAAPDPGHVRPLAPPRAAASPGSPALPEPRSPLHSAPLPSLNKHRGSLAASFCLHTRAGRGPCQNKSSPISLDSSPNPAPPASQWSDSVSRLRHPPVLTPCFVLFFLSVHLAGTRFLRTQINSSKCWPGSQ", "length": 277, "header": "tr|A0A9J7K8K1-1|A0A9J7K8K1_CRIGR Isoform 1 of Uncharacterized protein LOC118238741 OS=Cricetulus griseus OX=10029 GN=LOC118238741 PE=4 SV=1 CANONICAL=A0A9J7K8K1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K8K1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8K1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K8K1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8K1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:118238741", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118238741", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 211, "end_pos": 213, "annotation": "n_glycosylation_sequon" }, { "start_pos": 268, "end_pos": 270, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7K8K6-1", "uniprot_ac": "A0A9J7K8K6", "uniprot_id": "A0A9J7K8K6_CRIGR", "mass": { "chemical_mass": 105771.0, "monoisotopic_mass": 105771.0 }, "refseq": { "ac": "XP_035300116", "name": "muscular LMNA-interacting protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300116" }, "gene_names": [ { "name": "Mlip", "type": "recommended", "evidence": [ { "id": "A0A9J7K8K6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8K6" } ] }, { "name": "Mlip", "type": "synonym", "evidence": [ { "id": "XP_035300116", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300116" } ] } ], "protein_names": [ { "name": "Muscular LMNA-interacting protein", "type": "synonym", "evidence": [ { "id": "A0A9J7K8K6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8K6/entry#names_and_taxonomy" } ] }, { "name": "muscular LMNA-interacting protein", "type": "synonym", "evidence": [ { "id": "XP_035300116", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300116" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 2% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035300116", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300116" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K8K6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8K6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Mlip", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8K6", "locus": {} } ], "crossref": [ { "id": "A0A9J7K8K6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K8K6", "database": "AlphaFoldDB", "categories": [] }, { "id": "100752614", "url": "https://www.ncbi.nlm.nih.gov/gene/100752614", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029331", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029331", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752614", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752614", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K8K6", "url": "https://www.orthodb.org/?gene=A0A9J7K8K6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31514", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31514", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31514:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31514:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15274", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15274", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035300116", "url": 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"MLPEQGLLSDCGNNYFQMTSCILAGSIETTPKVSPGDSEAKPLIFTFVPSVRRLPTHIQLADTSKFLVKIPEEPSDKSPESVNRFEYSDHMTFSCDSKQERDQRILAYPSEVSGRNSQGTKFGRNEPQGMHQGDLFKAEYVFIVDSDGEDEATSRQSEQGPSGGTGSRATRPKSLAISSSLASGVVRPKVREVDLKASSHPEIPHGMAPQQKHGQLTSPTTSEQLARKPPAFSFVSPTNQKTPPIPANVRGASVLEEFHTRRLDVTGNSVEETATYFHTTAHDSPLSEWRGASSLVFSPSTQLPGSSLCGSNVAGHTRGLAPEAQKKMSTAPVLNPREDLRTSPSPASGASLKSPSPSYIPVRIVMHSLSPSPKPLTSSSHGSLSTVCSRMSSSSNLSKSGLKSPVPSRLSFLTAILKSNPSHQRPLSPASCPTFSLNSLASSTLTLDQRMKPSSPTPKKSLSSCSLTAGSTEQGEHQASAETPQSCHLPFIPKSPPLSQVYPISAPAPDSSSYTSMDIEKIPRGTLRSSATLPQLQTDTFGFAKVPPIAPSSSPLPSSEGRQHGDFRVPEKNRNICTPPSTLLSSASPVNESTALSSLEKCFHPSPALSDLIDRSKRACSQQHSGPGLRPSVLPAPPISHAGSAFQPSLSPEGSLTQVLQPSPSALYPSCGSGTCPSRTGPSESTIPNHSSLVPNPSLPVSLTRTKELISPCALPTSTDPENKKPKQYKTKSSYKAFAAIPTNTLLLEQKALDEPARTESNSKANVLDLPVEFYFPAQLRQQTEELCATIDKVLQDSLSMHSSGSPSRPPQKTLGSETSKTPAKHPRAAGRETKYANLLLSSSTASESQLTKPGVIRPVPVKSKLLLRKEEEVYEPNPFSKYLEDNSGLFSDQGMAIPHRPVSLHPLYQSKLYPKTLLHPQTLSHADCLTPGPFSHLSSFSLRDEQEKSPTFLSQDTYNKNYLEVHAEFDLIVQIAEFLIY", "length": 982, "header": "tr|A0A9J7K8K6-1|A0A9J7K8K6_CRIGR Isoform 1 of Muscular LMNA-interacting protein OS=Cricetulus griseus OX=10029 GN=Mlip PE=4 SV=1 CANONICAL=A0A9J7K8K6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K8K6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8K6/entry", "sequence": { "sequence": "MLPEQGLLSDCGNNYFQMTSCILAGSIETTPKVSPGDSEAKPLIFTFVPSVRRLPTHIQLADTSKFLVKIPEEPSDKSPESVNRFEYSDHMTFSCDSKQERDQRILAYPSEVSGRNSQGTKFGRNEPQGMHQGDLFKAEYVFIVDSDGEDEATSRQSEQGPSGGTGSRATRPKSLAISSSLASGVVRPKVREVDLKASSHPEIPHGMAPQQKHGQLTSPTTSEQLARKPPAFSFVSPTNQKTPPIPANVRGASVLEEFHTRRLDVTGNSVEETATYFHTTAHDSPLSEWRGASSLVFSPSTQLPGSSLCGSNVAGHTRGLAPEAQKKMSTAPVLNPREDLRTSPSPASGASLKSPSPSYIPVRIVMHSLSPSPKPLTSSSHGSLSTVCSRMSSSSNLSKSGLKSPVPSRLSFLTAILKSNPSHQRPLSPASCPTFSLNSLASSTLTLDQRMKPSSPTPKKSLSSCSLTAGSTEQGEHQASAETPQSCHLPFIPKSPPLSQVYPISAPAPDSSSYTSMDIEKIPRGTLRSSATLPQLQTDTFGFAKVPPIAPSSSPLPSSEGRQHGDFRVPEKNRNICTPPSTLLSSASPVNESTALSSLEKCFHPSPALSDLIDRSKRACSQQHSGPGLRPSVLPAPPISHAGSAFQPSLSPEGSLTQVLQPSPSALYPSCGSGTCPSRTGPSESTIPNHSSLVPNPSLPVSLTRTKELISPCALPTSTDPENKKPKQYKTKSSYKAFAAIPTNTLLLEQKALDEPARTESNSKANVLDLPVEFYFPAQLRQQTEELCATIDKVLQDSLSMHSSGSPSRPPQKTLGSETSKTPAKHPRAAGRETKYANLLLSSSTASESQLTKPGVIRPVPVKSKLLLRKEEEVYEPNPFSKYLEDNSGLFSDQGMAIPHRPVSLHPLYQSKLYPKTLLHPQTLSHADCLTPGPFSHLSSFSLRDEQEKSPTFLSQDTYNKNYLEVHAEFDLIVQIAEFLIY", "length": 982, "header": "tr|A0A9J7K8K6-1|A0A9J7K8K6_CRIGR Isoform 1 of Muscular LMNA-interacting protein OS=Cricetulus griseus OX=10029 GN=Mlip PE=4 SV=1 CANONICAL=A0A9J7K8K6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K8K6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8K6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K8K6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8K6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100752614", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752614", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 396, "end_pos": 398, "annotation": "n_glycosylation_sequon" }, { "start_pos": 591, "end_pos": 593, "annotation": "n_glycosylation_sequon" }, { "start_pos": 689, "end_pos": 691, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 396, "end_pos": 398 }, { "start_pos": 591, "end_pos": 593 }, { "start_pos": 689, "end_pos": 691 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7K8L0-1", "uniprot_ac": "A0A9J7K8L0", "uniprot_id": "A0A9J7K8L0_CRIGR", "mass": { "chemical_mass": 330454.0, "monoisotopic_mass": 330454.0 }, "refseq": { "ac": "XP_035300131", "name": "TPR and ankyrin repeat-containing protein 1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300131" }, "gene_names": [ { "name": "Trank1", "type": "recommended", "evidence": [ { "id": "A0A9J7K8L0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8L0" } ] }, { "name": "Trank1", "type": "synonym", "evidence": [ { "id": "XP_035300131", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300131" } ] } ], "protein_names": [ { "name": "TPR and ankyrin repeat-containing protein 1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035300131", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300131" }, { "id": "A0A9J7K8L0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8L0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035300131", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300131" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K8L0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8L0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Trank1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8L0", "locus": {} } ], "crossref": [ { "id": "100765447", "url": "https://www.ncbi.nlm.nih.gov/gene/100765447", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039904", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039904", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100765447", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765447", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K8L0", "url": "https://www.orthodb.org/?gene=A0A9J7K8L0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21529", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21529", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21529:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21529:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_035300131", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300131", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K8L0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8L0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K8L0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8L0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035304358", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304358" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KC41", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KC41" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC107979351", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KC41", "locus": {} } ], "crossref": [ { "id": "A0A9J7KC41", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KC41", "database": "AlphaFoldDB", "categories": [] }, { "id": "107979351", "url": "https://www.ncbi.nlm.nih.gov/gene/107979351", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": 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Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 5% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048601.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035304952", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304952" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K972", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K972" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100772245", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K972", "locus": {} } ], "crossref": [ { "id": "A0A9J7K972", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7K972", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd01852", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01852", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100772245", "url": "https://www.ncbi.nlm.nih.gov/gene/100772245", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006703", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006703", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772245", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772245", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K972", "url": "https://www.orthodb.org/?gene=A0A9J7K972", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10903", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10903", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10903:SF170", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10903:SF170", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04548", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04548", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035304952", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304952", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K972", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K972", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K972-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K972-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEPSDNSLRIVLVGKTGSGKSATANTILGQKTFASRIAPHAVTKSCQRASRKWEEKELLVVDTPGLFDTRVKHETTCIEVSRCVLYSCPGPHAIVLVLRLGRYTEEDQETVIRIKAIFGEAAMKYMVVLFTRKDELEDQILSDFIADSDTNLKSIIKECDGRCLAINNKAEKAEREMQVRELVELVEAMVQKNGGVYFSDAIYKDVEQRLRKEEETLRKLYTHQKENEIRIAQEEHDLGKLSTQEKEGMIQAIKEKYDKKIRQEAENNIFSQIVEGVKKILLKIWHVVASQFLHVYNEEFEK", "length": 303, "header": "tr|A0A9J7K972-1|A0A9J7K972_CRIGR Isoform 1 of GTPase IMAP family member 7 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100772245 PE=3 SV=1 CANONICAL=A0A9J7K972-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K972-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K972/entry", "sequence": { "sequence": "MAEPSDNSLRIVLVGKTGSGKSATANTILGQKTFASRIAPHAVTKSCQRASRKWEEKELLVVDTPGLFDTRVKHETTCIEVSRCVLYSCPGPHAIVLVLRLGRYTEEDQETVIRIKAIFGEAAMKYMVVLFTRKDELEDQILSDFIADSDTNLKSIIKECDGRCLAINNKAEKAEREMQVRELVELVEAMVQKNGGVYFSDAIYKDVEQRLRKEEETLRKLYTHQKENEIRIAQEEHDLGKLSTQEKEGMIQAIKEKYDKKIRQEAENNIFSQIVEGVKKILLKIWHVVASQFLHVYNEEFEK", "length": 303, "header": "tr|A0A9J7K972-1|A0A9J7K972_CRIGR Isoform 1 of GTPase IMAP family member 7 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100772245 PE=3 SV=1 CANONICAL=A0A9J7K972-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 3% of CDS bases frameshifts :: corrected 1 indel internal stop codons :: corrected 1 genomic stop codon ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035305014", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305014" } ] }, { "annotation": "May be involved in transcriptional regulation.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K989", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K989#function" }, { "database": "UniProtKB", "id": "ARBA00003767", "url": "https://www.uniprot.org/uniprotkb/ARBA00003767#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K989", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K989" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113838791", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K989", "locus": {} } ], "crossref": [ { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "113838791", "url": "https://www.ncbi.nlm.nih.gov/gene/113838791", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113838791", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113838791", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K989", "url": "https://www.orthodb.org/?gene=A0A9J7K989", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24381", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24381", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24381:SF455", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24381:SF455", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035305014", "url": 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"MAAQISHHHHKGNQFSFQSLVTFKDVAINFSKEEWECLHTSQKDLYRDVMLENYGNLVSVGLSESKPELVTCLEENKEPWMVNLDEAEDLEQGQFCYAIQEMIPKECTQDNCQRETSGCLGNNSPGDLHIRWFSVGRCKECEKFFTNGSDLQVHQRIHTGERPHNCKFCGMSFTRGSTLQVHQRIHTVDKPYKCSDCGKSFKHKSTLQVHQRIHSGEKPYKCKDCGKSFTNGSDLQVHQRIHTGEKPYKCSLCGKFFIQRTHLQVHQRMHTGERPHNCKFCAKSFTRGSTLQVHQRIHTGEKPYKCSLCGKFFIQRTHLQIHQRMHTGERPHNCKFCAKSFTRGSTLQVHQRIHTGEKPYKCSDCGKSFKHKSTLQVHQRIHSGEKPYKCKDCGKSFTNGSDLQVHQRIHTGEKPYKCSLCGKFFIQRIHLQVHQRIHTGEKPYKCSDCGKSFKHKSTLQVHQRIHSGEKPYKCKDCGKSFTNGSDLQVHQRIHTGEKPYKCSLCGKFFIQRIHLQVHQRIHTGEKPYKCKVCGKSFTSGSYLQVHQRIHTGEKPYNCKLCGKSFTRGSNLQIHQKIHTGKXPYKCSDCENIFKHKSTLQGHQRIHNGEKPYNFNECGKYFTNASDLQVHQRLHSREKPYNCKECGKFFNYGSDIQAHQRIHTGQKC", "length": 667, "header": "tr|A0A9J7K989-1|A0A9J7K989_CRIGR Isoform 1 of LOW QUALITY PROTEIN: zinc finger protein 420-like OS=Cricetulus griseus OX=10029 GN=LOC113838791 PE=3 SV=1 CANONICAL=A0A9J7K989-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K989-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K989/entry", "sequence": { 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{ "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K989", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K989" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. 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Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K9C7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9C7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K9C7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9C7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100753690", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753690", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular exosome", "id": "GO:0070062", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070062", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K9C7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9C7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "lipid binding", "id": "GO:0008289", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008289", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K9C7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9C7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "innate immune response in mucosa", "id": "GO:0002227", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002227", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K9C7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9C7" } ], "pmid": "" }, { "name": "negative regulation of toll-like receptor 4 signaling pathway", "id": "GO:0034144", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034144", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K9C7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9C7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 155, "end_pos": 157, "annotation": "n_glycosylation_sequon" }, { "start_pos": 265, "end_pos": 267, "annotation": "n_glycosylation_sequon" }, { "start_pos": 402, "end_pos": 404, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7K9C7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9C7" }, { "id": "SM00328", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00328" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Lipid-binding serum glycoprotein N-terminal", "eco_id": "ECO_0000259", "start_pos": 38, "end_pos": 258, "start_aa": "Ile", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 155, "end_pos": 157 }, { "start_pos": 265, "end_pos": 267 }, { "start_pos": 402, "end_pos": 404 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7K9D1-1", "uniprot_ac": "A0A9J7K9D1", "uniprot_id": "A0A9J7K9D1_CRIGR", "mass": { "chemical_mass": 132237.0, "monoisotopic_mass": 132237.0 }, "refseq": { "ac": "XP_035301026", "name": "condensin-2 complex subunit G2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301026" }, "gene_names": [ { "name": "Ncapg2", "type": "recommended", "evidence": [ { "id": "A0A9J7K9D1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9D1" } ] }, { "name": "Ncapg2", "type": "synonym", "evidence": [ { "id": "XP_035301026", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301026" } ] } ], "protein_names": [ { "name": "Condensin-2 complex subunit G2 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7K9D1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9D1/entry#names_and_taxonomy" } ] }, { "name": "condensin-2 complex subunit G2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_035301026", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301026" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035301026", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301026" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K9D1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9D1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ncapg2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9D1", "locus": {} } ], "crossref": [ { "id": "100752041", "url": "https://www.ncbi.nlm.nih.gov/gene/100752041", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024741", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024741", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752041", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752041", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FMHHGVH", "url": "https://omabrowser.org/oma/group/FMHHGVH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2N081", "url": "https://www.orthodb.org/?gene=A0A8C2N081", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7K9D1", "url": "https://www.orthodb.org/?gene=A0A9J7K9D1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16199", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16199", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16199:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16199:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12422", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12422", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035301026", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301026", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2N081", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N081", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2N081-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N081-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GYE1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GYE1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GYE1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GYE1-1", 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"id": "A0A9J7K9D1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9D1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"length": 1156, "header": "tr|A0A9J7K9D1-1|A0A9J7K9D1_CRIGR Isoform 1 of Condensin-2 complex subunit G2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ncapg2 PE=4 SV=1 CANONICAL=A0A9J7K9D1-1" }, "isoforms": [ { "isoform_ac": "A0A8C2N081-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N081/entry", "sequence": { "sequence": 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"length": 1139, "header": "tr|A0A8C2N081-1|A0A8C2N081_CRIGR Computationally mapped isoform of Condensin-2 complex subunit G2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ncapg2 PE=4 SV=1 CANONICAL=A0A9J7K9D1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GYE1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GYE1/entry", "sequence": { "sequence": "MEKRETFVQAVSKELVEEFLQFVQLDKKSIEITHAITSVILASISVINEHENYGPLLECAVILNGILYALPESEQKLQNSIQDLCVKWWEKGLPAKEDMGKTAFVMLLRRSLETKTGADMSRLWRIHQALYCFAYDLEENRDIKDMLLECFINVNYIKKEEGRRFLSFLFSWNVDFIKMIHETIKNQLSGLQKSLMVHIAEIYFRAWKKASGKTLEAIEYACIQDLMFHGIHLPRRSPVHSKVREVLSYFHGQKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPVRDPNFIATEMDSEIQKQFEELYSLLEDPYPRVRSTGVLGVCKITCKYWEMMPPTIIVDLLKKVTGELAFDISSADVRCSVFKCLPIILDNKLSHPLLEQLLPPLRYSLHDNSEKVRVAFVELLLKIKAVRAAKFWKICPMEDILVRLEIDARPVSRRLVSLIFNSFLPVNQPEEVWCERCVTLIQMNRAAARKFYQYAHEHTASTNIAKLIHVIRHCLNACIQRTLRECPEAHKECEKENASVLDKTLSVNDTASMAGLLEVIVILWKSIHRSLENNKEAKGYTINKFASVLPEYLKVFKDERCKIPLFMLMSFLPASAVPVFSCGVISVLRSQEESATGRSYCTLLDCLCSWGQVGHVLELIVDWLPTRPPQAKSNLASKRKVPISDTCPVKPELALLYMEYLLTHPKNRECLLAAPQKKLNQLLKALEGSKADLESLLESPSGNPLNFNKAAALHAFGLYCRLSVHLQYTFCPGEKIHLSILSETGSWLENKVLPLLQDQEEEYLKLRRDVYQQVIQTYLAVGKDVVMVGLGDPEFQIQLLQRSLGIMKAVKGFFYISLLLGILKEIAGNSMIQKTDSDEEVAVLFDSVQEVFQKMLECVAWTFRKQPEESLPLFHSVQTPLHEFVSTIQLWYKDTTVHHGILSTLIAAPVVEISHQLRKVSNTEELTTPQRLADLPPFSRCLLGIIMKSSDVVRSFLDELKACVTSSDIEGIVCLTAVVHIVMVINKGKHRSARLKEVAETVNRKLKTFMEITLEEDSLERFLYESSMRTLGEFLNS", "length": 1076, "header": "tr|A0A9J7GYE1-1|A0A9J7GYE1_CRIGR Computationally mapped isoform of Condensin-2 complex subunit G2 isoform X4 OS=Cricetulus griseus OX=10029 GN=Ncapg2 PE=4 SV=1 CANONICAL=A0A9J7K9D1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GZJ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZJ8/entry", "sequence": { "sequence": "MGKTAFVMLLRRSLETKTGADMSRLWRIHQALYCFAYDLEENRDIKDMLLECFINVNYIKKEEGRRFLSFLFSWNVDFIKMIHETIKNQLSGLQKSLMVHIAEIYFRAWKKASGKTLEAIEYACIQDLMFHGIHLPRRSPVHSKVREVLSYFHGQKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPVRDPNFIATEMDSEIQKQFEELYSLLEDPYPRVRSTGVLGVCKITCKYWEMMPPTIIVDLLKKVTGELAFDISSADVRCSVFKCLPIILDNKLSHPLLEQLLPPLRYSLHDNSEKVRVAFVELLLKIKAVRAAKFWKICPMEDILVRLEIDARPVSRRLVSLIFNSFLPVNQPEEVWCERCVTLIQMNRAAARKFYQYAHEHTASTNIAKLIHVIRHCLNACIQRTLRECPEAHKECEKENASVLDKTLSVNDTASMAGLLEVIVILWKSIHRSLENNKEAKGYTINKFASVLPEYLKVFKDERCKIPLFMLMSFLPASAVPVFSCGVISVLRSQEESATGRSYCTLLDCLCSWGQVGHVLELIVDWLPTRPPQAKSNLASKRKVPISDTCPVKPELALLYMEYLLTHPKNRECLLAAPQKKLNQLLKALEGSKADLESLLESPSGNPLNFNKAAALHAFGLYCRLSVHLQYTFCPGEKIHLSILSETGSWLENKVLPLLQDQEEEYLKLRRDVYQQVIQTYLAVGKDVVMVGLGDPEFQIQLLQRSLGIMKAVKGFFYISLLLGILKEIAGNSMIQKTDSDEEVAVLFDSVQEVFQKMLECVAWTFRKQPEESLPLFHSVQTPLHEFVSTIQLWYKDTTVHHGILSTLIAAPVVEISHQLRKVSNTEELTTPQRLADLPPFSRCLLGIIMKSSDVVRSFLDELKACVTSSDIEGIVCLTAVVHIVMVINKGKHRSARLKEVAETVNRKLKTFMEITLEEDSLERFLYESSMRTLGEFLNS", "length": 978, "header": "tr|A0A9J7GZJ8-1|A0A9J7GZJ8_CRIGR Computationally mapped isoform of Condensin-2 complex subunit G2 isoform X6 OS=Cricetulus griseus OX=10029 GN=Ncapg2 PE=4 SV=1 CANONICAL=A0A9J7K9D1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H0Q7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0Q7/entry", "sequence": { "sequence": "MEKRETFVQAVSKELVEEFLQFVQLDKKSIEITHAITSVILASISVINEHENYGPLLECAVILNEVTCLHKQCGSLKQNFKGILYALPESEQKLQNSIQDLCVKWWEKGLPAKEDMGKTAFVMLLRRSLETKTGADMSRLWRIHQALYCFAYDLEENRDIKDMLLECFINVNYIKKEEGRRFLSFLFSWNVDFIKMIHETIKNQLSGLQKSLMVHIAEIYFRAWKKASGKTLEAIEYACIQDLMFHGIHLPRRSPVHSKVREVLSYFHGQKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPVRDPNFIATEMDSEIQKQFEELYSLLEDPYPRVRSTGVLGVCKITCKYWEMMPPTIIVDLLKKVTGELAFDISSADVRCSVFKCLPIILDNKLSHPLLEQLLPPLRYSLHDNSEKVRVAFVELLLKIKAVRAAKFWKICPMEDILVRLEIDARPVSRRLVSLIFNSFLPVNQPEEVWCERCVTLIQMNRAAARKFYQYAHEHTASTNIAKLIHVIRHCLNACIQRTLRECPEAHKECEKENASVLDKTLSVNDTASMAGLLEVIVILWKSIHRSLENNKEAKGYTINKFASVLPEYLKVFKDERCKIPLFMLMSFLPASAVPVFSCGVISVLRSQEESATGRSYCTLLDCLCSWGQVGHVLELIVDWLPTRPPQAKSNLASKRKVPISDTCPVKPELALLYMEYLLTHPKNRECLLAAPQKKLNQLLKALEGSKADLESLLESPSGNPLNFNKAAALHAFGLYCRLSVHLQYTFCPGEKIHLSILSETGSWLENKVLPLLQDQEEEYLKLRRDVYQQVIQTYLAVGKDVVMVGLGDPEFQIQLLQRSLGIMKAVKGFFYISLLLGILKEIAGNSMIQKTDSDEEVAVLFDSVQEVFQKMLECVAWTFRKQPEESLPLFHSVQTPLHEFVSTIQLWYKDTTVHHGILSTLIAAPVVEISHQLRKVSNTEELTTPQRLADLPPFSRCLLGIIMKSSDVVRSFLDELKACVTSSDIEGIVCLTAVVHIVMVINKGKHRSARLKEVAETVNRKLKTFMEITLEEDSLERFLYESSMRTLGEFLNS", "length": 1093, "header": "tr|A0A9J7H0Q7-1|A0A9J7H0Q7_CRIGR Computationally mapped isoform of Condensin-2 complex subunit G2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Ncapg2 PE=4 SV=1 CANONICAL=A0A9J7K9D1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H2E5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2E5/entry", "sequence": { "sequence": "MESEPSPKMKKSIEITHAITSVILASISVINEHENYGPLLECAVILNEVTCLHKQCGSLKQNFKGILYALPESEQKLQNSIQDLCVKWWEKGLPAKEDMGKTAFVMLLRRSLETKTGADMSRLWRIHQALYCFAYDLEENRDIKDMLLECFINVNYIKKEEGRRFLSFLFSWNVDFIKMIHETIKNQLSGLQKSLMVHIAEIYFRAWKKASGKTLEAIEYACIQDLMFHGIHLPRRSPVHSKVREVLSYFHGQKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPVRDPNFIATEMDSEIQKQFEELYSLLEDPYPRVRSTGVLGVCKITCKYWEMMPPTIIVDLLKKVTGELAFDISSADVRCSVFKCLPIILDNKLSHPLLEQLLPPLRYSLHDNSEKVRVAFVELLLKIKAVRAAKFWKICPMEDILVRLEIDARPVSRRLVSLIFNSFLPVNQPEEVWCERCVTLIQMNRAAARKFYQYAHEHTASTNIAKLIHVIRHCLNACIQRTLRECPEAHKECEKENASVLDKTLSVNDTASMAGLLEVIVILWKSIHRSLENNKEAKGYTINKFASVLPEYLKVFKDERCKIPLFMLMSFLPASAVPVFSCGVISVLRSQEESATGRSYCTLLDCLCSWGQVGHVLELIVDWLPTRPPQAKSNLASKRKVPISDTCPVKPELALLYMEYLLTHPKNRECLLAAPQKKLNQLLKALEGSKADLESLLESPSGNPLNFNKAAALHAFGLYCRLSVHLQYTFCPGEKIHLSILSETGSWLENKVLPLLQDQEEEYLKLRRDVYQQVIQTYLAVGKDVVMVGLGDPEFQIQLLQRSLGIMKAVKGFFYISLLLGILKEIAGNSMIQKTDSDEEVAVLFDSVQEVFQKMLECVAWTFRKQPEESLPLFHSVQTPLHEFVSTIQLWYKDTTVHHGILSTLIAAPVVEISHQLRKVSNTEELTTPQRLADLPPFSRCLLGIIMKSSDVVRSFLDELKACVTSSDIEGIVCLTAVVHIVMVINKGKHRSARLKEVAETVNRKLKTFMEITLEEDSLERFLYESSMRTLGEFLNS", "length": 1076, "header": "tr|A0A9J7H2E5-1|A0A9J7H2E5_CRIGR Computationally mapped isoform of Condensin-2 complex subunit G2 isoform X5 OS=Cricetulus griseus OX=10029 GN=Ncapg2 PE=4 SV=1 CANONICAL=A0A9J7K9D1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K9D1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9D1/entry", "sequence": { "sequence": "MEKRETFVQAVSKELVEEFLQFVQLDNDSSDPFNLGELLDELSRKQKEELWQRLKDLLTETLLESPVDGWHTVEGQGEDRMESEPSPKMKKSIEITHAITSVILASISVINEHENYGPLLECAVILNEVTCLHKQCGSLKQNFKGILYALPESEQKLQNSIQDLCVKWWEKGLPAKEDMGKTAFVMLLRRSLETKTGADMSRLWRIHQALYCFAYDLEENRDIKDMLLECFINVNYIKKEEGRRFLSFLFSWNVDFIKMIHETIKNQLSGLQKSLMVHIAEIYFRAWKKASGKTLEAIEYACIQDLMFHGIHLPRRSPVHSKVREVLSYFHGQKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPVRDPNFIATEMDSEIQKQFEELYSLLEDPYPRVRSTGVLGVCKITCKYWEMMPPTIIVDLLKKVTGELAFDISSADVRCSVFKCLPIILDNKLSHPLLEQLLPPLRYSLHDNSEKVRVAFVELLLKIKAVRAAKFWKICPMEDILVRLEIDARPVSRRLVSLIFNSFLPVNQPEEVWCERCVTLIQMNRAAARKFYQYAHEHTASTNIAKLIHVIRHCLNACIQRTLRECPEAHKECEKENASVLDKTLSVNDTASMAGLLEVIVILWKSIHRSLENNKEAKGYTINKFASVLPEYLKVFKDERCKIPLFMLMSFLPASAVPVFSCGVISVLRSQEESATGRSYCTLLDCLCSWGQVGHVLELIVDWLPTRPPQAKSNLASKRKVPISDTCPVKPELALLYMEYLLTHPKNRECLLAAPQKKLNQLLKALEGSKADLESLLESPSGNPLNFNKAAALHAFGLYCRLSVHLQYTFCPGEKIHLSILSETGSWLENKVLPLLQDQEEEYLKLRRDVYQQVIQTYLAVGKDVVMVGLGDPEFQIQLLQRSLGIMKAVKGFFYISLLLGILKEIAGNSMIQKTDSDEEVAVLFDSVQEVFQKMLECVAWTFRKQPEESLPLFHSVQTPLHEFVSTIQLWYKDTTVHHGILSTLIAAPVVEISHQLRKVSNTEELTTPQRLADLPPFSRCLLGIIMKSSDVVRSFLDELKACVTSSDIEGIVCLTAVVHIVMVINKGKHRSARLKEVAETVNRKLKTFMEITLEEDSLERFLYESSMRTLGEFLNS", "length": 1156, "header": "tr|A0A9J7K9D1-1|A0A9J7K9D1_CRIGR Isoform 1 of Condensin-2 complex subunit G2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ncapg2 PE=4 SV=1 CANONICAL=A0A9J7K9D1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K9D1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9D1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K9D1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9D1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100752041", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752041", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZVW2-1", "protein_name": "Non-SMC condensin II complex subunit G2", "gene_name": "NCAPG2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKHQAPKSGLVPPHPRLTGGKGVNILPPICFSCEEMLLSARRNRTTMKREAFLQAVSKKSVEDFLRFTQISKDTFDPFNLNELLQELSRKQKEILWERLRHLLKETLMEKPVETWQRVEDAESNDGMEVESAPEMKQTVAVIQGVTAVVTASIPVVDETVNYKALLECAFILNGIIPALPESENTLRSAIRRVCEMWWEKGLEGKEQLGKTAFIMLLKKSLSKAATGVDIVCLRKLHQTLLCFDYDSEDSNEIKDLLLQCFMSVKHIKKEEGRRILSFFFSWNVNFIKMIHGTVKNQLQFFPRSLVEYISEIYFRAWKKVSGETLEILEHNCIQDFMHHGIHLPRSSSVYSKVREMLSYFHKQSKVRQGVEEMLYRLYKPILWRALKARNSEVRSNAAFLFIDAFPIRDPSFNTEEMDAEIQKQFEELFSLLEDPHPVVRSTGILGVSQITSKYWEMIPPTVIADLLKKLIEELACDVTSADVRCSVFKCLPITLDNKLSHPLLEQLLPTVKHSLHDNSEKVRVAFVDMLLKVKATKAAKFWKICPMEHLLARLEVDSRPVSRRIVNLLFNSFLPINQPEDVWCERCVTLIQMNPAAARKFYQYAYEYTAPTNIAKLMLTIRRCLNACIQKAVKESFGDDGEDEGEKENLSVLNDVLSINDVASMASLLEITVILWRSIHKALDHNEDAKDYTIRKFASVLPEYLKVFKDDRCITPLVILASFMPPAAIPTFSCGVISKLRSIDSGADQSKYSTLIDCMCRWGRVGHVLELACDWLSDMLTPRKNVKTSERRVRIHVTHESKPELALDYIEYLLTHPVNRGCLLSVPKKKLNHLLKVLSAAKEILGSVLKTTDTNRGSCSQGTGLRAFSLCCRLSIHLQNKFSEEGKDYLSHLQETGAWVESHVLPFILASEQEDGISKQSNVPELIIQAYLSVCKDVIMVGLGNVKFQLYFLDMALSVIQTARGAFCTPVLLCALKEITEASLTQSTEVDEVANVLHAVQTIFQKVLECVASRIKEQPGEGIQLIQSIQTPLGDFLHAVQCWHSFCPAVHQSVFSTLLAAILAEIKYALQEASSEKAFTIPRTVSDLPPLSSSLMAIIMKSVNVVRSFLNELLECILSEEIEGIFSLTSMVCTVIVIKGKHKTSLLKDVAPVIQRKLITYKEAATEESSSTERILYESSQKILDELLNP", "length": 1190 }, "evidence": [ { "id": "A0A9J7K9D1", "url": "https://omabrowser.org/oma/group/A0A9J7K9D1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0ABK0LVF6-1", "protein_name": "Condensin-2 complex subunit G2", "gene_name": "Ncapg2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEKREAFIQAVSKELVEEFLQFLQLDKDPSDPFSLSELLDELSRKQKEELWQRLKDLLTEALLESPVDGWLTAEVQGADDMEPEHSPKMKKSVEITYAIVTVILASVPIINEHENYGALLECAVILNGILYALPESEQKLQNSIQDLCVKWWERGLPAKEDMGKTAFVMLLRKSLETKTGADMCRLWRIHQALYCFDYDLEESREIKDMLLQCFINVNCIKKEEGRRFLSYLFSWNIDFIKMIHDTIKNQLPGLQKSLMVHIAEIYFRAWKKASGKILETIENDCIQDFMFHGIHLPRRSPVHSKVREVLSYFHQQKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPVRDPNFIATEMDSEIQKQFEELYSLLEDPYPWVRSTGILGVCKITSKYWEMMPPTILVDLLKKVTGELAFDISSADVRCSVFKCLPIILDNKLSHPLLEQLLPSLRYSLHDNAEKVRVAFVDLLLKVKAVRAAKFWKICPMEDILVRLEMDSRPVSRRLVSLIFNSFLPVNQPEEVWCERCVTLIQMNRAAARRFYQYAHEHTASTNIGLHLCLSRVSLPLPQSAWSRCSVFSLTKLIHVIRHCLNACIQRTLREGAETHKECEKENASVLDKTLSVNDTASMAGLLEIIVILWKNIHRSLENNKEAKAYTINKFASVLPEYLKVFKDERCKIPLFMLMSFLPASAVPVFSCGVISALRNQEESVTGRSYCTLLDCLCSWGQVGHVLELIVDWLPTVPPQAKSNLASKRKVQINDMCSVKPKLALLYMEYLLTHPKNRECLLSAPQKKLNQLLKALEGSKADLESLLQSPSGNPLNKATALHAFGLYCRMSVHLQYKFCSEEKIHLSILSDTGSWLENKVLPLLEDQEEEYLKLQRDVYQQIIQTYLAVCKDAVMVGLGDPKFQVQLLQRSFGIMKTVKEFFYVSLLLGILKEIAGNSMIYRTDSDEKVTVLFDLVQEVFQKMLECVACVFRKQPEESLQLFHSVQTPLHEFITTIQSWHQDTAVHHAVLSTLIAAPVVEISHQLQKVSDIEELTSPQCLADLPPFSRSLMGVIMKSSDVVRSFLDELKTCVTSGDIEGIVCLTAVLHIILVFNRGKHVSAKVQEVAASVNRKLKTFMEITLEEDSLERFLYESSMRTLGEFLNS", "length": 1163 }, "evidence": [ { "id": "A0A9J7K9D1", "url": "https://omabrowser.org/oma/group/A0A9J7K9D1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E7FH61-1", "protein_name": "Condensin-2 complex subunit G2", "gene_name": "ncapg2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSKRKQFLDSVHHEHVQDFLNFIKLHKDGADPFDLAEILAELQKSQRQDLWDRQLKLLQHSLTVSPSERWITGAEEDAGDMEVEVSEEQIQTMAVIEGVTIVSTVSVDALQEKDNYTTLLKCAQMLNAIESALPLSQTPLQQAIHWLFECWWRRDLQGKEELGWTAFLVCLENTVTLDKPVSELRRLCSLREVLLSVDFGSEKGQQVIDPLLQCFFRASHIKQEEGKRFLAFLFSWNDNFIRMIHETIKNQLQFFPKTLSVHVAEIYFRAWRKASGPFLEEIESACIQDLMQHALLLHRNSPVHSKVRQILTYFHKQKFREGVDEMLHRLYKPVLWKALKATNAEVRANATLLFTEAFPIHDPNMSSEMVDQAVQKQLDLLFALLDDPQPLVRSSAVLGVCSVLARCWEVIPSAVITDLLEKLILQLANDTSSPDVRCSVFMCMSIILDNSLSHPLMEKLLPALKSSLHDSSEKVRVAFVGMLLKIKAARAAKFWKVCSLEHLLARLEMDSAPVSKRIVNLLFNSFFPVNQPETVWCERCVTLIQTNPGAARKFYQHAYLYTAPANIVKLMLVIRKCLNVCIQNAGDEEFASSNKENSTLLEDVLSVQDTSSMASLLEILVILWKSVQKSLMANQEAFKYTTAKFGSSLPQYLKIFQEERCKAPLILLASLLPASALPALRSKVMSHLRSLKAGAAVTTYSQTLECLCSWGQISHIVELIENWLTEAAPVKEQGDEESTGKVHFDVLEESKPDLGLDYLDYMLLRPKTRECLLTLPLDQMRPLHKALNKWKSLLFSSLSGSEVSVAAIETALRAFIFHGRLCIHLQHKFPEEREFLKSLEHSVSWVEKRVLPFLVNSSSDQQLSLSTKIVESCVTVCKNVLRVSVGDSDFRDHLLQHVASVLQTEKGYMCIPHLLALLTEIAHGCLSQKAEGQEDQLSLTIRILTNIFQKVVEILAHRLRKDKEEGQELCCSSEEALHDFLLVTKFTSERSEFMTGVFSSLCAAVIIDISRPLQKISHVEELLMPETVNDLPPLSSTILKVTLGCPAVTRFFLSELSSSIESEAIDSITQWAAVTHILTIIKESDAFIVELKDIAGSVRRQIQNYYNSISENSDDIQRTIYESTVKMLNDVLISCQQTNN", "length": 1140 }, "evidence": [ { "id": "A0A9J7K9D1", "url": "https://omabrowser.org/oma/group/A0A9J7K9D1/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6DFV1-1", "protein_name": "Condensin-2 complex subunit G2", "gene_name": "Ncapg2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKREAFIQAVSKELVEEFLQFLQLDKDSSNPFSLSELLDELSRKQKEELWQRLKDLLTETLLESPVDRWQTVEVEGADDMESEHSPKMRKSIKIICAIVTVILASVSIINEHENYGALLECAVILNGILYALPESEQKLQNSIQDLCVKWWERGLPAKEDMGKTAFIMLLRRSLETKSGADVCRLWRIHQALYCFDYDWEESREIKDMLLECFINVNYIKKEEGRRFLSFLFSWNVDFIKMIHETIKNQLAGLQKSLMVHIAEIYFRAWKKASGKMLETIEYDCIQDFMFHGIHLLRRSPVHSKVREVLSYFHQQKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPNFTATEMDNEIQKQFEELYNLIEDPYPRVRSTGILGVCKISSKYWEMMPPNILVDFLKKVTGELAFDISSADVRCSVFKCLPIILDNKLSHPLLEQLLPTLRYSLHDNSEKVRVAFVDLLLKIKAVRAAKFWKICPMEDILVRLEMDSRPVSRRLVSLIFNSFLPVNQPEEVWCERCVTLIQMNRAAARRFYQYAHEHTASTNIAKLIHVIRHCLNACIQRTLREGSEAHKECEKENASVLDKTLSVNDTASMAGLLEIIVILWKNIHRSLENNKEAKIYTINKFAAVLPEYLKVFKDERCKIPLFMLMSFLPASAVPVFSCGVISVLRNQESVTGRSYCTLLDCLCSWGQVGHVLELIVDWLPTVPPQAKSNLASKRKVEINDTCSVKPELALLYMEYLLTHPKNRECLLSVPQKKLNQLLKALEGSKAELESFLQSPSGNPLNFNKATALHAFGLYCRMSVHLQYKFCSEEKIHLSILDDTGSWLENKVLPLLEDQEEEYLKLRKDVYQQIIQTYLAVCKDVVMVGLGDPKFQMQLLQRSFGIMKTVKGFFYVSLLLGILKEIAGNTIIHKTDSDEKVTVLFDLVQEVFQKMLECIACIFRKQPEESLPLFHSVQTPLHEFITTIQSWHKDTAVHHAVLSTLIAAPVVEISHQLQKVSDIEELTSPQCLHDLPPFSRCLVGVIMKSSDVVRSFVDELKACVTSGDVEGIVCLTAVLHIILVINKGKHISAKVKEVATAVYRKLKTFMEITLEEDSLERFLYESSMRTLGEFLNP", "length": 1138 }, "evidence": [ { "id": "A0A9J7K9D1", "url": "https://omabrowser.org/oma/group/A0A9J7K9D1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q86XI2-1", "protein_name": "Condensin-2 complex subunit G2", "gene_name": "NCAPG2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEKRETFVQAVSKELVGEFLQFVQLDKEASDPFSLNELLDELSRKQKEELWQRLKNLLTDVLLESPVDGWQVVEAQGEDNMETEHGSKMRKSIEIIYAITSVILASVSVINESENYEALLECVIILNGILYALPESERKLQSSIQDLCVTWWEKGLPAKEDTGKTAFVMLLRRSLETKTGADVCRLWRIHQALYCFDYDLEESGEIKDMLLECFININYIKKEEGRRFLSCLFNWNINFIKMIHGTIKNQLQGLQKSLMVYIAEIYFRAWKKASGKILEAIENDCIQDFMFHGIHLPRRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPNLHAIEMDSEIQKQFEELYSLLEDPYPMVRSTGILGVCKITSKYWEMMPPTILIDLLKKVTGELAFDTSSADVRCSVFKCLPMILDNKLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVRAAKFWKICPMEHILVRLETDSRPVSRRLVSLIFNSFLPVNQPEEVWCERCVTLVQMNHAAARRFYQYAHEHTACTNIAKLIHVIRHCLNACIQRAVREPPEDEEEEDGREKENVTVLDKTLSVNDVACMAGLLEIIVILWKSIDRSMENNKEAKLYTINKFASVLPEYLKVFKDDRCKIPLFMLMSFMPASAVPPFSCGVISTLRSREEGAVDKSYCTLLDCLCSWGQVGHILELVDNWLPTEHAQAKSNTASKGRVQIHDTRPVKPELALVYIEYLLTHPKNRECLLSAPRKKLNHLLKALETSKADLESLLQTPGGKPRGFSEAAAPRAFGLHCRLSIHLQHKFCSEGKVYLSMLEDTGFWLESKILSFIQDQEEDYLKLHRVIYQQIIQTYLTVCKDVVMVGLGDHQFQMQLLQRSLGIMQTVKGFFYVSLLLDILKEITGSSLIQKTDSDEEVAMLLDTVQKVFQKMLECIARSFRKQPEEGLRLLYSVQRPLHEFITAVQSRHTDTPVHRGVLSTLIAGPVVEISHQLRKVSDVEELTPPEHLSDLPPFSRCLIGIIIKSSNVVRSFLDELKACVASNDIEGIVCLTAAVHIILVINAGKHKSSKVREVAATVHRKLKTFMEITLEEDSIERFLYESSSRTLGELLNS", "length": 1143 }, "evidence": [ { "id": "A0A9J7K9D1", "url": "https://omabrowser.org/oma/group/A0A9J7K9D1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K9D1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9D1" } ], "pmid": "" }, { "name": "condensin complex", "id": "GO:0000796", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000796", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K9D1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9D1" } ], "pmid": "" }, { "name": "condensed nuclear chromosome", "id": "GO:0000794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000794", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K9D1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9D1" } ], "pmid": "" }, 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:: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. 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This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027289734", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289734" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K9M5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9M5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100761311", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9M5", "locus": {} } ], "crossref": [ { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100761311", "url": "https://www.ncbi.nlm.nih.gov/gene/100761311", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100761311", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761311", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7K9M5", "url": "https://www.orthodb.org/?gene=A0A9J7K9M5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23226", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23226", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23226:SF416", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23226:SF416", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13912", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13912", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027289734", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289734", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7K9M5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9M5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K9M5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9M5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRRMNSLVTNAPQGLLSFRDVSVDLSQEEWEFLDCDQRALYMDVMLENYSNLLFVGNHCRFDKYETVLDQGTKHDHVNIQEKPSEYNELGKIMLESSESTLYDIAENCKEDINRYKGGNTGEEPYTYKEYVNSLDLCSILSQNQRIHSGKEELEDTEYDEPFDSELVLTMEGADGAKKPLQCQECGKWFKMYSSLTSHQKTHAGERPSECKQGSGTFCAWSHLEYHGPTCTGEKLYICNECGKSFCRFSHLKRHQITHTGDKCYKCNQCEKSFTQKVSLRAHLRIHTGEKPYKCSECDRSFTQNTHLRTHQRMHTGEKPYKCGECDKSFTNSSHLKAHQRIHTGEKPYKCSECNFTCGSHLRRHQKIHTGEKTYKCSECDKSFAENSSLRVHQKIHTGENLHKCTECDKSFIRKGCLITHQRIHTGEKPYQCSECSKSFTQKSNLRTHQKIHSGEKPYKCSQCEKSFIQKASLTAHQKVHMRGALGM", "length": 487, "header": "tr|A0A9J7K9M5-1|A0A9J7K9M5_CRIGR Isoform 1 of Zinc finger protein 501 OS=Cricetulus griseus OX=10029 GN=LOC100761311 PE=3 SV=1 CANONICAL=A0A9J7K9M5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7K9M5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9M5/entry", "sequence": { "sequence": "MRRMNSLVTNAPQGLLSFRDVSVDLSQEEWEFLDCDQRALYMDVMLENYSNLLFVGNHCRFDKYETVLDQGTKHDHVNIQEKPSEYNELGKIMLESSESTLYDIAENCKEDINRYKGGNTGEEPYTYKEYVNSLDLCSILSQNQRIHSGKEELEDTEYDEPFDSELVLTMEGADGAKKPLQCQECGKWFKMYSSLTSHQKTHAGERPSECKQGSGTFCAWSHLEYHGPTCTGEKLYICNECGKSFCRFSHLKRHQITHTGDKCYKCNQCEKSFTQKVSLRAHLRIHTGEKPYKCSECDRSFTQNTHLRTHQRMHTGEKPYKCGECDKSFTNSSHLKAHQRIHTGEKPYKCSECNFTCGSHLRRHQKIHTGEKTYKCSECDKSFAENSSLRVHQKIHTGENLHKCTECDKSFIRKGCLITHQRIHTGEKPYQCSECSKSFTQKSNLRTHQKIHSGEKPYKCSQCEKSFIQKASLTAHQKVHMRGALGM", "length": 487, "header": "tr|A0A9J7K9M5-1|A0A9J7K9M5_CRIGR Isoform 1 of Zinc finger protein 501 OS=Cricetulus griseus OX=10029 GN=LOC100761311 PE=3 SV=1 CANONICAL=A0A9J7K9M5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. 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"o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7KAE1-1", "uniprot_ac": "A0A9J7KAE1", "uniprot_id": "A0A9J7KAE1_CRIGR", "mass": { "chemical_mass": 409132.0, "monoisotopic_mass": 409132.0 }, "refseq": { "ac": "XP_035302357", "name": "LOW QUALITY PROTEIN: spectrin beta chain, non-erythrocytic 5 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302357" }, "gene_names": [ { "name": "Sptbn5", "type": "recommended", "evidence": [ { "id": "A0A9J7KAE1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAE1" } ] }, { "name": "Sptbn5", "type": "synonym", "evidence": [ { "id": "XP_035302357", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302357" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: spectrin beta chain, non-erythrocytic 5 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035302357", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302357" }, { "id": "A0A9J7KAE1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAE1/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## internal stop codons :: corrected 1 genomic stop codon ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035302357", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302357" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KAE1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAE1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Sptbn5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAE1", "locus": {} } ], "crossref": [ { "id": "cd00176", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00176", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd21247", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21247", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100771467", "url": "https://www.ncbi.nlm.nih.gov/gene/100771467", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001589", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001589", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001715", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001715", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002017", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002017", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018159", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018159", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036872", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036872", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100771467", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771467", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KAE1", "url": "https://www.orthodb.org/?gene=A0A9J7KAE1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11915", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11915", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00307", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00307", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00435", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00435", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035302357", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302357", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KAE1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAE1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KAE1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAE1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDSEYEIGHVRKLQAQHAQMQEKTFTNWINNIFRLGRVGIRIQDLYTELADGVHLLRLLELISGEALPAPSPGHLRVHFLENNSHALAFLRAKVPIPFIGPENIVDGDQSLILGLLWVIILRFQISQISLDKEEFGASAALLSAKEALLAWCQRKTASYTNVTITDFSHSWSDGLGFNALLHAHRPDLLDYASLNLDHPVHNLSSAFRVAEQELGIAQLLDPEDVAGLHPDERSIMTYVSLYYHYFSRLHQGQTAQRRLAKILLQLQETEELQAQYEQLVADLLYWIGEKQMQLEARDFPDSLPAMRQLLAAFASFHAQEKPPRLQQRGAIEALLFQLQTTLRAQNRRPFLPREGLGPAELAQRWADLERAEASRSQAMQHRLLQLERLDTLACRFQCKAALRESFLNESAKMLDQARDSLTNPSTGEAATQRLHMLEASILPQEGRFQALGEIADILQQEQYHGWVDVARRQKEIAGRWRKLLQCLQEQRKQLADTQAVLSLLQEVEATTDQLGELQVLASSTACGQQLAEVVLLLQKHDLLEAQVSAHRTQVNCLAHHTAQLNSSQGTHVQMLQAKALALVELHHSLVSLVRARRTRLEQTLQLAQFLHSCEEEEAWLREHRQLMEKAALGRDLSQISTALRKHKALETELHRHQSVCADLMQRGRNLSVRGPPTQPDPLERAEAVQGTWQLLWTEASRRRARLQSALLVEQYFSDSAEAASWLLLRQKQLENASCGKDQAEAEALLQRHLVLEQGMRAFGEELRELEDQGRAVAALVSLKVRSXTWKGFRLLSPTLNEEPPEDWKRLDRETTGEPQGGVQVLAATGSQCSHQQMPFSSREEALNTGELKDLGNSQSRMNIIHSLEQKPQVVSAVCLLGEGPRMALQTEYDFDVDTNTILQAQAHLSQNYENLWALAKLHRARLEEAVALFSFYSSCRELQSWLEEQTALLQTLQPQGDNLEVTQLKCENFLMTLAIGKGHWAEVISTAQQLKQRCPGHTSKIQQQEEDLNQRWQRLEALKEEKSLQLTNTMEVCRLLQESESTRAQLLNMIGRLRALGPGGSEDNHGTLQWTQQKVLVLEKRISSLQRTTMEVMGSGPTEGWLLQEQVLVLQDLLKQAQGQLAQHVQIQTEARVQRGILQESQKLLLWAEGIRAQLCSKEELEDVTSAQELLRKHGGLQEETCLWQERLQQLEAQGQLVAVSDSPQSQEVASALRFLGQQGQQLKALCGLRQQKLQNRLELQRFAQEVDSFIATCASHEAFLHLDNLGEDLRETQSLLRQHQGFGWLRSTLGSRAEALRVRGEKLLLSQHPAEHKIRELLHSAQTWWARAQERSEQRREQLLVSLQLQEWKQAVAELMVCMQEKWPTVAGEPSQACCNILQKLKWHKITKSELLATHGYMEDLQQAGRELLHSHPSAQEDIQDRLQGLNHKWEELHSRMAEQGDKLQQTRQQEQLVELLQDVREMLEHLEGALQSTETGQDLCSSLRLQKQHCLLEDKSQALASKMAALISQTHRAFTSLTILEESQKCLQRFKSLQSKLATRHLQVQASVELYQFNCLHNLELTWVAEHMPSTSPTCPAHCWHDAQSLQHKHKVLQVEVKTHLGHVHRVLRSGQSLAASGHPQAQHIVEQCQKLEGHWAELEQACEARAHCLQQAVTVQQYFLKVSEIETWVEEKWPLASSQEYGSDDAATFGLIRKHQMLQQELALCWSSVEDLEQRFQTLPGFEASEQLGVVREQLQALQKLADARGQELEGTLKLHEFMREAEDLQGWLASWKQVARGGDDLGEDHEHVLQLCTKFAKFQNKIETGALRVETCQHLADSLLECGHSAAPKAHQRQKDLRAAWSELWQLTCAQSRLLHDTETTLRVHRDLLEILTQIQEKATSLPNDVAQDLRGVENQLRRHEVLERELAGMEQQLQELLKAGGRVQKLCPGPQALTSVQQKQQTVTQAWEALQLNMEQRRAQLEPAHLLLQFHTAVRDYTSWVASIHQELQTEECSWEPSSSLLRLRAHQWLRAELEAREELQQQAAKLGQQALLAAGIPTKEVQDGLQALQKERDQVFKAWTLKQEKLQAMLREQRLLRQCDQLAEILTAQEVFLKASTLGSSVEEVEQLISKHVIFQKVLTFQDKKEAALREQLKTVSSPKGQNLVYHVLEHRAQVKELAESRGQALHTSLMIANFTRAATQAEDWIQERVQQLRAWSPLGNLKDHPKHLQKHQAFKAEVQAHEQVITSVAKQGEGLLRQSHPQTGEVSQKLKALQELWEKLRQAVSLQGQALEDRRSFLEFLQRVDLAEAWIQEKERMVNSGDTGLNLEHCLQLCKQFRKLQVTVDDTYIRRIRNLSLQLKNQSPEESETISQRQNQLNNRWKTFHGNLLLYQQRLEAALEIHTLSSELDDITEQIREKESLIQALESTEDLENVQRLPWKQRMLQQGMALIQTQVESLEGKVGHLCKRSPEVTRCLLHKQQEMLGRWWEAWSRAQKWRESLDMGHKVWKLRILLRDLQDWAQRLKAEMDMRSTPCSPERALYMLQEHQAHKVELDIQTDSLSLARGKGQQLLASGYQLASGIPQALAAVEQELSSLEESWQRRQQQLQQALEQQLLLSSVEKVERWLDSEEPSLPSERLVDSLSTVETLLPKHKRHEQKLKARAEEISALEATAHSLHQSGHPEAHSILARCQALLLRKEALTERARAWGRQLEELRTFLQDSDEVATWLREKNLVALDRGQQDPATMQTQLQKQQNFQAELEASVYQQQELQMEGQRLLQGGHPASETIRERLQELGGLWAELQTNCQRKMARLQGAHKALHLQKMLEKLESWLESMKAELRVPVKSQDLPGVGELLGKQGELEATVESQTRQVQELQGEVQACVQEGHCLAKGVEERAQQLLQRFQSLQEPLQERRAALEAQSLLLQFFRDADEEMAWVQEKLPSATAQDYGQSLSTVQHLQEKHQNLENEISSHKALSQVVMGTGQKLVQAGHFAAEEVAARVQQLEAALEHLQTEAAWRRGMLQQALEAQQILMELLEAGSWLAERGRILDIEDLGQDAEATQVLLRRLEATMRDLEGFRSHIERLQQTAALLERGKNPGSPRVLSQLQAVREAHAQLLQRAEGRGQALREQLHLHQLEREAQLLDAWLTAKLTVVESQDCGQDLEGIKVMEATFAAFSREVQSLGQAKVQTLRELMAPLERGAPRFYPQIQAQKYRIQAAWERLNKAVELHRENLAAARELQSFEQAASELQGWIQEKTTLLEGEFQVHSLSPAQPLPQKHRCLQRELTAIEKEVARVQMEAHRLGQNYPVAQEGLAEWLTKVQGAQANLEAKVQEWSQKLSQATQSHTFLGRCRELLAWSQELVSSGELAGDVVAAKQFLEQHEELDQEIEECCLQAENTWQEGQQLLDNGHFMSLEVAECLQELERHLRELQVARDLRGQRFGQSRGLQQLRQRLELAEAWLASQEGLLLDPSCGRSVTDVEHLLCRHQALEKLLAAREEMFTQLQTMTEEVKGTHVMEGPVGLKQQPPAKGRQVTTSFWNSNCGTMASRALSLFPGMREAVEVPGGTGLAYIALLMPEHERLEDRKHTFSPG", "length": 3591, "header": "tr|A0A9J7KAE1-1|A0A9J7KAE1_CRIGR Isoform 1 of LOW QUALITY PROTEIN: spectrin beta chain, non-erythrocytic 5 isoform X2 OS=Cricetulus griseus OX=10029 GN=Sptbn5 PE=4 SV=1 CANONICAL=A0A9J7KAE1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KAE1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAE1/entry", "sequence": { "sequence": 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This record is derived from a genomic sequence (NW_003615231.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035292393", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035292393" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KAE4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAE4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100764299", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAE4", "locus": {} } ], "crossref": [ { "id": "A0A9J7KAE4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KAE4", "database": "AlphaFoldDB", "categories": [] }, { "id": "100764299", "url": "https://www.ncbi.nlm.nih.gov/gene/100764299", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031389", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031389", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100764299", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764299", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KAE4", "url": "https://www.orthodb.org/?gene=A0A9J7KAE4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR35544", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35544", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35544:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35544:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15679", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15679", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035292393", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035292393", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KAE4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAE4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KAE4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAE4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAKNKFKGQKSSNVFHIASQKTFKVKNKAKPVTTNLKKINIMNDEKVNRMNTAFINIQKELANFSKSLSIKSMQKELQHHENEPANVDEATRLMAQL", "length": 97, "header": "tr|A0A9J7KAE4-1|A0A9J7KAE4_CRIGR Isoform 1 of Ribosomal biogenesis factor-like OS=Cricetulus griseus OX=10029 GN=LOC100764299 PE=4 SV=1 CANONICAL=A0A9J7KAE4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KAE4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAE4/entry", "sequence": { "sequence": "MAKNKFKGQKSSNVFHIASQKTFKVKNKAKPVTTNLKKINIMNDEKVNRMNTAFINIQKELANFSKSLSIKSMQKELQHHENEPANVDEATRLMAQL", "length": 97, "header": "tr|A0A9J7KAE4-1|A0A9J7KAE4_CRIGR Isoform 1 of Ribosomal biogenesis factor-like OS=Cricetulus griseus OX=10029 GN=LOC100764299 PE=4 SV=1 CANONICAL=A0A9J7KAE4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035306589", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306589" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KAI8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAI8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100762276", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAI8", "locus": {} } ], "crossref": [ { "id": "cd16269", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16269", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100762276", "url": "https://www.ncbi.nlm.nih.gov/gene/100762276", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003191", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003191", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036543", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036543", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037684", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037684", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762276", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762276", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KAI8", "url": "https://www.orthodb.org/?gene=A0A9J7KAI8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10751", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10751", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02841", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02841", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035306589", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306589", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KAI8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAI8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KAI8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAI8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGLADYGHMGEFATGLLIQEMANEAAKDNPGNLALDIATSQISTITQILITQKKVGQMESLQDQDLDSDFLAQIXEFCSYVSSCHKVKYLSGGIKVNGERLKSSVVTYVTTICSGSLPCIENAVLALSQTENAAAVQKAIAHYDQXVSQKLQLPTETLQELMELHRASEKAIKIFMDNSFKDVNQVFMTQLVTELETTQEEFLKKNLLASSDRYSALLPDIFSPLEENMKQGINYIPWVFPPVFLNTQKLKKKNYEKPRKGVQAEEVLQKFLQSKDDVTDAILQIDQELTVKEKESEVERMKAEAAQATAKMQEEMQQKIEQLLKQKEKSHEEHMKQLTEMMEKVQAQMREMQQRNEQLQQQIKNQEEHMKQFTEVMEKAQAQNEKMQEKNKKLMQQKKKFHEEHRKQLTEMMEKAQAQNKKMQQLVEQLLQHKEKSHERHMKQLTEVMEKSQAQMKEMQQRNEQLLQQKGESDEDHRKELTEKVDEAQAKLRELQEKNELLQHQKKRQEEQLTQEKRKRHHEYEHLRLVFKLLKLFSSFKIL", "length": 543, "header": "tr|A0A9J7KAI8-1|A0A9J7KAI8_CRIGR Isoform 1 of LOW QUALITY PROTEIN: guanylate-binding protein 1-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100762276 PE=4 SV=1 CANONICAL=A0A9J7KAI8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KAI8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAI8/entry", "sequence": { "sequence": "MGLADYGHMGEFATGLLIQEMANEAAKDNPGNLALDIATSQISTITQILITQKKVGQMESLQDQDLDSDFLAQIXEFCSYVSSCHKVKYLSGGIKVNGERLKSSVVTYVTTICSGSLPCIENAVLALSQTENAAAVQKAIAHYDQXVSQKLQLPTETLQELMELHRASEKAIKIFMDNSFKDVNQVFMTQLVTELETTQEEFLKKNLLASSDRYSALLPDIFSPLEENMKQGINYIPWVFPPVFLNTQKLKKKNYEKPRKGVQAEEVLQKFLQSKDDVTDAILQIDQELTVKEKESEVERMKAEAAQATAKMQEEMQQKIEQLLKQKEKSHEEHMKQLTEMMEKVQAQMREMQQRNEQLQQQIKNQEEHMKQFTEVMEKAQAQNEKMQEKNKKLMQQKKKFHEEHRKQLTEMMEKAQAQNKKMQQLVEQLLQHKEKSHERHMKQLTEVMEKSQAQMKEMQQRNEQLLQQKGESDEDHRKELTEKVDEAQAKLRELQEKNELLQHQKKRQEEQLTQEKRKRHHEYEHLRLVFKLLKLFSSFKIL", "length": 543, "header": "tr|A0A9J7KAI8-1|A0A9J7KAI8_CRIGR Isoform 1 of LOW QUALITY PROTEIN: guanylate-binding protein 1-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100762276 PE=4 SV=1 CANONICAL=A0A9J7KAI8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KAI8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAI8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"https://www.uniprot.org/uniprotkb/A0A9J7KAI8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cellular response to type II interferon", "id": "GO:0071346", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071346", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KAI8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAI8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7KAI8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAI8" }, { "id": "PF02841", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02841" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Guanylate-binding protein/Atlastin C-terminal", "eco_id": "ECO_0000259", 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Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613762.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_003500015.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003500015", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500015" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KAQ2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAQ2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH20orf202", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAQ2", "locus": {} } ], "crossref": [ { "id": "A0A9J7KAQ2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KAQ2", "database": "AlphaFoldDB", "categories": [] }, { "id": "100768041", "url": "https://www.ncbi.nlm.nih.gov/gene/100768041", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR051771", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051771", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768041", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768041", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RAESAHW", "url": "https://omabrowser.org/oma/group/RAESAHW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7KAQ2", "url": "https://www.orthodb.org/?gene=A0A9J7KAQ2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR32289", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32289", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32289:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32289:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_003500015", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003500015", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KAQ2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAQ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KAQ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAQ2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEKPEEPAVTLGQTLEWLRKELAEMQIQDQQLLLSLRHLQSLLEELRAESTHWEDTRPSRNTSPFRARLGSEGRSCQPVSRELAQLLQREESRRSSLP", "length": 98, "header": "tr|A0A9J7KAQ2-1|A0A9J7KAQ2_CRIGR Isoform 1 of Uncharacterized protein C20orf202 homolog OS=Cricetulus griseus OX=10029 GN=CUNH20orf202 PE=4 SV=1 CANONICAL=A0A9J7KAQ2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KAQ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAQ2/entry", "sequence": { "sequence": "MEKPEEPAVTLGQTLEWLRKELAEMQIQDQQLLLSLRHLQSLLEELRAESTHWEDTRPSRNTSPFRARLGSEGRSCQPVSRELAQLLQREESRRSSLP", "length": 98, "header": "tr|A0A9J7KAQ2-1|A0A9J7KAQ2_CRIGR Isoform 1 of Uncharacterized protein C20orf202 homolog OS=Cricetulus griseus OX=10029 GN=CUNH20orf202 PE=4 SV=1 CANONICAL=A0A9J7KAQ2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KAQ2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAQ2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KAQ2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAQ2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100768041", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768041", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A571BEE7-1", "protein_name": "Transmembrane 74B, opposite strand", "gene_name": "Tmem74bos", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEMPGEPAASLGQTLEWLREELAEMQIQDQKLLLTLRHLHSLLEELRAESTHWQDTRPSRNTSPFRARLGSEGRACQPVPRQLTELLRGEKSRRSSLP", "length": 98 }, "evidence": [ { "id": "A0A9J7KAQ2", "url": "https://omabrowser.org/oma/group/A0A9J7KAQ2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0AAA9S4X9-1", "protein_name": "Chromosome 20 open reading frame 202", "gene_name": "C13H20orf202", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKTKEEPTSSLGQTLEWLRKELTEMQDQDQRLLLTLRHLHSVLEELRTESVQWEDARSSGGTSPIRARAGSEGRGRQPFPSRRLAHLLQGVDSRRSSLP", "length": 99 }, "evidence": [ { "id": "A0A9J7KAQ2", "url": "https://omabrowser.org/oma/group/A0A9J7KAQ2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A1L168-1", "protein_name": "Uncharacterized protein C20orf202", "gene_name": "C20orf202", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKIAEEPSPSLGQTLEWLRKELSEMQIQDQSLLLTLRHLHSVLEELRADSAHWEDARSSGGTSPIRARAGSEGRGCQPVCSRGLAQLLRGEDSRRSSLP", "length": 99 }, "evidence": [ { "id": "A0A9J7KAQ2", "url": "https://omabrowser.org/oma/group/A0A9J7KAQ2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "F1S873-1", "protein_name": "Chromosome 17 C20orf202 homolog", "gene_name": "C17H20orf202", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MFKSQVPRAHHQVSVKVSPKDTEMKTAEEPTSSLGQILEWLRKELAEMQVQDQRLLLTLRHLHSILEELRAESAHWEDARSSGGTSPIRARADSEGRGRQPFSSRGLAHLLQGVDSRRSSLP", "length": 122 }, "evidence": [ { "id": "A0A9J7KAQ2", "url": "https://omabrowser.org/oma/group/A0A9J7KAQ2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 61, "end_pos": 63, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 61, "end_pos": 63 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7KAS8-1", "uniprot_ac": "A0A9J7KAS8", "uniprot_id": "A0A9J7KAS8_CRIGR", "mass": { "chemical_mass": 75649.0, "monoisotopic_mass": 75649.0 }, "refseq": { "ac": "XP_035302612", "name": "heat shock 70 kDa protein 12B isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302612" }, "gene_names": [ { "name": "Hspa12b", "type": "recommended", "evidence": [ { "id": "A0A9J7KAS8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAS8" } ] }, { "name": "Hspa12b", "type": "synonym", "evidence": [ { "id": "XP_035302612", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302612" } ] } ], "protein_names": [ { "name": "Heat shock 70 kDa protein 12B isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7KAS8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAS8/entry#names_and_taxonomy" } ] }, { "name": "heat shock 70 kDa protein 12B isoform X1", "type": "synonym", "evidence": [ { "id": "XP_035302612", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302612" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035302612", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302612" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KAS8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAS8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Hspa12b", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAS8", "locus": {} } ], "crossref": [ { "id": "A0A9J7KAS8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KAS8", "database": "AlphaFoldDB", "categories": [] }, { "id": "100766967", "url": "https://www.ncbi.nlm.nih.gov/gene/100766967", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR043129", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043129", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100766967", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766967", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KAS8", "url": "https://www.orthodb.org/?gene=A0A9J7KAS8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14187", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14187", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14187:SF39", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14187:SF39", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_035302612", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302612", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H400", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H400", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H400-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H400-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KAS8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAS8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KAS8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAS8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLTVPEMGLQGLYISSSPERSPVPSPPGSPRTQESCGIAPLTPSQSPKPEARAPQQASFSVVVAIDFGTTASGYAFSFASDPEAIHMMRKWEGGDPGVANQKTPTCLLLTPEGVFHSFGYTARDYYHDLDPEEARDWLYFEKFKMKIHSATDLTLKTQLEAVNGKQMLALEVFAHALRFFKEHALQELREQSPGVLEKDTVRWVLTVPAIWKQPAKQFMREAAYLAGLVSREDAEKLLIALEPEAASVYCRKLRLHQLMDLSSRTVGGGRLGERRSIDSSFRHAREQLRRSRHSRTFLVESGVGELWAEMQEGDRYMVADCGGGTVDLTVHQLEQPHGTLKELYKASGGPYGAVGVDLAFEQLLCRIFGEDFIAKFKRQRPAAWVDLTIAFEARKRTAGPHRAGALNISLPFSFIDFYRKQRGHNVETALRRSSVNFVKWSSQGMLRMSCEAMNELFQPTVSGIIQHIEMLLARPEVQGVKLLFLVGGFAESAVLQHAVQTALGTRGLRVVVPHDVGLTILKGAVLFGQAPGVVRVRRSPLTYGVGVLNRFVPGHHPPEKLLVRDGRRWCTDVFERFVAAEQSVALGEEVRRSYCPARPGQRRVLINLYCCAAEDARFITDPGVRKCGALSLELEPEDTGTSPNRREIRAAMQFGDTEIKVTAVDVSTNRSVRAAIDFLSN", "length": 681, "header": "tr|A0A9J7KAS8-1|A0A9J7KAS8_CRIGR Isoform 1 of Heat shock 70 kDa protein 12B isoform X1 OS=Cricetulus griseus OX=10029 GN=Hspa12b PE=4 SV=1 CANONICAL=A0A9J7KAS8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H400-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H400/entry", "sequence": { "sequence": "MLTVPEMGLQGLYISSSPERSPVPSPPGSPRTQESCGIAPLTPSQSPKPEARAPQQASFSVVVAIDFGTTASGYAFSFASDPEAIHMMRKWEGGDPGVANQKTPTCLLLTPEGVFHSFGYTARDYYHDLDPEEARDWLYFEKFKMKIHSATDLTLKTQLEAVNGKQMLALEVFAHALRFFKEHALQLREQSPGVLEKDTVRWVLTVPAIWKQPAKQFMREAAYLAGLVSREDAEKLLIALEPEAASVYCRKLRLHQLMDLSSRTVGGGRLGERRSIDSSFRHAREQLRRSRHSRTFLVESGVGELWAEMQEGDRYMVADCGGGTVDLTVHQLEQPHGTLKELYKASGGPYGAVGVDLAFEQLLCRIFGEDFIAKFKRQRPAAWVDLTIAFEARKRTAGPHRAGALNISLPFSFIDFYRKQRGHNVETALRRSSVNFVKWSSQGMLRMSCEAMNELFQPTVSGIIQHIEMLLARPEVQGVKLLFLVGGFAESAVLQHAVQTALGTRGLRVVVPHDVGLTILKGAVLFGQAPGVVRVRRSPLTYGVGVLNRFVPGHHPPEKLLVRDGRRWCTDVFERFVAAEQSVALGEEVRRSYCPARPGQRRVLINLYCCAAEDARFITDPGVRKCGALSLELEPEDTGTSPNRREIRAAMQFGDTEIKVTAVDVSTNRSVRAAIDFLSN", "length": 680, "header": "tr|A0A9J7H400-1|A0A9J7H400_CRIGR Computationally mapped isoform of Heat shock 70 kDa protein 12B isoform X2 OS=Cricetulus griseus OX=10029 GN=Hspa12b PE=4 SV=1 CANONICAL=A0A9J7KAS8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KAS8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAS8/entry", "sequence": { "sequence": "MLTVPEMGLQGLYISSSPERSPVPSPPGSPRTQESCGIAPLTPSQSPKPEARAPQQASFSVVVAIDFGTTASGYAFSFASDPEAIHMMRKWEGGDPGVANQKTPTCLLLTPEGVFHSFGYTARDYYHDLDPEEARDWLYFEKFKMKIHSATDLTLKTQLEAVNGKQMLALEVFAHALRFFKEHALQELREQSPGVLEKDTVRWVLTVPAIWKQPAKQFMREAAYLAGLVSREDAEKLLIALEPEAASVYCRKLRLHQLMDLSSRTVGGGRLGERRSIDSSFRHAREQLRRSRHSRTFLVESGVGELWAEMQEGDRYMVADCGGGTVDLTVHQLEQPHGTLKELYKASGGPYGAVGVDLAFEQLLCRIFGEDFIAKFKRQRPAAWVDLTIAFEARKRTAGPHRAGALNISLPFSFIDFYRKQRGHNVETALRRSSVNFVKWSSQGMLRMSCEAMNELFQPTVSGIIQHIEMLLARPEVQGVKLLFLVGGFAESAVLQHAVQTALGTRGLRVVVPHDVGLTILKGAVLFGQAPGVVRVRRSPLTYGVGVLNRFVPGHHPPEKLLVRDGRRWCTDVFERFVAAEQSVALGEEVRRSYCPARPGQRRVLINLYCCAAEDARFITDPGVRKCGALSLELEPEDTGTSPNRREIRAAMQFGDTEIKVTAVDVSTNRSVRAAIDFLSN", "length": 681, "header": "tr|A0A9J7KAS8-1|A0A9J7KAS8_CRIGR Isoform 1 of Heat shock 70 kDa protein 12B isoform X1 OS=Cricetulus griseus OX=10029 GN=Hspa12b PE=4 SV=1 CANONICAL=A0A9J7KAS8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KAS8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAS8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100766967", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766967", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 407, "end_pos": 409, "annotation": "n_glycosylation_sequon" }, { "start_pos": 669, "end_pos": 671, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { 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This record is derived from a genomic sequence (NW_003613923.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003502978", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502978" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KAT1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAT1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Etv3l", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAT1", "locus": {} } ], "crossref": [ { "id": "100760586", "url": "https://www.ncbi.nlm.nih.gov/gene/100760586", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000418", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000418", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036388", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036388", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036390", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036390", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046328", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046328", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100760586", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760586", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NCPLWEV", "url": "https://omabrowser.org/oma/group/NCPLWEV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7KAT1", "url": "https://www.orthodb.org/?gene=A0A9J7KAT1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11849", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11849", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11849:SF306", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11849:SF306", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00178", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00178", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003502978", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003502978", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KAT1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAT1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KAT1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAT1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MHCNCFLEGILTTPVNYWISGLAFPNWAYKAESSPGSRQIQLWHFILALLQKDEFRHVIAWQQGEYGEFVIKDPDEVARLWGRRKCKPQMNYDKLSRALRYYYNKKILHKTKGKRFTYKFNFSKLSVANCPPWKVWAPSTPHLLLGSTALCQPALVPVAVQSEPLHSTLYTHWATETQLAGERTSWEPLETSGEKGNSSFDGFGSALGPGWQGSCCCFLNLQGDLPSVASFTPAPRLRCNWTHLSGPILPPFSSEQPLSGSSKPGPRLPGPLCMPGAWHFPGLPLLARLRQGTSERLQRRFLRPEELVVNPGPKGHLDSNEGLSSEILGLRPGKGTSMFHNPENLRAMWPLDPS", "length": 354, "header": "tr|A0A9J7KAT1-1|A0A9J7KAT1_CRIGR Isoform 1 of ETS translocation variant 3-like protein OS=Cricetulus griseus OX=10029 GN=Etv3l PE=3 SV=1 CANONICAL=A0A9J7KAT1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KAT1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAT1/entry", "sequence": { "sequence": "MHCNCFLEGILTTPVNYWISGLAFPNWAYKAESSPGSRQIQLWHFILALLQKDEFRHVIAWQQGEYGEFVIKDPDEVARLWGRRKCKPQMNYDKLSRALRYYYNKKILHKTKGKRFTYKFNFSKLSVANCPPWKVWAPSTPHLLLGSTALCQPALVPVAVQSEPLHSTLYTHWATETQLAGERTSWEPLETSGEKGNSSFDGFGSALGPGWQGSCCCFLNLQGDLPSVASFTPAPRLRCNWTHLSGPILPPFSSEQPLSGSSKPGPRLPGPLCMPGAWHFPGLPLLARLRQGTSERLQRRFLRPEELVVNPGPKGHLDSNEGLSSEILGLRPGKGTSMFHNPENLRAMWPLDPS", "length": 354, "header": "tr|A0A9J7KAT1-1|A0A9J7KAT1_CRIGR Isoform 1 of ETS translocation variant 3-like protein OS=Cricetulus griseus OX=10029 GN=Etv3l PE=3 SV=1 CANONICAL=A0A9J7KAT1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035307324", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307324" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KB19", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB19" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100771134", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB19", "locus": {} } ], "crossref": [ { "id": "A0A9J7KB19", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KB19", "database": "AlphaFoldDB", "categories": [] }, { "id": "100771134", "url": "https://www.ncbi.nlm.nih.gov/gene/100771134", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026524", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026524", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR060372", "url": "https://www.ebi.ac.uk/interpro/entry/IPR060372", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100771134", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771134", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KB19", "url": "https://www.orthodb.org/?gene=A0A9J7KB19", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR32286", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32286", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32286:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32286:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF28430", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28430", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035307324", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307324", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KB19", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB19", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KB19-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB19-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAVIVALHLLLFWCGCPRAAADSIQIIYAISGESAELPCPSPPSLLGGQLLSWFRSPAGGSSTILVAQIQVDRPVSDLGKPENDSRFKVLGNYSLLLEGPRDEDAGRYWCTVMDQNRKYQNWRVYDVSVLKGSQFSVKSPDGPSCSALLCSVVPARRLDSVTWLEGRNPVRGHAQYFWGEGAALLLVCPAEGLPETRGRRPRNIRCLMPQNKRFSFSLAAAPTEPSPTTCAPVQSWDVPRVLILLFTAGQGVTIIVLSIVLCRRRAQASRDREPSIPHFKPEVQVYENIHLARLG", "length": 295, "header": "tr|A0A9J7KB19-1|A0A9J7KB19_CRIGR Isoform 1 of Lymphocyte antigen 6 complex locus protein G6f OS=Cricetulus griseus OX=10029 GN=LOC100771134 PE=4 SV=1 CANONICAL=A0A9J7KB19-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KB19-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB19/entry", "sequence": { "sequence": "MAVIVALHLLLFWCGCPRAAADSIQIIYAISGESAELPCPSPPSLLGGQLLSWFRSPAGGSSTILVAQIQVDRPVSDLGKPENDSRFKVLGNYSLLLEGPRDEDAGRYWCTVMDQNRKYQNWRVYDVSVLKGSQFSVKSPDGPSCSALLCSVVPARRLDSVTWLEGRNPVRGHAQYFWGEGAALLLVCPAEGLPETRGRRPRNIRCLMPQNKRFSFSLAAAPTEPSPTTCAPVQSWDVPRVLILLFTAGQGVTIIVLSIVLCRRRAQASRDREPSIPHFKPEVQVYENIHLARLG", "length": 295, "header": "tr|A0A9J7KB19-1|A0A9J7KB19_CRIGR Isoform 1 of Lymphocyte antigen 6 complex locus protein G6f OS=Cricetulus griseus OX=10029 GN=LOC100771134 PE=4 SV=1 CANONICAL=A0A9J7KB19-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7KB24-1", "uniprot_ac": "A0A9J7KB24", "uniprot_id": "A0A9J7KB24_CRIGR", "mass": { "chemical_mass": 50854.0, "monoisotopic_mass": 50854.0 }, "refseq": { "ac": "XP_035307344", "name": "zinc finger protein 844-like isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307344" }, "gene_names": [ { "name": "LOC100773501", "type": "recommended", "evidence": [ { "id": "A0A9J7KB24", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB24" } ] }, { "name": "LOC100773501", "type": "synonym", "evidence": [ { "id": "XP_035307344", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307344" } ] } ], "protein_names": [ { "name": "Zinc finger protein 844-like isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7KB24", "database": "UniProtKB", "url": 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035307344", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307344" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KB24", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB24" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100773501", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB24", "locus": {} } ], "crossref": [ { "id": "A0A9J7KB24", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KB24", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100773501", "url": "https://www.ncbi.nlm.nih.gov/gene/100773501", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039938", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039938", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100773501", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773501", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KB24", "url": "https://www.orthodb.org/?gene=A0A9J7KB24", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14947", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14947", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14947:SF26", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14947:SF26", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035307344", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307344", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KB24", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB24", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KB24-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB24-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLDLRLKFKAVSELQGSPLQEGPDGAGTSLLRSKGLAALDIGSVMECAHKGPCALEEEHCFFCWYGGCFIVPFALDMAVDEDHDVFAFDHLSGVGDGEGEENNSVVEHPELESLDNSEVTCDDVHVNFTQEEWALLDHSQKNLYKDVMLETYRNLIAIGMKEVIVERKPMNVINVVKPLQTTVVLKYIEELTLEKNPMNVMNVGKPFHTIVVSKSIKEPILERNPMNVINVEKPFHTTAVSNYIKEFILERNPMNAINVGKPLHVTVMFKDIKEFTLERNPINVINVIKLSHNRKISKYIDKPILERNPMNVINVGKPFCDTVVYKYIKEPILERNPMNVINVGKSFHTTVVSNYIKELIQERSPMNVISVGKPFHVTVMFKYIKEFILGRSLMIVINVVKPLHVTVISKYIKEPILERNPMNVRNVAKPFHNTVIFKFIKQFILE", "length": 446, "header": "tr|A0A9J7KB24-1|A0A9J7KB24_CRIGR Isoform 1 of Zinc finger protein 844-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100773501 PE=4 SV=1 CANONICAL=A0A9J7KB24-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KB24-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB24/entry", "sequence": { "sequence": "MLDLRLKFKAVSELQGSPLQEGPDGAGTSLLRSKGLAALDIGSVMECAHKGPCALEEEHCFFCWYGGCFIVPFALDMAVDEDHDVFAFDHLSGVGDGEGEENNSVVEHPELESLDNSEVTCDDVHVNFTQEEWALLDHSQKNLYKDVMLETYRNLIAIGMKEVIVERKPMNVINVVKPLQTTVVLKYIEELTLEKNPMNVMNVGKPFHTIVVSKSIKEPILERNPMNVINVEKPFHTTAVSNYIKEFILERNPMNAINVGKPLHVTVMFKDIKEFTLERNPINVINVIKLSHNRKISKYIDKPILERNPMNVINVGKPFCDTVVYKYIKEPILERNPMNVINVGKSFHTTVVSNYIKELIQERSPMNVISVGKPFHVTVMFKYIKEFILGRSLMIVINVVKPLHVTVISKYIKEPILERNPMNVRNVAKPFHNTVIFKFIKQFILE", "length": 446, "header": "tr|A0A9J7KB24-1|A0A9J7KB24_CRIGR Isoform 1 of Zinc finger protein 844-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100773501 PE=4 SV=1 CANONICAL=A0A9J7KB24-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035307431", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307431" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KB47", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB47" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113832815", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB47", "locus": {} } ], "crossref": [ { "id": "A0A9J7KB47", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KB47", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd06376", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06376", "database": "CDD", "categories": [ "Protein 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"MVYEGKRSASCPCFFLLTAKFYWILTMMQRTHSQEYAHSIRMDGDIILGGLFPVHAKGERGVPCGELKKEKGIHRLEAMLYAIDQINKDPDLLSNITLGVRILDTCSRDTYALEQSLTFVQALIEKDASDVKCANGDPPIFTKPDKISGVIGAAASSVSIMVANILRLFKIPQISYASTAPELSDNTRYDFFSRVVPPDSYQAQAMVDIVTALGWNYVSTLASEGNYGESGVEAFTQISREIGGVCIAQSQKIPREPRPGEFEKIIKRLLETPNARAVIMFANEDDIRRILEAAKKLNQSGHFLWIGSDSWGSKIAPVYQQEEIAEGAVTILPKRASIDGFDRYFRSRTLANNRRNVWFAEFWEENFGCKLGSHGKRNSHIKKCTGLERIARDSSYEQEGKVQFVIDAVYSMAYALHNMHKELCPGYIGLCPRMGTIDGKELLGYIRAVNFNGSAGTPVTFNENGDAPGRYDIFQYQINNKSTEYKIIGHWTNQLHLKVEDMQWANREHTHPASVCSLPCKPGERKKTVKGVPCCWHCERCEGYNYQVDELSCELCPLDQRPNINRTGCQRIPIIKLEWHSPWAVVPVFIAILGIIATTFVIVTFVRYNDTPIVRASGRELSYVLLTGIFLCYSITFLMIAAPDTIICSFRRIFLGLGMCFSYAALLTKTNRIHRIFEQGKKSVTAPKFISPASQLVITFSLISVQLLGVFVWFVVDPPHTIIDYGEQRTLDPENARGVLKCDISDLSLICSLGYSILLMVTCTVYAIKTRGVPETFNEAKPIGFTMYTTCIIWLAFIPIFFGTAQSAEKMYIQTTTLTVSMSLSASVSLGMLYMPKVYIIIFHPEQNVQKRKRSFKAVVTAATMQSKLIQKGNDRPNGEVKSELCESLETNSKSSVDFQMVKSGSTS", "length": 908, "header": "tr|A0A9J7KB47-1|A0A9J7KB47_CRIGR Isoform 1 of Metabotropic glutamate receptor 8 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC113832815 PE=3 SV=1 CANONICAL=A0A9J7KB47-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KB47", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB47" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 298, "end_pos": 300, "annotation": "n_glycosylation_sequon" }, { "start_pos": 452, "end_pos": 454, "annotation": "n_glycosylation_sequon" }, { "start_pos": 480, "end_pos": 482, "annotation": "n_glycosylation_sequon" }, { "start_pos": 565, "end_pos": 567, "annotation": "n_glycosylation_sequon" }, { "start_pos": 609, "end_pos": 611, "annotation": "n_glycosylation_sequon" }, { "start_pos": 95, "end_pos": 97, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7KB47", "database": "UniProtKB", "url": 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"yes" } }, { "uniprot_canonical_ac": "A0A9J7KB49-1", "uniprot_ac": "A0A9J7KB49", "uniprot_id": "A0A9J7KB49_CRIGR", "mass": { "chemical_mass": 17304.0, "monoisotopic_mass": 17304.0 }, "refseq": { "ac": "XP_035300549", "name": "chemokine-like protein TAFA-4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300549" }, "gene_names": [ { "name": "Tafa4", "type": "recommended", "evidence": [ { "id": "A0A9J7KB49", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB49" } ] }, { "name": "Tafa4", "type": "synonym", "evidence": [ { "id": "XP_035300549", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300549" } ] } ], "protein_names": [ { "name": "Chemokine-like protein TAFA-4", "type": "synonym", "evidence": [ { "id": "A0A9J7KB49", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB49/entry#names_and_taxonomy" } ] }, { "name": "chemokine-like protein TAFA-4", "type": "synonym", "evidence": [ { "id": "XP_035300549", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300549" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 15% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613585.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035300549", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300549" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KB49", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB49" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tafa4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB49", "locus": {} } ], "crossref": [ { "id": "A0A9J7KB49", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KB49", "database": "AlphaFoldDB", "categories": [] }, { "id": "118238794", "url": "https://www.ncbi.nlm.nih.gov/gene/118238794", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR020350", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020350", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051743", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051743", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:118238794", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118238794", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KB49", "url": "https://www.orthodb.org/?gene=A0A9J7KB49", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31770", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31770", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31770:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31770:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12020", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12020", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035300549", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300549", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KB49", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB49", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KB49-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB49-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRVCARWVLLSHWLLLAYVLMVCCKLTSASSQHLRGHAGHHLIKQGTCEVVAVHRCCNKNRIEERSQTVKCSCFPGQVAGTTRAQPSCVEASIVIEKWWCHMDPCLEGEDCRVLPDSSGWSCSSGNKVKTTKKFSLPNPSMPAFQVPPDTPSHPDD", "length": 156, "header": "tr|A0A9J7KB49-1|A0A9J7KB49_CRIGR Isoform 1 of Chemokine-like protein TAFA-4 OS=Cricetulus griseus OX=10029 GN=Tafa4 PE=3 SV=1 CANONICAL=A0A9J7KB49-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KB49-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB49/entry", "sequence": { "sequence": "MRVCARWVLLSHWLLLAYVLMVCCKLTSASSQHLRGHAGHHLIKQGTCEVVAVHRCCNKNRIEERSQTVKCSCFPGQVAGTTRAQPSCVEASIVIEKWWCHMDPCLEGEDCRVLPDSSGWSCSSGNKVKTTKKFSLPNPSMPAFQVPPDTPSHPDD", "length": 156, "header": "tr|A0A9J7KB49-1|A0A9J7KB49_CRIGR Isoform 1 of Chemokine-like protein TAFA-4 OS=Cricetulus griseus OX=10029 GN=Tafa4 PE=3 SV=1 CANONICAL=A0A9J7KB49-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"protein_names": [ { "name": "Protein KRBA1", "type": "synonym", "evidence": [ { "id": "A0A9J7KB59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB59/entry#names_and_taxonomy" } ] }, { "name": "protein KRBA1", "type": "synonym", "evidence": [ { "id": "XP_035304956", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304956" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 4% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048601.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035304956", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304956" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KB59", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB59" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Krba1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB59", "locus": {} } ], "crossref": [ { "id": "A0A9J7KB59", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KB59", "database": "AlphaFoldDB", "categories": [] }, { "id": "100774574", "url": "https://www.ncbi.nlm.nih.gov/gene/100774574", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029317", 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This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035303189", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303189" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KB90", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB90" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Smim5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB90", "locus": {} } ], "crossref": [ { "id": "A0A9J7KB90", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KB90", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd20254", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20254", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100756265", "url": "https://www.ncbi.nlm.nih.gov/gene/100756265", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031671", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031671", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047133", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047133", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100756265", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756265", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HCCCCGK", "url": "https://omabrowser.org/oma/group/HCCCCGK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7KB90", "url": "https://www.orthodb.org/?gene=A0A9J7KB90", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR37344", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37344", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR37344:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37344:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15831", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15831", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035303189", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303189", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KB90", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB90", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KB90-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB90-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAATDFEEEIRSVTERLLLKLRGLPQADPVEVVAFSIIILFTATVLLLMLLACSYCCVHCCCPERRARKVAVMTIRTR", "length": 78, "header": "tr|A0A9J7KB90-1|A0A9J7KB90_CRIGR Isoform 1 of Small integral membrane protein 5 OS=Cricetulus griseus OX=10029 GN=Smim5 PE=4 SV=1 CANONICAL=A0A9J7KB90-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KB90-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB90/entry", "sequence": { "sequence": "MAATDFEEEIRSVTERLLLKLRGLPQADPVEVVAFSIIILFTATVLLLMLLACSYCCVHCCCPERRARKVAVMTIRTR", "length": 78, "header": "tr|A0A9J7KB90-1|A0A9J7KB90_CRIGR Isoform 1 of Small integral membrane protein 5 OS=Cricetulus griseus OX=10029 GN=Smim5 PE=4 SV=1 CANONICAL=A0A9J7KB90-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KB90", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB90" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KB90", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB90" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100756265", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756265", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A286ZNH1-1", "protein_name": "Small integral membrane protein 5", "gene_name": "SMIM5", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTAADFVQEMHSVWERLLLKLQRLPQAEPVEIATFSVLVIFAATVVLLLLVAICYCCVQCCCPDRRGRKVQVRPMTPLQGTRR", "length": 83 }, "evidence": [ { "id": "A0A9J7KB90", "url": "https://omabrowser.org/oma/group/A0A9J7KB90/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "E1BAR0-1", "protein_name": "Small integral membrane protein 5", "gene_name": "SMIM5", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAASKLMQEIHSIGDRLLLKLQRLPQAEPVEILAFSVLVVFTATVVLLLLIACGFCCCQYCWPRRRGRRTQVGPMTPP", "length": 78 }, "evidence": [ { "id": "A0A9J7KB90", "url": "https://omabrowser.org/oma/group/A0A9J7KB90/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E1C7Q5-1", "protein_name": "Small integral membrane protein 5", "gene_name": "SMIM5", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSSEAFLKEMQTIGEKLLLKLQKLPKADPVEIVSFCVVLLFIVTVLVLMIIACSCCCYSCCSCNEGPDHRRRKAQVRPTAHP", "length": 82 }, "evidence": [ { "id": "A0A9J7KB90", "url": "https://omabrowser.org/oma/group/A0A9J7KB90/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "M0R3V6-1", "protein_name": "Small integral membrane protein 5", "gene_name": "Smim5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAVTDFVEEIRSVGERLLLKLKELPQAEPVELVAFSIIVLFTATVLMLLLIACSWCCAHCCCSEGRDRKIPVRPRKPR", "length": 78 }, "evidence": [ { "id": "A0A9J7KB90", "url": "https://omabrowser.org/oma/group/A0A9J7KB90/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q71RC9-1", "protein_name": "Small integral membrane protein 5", "gene_name": "SMIM5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAATDFVQEMRAVGERLLLKLQRLPQAEPVEIVAFSVIILFTATVLLLLLIACSCCCTHCCCPERRGRKVQVQPTPP", "length": 77 }, "evidence": [ { "id": "A0A9J7KB90", "url": "https://omabrowser.org/oma/group/A0A9J7KB90/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8BT42-1", "protein_name": "Small integral membrane protein 5", "gene_name": "Smim5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAATDFVGEIRSVGERLLLKLQQLPQAEPVELVAFSIIVLFTATVLVLGLIACSCCCAHCCCSESRQRKIPVRPTKPR", "length": 78 }, "evidence": [ { "id": "A0A9J7KB90", "url": "https://omabrowser.org/oma/group/A0A9J7KB90/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KB90", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB90" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7KB92-1", "uniprot_ac": "A0A9J7KB92", "uniprot_id": "A0A9J7KB92_CRIGR", "mass": { "chemical_mass": 46776.0, "monoisotopic_mass": 46776.0 }, "refseq": { "ac": "XP_035305065", "name": "killer cell immunoglobulin-like receptor 3DL1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305065" }, "gene_names": [ { "name": "LOC107979912", "type": "recommended", "evidence": [ { "id": "A0A9J7KB92", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB92" } ] }, { "name": "LOC107979912", "type": "synonym", "evidence": [ { "id": "XP_035305065", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305065" } ] } ], "protein_names": [ { "name": "Killer cell immunoglobulin-like receptor 3DL1 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7KB92", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB92/entry#names_and_taxonomy" } ] }, { "name": "killer cell immunoglobulin-like receptor 3DL1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035305065", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305065" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 3% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035305065", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305065" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KB92", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB92" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC107979912", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB92", "locus": {} } ], "crossref": [ { "id": "A0A9J7KB92", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KB92", "database": "AlphaFoldDB", "categories": [] }, { "id": "107979912", "url": "https://www.ncbi.nlm.nih.gov/gene/107979912", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013151", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013151", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050412", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050412", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:107979912", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:107979912", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KB92", "url": "https://www.orthodb.org/?gene=A0A9J7KB92", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11738", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11738", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11738:SF113", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11738:SF113", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00047", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00047", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035305065", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305065", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KB92", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB92", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KB92-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB92-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLSVLLNLMCTGFFLVLRMLAQAGSHDKPSLSAHPSPVVVLGQRVELQCDSHSESDFFKLYKELGDPIPEVHERPFRDKTLLGPVTRAHGGTYRCYNYNHQYSNELSSHSDPLKIIISGIYKKPFLLVPYSNLVKSGEKVTLECHSEIMFDIFILTSHRKRIIKESCQHSAESHLGGSRAKFSMGPVTRDHAGSYTCYGSYNQTPYEWSESSDPVDIKITGLYKKPSLSAFMGPVLMSGENVTLVCSSDHPFDMFHLSGDGVPRGHGLPAVQSHNGTFQATFPLCPVTQAGNYRCYGSFRNSSHAWSSPSDPLCLSVTDNHRNLHILIGLSVTMVLVLLIVLLYSCCYAKKSKSREQANECRLSLNRQDPEREDVQEVTYLEFDQRTFKQKLTTPISQIPKEFSTHPSVYMEIRKL", "length": 416, "header": "tr|A0A9J7KB92-1|A0A9J7KB92_CRIGR Isoform 1 of Killer cell immunoglobulin-like receptor 3DL1 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC107979912 PE=4 SV=1 CANONICAL=A0A9J7KB92-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KB92-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB92/entry", "sequence": { "sequence": "MLSVLLNLMCTGFFLVLRMLAQAGSHDKPSLSAHPSPVVVLGQRVELQCDSHSESDFFKLYKELGDPIPEVHERPFRDKTLLGPVTRAHGGTYRCYNYNHQYSNELSSHSDPLKIIISGIYKKPFLLVPYSNLVKSGEKVTLECHSEIMFDIFILTSHRKRIIKESCQHSAESHLGGSRAKFSMGPVTRDHAGSYTCYGSYNQTPYEWSESSDPVDIKITGLYKKPSLSAFMGPVLMSGENVTLVCSSDHPFDMFHLSGDGVPRGHGLPAVQSHNGTFQATFPLCPVTQAGNYRCYGSFRNSSHAWSSPSDPLCLSVTDNHRNLHILIGLSVTMVLVLLIVLLYSCCYAKKSKSREQANECRLSLNRQDPEREDVQEVTYLEFDQRTFKQKLTTPISQIPKEFSTHPSVYMEIRKL", "length": 416, "header": "tr|A0A9J7KB92-1|A0A9J7KB92_CRIGR Isoform 1 of Killer cell immunoglobulin-like receptor 3DL1 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC107979912 PE=4 SV=1 CANONICAL=A0A9J7KB92-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035303460", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303460" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KBH0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBH0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Hmmr", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBH0", "locus": {} } ], "crossref": [ { "id": "A0A9J7KBH0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KBH0", "database": "AlphaFoldDB", "categories": [] }, { "id": "100772538", "url": "https://www.ncbi.nlm.nih.gov/gene/100772538", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026203", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026203", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031794", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031794", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772538", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772538", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KBH0", "url": "https://www.orthodb.org/?gene=A0A9J7KBH0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR18956", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18956", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR18956:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18956:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15905", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15905", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15908", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15908", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035303460", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303460", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H4Q6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4Q6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H4Q6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4Q6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H5G7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5G7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H5G7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5G7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KBH0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBH0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KBH0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBH0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTLRVRTGAGAGWEGDLAPPISVGGTPGCAPSPGAYDVKTSEVSKGPVSFQKSQRFKNQKESQQNLSVDKDTTLLASSKKAKTLVSKKEPQKNDKDLKRLEKEIRVLLQERGAQDKRIQDMESELEKTEAKLNVAVREKTSLSASNASLEKRLIELSRANELLKSKFSEDGHQKSMRTLSLELMKLRNKREAKMRSMLAKHEGMELKLQATQRDLVESQGKIVQLEGKLVSLEKEQIDEKSETEKLLEYIEEISCASDQVEKYKVDIAQLEEDLKEKDREISSLQLSLEETLTFSKQIEDLTVKCQLLEKERDDLVNKDRERAESHSAEIQIVTEKLVLEKQEYEKLQQKEMQIESLLQQEKELSASLQQQLSSFQEEMTSEKNVFREELKLALEELDAVQQKEEQSEKLVKQLEEETKATAEQLKRLDELLREKEAELEKSNAAHIHATLTLQERYNDTVQDLRDVTAQLESYKASTLKEIEDLKLENLTLQEKVTMAEKSVEDVQHQILTTETTNQEYTRMLLDLQNRSTLKEEEIKEITSTSLKKIADLQNQLRQQDEDFKKQLEEEEARKAEKEDAVAELTLESNKWRLLYEELYNKTKPFQQQLDAFEAEKQALLNERGATQEQLNKIRDSYAELLGHQNLKQKIKHVVKLKDENSQLKLEVSKLRSQLVKRKQNELRLQGELNKALGIKHFDPSKAFHHESKENFTLKTPLKEAAGPHSPPRARPTPAGSLRPKASHLDQQKIRPFRLTIKP", "length": 758, "header": "tr|A0A9J7KBH0-1|A0A9J7KBH0_CRIGR Isoform 1 of Hyaluronan mediated motility receptor isoform X4 OS=Cricetulus griseus OX=10029 GN=Hmmr PE=4 SV=1 CANONICAL=A0A9J7KBH0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H4Q6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4Q6/entry", "sequence": { "sequence": "MTLRVRTGAGAGWEGDLAPPISVGGTPGCAPSPGAYDVKTSEVSKGPVSFQKSQRFKNQKESQQNLSVDKDTTLLASSKKAKTLVSKKEPQKNDKDLKRLEKEIRVLLQERGAQDKRIQDMESELEKTEAKLNVAVREKTSLSASNASLEKRLIELSRANELLKSKFSEDGHQKSMRTLSLELMKLRNKREAKMRSMLAKHEGMELKLQATQRDLVESQGKIVQLEGKLVSLEKEQIDEKSETEKLLEYIEEISCASDQVEKYKVDIAQLEEDLKEKDREISSLQLSLEETLTFSKQIEDLTVKCQLLEKERDDLVNKDRERAESHSAEIQIVTEKLVLEKQEYEKLQQKEMQIESLLQQEKELSASLQQQLSSFQEEMTSEKNVFREELKLALEELDAVQQKEEQSEKLVKQLEEETKATAEQLKRLDELLREKEAELEKSNAAHIHATLTLQERYNDTVQDLRDVTAQLESYKASTLKEIEDLKLENLTLQEKVTMAEKSVEDVQHQILTTETTNQEYTRMLLDLQNRSTLKEEEIKEITSTSLKKIADLQNQLRQQDEDFKKQLEEEEARKAEKEDAVAELTLESNKWRLLYEELYNKTKPFQQQLDAFEAEKQALLNERGATQEQLNKIRDSYAELLGHQNLKQKIKHVVKLKDENSQLKLEVSKLRSQLVKRKQNELRLQGELNKALGIKHFDPSKAFHHESKENFTLKTPLKEGNTNCC", "length": 725, "header": "tr|A0A9J7H4Q6-1|A0A9J7H4Q6_CRIGR Computationally mapped isoform of Hyaluronan mediated motility receptor isoform X1 OS=Cricetulus griseus OX=10029 GN=Hmmr PE=4 SV=1 CANONICAL=A0A9J7KBH0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H5G7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5G7/entry", "sequence": { "sequence": "MSFPKAPLKRFNDPSGCAPSPGAYDVKTSEVSKGPVSFQKSQRFKNQKESQQNLSVDKDTTLLASSKKAKTLVSKKEPQKNDKDLKRLEKEIRVLLQERGAQDKRIQDMESELEKTEAKLNVAVREKTSLSASNASLEKRLIELSRANELLKSKFSEDGHQKSMRTLSLELMKLRNKREAKMRSMLAKHEGMELKLQATQRDLVESQGKIVQLEGKLVSLEKEQIDEKSETEKLLEYIEEISCASDQVEKYKVDIAQLEEDLKEKDREISSLQLSLEETLTFSKQIEDLTVKCQLLEKERDDLVNKDRERAESHSAEIQIVTEKLVLEKQEYEKLQQKEMQIESLLQQEKELSASLQQQLSSFQEEMTSEKNVFREELKLALEELDAVQQKEEQSEKLVKQLEEETKATAEQLKRLDELLREKEAELEKSNAAHIHATLTLQERYNDTVQDLRDVTAQLESYKASTLKEIEDLKLENLTLQEKVTMAEKSVEDVQHQILTTETTNQEYTRMLLDLQNRSTLKEEEIKEITSTSLKKIADLQNQLRQQDEDFKKQLEEEEARKAEKEDAVAELTLESNKWRLLYEELYNKTKPFQQQLDAFEAEKQALLNERGATQEQLNKIRDSYAELLGHQNLKQKIKHVVKLKDENSQLKLEVSKLRSQLVKRKQNELRLQGELNKALGIKHFDPSKAFHHESKENFTLKTPLKEAAGPHSPPRARPTPAGSLRPKASHLDQQKIRPFRLTIKP", "length": 746, "header": "tr|A0A9J7H5G7-1|A0A9J7H5G7_CRIGR Computationally mapped isoform of Hyaluronan mediated motility receptor isoform X5 OS=Cricetulus griseus OX=10029 GN=Hmmr PE=4 SV=1 CANONICAL=A0A9J7KBH0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KBH0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBH0/entry", "sequence": { "sequence": "MTLRVRTGAGAGWEGDLAPPISVGGTPGCAPSPGAYDVKTSEVSKGPVSFQKSQRFKNQKESQQNLSVDKDTTLLASSKKAKTLVSKKEPQKNDKDLKRLEKEIRVLLQERGAQDKRIQDMESELEKTEAKLNVAVREKTSLSASNASLEKRLIELSRANELLKSKFSEDGHQKSMRTLSLELMKLRNKREAKMRSMLAKHEGMELKLQATQRDLVESQGKIVQLEGKLVSLEKEQIDEKSETEKLLEYIEEISCASDQVEKYKVDIAQLEEDLKEKDREISSLQLSLEETLTFSKQIEDLTVKCQLLEKERDDLVNKDRERAESHSAEIQIVTEKLVLEKQEYEKLQQKEMQIESLLQQEKELSASLQQQLSSFQEEMTSEKNVFREELKLALEELDAVQQKEEQSEKLVKQLEEETKATAEQLKRLDELLREKEAELEKSNAAHIHATLTLQERYNDTVQDLRDVTAQLESYKASTLKEIEDLKLENLTLQEKVTMAEKSVEDVQHQILTTETTNQEYTRMLLDLQNRSTLKEEEIKEITSTSLKKIADLQNQLRQQDEDFKKQLEEEEARKAEKEDAVAELTLESNKWRLLYEELYNKTKPFQQQLDAFEAEKQALLNERGATQEQLNKIRDSYAELLGHQNLKQKIKHVVKLKDENSQLKLEVSKLRSQLVKRKQNELRLQGELNKALGIKHFDPSKAFHHESKENFTLKTPLKEAAGPHSPPRARPTPAGSLRPKASHLDQQKIRPFRLTIKP", "length": 758, "header": "tr|A0A9J7KBH0-1|A0A9J7KBH0_CRIGR Isoform 1 of Hyaluronan mediated motility receptor isoform X4 OS=Cricetulus griseus OX=10029 GN=Hmmr PE=4 SV=1 CANONICAL=A0A9J7KBH0-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 26, "start_aa": "Thr", "end_pos": 26, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr26", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 732, "start_aa": "Thr", "end_pos": 732, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr732", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KBH0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBH0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KBH0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBH0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100772538", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772538", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "spindle", "id": "GO:0005819", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005819", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KBH0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBH0" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KBH0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBH0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "hyaluronic acid binding", "id": "GO:0005540", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005540", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KBH0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBH0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 146, "end_pos": 148, "annotation": "n_glycosylation_sequon" }, { "start_pos": 458, "end_pos": 460, "annotation": "n_glycosylation_sequon" }, { "start_pos": 489, "end_pos": 491, "annotation": "n_glycosylation_sequon" }, { "start_pos": 529, "end_pos": 531, "annotation": "n_glycosylation_sequon" }, { "start_pos": 600, "end_pos": 602, "annotation": "n_glycosylation_sequon" }, { "start_pos": 65, "end_pos": 67, "annotation": "n_glycosylation_sequon" }, { "start_pos": 710, "end_pos": 712, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7KBH0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBH0" }, { "id": "PF15908", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15908" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Hyaluronan-mediated motility receptor C-terminal", "eco_id": "ECO_0000259", "start_pos": 564, "end_pos": 719, "start_aa": "Lys", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 26, 732 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 146, "end_pos": 148 }, { "start_pos": 458, "end_pos": 460 }, { "start_pos": 489, "end_pos": 491 }, { "start_pos": 529, "end_pos": 531 }, { "start_pos": 600, "end_pos": 602 }, { "start_pos": 65, "end_pos": 67 }, { "start_pos": 710, "end_pos": 712 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7KBJ2-1", "uniprot_ac": "A0A9J7KBJ2", "uniprot_id": "A0A9J7KBJ2_CRIGR", "mass": { "chemical_mass": 39476.0, "monoisotopic_mass": 39476.0 }, "refseq": { "ac": "XP_035305372", "name": "LOW QUALITY PROTEIN: IGF-like family receptor 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305372" }, "gene_names": [ { "name": "Igflr1", "type": "recommended", "evidence": [ { "id": "A0A9J7KBJ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBJ2" } ] }, { "name": "Igflr1", "type": "synonym", "evidence": [ { "id": "XP_035305372", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305372" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: IGF-like family receptor 1", "type": "synonym", "evidence": [ { "id": "XP_035305372", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305372" }, { "id": "A0A9J7KBJ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBJ2/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases frameshifts :: corrected 7 indels internal stop codons :: corrected 2 genomic stop codons ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: incomplete on the amino end.", "evidence": [ { "database": "RefSeq", "id": "XP_035305372", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305372" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KBJ2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBJ2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Igflr1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBJ2", "locus": {} } ], "crossref": [ { "id": "100775057", "url": "https://www.ncbi.nlm.nih.gov/gene/100775057", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR042355", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042355", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100775057", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100775057", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KBJ2", "url": "https://www.orthodb.org/?gene=A0A9J7KBJ2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14657", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14657", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14657:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14657:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_035305372", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305372", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KBJ2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBJ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KBJ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBJ2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "SDNPHQVLLRPCGPGLGERAHQLPGRPWDSPYPHAPLPGFPGKCCRSVGGSPVVTALRWQALLRWGPDVFFWTAPVLLPTRGLLLGKSLGSVAGHLEYWNLTIGAGCSSRLQHFGPPACPDYEFTPNWGLGDFGDTTAHPFKKCSSGYCNPSGTELWSXSNSGATSPAPMESHGGTQKQCXKKPIPPRDVCPLRVEEATKNRSXTKNKVSRPGFALPSELPLLLILAVVLXLFKRKAHAHPCPSLPFGDHSTSXTHWPSPGTLEGLDSRNTGQTPLPQPSSXELEGLASQPPSCLLDELKVLEELILLLYSELGPXAGHLAARYGVPATWSTFASSLRAPIEMVXGQLGTHLAQLGRADAQQVLPKLG", "length": 368, "header": "tr|A0A9J7KBJ2-1|A0A9J7KBJ2_CRIGR Isoform 1 of LOW QUALITY PROTEIN: IGF-like family receptor 1 OS=Cricetulus griseus OX=10029 GN=Igflr1 PE=4 SV=1 CANONICAL=A0A9J7KBJ2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KBJ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBJ2/entry", "sequence": { "sequence": "SDNPHQVLLRPCGPGLGERAHQLPGRPWDSPYPHAPLPGFPGKCCRSVGGSPVVTALRWQALLRWGPDVFFWTAPVLLPTRGLLLGKSLGSVAGHLEYWNLTIGAGCSSRLQHFGPPACPDYEFTPNWGLGDFGDTTAHPFKKCSSGYCNPSGTELWSXSNSGATSPAPMESHGGTQKQCXKKPIPPRDVCPLRVEEATKNRSXTKNKVSRPGFALPSELPLLLILAVVLXLFKRKAHAHPCPSLPFGDHSTSXTHWPSPGTLEGLDSRNTGQTPLPQPSSXELEGLASQPPSCLLDELKVLEELILLLYSELGPXAGHLAARYGVPATWSTFASSLRAPIEMVXGQLGTHLAQLGRADAQQVLPKLG", "length": 368, "header": "tr|A0A9J7KBJ2-1|A0A9J7KBJ2_CRIGR Isoform 1 of LOW QUALITY PROTEIN: IGF-like family receptor 1 OS=Cricetulus griseus OX=10029 GN=Igflr1 PE=4 SV=1 CANONICAL=A0A9J7KBJ2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003617534.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007653385", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007653385" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KBK4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBK4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100753996", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBK4", "locus": {} } ], "crossref": [ { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100753996", "url": "https://www.ncbi.nlm.nih.gov/gene/100753996", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050331", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050331", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100753996", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753996", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KBK4", "url": "https://www.orthodb.org/?gene=A0A9J7KBK4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16515", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16515", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16515:SF66", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16515:SF66", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13465", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13465", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007653385", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007653385", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KBK4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBK4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KBK4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBK4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNACAVNASQGLLSFRDVSVDLSQEEWECLDCAQRALYMDVMLENYSNLLFVENHRICDKCEKLLHPGTKHFIHDHEYVQEKTCKCDELGKVIHKSCQCTPYDTNDTTKNDKYRFANHIDTSVSTLNLNSHKNRNAGEEPCKYKDCAMCLNLCSIISQNEKHHKVMEEHKTTEYDKIIDSKTEITLKQMDPGEKPVQRRKCGKCLKTHSSFIRHQRTHTVEKLYKCTKCSKVFLHFLQLKVHYKIHAGEKLCLCTECGKWFHHTSNFEGNYRIHTGEKPYKCSECDKSFISAPSLRIYHRIHTGEKPLKCNECDKPFPTSSDYKNHQQIHTGDKPYKCSECDKYFTTKGSLRIHQRIHTGEKPYRCSECDKSFTTKGSLRNHQRIHTGEKPYKCSECDKSFTIRGNLRFHQRIHTGEKPYKCSECDKSFTLKGNLKIHHRIHTGEKPYKCSECDKTFTQKGHLSNHQVIHSGWKPC", "length": 476, "header": "tr|A0A9J7KBK4-1|A0A9J7KBK4_CRIGR Isoform 1 of Zinc finger protein 501 OS=Cricetulus griseus OX=10029 GN=LOC100753996 PE=3 SV=1 CANONICAL=A0A9J7KBK4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KBK4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBK4/entry", "sequence": { "sequence": "MNACAVNASQGLLSFRDVSVDLSQEEWECLDCAQRALYMDVMLENYSNLLFVENHRICDKCEKLLHPGTKHFIHDHEYVQEKTCKCDELGKVIHKSCQCTPYDTNDTTKNDKYRFANHIDTSVSTLNLNSHKNRNAGEEPCKYKDCAMCLNLCSIISQNEKHHKVMEEHKTTEYDKIIDSKTEITLKQMDPGEKPVQRRKCGKCLKTHSSFIRHQRTHTVEKLYKCTKCSKVFLHFLQLKVHYKIHAGEKLCLCTECGKWFHHTSNFEGNYRIHTGEKPYKCSECDKSFISAPSLRIYHRIHTGEKPLKCNECDKPFPTSSDYKNHQQIHTGDKPYKCSECDKYFTTKGSLRIHQRIHTGEKPYRCSECDKSFTTKGSLRNHQRIHTGEKPYKCSECDKSFTIRGNLRFHQRIHTGEKPYKCSECDKSFTLKGNLKIHHRIHTGEKPYKCSECDKTFTQKGHLSNHQVIHSGWKPC", "length": 476, "header": "tr|A0A9J7KBK4-1|A0A9J7KBK4_CRIGR Isoform 1 of Zinc finger protein 501 OS=Cricetulus griseus OX=10029 GN=LOC100753996 PE=3 SV=1 CANONICAL=A0A9J7KBK4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035303671", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303671" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KBN6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBN6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100763878", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBN6", "locus": {} } ], "crossref": [ { "id": "A0A9J7KBN6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KBN6", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd04104", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04104", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100763878", "url": "https://www.ncbi.nlm.nih.gov/gene/100763878", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007743", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007743", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030385", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030385", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051515", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051515", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763878", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763878", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KBN6", "url": "https://www.orthodb.org/?gene=A0A9J7KBN6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR32341", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32341", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32341:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32341:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05049", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05049", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035303671", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303671", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KBN6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBN6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KBN6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBN6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDQFISAFLKDSSEKNLQKLSVEFLPHYSSLISKAGGMLSPETLNCIQKALQEGKLTDMVSQIQKALAAAEDASLKIAVIGESGAGKSSFINALRGLSHEAEESAGVGVVETTMHRTPYQHPKYPQVTFWDLPGTGTPNFLPDTYLEKVGFADYDFFIIISSSRFSLNDALLAQKIKDVGKKFYFVRTKVDSDLYNEEKTKPTTFKKKRVLQKIRDYCLANLSDVGVSEPRIFLISNFDLADFDFPKLEETLLMELPGHKRHTFALLLPNISDASIEIKRRFLKEKIWLEALKSAAVSFIPLMPFVSGFDLPQQEQCLKDYRNYFGLDDESIKEIAEKLDTSVEDMRGRLKCLDFWSLVKDDSMPAKVMKGTESFYAVMGGPESSVIQGFKVYILCLRFLDTVADDAKHLLKMI", "length": 414, "header": "tr|A0A9J7KBN6-1|A0A9J7KBN6_CRIGR Isoform 1 of T-cell-specific guanine nucleotide triphosphate-binding protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100763878 PE=3 SV=1 CANONICAL=A0A9J7KBN6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KBN6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBN6/entry", "sequence": { "sequence": "MDQFISAFLKDSSEKNLQKLSVEFLPHYSSLISKAGGMLSPETLNCIQKALQEGKLTDMVSQIQKALAAAEDASLKIAVIGESGAGKSSFINALRGLSHEAEESAGVGVVETTMHRTPYQHPKYPQVTFWDLPGTGTPNFLPDTYLEKVGFADYDFFIIISSSRFSLNDALLAQKIKDVGKKFYFVRTKVDSDLYNEEKTKPTTFKKKRVLQKIRDYCLANLSDVGVSEPRIFLISNFDLADFDFPKLEETLLMELPGHKRHTFALLLPNISDASIEIKRRFLKEKIWLEALKSAAVSFIPLMPFVSGFDLPQQEQCLKDYRNYFGLDDESIKEIAEKLDTSVEDMRGRLKCLDFWSLVKDDSMPAKVMKGTESFYAVMGGPESSVIQGFKVYILCLRFLDTVADDAKHLLKMI", "length": 414, "header": "tr|A0A9J7KBN6-1|A0A9J7KBN6_CRIGR Isoform 1 of T-cell-specific guanine nucleotide triphosphate-binding protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100763878 PE=3 SV=1 CANONICAL=A0A9J7KBN6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KBN6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBN6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 221, "end_pos": 223, "annotation": "n_glycosylation_sequon" }, { "start_pos": 270, "end_pos": 272, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7KBN6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBN6" }, { "id": "PS51716", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51716" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "IRG-type G", "eco_id": "ECO_0000259", "start_pos": 73, "end_pos": 255, "start_aa": "Ala", "end_aa": "Glu", "glycosite_overlap": 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} ] }, { "name": "LOC118239369", "type": "synonym", "evidence": [ { "id": "XP_035305553", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305553" } ] } ], "protein_names": [ { "name": "Proline-rich protein 2-like", "type": "synonym", "evidence": [ { "id": "A0A9J7KBQ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBQ6/entry#names_and_taxonomy" } ] }, { "name": "proline-rich protein 2-like", "type": "synonym", "evidence": [ { "id": "XP_035305553", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305553" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048603.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035305553", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305553" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KBQ6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBQ6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC118239369", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBQ6", "locus": {} } ], "crossref": [ { "id": "A0A9J7KBQ6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KBQ6", "database": "AlphaFoldDB", "categories": [] }, { "id": "118239369", "url": "https://www.ncbi.nlm.nih.gov/gene/118239369", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:118239369", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118239369", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_035305553", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305553", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KBQ6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBQ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KBQ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBQ6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSPGHRFPLRKQKCKRRNHLLSDSSAYDLLPTKPLEAAKELRTRKKEFLENQGAWERRQQVKPGPEGPLTPRQLPPKPGSRGTGSHSAASPRERPRPAPRPDPGFEHPIVGRLHPAAAAQPSPRPGGSPQPRACSARSPMLTRSPARPLAPPPAARRRRRVPSHPGSRPRPAAPLTRAGAGLASGRPRRARGSRAGRAGKEGTRPAPLGASASRRGRTEQSREHNSPRLARPLARTPARTLAHPPQRAPASQPARPLARSLARPPFLLSLRARARSGAPSARARARRAVLPPFRPRGPAPRPSRGRGRPAPRARPPARARPSGRAGQWQRSPVT", "length": 334, "header": "tr|A0A9J7KBQ6-1|A0A9J7KBQ6_CRIGR Isoform 1 of Proline-rich protein 2-like OS=Cricetulus griseus OX=10029 GN=LOC118239369 PE=4 SV=1 CANONICAL=A0A9J7KBQ6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KBQ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBQ6/entry", "sequence": { "sequence": "MSPGHRFPLRKQKCKRRNHLLSDSSAYDLLPTKPLEAAKELRTRKKEFLENQGAWERRQQVKPGPEGPLTPRQLPPKPGSRGTGSHSAASPRERPRPAPRPDPGFEHPIVGRLHPAAAAQPSPRPGGSPQPRACSARSPMLTRSPARPLAPPPAARRRRRVPSHPGSRPRPAAPLTRAGAGLASGRPRRARGSRAGRAGKEGTRPAPLGASASRRGRTEQSREHNSPRLARPLARTPARTLAHPPQRAPASQPARPLARSLARPPFLLSLRARARSGAPSARARARRAVLPPFRPRGPAPRPSRGRGRPAPRARPPARARPSGRAGQWQRSPVT", "length": 334, "header": "tr|A0A9J7KBQ6-1|A0A9J7KBQ6_CRIGR Isoform 1 of Proline-rich protein 2-like OS=Cricetulus griseus OX=10029 GN=LOC118239369 PE=4 SV=1 CANONICAL=A0A9J7KBQ6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 35% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035304012", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304012" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KBT0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBT0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cdrt4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBT0", "locus": {} } ], "crossref": [ { "id": "A0A9J7KBT0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KBT0", "database": "AlphaFoldDB", "categories": [] }, { "id": "100762581", "url": "https://www.ncbi.nlm.nih.gov/gene/100762581", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029185", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029185", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762581", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762581", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KBT0", "url": "https://www.orthodb.org/?gene=A0A9J7KBT0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR37885", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37885", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR37885:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37885:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15213", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15213", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035304012", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304012", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KBT0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBT0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KBT0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBT0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDRQPLARNHDDYRKATDVELTENIGLPLKLLENHEPWPAYVTYTSPAVKRLIDKSRVRELECMHAAEENRKPKRLSKPNYMQLKRKKSSKSSEIVKDAPSDARLSTRELYSATNIAPIILEPTQSQLEVREGPTSNYNKIIFSRRPVMWKLPYGLLQSSQEMHAKVPAATP", "length": 172, "header": "tr|A0A9J7KBT0-1|A0A9J7KBT0_CRIGR Isoform 1 of CMT1A duplicated region transcript 4 protein OS=Cricetulus griseus OX=10029 GN=Cdrt4 PE=4 SV=1 CANONICAL=A0A9J7KBT0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KBT0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBT0/entry", "sequence": { "sequence": "MDRQPLARNHDDYRKATDVELTENIGLPLKLLENHEPWPAYVTYTSPAVKRLIDKSRVRELECMHAAEENRKPKRLSKPNYMQLKRKKSSKSSEIVKDAPSDARLSTRELYSATNIAPIILEPTQSQLEVREGPTSNYNKIIFSRRPVMWKLPYGLLQSSQEMHAKVPAATP", "length": 172, "header": "tr|A0A9J7KBT0-1|A0A9J7KBT0_CRIGR Isoform 1 of CMT1A duplicated region transcript 4 protein OS=Cricetulus griseus OX=10029 GN=Cdrt4 PE=4 SV=1 CANONICAL=A0A9J7KBT0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7KBT3-1", "uniprot_ac": "A0A9J7KBT3", "uniprot_id": "A0A9J7KBT3_CRIGR", "mass": { "chemical_mass": 22564.0, "monoisotopic_mass": 22564.0 }, "refseq": { "ac": "XP_035305637", "name": "odorant-binding protein-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305637" }, "gene_names": [ { "name": "LOC113837656", "type": "recommended", "evidence": [ { "id": "A0A9J7KBT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBT3" } ] }, { "name": "LOC113837656", "type": "synonym", "evidence": [ { "id": "XP_035305637", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305637" } ] } ], "protein_names": [ { "name": "Odorant-binding protein-like", "type": "synonym", "evidence": [ { "id": "A0A9J7KBT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBT3/entry#names_and_taxonomy" } ] }, { "name": "odorant-binding protein-like", "type": "synonym", "evidence": [ { "id": "XP_035305637", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305637" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 19% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035305637", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305637" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KBT3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBT3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113837656", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBT3", "locus": {} } ], "crossref": [ { "id": "A0A9J7KBT3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KBT3", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd19427", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19427", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "113837656", "url": "https://www.ncbi.nlm.nih.gov/gene/113837656", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002345", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002345", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002448", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002448", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012674", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012674", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113837656", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113837656", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KBT3", "url": "https://www.orthodb.org/?gene=A0A9J7KBT3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11430", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11430", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11430:SF65", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11430:SF65", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00061", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00061", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035305637", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305637", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KBT3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBT3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KBT3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBT3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVKFLLLALALGLAHADDYSELQGKWETIAIAANNVDKIEKEGPMRLYVREIDCNDDCSEMGVTFYVNANNQCSKTKVIGYRQADGTYRTQFEGDNTFKPVHATPENIVFVTDNVDRDGRKTKLIYVVGKGQPLTSEQHEKFVEFAHEKNIPEENIHNVLATGVYQLSEFPGRLFQPEARGLRPEASGESARGPTWWEPL", "length": 200, "header": "tr|A0A9J7KBT3-1|A0A9J7KBT3_CRIGR Isoform 1 of Odorant-binding protein-like OS=Cricetulus griseus OX=10029 GN=LOC113837656 PE=3 SV=1 CANONICAL=A0A9J7KBT3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KBT3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBT3/entry", "sequence": { "sequence": "MVKFLLLALALGLAHADDYSELQGKWETIAIAANNVDKIEKEGPMRLYVREIDCNDDCSEMGVTFYVNANNQCSKTKVIGYRQADGTYRTQFEGDNTFKPVHATPENIVFVTDNVDRDGRKTKLIYVVGKGQPLTSEQHEKFVEFAHEKNIPEENIHNVLATGVYQLSEFPGRLFQPEARGLRPEASGESARGPTWWEPL", "length": 200, "header": "tr|A0A9J7KBT3-1|A0A9J7KBT3_CRIGR Isoform 1 of Odorant-binding protein-like OS=Cricetulus griseus OX=10029 GN=LOC113837656 PE=3 SV=1 CANONICAL=A0A9J7KBT3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035303902", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303902" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KBV7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBV7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Srcin1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBV7", "locus": {} } ], "crossref": [ { "id": "A0A9J7KBV7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KBV7", "database": "AlphaFoldDB", "categories": [] }, { "id": "100764045", "url": "https://www.ncbi.nlm.nih.gov/gene/100764045", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR022782", 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Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KBV7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBV7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"https://www.uniprot.org/uniprotkb/A0A9J7KBV7" } ], "pmid": "" }, { "name": "actin cytoskeleton", "id": "GO:0015629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015629", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KBV7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBV7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of dendritic spine morphogenesis", "id": "GO:0061001", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061001", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KBV7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBV7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1114, "end_pos": 1116, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1141, "end_pos": 1143, "annotation": "n_glycosylation_sequon" }, { "start_pos": 214, "end_pos": 216, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], 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"type": "recommended", "evidence": [ { "id": "A0A9J7KBX1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBX1" } ] }, { "name": "Fer1l5", "type": "synonym", "evidence": [ { "id": "XP_035308371", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308371" } ] } ], "protein_names": [ { "name": "Fer-1-like protein 5 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7KBX1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBX1/entry#names_and_taxonomy" } ] }, { "name": "fer-1-like protein 5 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035308371", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308371" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 2% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308371", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308371" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KBX1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBX1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fer1l5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBX1", "locus": {} } ], "crossref": [ { "id": "cd04011", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04011", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd04017", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04017", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd04037", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04037", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd08374", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08374", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100773388", "url": "https://www.ncbi.nlm.nih.gov/gene/100773388", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006614", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006614", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012560", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012560", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012561", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012561", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012968", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012968", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032362", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032362", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037720", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037720", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037721", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037721", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037723", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037723", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037724", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037724", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055072", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055072", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100773388", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773388", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KBX1", "url": "https://www.orthodb.org/?gene=A0A9J7KBX1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12546", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12546", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12546:SF34", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12546:SF34", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00168", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00168", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08150", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08150", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08165", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08165", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16165", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16165", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22901", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22901", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035308371", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308371", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KBX1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBX1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KBX1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBX1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MISPCPSQTLIWYLWNQPLEIDSFLQVTLQDEGSRKKERFIGTATVLLKKLVQKPDEVLDMKNLVLLNHSMKPTDCTVNLQLAQMHDQHTEMMGHEELLYSTANKVTQQKLMVPGYTMHRTLTSKPQQFQVRIKVFEARQLLGNNIKPVVKINIAGHQHITRIKIGNNPFFNEIFFQNFHEVPAKFFEENILIQVVDSAASRSKAEIGRFQTDIGFIYHAPGHTLLRKWLGLCQKNKTNSGVRGYLKVTICALGVGDMALVDQKLPYETGTQVKIFKSAAAPVSLAYLQFFIYCAEDLHFRKHQSASPALEVELIGNKLRTHPQSQSDSPIWNQILTFQIQLPCLSSYIKFRVVDCSKRDCWEVIGSASLCLNQISSTGEEIQGMYSGFLPCFGPSFLTLRGGKKAPFRIPEDGTCIFDAVKDGLTYQGRIFVEIITRMKSQQDSVIKDLSREVTQIERQQYRHKYGLCVVFLSCTMMPKFKDLIQFEVSMGHYGNKMDPNYKPLVSTTQYSPVIYDGCLYHYVPWYDMKPVVAVTSKWEDVNFRINCLNLLHVTRDHLKANLDTLKSIQNPKDPALFQQWEKLLKDLIQDCLHPLPCMTDQPKANNLDKKKWQLRNRLLKQLAQNAKDAKPKNMVVTAEDWLHRLNSVIPEPQDSLPDVMIWLMSKQQRVAYARVPAHTVLFSPEGPLSSGKFCGKIQNLFLQYPEGEGQDTLPAYLRVCMWLGNVIHSKDLKLLEHGKMVVYAETYENQAKVKGQWGQQGLYRCPNFSDVLGRKAVPKTDFKTPLGWHWKGDWIVEPQRRLLLDTDINKSQVLEEVYENQTRNAKGIWVPAAVPNTDVNGQPVEAMENVKCPQGWHFKKSWIVDHNYAVDSEGWEYGVGIPPSGLPQIWNSVEKTYHSSRRRRWVRVRFRDHQELSQEQETLSFLQTQDISEEGKEGWEYGTFDSKFHLDPKPTSRFRRRCWHRRLAPNKERGVAPIFFLEGSLAQAAELENQSKPEPHRTRSWWDSWRRMQEDPWIPNMPFIYCVFQKPHYYQLFCYIYRARNLMYNQILTFQEPFIRVVFLNHSLCTQTLHSSAAPTWAQTLIFQHLLLFENPKDTKENPPFVVLELWQHDSKGKKVLWGRSMWPPVVWLNLQSWTLTPLRWHPIMKELGEEEGEILASCELILEVEKDVHLPMLSVPFKDGIYSLPKNIQPTVKMMAIEILAWGLRNMKKVRYPQLRVECGEQSLRTDPISNYQQNPNFPIKNFLLTVLMPMEETYALPLMVKVVDNQVYGQEIVVGHANIDFLQPYFCDPWALNYTPVNIPPLPEKKPDTFLDFLYKKFWFDSRKDEDDYDYEYDVDWWSKFFWATDNDDKSLKYKYKNYHTLKVYDCELEAVPDFQGLQDFCQTFKLYQEKPKVDSPVVGEFKGLFRIYPFPEDPEAPNPPRQFSSWPETDNFPQTCMVRVYLIRAINLQPQDYNGLCDPYVILKLGQTKFGSRDSYYPNTLNPIFGTMYELKCNIPLEKDLEIQLYDFDLVTSDDEIGMTVIDLENRLLSGFGARCGLSNCYCKSGPFRWRDQLSPSYLLDRYAKQKGLPPPVYDLEKDSVFYNGKMVQLKSFESTPPTLKDLGPKKERLALYILNSQGLVPEHVETRTLFSNSQPGIDQGKIQMWVDVFPFVLGPPGRPVNISPRKPKRYELRCIIWSTTQVDLVQQTFSRDKTSDIYVKGWLFGQEKDMQKTDVHYHSLTGDAVFNWRFIFTIDYLVTERVCVQSQKDYIWSLDPVSMKFPARLIIQIWDNDLFSPDDFLGVLELDLSDMPLPAVSSKQCSLKMMEPDPKWPHTQQKRISLFKKTNVTGWWPCQVLDGDKWRLSGKVKMTLEILTEKEALIRPAGRGQSEPNEFPKLHPPVRHDSPFMWIRSPIKNFCYVFCKRYRYKIICLLMTLLLAMILFNFIYSAPNYLAMAWIKPELRLNPPIKIVNLISSANTSNINSSVYREEGSKLQPLKDNASTLHQGHRNHVKDVVPGIPAPQG", "length": 2014, "header": "tr|A0A9J7KBX1-1|A0A9J7KBX1_CRIGR Isoform 1 of Fer-1-like protein 5 isoform X2 OS=Cricetulus griseus OX=10029 GN=Fer1l5 PE=3 SV=1 CANONICAL=A0A9J7KBX1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KBX1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBX1/entry", "sequence": { "sequence": "MISPCPSQTLIWYLWNQPLEIDSFLQVTLQDEGSRKKERFIGTATVLLKKLVQKPDEVLDMKNLVLLNHSMKPTDCTVNLQLAQMHDQHTEMMGHEELLYSTANKVTQQKLMVPGYTMHRTLTSKPQQFQVRIKVFEARQLLGNNIKPVVKINIAGHQHITRIKIGNNPFFNEIFFQNFHEVPAKFFEENILIQVVDSAASRSKAEIGRFQTDIGFIYHAPGHTLLRKWLGLCQKNKTNSGVRGYLKVTICALGVGDMALVDQKLPYETGTQVKIFKSAAAPVSLAYLQFFIYCAEDLHFRKHQSASPALEVELIGNKLRTHPQSQSDSPIWNQILTFQIQLPCLSSYIKFRVVDCSKRDCWEVIGSASLCLNQISSTGEEIQGMYSGFLPCFGPSFLTLRGGKKAPFRIPEDGTCIFDAVKDGLTYQGRIFVEIITRMKSQQDSVIKDLSREVTQIERQQYRHKYGLCVVFLSCTMMPKFKDLIQFEVSMGHYGNKMDPNYKPLVSTTQYSPVIYDGCLYHYVPWYDMKPVVAVTSKWEDVNFRINCLNLLHVTRDHLKANLDTLKSIQNPKDPALFQQWEKLLKDLIQDCLHPLPCMTDQPKANNLDKKKWQLRNRLLKQLAQNAKDAKPKNMVVTAEDWLHRLNSVIPEPQDSLPDVMIWLMSKQQRVAYARVPAHTVLFSPEGPLSSGKFCGKIQNLFLQYPEGEGQDTLPAYLRVCMWLGNVIHSKDLKLLEHGKMVVYAETYENQAKVKGQWGQQGLYRCPNFSDVLGRKAVPKTDFKTPLGWHWKGDWIVEPQRRLLLDTDINKSQVLEEVYENQTRNAKGIWVPAAVPNTDVNGQPVEAMENVKCPQGWHFKKSWIVDHNYAVDSEGWEYGVGIPPSGLPQIWNSVEKTYHSSRRRRWVRVRFRDHQELSQEQETLSFLQTQDISEEGKEGWEYGTFDSKFHLDPKPTSRFRRRCWHRRLAPNKERGVAPIFFLEGSLAQAAELENQSKPEPHRTRSWWDSWRRMQEDPWIPNMPFIYCVFQKPHYYQLFCYIYRARNLMYNQILTFQEPFIRVVFLNHSLCTQTLHSSAAPTWAQTLIFQHLLLFENPKDTKENPPFVVLELWQHDSKGKKVLWGRSMWPPVVWLNLQSWTLTPLRWHPIMKELGEEEGEILASCELILEVEKDVHLPMLSVPFKDGIYSLPKNIQPTVKMMAIEILAWGLRNMKKVRYPQLRVECGEQSLRTDPISNYQQNPNFPIKNFLLTVLMPMEETYALPLMVKVVDNQVYGQEIVVGHANIDFLQPYFCDPWALNYTPVNIPPLPEKKPDTFLDFLYKKFWFDSRKDEDDYDYEYDVDWWSKFFWATDNDDKSLKYKYKNYHTLKVYDCELEAVPDFQGLQDFCQTFKLYQEKPKVDSPVVGEFKGLFRIYPFPEDPEAPNPPRQFSSWPETDNFPQTCMVRVYLIRAINLQPQDYNGLCDPYVILKLGQTKFGSRDSYYPNTLNPIFGTMYELKCNIPLEKDLEIQLYDFDLVTSDDEIGMTVIDLENRLLSGFGARCGLSNCYCKSGPFRWRDQLSPSYLLDRYAKQKGLPPPVYDLEKDSVFYNGKMVQLKSFESTPPTLKDLGPKKERLALYILNSQGLVPEHVETRTLFSNSQPGIDQGKIQMWVDVFPFVLGPPGRPVNISPRKPKRYELRCIIWSTTQVDLVQQTFSRDKTSDIYVKGWLFGQEKDMQKTDVHYHSLTGDAVFNWRFIFTIDYLVTERVCVQSQKDYIWSLDPVSMKFPARLIIQIWDNDLFSPDDFLGVLELDLSDMPLPAVSSKQCSLKMMEPDPKWPHTQQKRISLFKKTNVTGWWPCQVLDGDKWRLSGKVKMTLEILTEKEALIRPAGRGQSEPNEFPKLHPPVRHDSPFMWIRSPIKNFCYVFCKRYRYKIICLLMTLLLAMILFNFIYSAPNYLAMAWIKPELRLNPPIKIVNLISSANTSNINSSVYREEGSKLQPLKDNASTLHQGHRNHVKDVVPGIPAPQG", "length": 2014, "header": "tr|A0A9J7KBX1-1|A0A9J7KBX1_CRIGR Isoform 1 of Fer-1-like protein 5 isoform X2 OS=Cricetulus griseus OX=10029 GN=Fer1l5 PE=3 SV=1 CANONICAL=A0A9J7KBX1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035306028", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306028" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KC60", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KC60" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100766498", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KC60", "locus": {} } ], "crossref": [ { "id": "A0A9J7KC60", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KC60", "database": "AlphaFoldDB", "categories": [] }, { "id": "100766498", "url": "https://www.ncbi.nlm.nih.gov/gene/100766498", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004240", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004240", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100766498", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766498", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KC60", "url": "https://www.orthodb.org/?gene=A0A9J7KC60", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10766", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10766", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10766:SF176", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10766:SF176", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02990", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02990", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035306028", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306028", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KC60", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KC60", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KC60-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KC60-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYSEFSFNKEETCRKVCVKSYAPEDEDQMRRLAFLKGGIKQNYYHRWVIDSTRVIWCYDKEDKSPYCTLGFPIGCFKDPNSQLKIPCLNNSEFKNNSLYLFNHVDITITYHMESDTTGNVAKLISSRVEPKSYKHTDENHLTCNEPPLEIPEDEDYFSVIYTYSVKFEESKTVKWSSEWDHDIESATEVNILWIRLVNSFFVVLTLCGLVIIVILKSICRDIIKCNRIKPPMYNWRRFGWRMIHGSIFRLPKYGMLLSVFLGQGTQVFIMAFFSLFLAGLGFLTPADRRALVNYGIVLWFLLEIPAGYVSAKMYKTFRGGKWKTHFLLTTLLFPGIVFTDIFIMNLSLWMEGSSAAISFDSLATIFTLCFGVSTPLTFLGVFFGKRDKFQFPVRAYQTRRVRTQRRFFTKPTITIILGSLLPFGCMFLQLSYILNRIWSPHMYYLFAFLFLIFLILMISCSEVTVLLCYFRLSVEDYGWWWRAFLTSSFTSTYILMYAIHYFFTKLHVIDIGSIFVYFGYTLILVLVFFLFTGTIGFFSCFSFITAVYGVMKVR", "length": 554, "header": "tr|A0A9J7KC60-1|A0A9J7KC60_CRIGR Isoform 1 of Transmembrane 9 superfamily member OS=Cricetulus griseus OX=10029 GN=LOC100766498 PE=3 SV=1 CANONICAL=A0A9J7KC60-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KC60-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KC60/entry", "sequence": { "sequence": "MYSEFSFNKEETCRKVCVKSYAPEDEDQMRRLAFLKGGIKQNYYHRWVIDSTRVIWCYDKEDKSPYCTLGFPIGCFKDPNSQLKIPCLNNSEFKNNSLYLFNHVDITITYHMESDTTGNVAKLISSRVEPKSYKHTDENHLTCNEPPLEIPEDEDYFSVIYTYSVKFEESKTVKWSSEWDHDIESATEVNILWIRLVNSFFVVLTLCGLVIIVILKSICRDIIKCNRIKPPMYNWRRFGWRMIHGSIFRLPKYGMLLSVFLGQGTQVFIMAFFSLFLAGLGFLTPADRRALVNYGIVLWFLLEIPAGYVSAKMYKTFRGGKWKTHFLLTTLLFPGIVFTDIFIMNLSLWMEGSSAAISFDSLATIFTLCFGVSTPLTFLGVFFGKRDKFQFPVRAYQTRRVRTQRRFFTKPTITIILGSLLPFGCMFLQLSYILNRIWSPHMYYLFAFLFLIFLILMISCSEVTVLLCYFRLSVEDYGWWWRAFLTSSFTSTYILMYAIHYFFTKLHVIDIGSIFVYFGYTLILVLVFFLFTGTIGFFSCFSFITAVYGVMKVR", "length": 554, "header": "tr|A0A9J7KC60-1|A0A9J7KC60_CRIGR Isoform 1 of Transmembrane 9 superfamily member OS=Cricetulus griseus OX=10029 GN=LOC100766498 PE=3 SV=1 CANONICAL=A0A9J7KC60-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: incomplete on the amino end.", "evidence": [ { "database": "RefSeq", "id": "XP_035308888", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308888" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KCB9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCB9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100771210", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCB9", "locus": {} } ], "crossref": [ { "id": "A0A9J7KCB9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KCB9", "database": "AlphaFoldDB", "categories": [] }, { "id": "100771210", "url": "https://www.ncbi.nlm.nih.gov/gene/100771210", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006797", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006797", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037365", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037365", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100771210", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771210", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KCB9", "url": "https://www.orthodb.org/?gene=A0A9J7KCB9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11158", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11158", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04707", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04707", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035308888", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308888", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KCB9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCB9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KCB9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCB9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "IGTARTKTYVQEHSVVDLVKKTMELKPTNISFTNMVSVEERITYKPHPQDPEKTVLTQEAIITVKGVSLSSYLEGLMASTISSNPNKGWEAMEWVIHKLNAEIEDLAASARGSLRMPMAAAAALVEK", "length": 127, "header": "tr|A0A9J7KCB9-1|A0A9J7KCB9_CRIGR Isoform 1 of PRELI domain containing protein 3B-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100771210 PE=4 SV=1 CANONICAL=A0A9J7KCB9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KCB9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCB9/entry", "sequence": { "sequence": "IGTARTKTYVQEHSVVDLVKKTMELKPTNISFTNMVSVEERITYKPHPQDPEKTVLTQEAIITVKGVSLSSYLEGLMASTISSNPNKGWEAMEWVIHKLNAEIEDLAASARGSLRMPMAAAAALVEK", "length": 127, "header": "tr|A0A9J7KCB9-1|A0A9J7KCB9_CRIGR Isoform 1 of PRELI domain containing protein 3B-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100771210 PE=4 SV=1 CANONICAL=A0A9J7KCB9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KCB9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCB9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100771210", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771210", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrial intermembrane space", "id": "GO:0005758", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005758", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KCB9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCB9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 29, "end_pos": 31, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], 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protein C4orf50 homolog", "type": "synonym", "evidence": [ { "id": "XP_035308919", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308919" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 36% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308919", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308919" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KCC9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCC9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH4orf50", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCC9", "locus": {} } ], "crossref": [ { "id": "113830900", "url": "https://www.ncbi.nlm.nih.gov/gene/113830900", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR032771", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032771", "database": "InterPro", "categories": [ "Protein 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"https://www.uniprot.org/uniprotkb/A0A9J7KCC9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KCC9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCC9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPTAQEQTEKSFSYVIRAPSSDGFDVMNVDVKIDTCWVFRDVEESRQEQGYPSEVASSPDLDTGLLREQLESSERKLLAAVDKHVTSESGLRSRVQELELSEKKLRLKVEQLSACVAQERRASHYAQEQLQALQGDLVIWVRAESATRRQQRLQERLRHKDEALAQQAAALERCGRAQRLQLGLVRDQERVLRAQVQRLERDVRRLGRAAGFLLAQLHAADPLPSANSPGPQPPAGPLRSPEATELSALRTRAERAEREWAEAVRSLQEHSVTERQLREQLEELRCCVYGLTLSEIGLHSQVEELAHQNMHLRAQLGHGTPRCWIPAVSKAATVTLMDFKPLQGALFQPHLDGQILQLLCSCPPGPGMDEPHCSLDLVGVSENLQAAGAQESLLLLPTSVLPLWGLAGDTQLLLPFLLQEHFLQELQTQEELDSKPSPPSGGTVHPDWPCNLVRSHLTSHSQQSPLISNGPFPTKGPKEPRDAWKERSGPPVASAEKWEVMGTVRMINSEFDHKFPLDQESSEKLILVTEMQAPEDMQEGSRDSETQAIAHCPWLQPECLILTVHGTTSRSQEGPDSLKKKGSVEVCSWELLGKLSPEKEEDATSSRAHETRKPEPNASQLPSGKGKEVWRRAQGKQGHQLCFGDIQLLQKERSGDEEQEERMQLRVAPSTTSLGVCEKPDFKTHVGQEQCLPTSDQHLLKFPNWAPAGGSREGPCSSQALITGQDRCTLQVDTLEREMEAHFQQPNNLKLVCGDPQQMSALTRESQSVTHTWLDTEGSVCHQQASASQDLNAKSSRNGEGVRLEEDVALCTREVLPGATLDGDKANWSPGGSLLPPIRCTQKKMGSRFHQLLATPKKERSQDFLDNARLQGAQEGCDHEGCQSEKEWAREAAKARRLEQANHTLQGELVYLRHELDHCLQAVSDLEDCNGKSYCKISQLEEENEKLKGDLGRLHKAMSESVRKAGSRMKHLTLENRELRALISELGVSYKGLIKDTMLGIEDMVWTLQEENKHLVGRVQGLEQEVLQMSRDSGEEKWCSQGNSKTAEDKGHTEDKEVQVTLFSKQLITRARRTPWDEKSGVTWGQAEPSLDLEGRCQAVASSASSVCAVTVGPQEAHSNGVRGDGAQLSKEQETPWCSMQQGQSQRSLNHSLQLQTSKADASEEDPKLCIQRLRHQVRTLQCQLRDQGWTLRDLQAARDEAVGLQDKLKNKLEELREQQHEERLATSPLKAKLASLVHKCQERNCLIEQLVQELPRQEPKNHLLSELAQKMLDDVALAEYTDTFLTPGAPETVCHLDVGSKGTTARGRASGLLPLCNSWRRLALHQVLRQSAGSNSQANKSL", 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"length": 1344, "header": "tr|A0A9J7KCC9-1|A0A9J7KCC9_CRIGR Isoform 1 of Uncharacterized protein C4orf50 homolog OS=Cricetulus griseus OX=10029 GN=CUNH4orf50 PE=4 SV=1 CANONICAL=A0A9J7KCC9-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1112, "start_aa": "Thr", "end_pos": 1112, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1112", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048601.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035304646", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304646" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KCH0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCH0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ccser1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCH0", "locus": {} } ], "crossref": [ { "id": "A0A9J7KCH0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KCH0", "database": "AlphaFoldDB", "categories": [] }, { "id": "100775049", "url": "https://www.ncbi.nlm.nih.gov/gene/100775049", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029627", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029627", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100775049", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100775049", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KCH0", "url": "https://www.orthodb.org/?gene=A0A9J7KCH0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22461", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22461", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22461:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22461:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_035304646", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304646", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H6M7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6M7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H6M7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6M7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H7G4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7G4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H7G4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7G4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KCH0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCH0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KCH0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCH0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGDSGSRRCTLVSRLPIFRKSISRRHDSLPSSPSSSNTAGVHSSSPSSTNSSSGSMGKRRSIFRAPSISFHHKKGSEPKPEPTDQNLSISNGAQPSHSNMQKLSLEEQVKTRGRHSVGFSSSRSKKITRSLTEDFEREKEPSTNKNVFINCLSSGRSEGDDSGFTEEQTRRSLKQSTKKLLPKSFSSHSKFSKSVPQSQSKSLVQQPEFSLAISQYQEREPALGRPSPSCSADGTEHAGSSLQSPMLSTDLTTAQTPSEFLALTEDSLSEADAFPKSGSMASHCDNFGHNDATSQPTPGLTAVTKTAMEFVGTVPCMMMSPGRYRLDGRYGNELHSLPETSAANQGAALMQSTGPLVRNVSDPETHLPAGHQTEEKPASEPMPRTSSPRTLGSYDQHKALAERIKGVHPVSDSRVIPSSGDHHVFNKTSYGYDASAAKVLASSLSPYHEGRYIERRLRSSSEGTAGSGRMVLKPKDGHAEASSLRKHRAGSSSSKMNSLDVLNHLGSCELDEDDLMLDLEFLEEQNLQPPVCREDSCHSLMSCAAVLLSPVDPTREMKKLEEPKCPEPSKQSLSLKITKDIDQEARCSHVSRMPSSPSADWPLLGVEENGGIDSLPFRLMLQECTAVKTLLLKMKRVLQEVGDVSPSSSTTSLPISPLTEEPLPFKDITKDECSMLKLQLKDRDELISQLQAELEKVQHLQKAFASRVDKSTQTELLGCDGLSLKRLEAVQGGRESTYRNRTMSQSLSTRDRKAIHTPTEDRFRYSTVDQTSPYKNICQLPGLCLSNFLKDKELGGVMKHSRGTYEATSEVTQNSRTTVGPSFLKPAMKTEGLSMSLEKPKEPASLSRQHSTFTGRFGQPPRGPISLHTYSRKNVFLHHNLHTTEFQTLGQQDG", "length": 894, "header": "tr|A0A9J7KCH0-1|A0A9J7KCH0_CRIGR Isoform 1 of Serine-rich coiled-coil domain-containing protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ccser1 PE=3 SV=1 CANONICAL=A0A9J7KCH0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H6M7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6M7/entry", "sequence": { "sequence": "MGDSGSRRCTLVSRLPIFRKSISRRHDSLPSSPSSSNTAGVHSSSPSSTNSSSGSMGKRRSIFRAPSISFHHKKGSEPKPEPTDQNLSISNGAQPSHSNMQKLSLEEQVKTRGRHSVGFSSSRSKKITRSLTEDFEREKEPSTNKNVFINCLSSGRSEGDDSGFTEEQTRRSLKQSTKKLLPKSFSSHSKFSKSVPQSQSKSLVQQPEFSLAISQYQEREPALGRPSPSCSADGTEHAGSSLQSPMLSTDLTTAQTPSEFLALTEDSLSEADAFPKSGSMASHCDNFGHNDATSQPTPGLTAVTKTAMEFVGTVPCMMMSPGRYRLDGRYGNELHSLPETSAANQGAALMQSTGPLVRNVSDPETHLPAGHQTEEKPASEPMPRTSSPRTLGSYDQHKALAERIKGVHPVSDSRVIPSSGDHHVFNKTSYGYDASAAKVLASSLSPYHEGRYIERRLRSSSEGTAGSGRMVLKPKDGHAEASSLRKHRAGSSSSKMNSLDVLNHLGSCELDEDDLMLDLEFLEEQNLQPPVCREDSCHSLMSCAAVLLSPVDPTREMKKLEEPKCPEPSKQSLSLKITKDIDQEARCSHVSRMPSSPSADWPLLGVEENGGIDSLPFRLMLQECTAVKTLLLKMKRVLQEVGDVSPSSSTTSLPISPLTEEPLPFKDITKDECSMLKLQLKDRDELISQLQAELEKVQHLQKAFASRVDKSTQTELLGCDALWNPTCTGGLFKPVYISS", "length": 739, "header": "tr|A0A9J7H6M7-1|A0A9J7H6M7_CRIGR Computationally mapped isoform of Serine-rich coiled-coil domain-containing protein 1 isoform X4 OS=Cricetulus griseus OX=10029 GN=Ccser1 PE=3 SV=1 CANONICAL=A0A9J7KCH0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H7G4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7G4/entry", "sequence": { "sequence": "MGDSGSRRCTLVSRLPIFRKSISRRHDSLPSSPSSSNTAGVHSSSPSSTNSSSGSMGKRRSIFRAPSISFHHKKGSEPKPEPTDQNLSISNGAQPSHSNMQKLSLEEQVKTRGRHSVGFSSSRSKKITRSLTEDFEREKEPSTNKNVFINCLSSGRSEGDDSGFTEEQTRRSLKQSTKKLLPKSFSSHSKFSKSVPQSQSKSLVQQPEFSLAISQYQEREPALGRPSPSCSADGTEHAGSSLQSPMLSTDLTTAQTPSEFLALTEDSLSEADAFPKSGSMASHCDNFGHNDATSQPTPGLTAVTKTAMEFVGTVPCMMMSPGRYRLDGRYGNELHSLPETSAANQGAALMQSTGPLVRNVSDPETHLPAGHQTEEKPASEPMPRTSSPRTLGSYDQHKALAERIKGVHPVSDSRVIPSSGDHHVFNKTSYGYDASAAKVLASSLSPYHEGRYIERRLRSSSEGTAGSGRMVLKPKDGHAEASSLRKHRAGSSSSKMNSLDVLNHLGSCELDEDDLMLDLEFLEEQNLQPPVCREDSCHSLMSCAAVLLSPVDPTREMKKLEEPKCPEPSKQSLSLKITKDIDQEARCSHVSRMPSSPSADWPLLGVEENGGIDSLPFRLMLQECTAVKTLLLKMKRVLQESDVSPSSSTTSLPISPLTEEPLPFKDITKDECSMLKLQLKDRDELISQLQAELEKVQHLQKAFASRVDKSTQTELLGCDGLSLKRLEAVQGGRESTYRNRTMSQSLSTRDRKAIHTPTEDRFRYSTVDQTSPYKNICQLPGLCLSNFLKDKELGGVMKHSRGTYEATSEVTQNSRTTVGPSFLKPAMKTEGLSMSLEKPKEPASLSRQHSTFTGRFGQPPRGPISLHTYSRKNVFLHHNLHTTEFQTLGQQDG", "length": 893, "header": "tr|A0A9J7H7G4-1|A0A9J7H7G4_CRIGR Computationally mapped isoform of Serine-rich coiled-coil domain-containing protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Ccser1 PE=3 SV=1 CANONICAL=A0A9J7KCH0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KCH0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCH0/entry", "sequence": { "sequence": "MGDSGSRRCTLVSRLPIFRKSISRRHDSLPSSPSSSNTAGVHSSSPSSTNSSSGSMGKRRSIFRAPSISFHHKKGSEPKPEPTDQNLSISNGAQPSHSNMQKLSLEEQVKTRGRHSVGFSSSRSKKITRSLTEDFEREKEPSTNKNVFINCLSSGRSEGDDSGFTEEQTRRSLKQSTKKLLPKSFSSHSKFSKSVPQSQSKSLVQQPEFSLAISQYQEREPALGRPSPSCSADGTEHAGSSLQSPMLSTDLTTAQTPSEFLALTEDSLSEADAFPKSGSMASHCDNFGHNDATSQPTPGLTAVTKTAMEFVGTVPCMMMSPGRYRLDGRYGNELHSLPETSAANQGAALMQSTGPLVRNVSDPETHLPAGHQTEEKPASEPMPRTSSPRTLGSYDQHKALAERIKGVHPVSDSRVIPSSGDHHVFNKTSYGYDASAAKVLASSLSPYHEGRYIERRLRSSSEGTAGSGRMVLKPKDGHAEASSLRKHRAGSSSSKMNSLDVLNHLGSCELDEDDLMLDLEFLEEQNLQPPVCREDSCHSLMSCAAVLLSPVDPTREMKKLEEPKCPEPSKQSLSLKITKDIDQEARCSHVSRMPSSPSADWPLLGVEENGGIDSLPFRLMLQECTAVKTLLLKMKRVLQEVGDVSPSSSTTSLPISPLTEEPLPFKDITKDECSMLKLQLKDRDELISQLQAELEKVQHLQKAFASRVDKSTQTELLGCDGLSLKRLEAVQGGRESTYRNRTMSQSLSTRDRKAIHTPTEDRFRYSTVDQTSPYKNICQLPGLCLSNFLKDKELGGVMKHSRGTYEATSEVTQNSRTTVGPSFLKPAMKTEGLSMSLEKPKEPASLSRQHSTFTGRFGQPPRGPISLHTYSRKNVFLHHNLHTTEFQTLGQQDG", "length": 894, "header": "tr|A0A9J7KCH0-1|A0A9J7KCH0_CRIGR Isoform 1 of Serine-rich coiled-coil domain-containing protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ccser1 PE=3 SV=1 CANONICAL=A0A9J7KCH0-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 297, "start_aa": "Thr", "end_pos": 297, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr297", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KCH0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCH0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KCH0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCH0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100775049", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100775049", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 359, "end_pos": 361, "annotation": "n_glycosylation_sequon" }, { "start_pos": 426, "end_pos": 428, "annotation": "n_glycosylation_sequon" }, { "start_pos": 50, "end_pos": 52, "annotation": "n_glycosylation_sequon" }, { "start_pos": 740, "end_pos": 742, "annotation": "n_glycosylation_sequon" }, { "start_pos": 86, "end_pos": 88, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 297 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 359, "end_pos": 361 }, { "start_pos": 426, "end_pos": 428 }, { "start_pos": 50, "end_pos": 52 }, { "start_pos": 740, "end_pos": 742 }, { "start_pos": 86, "end_pos": 88 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7KCH8-1", "uniprot_ac": "A0A9J7KCH8", "uniprot_id": "A0A9J7KCH8_CRIGR", "mass": { "chemical_mass": 22918.0, "monoisotopic_mass": 22918.0 }, "refseq": { "ac": "XP_035306374", "name": "LOW QUALITY PROTEIN: AN1-type zinc finger protein 3 isoform X5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306374" }, "gene_names": [ { "name": "Zfand3", "type": "recommended", "evidence": [ { "id": "A0A9J7KCH8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCH8" } ] }, { "name": "Zfand3", "type": "synonym", "evidence": [ { "id": "XP_035306374", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306374" } ] } ], "protein_names": [ { "name": "AN1-type zinc finger protein 3", "type": "recommended", "evidence": [ { "id": "A0A9J7KCH8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCH8/entry#names_and_taxonomy" } ] }, { "name": "LOW QUALITY PROTEIN: AN1-type zinc finger protein 3 isoform X5", "type": "synonym", "evidence": [ { "id": "XP_035306374", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306374" } ] }, { "name": "Testis-expressed protein 27", "type": "synonym", "evidence": [ { "id": "A0A9J7KCH8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCH8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035306374", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306374" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KCH8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCH8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Zfand3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCH8", "locus": {} } ], "crossref": [ { "id": "100755969", "url": "https://www.ncbi.nlm.nih.gov/gene/100755969", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002653", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002653", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035896", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035896", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050652", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050652", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755969", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755969", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KCH8", "url": "https://www.orthodb.org/?gene=A0A9J7KCH8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10634", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10634", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10634:SF67", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10634:SF67", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01428", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01428", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01754", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01754", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035306374", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306374", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KCH8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCH8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KCH8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCH8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGDAGSERSKAPSLPPRCXCGFWGSSKTMNLCSKCFADFQKKQPDDDSAPSTSNSQSDLFSEETTSDNSNTSITTPTLSPSQQSLPTELNVTSPSKEEYSQSENEASPVKRPRLLEGTERPEESSRSKQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGREEAIMKMVKLDRKVGRSCQRIGEGCS", "length": 205, "header": "tr|A0A9J7KCH8-1|A0A9J7KCH8_CRIGR Isoform 1 of AN1-type zinc finger protein 3 OS=Cricetulus griseus OX=10029 GN=Zfand3 PE=4 SV=1 CANONICAL=A0A9J7KCH8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KCH8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCH8/entry", "sequence": { "sequence": "MGDAGSERSKAPSLPPRCXCGFWGSSKTMNLCSKCFADFQKKQPDDDSAPSTSNSQSDLFSEETTSDNSNTSITTPTLSPSQQSLPTELNVTSPSKEEYSQSENEASPVKRPRLLEGTERPEESSRSKQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGREEAIMKMVKLDRKVGRSCQRIGEGCS", "length": 205, "header": "tr|A0A9J7KCH8-1|A0A9J7KCH8_CRIGR Isoform 1 of AN1-type zinc finger protein 3 OS=Cricetulus griseus OX=10029 GN=Zfand3 PE=4 SV=1 CANONICAL=A0A9J7KCH8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KCH8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCH8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KCH8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCH8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100755969", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755969", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KCH8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCH8" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KCH8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCH8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 70, "end_pos": 72, "annotation": "n_glycosylation_sequon" }, { "start_pos": 90, "end_pos": 92, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7KCH8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCH8" }, { "id": "PS51036", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51036" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "A20-type", "eco_id": "ECO_0000259", "start_pos": 12, "end_pos": 44, "start_aa": "Pro", "end_aa": "Pro", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7KCH8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCH8" }, { "id": "PS51039", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51039" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "AN1-type", "eco_id": "ECO_0000259", "start_pos": 129, "end_pos": 178, "start_aa": "Gln", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 70, "end_pos": 72 }, { "start_pos": 90, "end_pos": 92 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7KCI0-1", "uniprot_ac": "A0A9J7KCI0", "uniprot_id": "A0A9J7KCI0_CRIGR", "mass": { "chemical_mass": 105824.0, "monoisotopic_mass": 105824.0 }, "refseq": { "ac": "XP_035304678", "name": "contactin-6", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304678" }, "gene_names": [ { "name": "LOC100772078", "type": "recommended", "evidence": [ { "id": "A0A9J7KCI0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCI0" } ] }, { "name": "LOC100772078", "type": "synonym", "evidence": [ { "id": "XP_035304678", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304678" } ] } ], "protein_names": [ { "name": "Contactin-6", "type": "synonym", "evidence": [ { "id": "A0A9J7KCI0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCI0/entry#names_and_taxonomy" } ] }, { "name": "contactin-6", "type": "synonym", "evidence": [ { "id": "XP_035304678", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304678" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048601.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035304678", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304678" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KCI0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCI0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100772078", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCI0", "locus": {} } ], "crossref": [ { "id": "A0A9J7KCI0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KCI0", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00063", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00063", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd04969", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04969", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100772078", "url": "https://www.ncbi.nlm.nih.gov/gene/100772078", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003961", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003961", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013098", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013098", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772078", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772078", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KCI0", "url": "https://www.orthodb.org/?gene=A0A9J7KCI0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR44170", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44170", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR44170:SF38", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44170:SF38", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00041", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00041", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07679", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07679", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13927", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13927", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035304678", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304678", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KCI0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCI0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KCI0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCI0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTYHYRLDGGNLAISSPRTDQDIGTYQCLVTNTVGTILSRKAKLQFAYIEDFETKTRSTVSVREGQGVVLLCGPPPHFGDLSYAWTFNDNPLYVQEDKRRFVSQVTGNLYIAKVEPSDVGNYTCFVTNKEAHRSVQGPPTPLVQRTDGVMGEYEPKIEVRFPETIQAAKDSSVKLECFALGNPVPDISWRRLDGNPMPGKVKYSKSQAILEIPEFHQEDEGYYECIAGNLRGRNLAKGQLIFYAPPEWEQKIQNTYLSIYDSLFWECKASGKPNPWYTWLKNGERLHPEERIQIENGTLIITMLNVSDSGIYQCAAENKYQTIYANAELRVLASAPDFSKNPIKKTSVVQVGGDISIECKPNAFPKASISWKRGTESLRQSKRVFLLEDGSLKICNVTRSDAGSYTCVATNQFGNGKSSGSLIVKEKTVITTPPSKMDVTVGESIVLPCQVSHDPTMEVVFVWYFNGDVIDLKKGVAHFERIGGESVGDLMIRNIQLGHSGKYLCTVQTTLERLSAVADIIVRGPPGPPEDVKVEHISSTTSQLSWRPGPDNNSPIQIFTIQTRTPFSVGWQAVTTIPEILNGQTYNATVVGLSPWVEYEFRVVAGNNIGIGEPSKPSELLRTKASVPIVAPVNINGGGGSRSELVITWESIPEELQNGEGFGYIVMFRPVGSTTWMKERVALVESSRYIYRNESIMPLSPFEVKVGVYNNEGEGSLSTVSIVYSGEDEPQLAPRGTSVQSFSASEMEVSWNAIAWNRNTGRVLGYEVLYWTDNSKESMIGKSRVSGNVTTKNITGLRANTIYFASVRAYNTAGTGPSSPPVNVTTKKSPPSQPPANIAWKLSNSKLCLNWEHVKTMENESEVLGYKILYRQNRQSTAHILETNNTSAELLVPFEEDYLIEIRTVSDGGDGSSSEEIRIPKMSSLSSTGVQIFNPSTQFLSMVAIFYCFAIQPPSQ", "length": 956, "header": "tr|A0A9J7KCI0-1|A0A9J7KCI0_CRIGR Isoform 1 of Contactin-6 OS=Cricetulus griseus OX=10029 GN=LOC100772078 PE=4 SV=1 CANONICAL=A0A9J7KCI0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KCI0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCI0/entry", "sequence": { "sequence": "MTYHYRLDGGNLAISSPRTDQDIGTYQCLVTNTVGTILSRKAKLQFAYIEDFETKTRSTVSVREGQGVVLLCGPPPHFGDLSYAWTFNDNPLYVQEDKRRFVSQVTGNLYIAKVEPSDVGNYTCFVTNKEAHRSVQGPPTPLVQRTDGVMGEYEPKIEVRFPETIQAAKDSSVKLECFALGNPVPDISWRRLDGNPMPGKVKYSKSQAILEIPEFHQEDEGYYECIAGNLRGRNLAKGQLIFYAPPEWEQKIQNTYLSIYDSLFWECKASGKPNPWYTWLKNGERLHPEERIQIENGTLIITMLNVSDSGIYQCAAENKYQTIYANAELRVLASAPDFSKNPIKKTSVVQVGGDISIECKPNAFPKASISWKRGTESLRQSKRVFLLEDGSLKICNVTRSDAGSYTCVATNQFGNGKSSGSLIVKEKTVITTPPSKMDVTVGESIVLPCQVSHDPTMEVVFVWYFNGDVIDLKKGVAHFERIGGESVGDLMIRNIQLGHSGKYLCTVQTTLERLSAVADIIVRGPPGPPEDVKVEHISSTTSQLSWRPGPDNNSPIQIFTIQTRTPFSVGWQAVTTIPEILNGQTYNATVVGLSPWVEYEFRVVAGNNIGIGEPSKPSELLRTKASVPIVAPVNINGGGGSRSELVITWESIPEELQNGEGFGYIVMFRPVGSTTWMKERVALVESSRYIYRNESIMPLSPFEVKVGVYNNEGEGSLSTVSIVYSGEDEPQLAPRGTSVQSFSASEMEVSWNAIAWNRNTGRVLGYEVLYWTDNSKESMIGKSRVSGNVTTKNITGLRANTIYFASVRAYNTAGTGPSSPPVNVTTKKSPPSQPPANIAWKLSNSKLCLNWEHVKTMENESEVLGYKILYRQNRQSTAHILETNNTSAELLVPFEEDYLIEIRTVSDGGDGSSSEEIRIPKMSSLSSTGVQIFNPSTQFLSMVAIFYCFAIQPPSQ", "length": 956, "header": 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"https://www.uniprot.org/uniprotkb/A0A9J7KCQ8/entry", "sequence": { "sequence": "MTVSFTVLLCLGLTLGLRTTVLAGTLPKPILTVQPDSVVSEQTTVTFLCEETVGAQGYRLYKLEYYWDKEIPPNPNNKAEFTISKIGPTEAGQYFCQYRIGKNWSEYSDSLELVVTGVYSKPSLSAHPSPVVTEEGNVTLQCVSTQPYHKLILTKEGTKKHSWTLDSEYDHTTRQYQALFVVGPVSNCQRWTFRCYSFESNRQLVWSEPSDPLELLFSGTLHKPTIKAEPSPVFASGSPMNISCQGTLDAVMCFLHKEGSQKPLGTQTPKEPEIKSIFSISSVTEDTGGQYRCYCYNSAGWSEPSDTLELVVTGIYDSKLRLSARPSPVVTSGGNMTLQCVSRVFYHKFILTKEDQKFSSSLNSQYINSIKQYQALFSIDHVTADHRGTFRCYGYYNQTPQLWSVPSEPLEIHISGLSKKPSLLTHKVHILDPGESLTLQCCSDINYDRFALYKLGGVEVIQHGGQWTKAGLSMASFTLDHVNRSTGGQYRCYGAHKLSSEWSASSDPLDIMIAGKLPDSPSLSVKPNSTVLSGDNVTLLCQSAYMTDTFILSKEGAAHQPQQMKSKSQDGKFQAEFSMTAVTSALSGTYRCYRSRGSSPYLLSHASAPVELSVSASENKDYTVENLIRMGMAVLVLIVLAILVVEAWGSQSQTHHSAEM", "length": 660, "header": "tr|A0A9J7KCQ8-1|A0A9J7KCQ8_CRIGR Isoform 1 of LOW QUALITY PROTEIN: leukocyte immunoglobulin-like receptor subfamily B member 3 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100773177 PE=4 SV=1 CANONICAL=A0A9J7KCQ8-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 89, "start_aa": "Thr", "end_pos": 89, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr89", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"name": "GRB2-associated-binding protein 2-like", "type": "synonym", "evidence": [ { "id": "XP_035309424", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309424" }, { "id": "A0A9J7KCR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCR1/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 45% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276808.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309424", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309424" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KCR1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCR1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC118239752", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCR1", "locus": {} } ], "crossref": [ { "id": "A0A9J7KCR1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KCR1", "database": "AlphaFoldDB", "categories": [] }, { "id": "118239752", "url": "https://www.ncbi.nlm.nih.gov/gene/118239752", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": 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"start_aa": "Phe", "end_aa": "Thr", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7KCR5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCR5" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 23, "end_pos": 106, "start_aa": "Met", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7KCR8-1", "uniprot_ac": "A0A9J7KCR8", "uniprot_id": "A0A9J7KCR8_CRIGR", "mass": { "chemical_mass": 59485.0, "monoisotopic_mass": 59485.0 }, "refseq": { "ac": "XP_035309455", "name": "LOW QUALITY PROTEIN: GRB2-associated-binding protein 2-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309455" }, "gene_names": [ { "name": "LOC113838782", "type": "recommended", "evidence": [ { "id": "A0A9J7KCR8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCR8" } ] }, { "name": "LOC113838782", "type": "synonym", "evidence": [ { "id": "XP_035309455", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309455" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: GRB2-associated-binding protein 2-like", "type": "synonym", "evidence": [ { "id": "XP_035309455", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309455" }, { "id": "A0A9J7KCR8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCR8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 5% of CDS bases internal stop codons :: corrected 1 genomic stop codon ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276808.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309455", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309455" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KCR8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCR8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113838782", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCR8", "locus": {} } ], "crossref": [ { "id": "113838782", "url": "https://www.ncbi.nlm.nih.gov/gene/113838782", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046355", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046355", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113838782", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113838782", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KCR8", "url": "https://www.orthodb.org/?gene=A0A9J7KCR8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45960", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45960", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45960:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45960:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00169", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00169", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035309455", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309455", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KCR8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCR8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KCR8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCR8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNGEPDVLEYYKNEYSKKPLRIINLNFCMQLDVGLTFNKKELQKCFRFDIITNERTFYLVAETEADMNRWVQSICQICGFSQNKGNTNTLRNLSSVNHSLRSTPAEFSSSSQHLLQTRRSSPLLHSSQPAVSSHIQPALSASAPQEYQNLHQRISQRTENLRSATLSQSTRQESDTATQNLAQGNRHCISRVSGQVHDFYSLPKPSRQFKDHAFDLTHSQTKGSPTVSEADNEDVYTFKAPSNTLCPEFGDLLVESAIPPPPHHPKIPWCGSPQQRPPANDYKYPTXGVETACWSAKSPKRTIMGKSHSGSSDDNCVPINPGSSTLLSLEQTGDNSHSAYIPMNTVPHHFDPLGHPSTALPIHRVSSREREIHPAPVNCHLKPGQKAKPPPLDLRNNAVINELPFKSPITKSWSSQYCHSISTQNMTNTDSKDREENYVPMQNPMSSSPVPRGTNNPALKKSTGNVNYIALDFQPVSLSPHDKPSTSSVKSDEKVKYVQIDKIKTQALQKTIEEWKKIRQSSRPTKDAKLW", "length": 531, "header": "tr|A0A9J7KCR8-1|A0A9J7KCR8_CRIGR Isoform 1 of LOW QUALITY PROTEIN: GRB2-associated-binding protein 2-like OS=Cricetulus griseus OX=10029 GN=LOC113838782 PE=3 SV=1 CANONICAL=A0A9J7KCR8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KCR8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCR8/entry", "sequence": { "sequence": 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"sort_fields": [] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7KCS3-1", "uniprot_ac": "A0A9J7KCS3", "uniprot_id": "A0A9J7KCS3_CRIGR", "mass": { "chemical_mass": 48065.0, "monoisotopic_mass": 48065.0 }, "refseq": { "ac": "XP_035309471", "name": "polypyrimidine tract-binding protein 1-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309471" }, "gene_names": [ { "name": "LOC113838362", "type": "recommended", "evidence": [ { "id": "A0A9J7KCS3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCS3" } ] }, { "name": "LOC113838362", "type": "synonym", "evidence": [ { "id": "XP_035309471", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309471" } ] } ], "protein_names": [ { "name": "Heterogeneous nuclear ribonucleoprotein I", "type": "recommended", "evidence": [ { "id": "A0A9J7KCS3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCS3/entry#names_and_taxonomy" } ] }, { "name": "polypyrimidine tract-binding protein 1-like", "type": "synonym", "evidence": [ { "id": "XP_035309471", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309471" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276808.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309471", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309471" } ] }, { "annotation": "Plays a role in pre-mRNA splicing and in the regulation of alternative splicing events. Activates exon skipping of its own pre-mRNA during muscle cell differentiation. Binds to the polypyrimidine tract of introns. May promote RNA looping when bound to two separate polypyrimidine tracts in the same pre-mRNA. May promote the binding of U2 snRNP to pre-mRNA. Cooperates with RAVER1 to modulate switching between mutually exclusive exons during maturation of the TPM1 pre-mRNA. Represses the splicing of MAPT/Tau exon 10. Binds to polypyrimidine-rich controlling element (PCE) of CFTR and promotes exon skipping of CFTR exon 9, thereby antagonizing TIA1 and its role in exon inclusion of CFTR exon 9. Plays a role in the splicing of pyruvate kinase PKM by binding repressively to a polypyrimidine tract flanking PKM exon 9, inhibiting exon 9 inclusion and resulting in exon 10 inclusion and production of the PKM M2 isoform.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KCS3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCS3#function" }, { "database": "UniProtKB", "id": "ARBA00055436", "url": "https://www.uniprot.org/uniprotkb/ARBA00055436#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KCS3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCS3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113838362", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCS3", "locus": {} } ], "crossref": [ { "id": "A0A9J7KCS3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KCS3", "database": "AlphaFoldDB", "categories": [] }, { "id": "113838362", "url": "https://www.ncbi.nlm.nih.gov/gene/113838362", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006536", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006536", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021790", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021790", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055204", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055204", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113838362", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113838362", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KCS3", "url": "https://www.orthodb.org/?gene=A0A9J7KCS3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15592", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15592", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF11835", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11835", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13893", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13893", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22976", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22976", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035309471", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309471", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KCS3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCS3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KCS3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCS3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLKGKHQAFIEMNTEEAANNMVNYYTSVAPVLHGQPIYIQFSNHKELKTDSSPNHARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPLLRVLVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNRFQALLQYADPVSAQHAKLSLDGQNIYKAWCTLRIDFSKLTSLYVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGLSVPNVHGALAPLAIPSAASAAAAGRIAIPGLAGAGISVLLVSNLNPERVTPQSLFILFGVYGDVLRVKILFNNKENILVQMADGSQAQRAMSHLNGHKLHGKSLRIILSKHQSVQLPREGQEDQGLTKDYGSSPLHRFKKPGSKNFQNIFPPSPTLHLSNIPPSVSEDDLKNLFSSNGGVVKGFKFFQKDRKVALIQMGSVEEAVQTLIELHNHDLGDNHHLRVSFSKSTI", "length": 441, "header": "tr|A0A9J7KCS3-1|A0A9J7KCS3_CRIGR Isoform 1 of Heterogeneous nuclear ribonucleoprotein I OS=Cricetulus griseus OX=10029 GN=LOC113838362 PE=4 SV=1 CANONICAL=A0A9J7KCS3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KCS3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCS3/entry", "sequence": { "sequence": "MLKGKHQAFIEMNTEEAANNMVNYYTSVAPVLHGQPIYIQFSNHKELKTDSSPNHARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPLLRVLVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNRFQALLQYADPVSAQHAKLSLDGQNIYKAWCTLRIDFSKLTSLYVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGLSVPNVHGALAPLAIPSAASAAAAGRIAIPGLAGAGISVLLVSNLNPERVTPQSLFILFGVYGDVLRVKILFNNKENILVQMADGSQAQRAMSHLNGHKLHGKSLRIILSKHQSVQLPREGQEDQGLTKDYGSSPLHRFKKPGSKNFQNIFPPSPTLHLSNIPPSVSEDDLKNLFSSNGGVVKGFKFFQKDRKVALIQMGSVEEAVQTLIELHNHDLGDNHHLRVSFSKSTI", "length": 441, "header": "tr|A0A9J7KCS3-1|A0A9J7KCS3_CRIGR Isoform 1 of Heterogeneous nuclear ribonucleoprotein I OS=Cricetulus griseus OX=10029 GN=LOC113838362 PE=4 SV=1 CANONICAL=A0A9J7KCS3-1" }, "locus": {} } ], "glycosylation": [], 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"https://www.ebi.ac.uk/QuickGO/term/GO:0006397", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KCS3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCS3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7KCS3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCS3" }, { "id": "PS50102", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50102" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRM", "eco_id": "ECO_0000259", "start_pos": 95, "end_pos": 171, "start_aa": "Leu", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7KCS4-1", "uniprot_ac": "A0A9J7KCS4", "uniprot_id": "A0A9J7KCS4_CRIGR", "mass": { "chemical_mass": 60072.0, "monoisotopic_mass": 60072.0 }, "refseq": { "ac": "XP_035305005", "name": "MLV-related proviral Env polyprotein-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305005" }, "gene_names": [ { "name": "LOC118239316", "type": "recommended", "evidence": [ { "id": "A0A9J7KCS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCS4" } ] }, { "name": "LOC118239316", "type": "synonym", "evidence": [ { "id": "XP_035305005", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305005" } ] } ], "protein_names": [ { "name": "MLV-related proviral Env polyprotein-like", "type": "synonym", "evidence": [ { "id": "XP_035305005", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305005" }, { "id": "A0A9J7KCS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCS4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. 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domain protein 3-like 2B", "type": "synonym", "evidence": [ { "id": "A0A9J7KCS9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCS9/entry#names_and_taxonomy" } ] }, { "name": "methyl-CpG-binding domain protein 3-like 2B", "type": "synonym", "evidence": [ { "id": "XP_035305023", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305023" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 37% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035305023", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305023" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KCS9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCS9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC118239323", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCS9", "locus": {} } ], "crossref": [ { "id": "A0A9J7KCS9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KCS9", "database": "AlphaFoldDB", "categories": [] }, { "id": "118239323", "url": "https://www.ncbi.nlm.nih.gov/gene/118239323", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR025884", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025884", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032343", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032343", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:118239323", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118239323", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KCS9", "url": "https://www.orthodb.org/?gene=A0A9J7KCS9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PF14048", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14048", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16564", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16564", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035305023", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305023", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KCS9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCS9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KCS9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCS9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPQDLQNTRTQFAQKKVTAKHRIHAIPVRMTSSIFPRPVTRITSHPKNIIKYRKMLEENLGKPRQLCAFSRLQEYLLEDSKGGIQAEAKVPSGANCLHTSPHFTSIPPPSSEKMVQETVQLLPSPFSQGVTLPVALPPLPSLSSQVVTTTDIRRQAQKVNTARKRLAALLEADRLARQAENMAEQRRRVFWKLNEKKKKLENIRVANSASSL", "length": 212, "header": "tr|A0A9J7KCS9-1|A0A9J7KCS9_CRIGR Isoform 1 of Methyl-CpG-binding domain protein 3-like 2B OS=Cricetulus griseus OX=10029 GN=LOC118239323 PE=4 SV=1 CANONICAL=A0A9J7KCS9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KCS9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCS9/entry", "sequence": { "sequence": "MPQDLQNTRTQFAQKKVTAKHRIHAIPVRMTSSIFPRPVTRITSHPKNIIKYRKMLEENLGKPRQLCAFSRLQEYLLEDSKGGIQAEAKVPSGANCLHTSPHFTSIPPPSSEKMVQETVQLLPSPFSQGVTLPVALPPLPSLSSQVVTTTDIRRQAQKVNTARKRLAALLEADRLARQAENMAEQRRRVFWKLNEKKKKLENIRVANSASSL", "length": 212, "header": "tr|A0A9J7KCS9-1|A0A9J7KCS9_CRIGR Isoform 1 of Methyl-CpG-binding domain protein 3-like 2B OS=Cricetulus griseus OX=10029 GN=LOC118239323 PE=4 SV=1 CANONICAL=A0A9J7KCS9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035305101", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305101" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KCV5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCV5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113837384", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCV5", "locus": {} } ], "crossref": [ { "id": "113837384", "url": "https://www.ncbi.nlm.nih.gov/gene/113837384", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001763", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001763", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007074", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007074", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052613", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052613", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055105", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055105", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113837384", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113837384", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KCV5", "url": "https://www.orthodb.org/?gene=A0A9J7KCV5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13627", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13627", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13627:SF31", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13627:SF31", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04991", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04991", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22921", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22921", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035305101", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305101", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KCV5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCV5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KCV5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCV5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRLTRCWAALAAAIILNLLVFFYVSWLQHQPRNSRARGPRRTPATGPRVTVLIREFEAFDNAVPELVDSFLQQDPAQPVVVAADTLPYPPLALPRIPNVRLALLQPALDRSAAASRPETYVATEFVALVPDGTRAESPGHLERMVEALRGSSARLVAAPVATANPARCLALNISLREWTAHYGPAPGAPRCDALDGDAVVLLRSRDLFNLSAPLARPLATSLFLQTALRGWTVQLLGLTFAAARQPPLATAHARWKADREGRSRRAALLRALGIRLVSWGEGGRLEWFGCHKESARCFGTVAGDTPSYLYEGRWTPPCCLRALRETARYVVGVLEAAGVRYWLEGGSLLGAARHGDIIPWDYDVDLGIYLEDVGNCEQLRGAEAGSVVDERGFVWEKAVEGDFFRVQYSESNHLHVDLWPFYPRNGVMTKDTWLDHRQDVEFPEHFLQPLVPLAFAGFMAQAPNNYRRFLELKFGPGVIENPEYPNPALLSLAGG", "length": 495, "header": "tr|A0A9J7KCV5-1|A0A9J7KCV5_CRIGR Isoform 1 of Ribitol-5-phosphate transferase OS=Cricetulus griseus OX=10029 GN=LOC113837384 PE=3 SV=1 CANONICAL=A0A9J7KCV5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KCV5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCV5/entry", "sequence": { "sequence": "MRLTRCWAALAAAIILNLLVFFYVSWLQHQPRNSRARGPRRTPATGPRVTVLIREFEAFDNAVPELVDSFLQQDPAQPVVVAADTLPYPPLALPRIPNVRLALLQPALDRSAAASRPETYVATEFVALVPDGTRAESPGHLERMVEALRGSSARLVAAPVATANPARCLALNISLREWTAHYGPAPGAPRCDALDGDAVVLLRSRDLFNLSAPLARPLATSLFLQTALRGWTVQLLGLTFAAARQPPLATAHARWKADREGRSRRAALLRALGIRLVSWGEGGRLEWFGCHKESARCFGTVAGDTPSYLYEGRWTPPCCLRALRETARYVVGVLEAAGVRYWLEGGSLLGAARHGDIIPWDYDVDLGIYLEDVGNCEQLRGAEAGSVVDERGFVWEKAVEGDFFRVQYSESNHLHVDLWPFYPRNGVMTKDTWLDHRQDVEFPEHFLQPLVPLAFAGFMAQAPNNYRRFLELKFGPGVIENPEYPNPALLSLAGG", "length": 495, "header": "tr|A0A9J7KCV5-1|A0A9J7KCV5_CRIGR Isoform 1 of Ribitol-5-phosphate transferase OS=Cricetulus griseus OX=10029 GN=LOC113837384 PE=3 SV=1 CANONICAL=A0A9J7KCV5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KCV5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCV5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KCV5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCV5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113837384", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113837384", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KCV5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCV5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein O-linked glycosylation via mannose", "id": "GO:0035269", "url": 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"name": "LOC113839036", "type": "synonym", "evidence": [ { "id": "XP_035309622", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309622" } ] } ], "protein_names": [ { "name": "HAUS augmin-like complex subunit 6", "type": "synonym", "evidence": [ { "id": "XP_035309622", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309622" }, { "id": "A0A9J7KCW2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCW2/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276870.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309622", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309622" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KCW2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCW2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113839036", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCW2", "locus": {} } ], "crossref": [ { "id": "A0A9J7KCW2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KCW2", "database": "AlphaFoldDB", "categories": [] }, { "id": "113839036", "url": "https://www.ncbi.nlm.nih.gov/gene/113839036", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026797", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026797", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028163", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028163", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113839036", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113839036", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KCW2", "url": "https://www.orthodb.org/?gene=A0A9J7KCW2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16151", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16151", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16151:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16151:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14661", "url": 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"MSSARDTDFEKQHLWMYLQALGLDPSPGVTVGWKMVSHAHLGENMFDKLNRDAFYIVSYFLFQTLDGSLVKEVFRDCWPPFNQKRDREFRKHCCEWLKEISAGFPQVVGSLFLYPGGPKFIHLMYHFARYVAIKYIKTKSNDIHKEHNQESGSRREANTLGAVCDLANSPVPFSLQCAPSSDTNSFAVLEKDPNMRTPKEKNIMSFKKVPNSVEDSPLSDIAMNTQTSVFRGSLPAKKSDPFQKEQDLLVEEVVRVVLSDSPQFSEGKEVKLEELIDTLISNPFLTRKQIPRTPENLITEIRNSWRKTVETEDNRSSEGILVDVKAREVSPESSPVPNNQRELRMAIFSSDFDQSYLPEEKTVPDQLRSVPQKPLVTSQIGDPPTEDESDLVNKKSFSEQDLECVTTRLSETGQMETFSLAVDSGIDTVGRREEDSFRKSHHSQASCSEPSTRKTLFWDSFLRMSDIGILHETLPEVGYLSLNSSTTSETNFRLEPNSYVHSDAFPDDDGKRQATLEVDSSFQAILSSYEALKKSLNKIRQESHLSNSKTLEQDKVGLSPVAKDMQADDTHTFLGTQDLFYTEPSSHMSFDERTQSLSPLTKVSLVEQKLRTTLPCSLREFLPNLKEKEISNKSLEARKPLI", "length": 642, "header": "tr|A0A9J7KCW2-1|A0A9J7KCW2_CRIGR Isoform 1 of HAUS augmin-like complex subunit 6 OS=Cricetulus griseus OX=10029 GN=LOC113839036 PE=4 SV=1 CANONICAL=A0A9J7KCW2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KCW2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCW2/entry", "sequence": { "sequence": 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Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 22% of CDS bases frameshifts :: corrected 2 indels internal stop codons :: corrected 1 genomic stop codons ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023277010.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309687", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309687" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KCX9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCX9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113839038", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCX9", "locus": {} } ], "crossref": [ { "id": "113839038", "url": "https://www.ncbi.nlm.nih.gov/gene/113839038", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein 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"RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305270" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035305270", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305270" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KCY3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCY3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100763179", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCY3", "locus": {} } ], "crossref": [ { "id": "A0A9J7KCY3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KCY3", "database": "AlphaFoldDB", "categories": [] }, { "id": "100763179", "url": "https://www.ncbi.nlm.nih.gov/gene/100763179", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR025715", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025715", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052656", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052656", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763179", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763179", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KCY3", "url": "https://www.orthodb.org/?gene=A0A9J7KCY3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48426", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48426", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48426:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48426:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13865", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13865", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035305270", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305270", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KCY3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCY3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KCY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCY3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATQSAPKVVLKRTTKVSLNERFTNILKNKQPMPVNMRASMQQQQQLASARNRRLALQMENRPSVQAVLKLKQSSKQRLGKSNIQARLGRPIGTLARGAIGGSDLPIIQRGLPRGGLRGARATRTPLRGRKLLQGQNLLQGGRALATGMDLRRGGVRGRGGPGRVGLGRGAMGHGRICCRVPAMICPGREGFGGRGQGRGRRRGALTRPVLTKEQLDNQLDAYMSKTKGHLDAELDAYMAQTDPETND", "length": 248, "header": "tr|A0A9J7KCY3-1|A0A9J7KCY3_CRIGR Isoform 1 of Chromatin target of PRMT1 protein-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100763179 PE=4 SV=1 CANONICAL=A0A9J7KCY3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KCY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCY3/entry", "sequence": { "sequence": "MATQSAPKVVLKRTTKVSLNERFTNILKNKQPMPVNMRASMQQQQQLASARNRRLALQMENRPSVQAVLKLKQSSKQRLGKSNIQARLGRPIGTLARGAIGGSDLPIIQRGLPRGGLRGARATRTPLRGRKLLQGQNLLQGGRALATGMDLRRGGVRGRGGPGRVGLGRGAMGHGRICCRVPAMICPGREGFGGRGQGRGRRRGALTRPVLTKEQLDNQLDAYMSKTKGHLDAELDAYMAQTDPETND", "length": 248, "header": "tr|A0A9J7KCY3-1|A0A9J7KCY3_CRIGR Isoform 1 of Chromatin target of PRMT1 protein-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100763179 PE=4 SV=1 CANONICAL=A0A9J7KCY3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KCY3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCY3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KCY3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCY3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100763179", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763179", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KCY3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCY3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7KCY3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCY3" }, { "id": "SM01218", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01218" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Chromatin target of PRMT1 protein C-terminal", "eco_id": "ECO_0000259", "start_pos": 152, "end_pos": 245, "start_aa": "Arg", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7KCZ5-1", "uniprot_ac": "A0A9J7KCZ5", "uniprot_id": "A0A9J7KCZ5_CRIGR", "mass": { "chemical_mass": 67417.0, "monoisotopic_mass": 67417.0 }, "refseq": { "ac": "XP_035309735", "name": "LOW QUALITY PROTEIN: GRB2-associated-binding protein 2-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309735" }, "gene_names": [ { "name": "LOC113837924", "type": "recommended", "evidence": [ { "id": "A0A9J7KCZ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCZ5" } ] }, { "name": "LOC113837924", "type": "synonym", "evidence": [ { "id": "XP_035309735", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309735" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: GRB2-associated-binding protein 2-like", "type": "synonym", "evidence": [ { "id": "XP_035309735", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309735" }, { "id": "A0A9J7KCZ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCZ5/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 10% of CDS bases frameshifts :: corrected 2 indels ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023277111.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309735", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309735" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KCZ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCZ5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113837924", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCZ5", "locus": {} } ], "crossref": [ { "id": "113837924", "url": "https://www.ncbi.nlm.nih.gov/gene/113837924", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046355", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046355", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113837924", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113837924", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KCZ5", "url": "https://www.orthodb.org/?gene=A0A9J7KCZ5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45960", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45960", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45960:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45960:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00169", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00169", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035309735", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309735", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KCZ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCZ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KCZ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCZ5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLRKLLKKHGKSSSEESLLFDLCTSSQLTQQPMPLSTPACCSLQSSGNNVVCTGWLGKLTPEKRLRQYAWKKRWFILRSGKMSGDPDVLEYYKNEHSKKPLRIINLNFCMQLDVALTFNKKEPQRSFLFDIITNEXTFQLVTDTEADMNRWVQSICQICGFSQTKESTDTLRNLSSVNHSLCSSPAEFSSSSQHLLQTRKSSALSHSSQPTVSSHIQPALSTSTPQEYQHSHQCISQRTEKARSATFSQSTRQESDTATQNLAQGNRHCISRISGQVHGIYSLPKPSRQFKDHAFGIPHSHPMESLTVSEGDNEDVYTFKVTSRNLCQVFGDLHPKMPWCGNPLQRPPVNDYKYPRRGVETACWSAKSPKRTIMGRSDSDNSNYNCVPINPGSSTLQALEQTGDNSHSAYIPMNTVPHHFDPLGHPSTTLPIHNVSGQEREIQPPPVNRNLKPGRKAKPPPLDLRNNTVINELPFKSPVTKSWSSQDCHSISTNNITNTDSRDSEEYYVLMQNPMSSSPVPSGTNNPALXKSTGNENYITLDFQAVSLSPHCKPSTSSVTSDEIVKYVQIDKKKTQALQKTIQKWTKIQQSSRPSIDAKLW", "length": 601, "header": "tr|A0A9J7KCZ5-1|A0A9J7KCZ5_CRIGR Isoform 1 of LOW QUALITY PROTEIN: GRB2-associated-binding protein 2-like OS=Cricetulus griseus OX=10029 GN=LOC113837924 PE=3 SV=1 CANONICAL=A0A9J7KCZ5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KCZ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCZ5/entry", "sequence": { "sequence": "MLRKLLKKHGKSSSEESLLFDLCTSSQLTQQPMPLSTPACCSLQSSGNNVVCTGWLGKLTPEKRLRQYAWKKRWFILRSGKMSGDPDVLEYYKNEHSKKPLRIINLNFCMQLDVALTFNKKEPQRSFLFDIITNEXTFQLVTDTEADMNRWVQSICQICGFSQTKESTDTLRNLSSVNHSLCSSPAEFSSSSQHLLQTRKSSALSHSSQPTVSSHIQPALSTSTPQEYQHSHQCISQRTEKARSATFSQSTRQESDTATQNLAQGNRHCISRISGQVHGIYSLPKPSRQFKDHAFGIPHSHPMESLTVSEGDNEDVYTFKVTSRNLCQVFGDLHPKMPWCGNPLQRPPVNDYKYPRRGVETACWSAKSPKRTIMGRSDSDNSNYNCVPINPGSSTLQALEQTGDNSHSAYIPMNTVPHHFDPLGHPSTTLPIHNVSGQEREIQPPPVNRNLKPGRKAKPPPLDLRNNTVINELPFKSPVTKSWSSQDCHSISTNNITNTDSRDSEEYYVLMQNPMSSSPVPSGTNNPALXKSTGNENYITLDFQAVSLSPHCKPSTSSVTSDEIVKYVQIDKKKTQALQKTIQKWTKIQQSSRPSIDAKLW", "length": 601, "header": "tr|A0A9J7KCZ5-1|A0A9J7KCZ5_CRIGR Isoform 1 of LOW QUALITY PROTEIN: GRB2-associated-binding protein 2-like OS=Cricetulus griseus OX=10029 GN=LOC113837924 PE=3 SV=1 CANONICAL=A0A9J7KCZ5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [], "pathway": [ { "id": "cge:113837924", "name": "", "url": 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This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. 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"type": "synonym", "evidence": [ { "id": "XP_035307009", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307009" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035307009", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307009" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KE78", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE78" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Rrnad1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE78", "locus": {} } ], "crossref": [ { "id": "A0A9J7KE78", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KE78", "database": "AlphaFoldDB", "categories": [] }, { "id": "100752610", "url": "https://www.ncbi.nlm.nih.gov/gene/100752610", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR025714", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025714", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052220", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052220", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7KE78", "url": "https://www.orthodb.org/?gene=A0A9J7KE78", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12496", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12496", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12496:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12496:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13679", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13679", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035307009", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307009", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H7H2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7H2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H7H2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7H2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HAM8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAM8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HAM8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAM8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HBH3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBH3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HBH3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBH3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J7P6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7P6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J7P6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7P6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KD39", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD39", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KD39-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD39-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KE78", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE78", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KE78-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE78-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KE80", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE80", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KE80-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE80-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLGLKVCATNAQLSEFFIRWESLHIILGALEHCIDQADLELTEILLCLLNAEKGMCHYARLQTIFWRLFPRRQDRWSCHQTYGDQSLIHWQEFFTDSLWGTLPSSWQEALDGLTPPQLATLLLGMPREGEEIRYRSVWPLTLLALKSTACALAFTRTPGFQTPSEFLENPSQSSRLMAPFRKHVKPKKQHEIRRLGELVKKLSDLTGCTQVVDVGSGQGHLSRFMSLGLGLMVKSLEGNQRLVSRAQRLDQELLQALNKMEKRHPKVVQRGPRHSPHHVVQWVSPTALCEELLLPLETSGQGSARLLLTGLHACGDLSVALLRHFCCCSEVVALASVGCCYMKLSDPGSYPLSQWVAGLPGHELPYRLREGACHALEDYAERLQNAGPGLQTHCFRAALETVIRHVCPELRRPGVQGIPRVHELKIEEYVQQGLQRVGLDPQLPLDLAALRAQQAQENRVVAFFSLALMLAPLVETLILLDRLLYLEEQGFYAELLPIFSPELSPRNLVLVATKTPLGQAFSILENEDI", "length": 529, "header": "tr|A0A9J7KE78-1|A0A9J7KE78_CRIGR Isoform 1 of Protein RRNAD1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Rrnad1 PE=4 SV=1 CANONICAL=A0A9J7KE78-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H7H2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7H2/entry", "sequence": { "sequence": "MLGLKVCATNAQLSEFFIRWESLHIILGALEHCIDQADLELTEILLCLLNAEKGMCHYARLQTIFWRLFPRRQDRWSCHQTYGDQSLIHWQEFFTDSLWGTLPSSWQEALDGLTPPQLATLLLGMPREGEEIRYRSVWPLTLLALKSTACALAFTRTPGFQTPSEFLENPSQSSRLMAPFRKHVKPKKQHEIRRLGELVKKLSDLTGCTQVVDVGSGQGHLSRFMSLGLGLMVKSLEGNQRLVSRAQRLDQELLQALNKMEKRHPKVVQRGPRHSPHHVVQWVSPTALCEELLLPLETSGQGSARLLLTGLHACGDLSVALLRHFCCCSEVVALASVGCCYMKLSDPGSYPLSQWVAGLPGHELPYRLREGACHALEDYAERLQNAGPGLQTHCFRAALETVIRHVCPELRRPGVQGIPRVHELKIEE", "length": 428, "header": "tr|A0A9J7H7H2-1|A0A9J7H7H2_CRIGR Computationally mapped isoform of Protein RRNAD1 isoform X5 OS=Cricetulus griseus OX=10029 GN=Rrnad1 PE=4 SV=1 CANONICAL=A0A9J7KE78-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HAM8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAM8/entry", "sequence": { "sequence": "MARSARWTNPTTAGHPAAGNAQGRGGDQTPSEFLENPSQSSRLMAPFRKHVKPKKQHEIRRLGELVKKLSDLTGCTQVVDVGSGQGHLSRFMSLGLGLMVKSLEGNQRLVSRAQRLDQELLQALNKMEKRHPKVVQRGPRHSPHHVVQWVSPTALCEELLLPLETSGQGSARLLLTGLHACGDLSVALLRHFCCCSEVVALASVGCCYMKLSDPGSYPLSQWVAGLPGHELPYRLREGACHALEDYAERLQNAGPGLQTHCFRAALETVIRHVCPELRRPGVQGIPRVHELKIEEYVQQGLQRVGLDPQLPLDLAALRAQQAQENRVVAFFSLALMLAPLVETLILLDRLLYLEEQGFYAELLPIFSPELSPRNLVLVATKTPLGQAFSILENEDI", "length": 396, "header": "tr|A0A9J7HAM8-1|A0A9J7HAM8_CRIGR Computationally mapped isoform of Protein RRNAD1 isoform X8 OS=Cricetulus griseus OX=10029 GN=Rrnad1 PE=4 SV=1 CANONICAL=A0A9J7KE78-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HBH3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBH3/entry", "sequence": { "sequence": "MPREGEEIRYRSVWPLTLLALKSTACALAFTRTPGFQTPSEFLENPSQSSRLMAPFRKHVKPKKQHEIRRLGELVKKLSDLTGCTQVVDVGSGQGHLSRFMSLGLGLMVKSLEGNQRLVSRAQRLDQELLQALNKMEKRHPKVVQRGPRHSPHHVVQWVSPTALCEELLLPLETSGQGSARLLLTGLHACGDLSVALLRHFCCCSEVVALASVGCCYMKLSDPGSYPLSQWVAGLPGHELPYRLREGACHALEDYAERLQNAGPGLQTHCFRAALETVIRHVCPELRRPGVQGIPRVHELKIEEYVQQGLQRVGLDPQLPLDLAALRAQQAQENRVVAFFSLALMLAPLVETLILLDRLLYLEEQGFYAELLPIFSPELSPRNLVLVATKTPLGQAFSILENEDI", "length": 405, "header": "tr|A0A9J7HBH3-1|A0A9J7HBH3_CRIGR Computationally mapped isoform of Protein RRNAD1 isoform X7 OS=Cricetulus griseus OX=10029 GN=Rrnad1 PE=4 SV=1 CANONICAL=A0A9J7KE78-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J7P6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7P6/entry", "sequence": { "sequence": "MARSARWTNPTTAGHPAAGNAQGRGGDQPGLDYLRYRSVWPLTLLALKSTACALAFTRTPGFQTPSEFLENPSQSSRLMAPFRKHVKPKKQHEIRRLGELVKKLSDLTGCTQVVDVGSGQGHLSRFMSLGLGLMVKSLEGNQRLVSRAQRLDQELLQALNKMEKRHPKVVQRGPRHSPHHVVQWVSPTALCEELLLPLETSGQGSARLLLTGLHACGDLSVALLRHFCCCSEVVALASVGCCYMKLSDPGSYPLSQWVAGLPGHELPYRLREGACHALEDYAERLQNAGPGLQTHCFRAALETVIRHVCPELRRPGVQGIPRVHELKIEEYVQQGLQRVGLDPQLPLDLAALRAQQAQENRVVAFFSLALMLAPLVETLILLDRLLYLEEQGFYAELLPIFSPELSPRNLVLVATKTPLGQAFSILENEDI", "length": 431, "header": "tr|A0A9J7J7P6-1|A0A9J7J7P6_CRIGR Computationally mapped isoform of Protein RRNAD1 isoform X4 OS=Cricetulus griseus OX=10029 GN=Rrnad1 PE=4 SV=1 CANONICAL=A0A9J7KE78-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KD39-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD39/entry", "sequence": { "sequence": "MCHYARLQTIFWRLFPRRQDRWSCHQTYGDQSLIHWQEFFTDSLWGTLPSSWQEALDGLTPPQLATLLLGMPREGEEIRYRSVWPLTLLALKSTACALAFTRTPGFQTPSEFLENPSQSSRLMAPFRKHVKPKKQHEIRRLGELVKKLSDLTGCTQVVDVGSGQGHLSRFMSLGLGLMVKSLEGNQRLVSRAQRLDQELLQALNKMEKRHPKVVQRGPRHSPHHVVQWVSPTALCEELLLPLETSGQGSARLLLTGLHACGDLSVALLRHFCCCSEVVALASVGCCYMKLSDPGSYPLSQWVAGLPGHELPYRLREGACHALEDYAERLQNAGPGLQTHCFRAALETVIRHVCPELRRPGVQGIPRVHELKIEEYVQQGLQRVGLDPQLPLDLAALRAQQAQENRVVAFFSLALMLAPLVETLILLDRLLYLEEQGFYAELLPIFSPELSPRNLVLVATKTPLGQAFSILENEDI", "length": 475, "header": "tr|A0A9J7KD39-1|A0A9J7KE78_CRIGR Computationally mapped isoform of Protein RRNAD1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Rrnad1 PE=4 SV=1 CANONICAL=A0A9J7KE78-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KE78-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE78/entry", "sequence": { "sequence": "MLGLKVCATNAQLSEFFIRWESLHIILGALEHCIDQADLELTEILLCLLNAEKGMCHYARLQTIFWRLFPRRQDRWSCHQTYGDQSLIHWQEFFTDSLWGTLPSSWQEALDGLTPPQLATLLLGMPREGEEIRYRSVWPLTLLALKSTACALAFTRTPGFQTPSEFLENPSQSSRLMAPFRKHVKPKKQHEIRRLGELVKKLSDLTGCTQVVDVGSGQGHLSRFMSLGLGLMVKSLEGNQRLVSRAQRLDQELLQALNKMEKRHPKVVQRGPRHSPHHVVQWVSPTALCEELLLPLETSGQGSARLLLTGLHACGDLSVALLRHFCCCSEVVALASVGCCYMKLSDPGSYPLSQWVAGLPGHELPYRLREGACHALEDYAERLQNAGPGLQTHCFRAALETVIRHVCPELRRPGVQGIPRVHELKIEEYVQQGLQRVGLDPQLPLDLAALRAQQAQENRVVAFFSLALMLAPLVETLILLDRLLYLEEQGFYAELLPIFSPELSPRNLVLVATKTPLGQAFSILENEDI", "length": 529, "header": "tr|A0A9J7KE78-1|A0A9J7KE78_CRIGR Isoform 1 of Protein RRNAD1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Rrnad1 PE=4 SV=1 CANONICAL=A0A9J7KE78-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KE80-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE80/entry", "sequence": { "sequence": "MARSARWTNPTTAGHPAAGNAQGRGGDQSTACALAFTRTPGFQTPSEFLENPSQSSRLMAPFRKHVKPKKQHEIRRLGELVKKLSDLTGCTQVVDVGSGQGHLSRFMSLGLGLMVKSLEGNQRLVSRAQRLDQELLQALNKMEKRHPKVVQRGPRHSPHHVVQWVSPTALCEELLLPLETSGQGSARLLLTGLHACGDLSVALLRHFCCCSEVVALASVGCCYMKLSDPGSYPLSQWVAGLPGHELPYRLREGACHALEDYAERLQNAGPGLQTHCFRAALETVIRHVCPELRRPGVQGIPRVHELKIEEYVQQGLQRVGLDPQLPLDLAALRAQQAQENRVVAFFSLALMLAPLVETLILLDRLLYLEEQGFYAELLPIFSPELSPRNLVLVATKTPLGQAFSILENEDI", "length": 411, "header": "tr|A0A9J7KE80-1|A0A9J7KE80_CRIGR Computationally mapped isoform of Protein RRNAD1 isoform X6 OS=Cricetulus griseus OX=10029 GN=Rrnad1 PE=4 SV=1 CANONICAL=A0A9J7KE78-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KD39", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD39" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KD39", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD39" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7KE78", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE78" }, { "id": "PF13679", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13679" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Methyltransferase", "eco_id": "ECO_0000259", "start_pos": 187, "end_pos": 345, "start_aa": "Lys", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7KD41-1", "uniprot_ac": "A0A9J7KD41", "uniprot_id": "A0A9J7KD41_CRIGR", "mass": { "chemical_mass": 113757.0, "monoisotopic_mass": 113757.0 }, "refseq": { "ac": "XP_027289708", "name": "zinc finger protein 420 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289708" }, "gene_names": [ { "name": "LOC100763047", "type": "recommended", "evidence": [ { "id": "A0A9J7KD41", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD41" } ] }, { "name": "LOC100763047", "type": "synonym", "evidence": [ { "id": "XP_027289708", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289708" } ] } ], "protein_names": [ { "name": "Zinc finger protein 420 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7KD41", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD41/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 420 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027289708", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289708" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027289708.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027289708", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289708" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KD41", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD41" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100763047", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD41", "locus": {} } ], "crossref": [ { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100763047", "url": "https://www.ncbi.nlm.nih.gov/gene/100763047", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763047", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763047", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KD41", "url": "https://www.orthodb.org/?gene=A0A9J7KD41", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23226", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23226", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23226:SF416", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23226:SF416", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13465", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13465", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027289708", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289708", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H8U1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8U1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H8U1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8U1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KD41", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD41", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KD41-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD41-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDASVSNAPQALEHIRKVMEERDLMNGLLSFRDVSVDFSQEEWECLDCAQRALYMDVMLENYCNLLFVENHRTCGKCEEILHRGTKHFIHDHENIQEKTYKCNELGKVIHESCQCTPYNTSDTAENYNKYRFGNHRDACVETLNINRHKSSKAGEELCKYTDCVNCFNLCSIISENQRTLRVKEDYKNTEYDNSFESNTEITLKQTCCRKNLYQCRKCGKFFKTHSSLIGHQRVHSIDKSFKCTKCSKSFLHFSQLKVHYKIYCRENPYKCTECGKCFYNTWDFEKHYQIHMGEKPYKCGECDKSFLSASYLRIHQRIHTGEKPYKCSECDKSFTTKDHLQSHQRIHTGEKPYKCGECDKSFLSASYLRIHQRIHTGEKPYKCSECDKSFTTKDHLQSHQRIHTGEKPYKCGECEKSFLSASYLRIHQRIHTGEKPYKCSECDKSFTTKDHLQSHQRIHTGEKPYKCGECDKSFLSASYLRIHQRIHTGEKPYKCSECDKSFTTKDHLQSHQRIHTGEKPYKCGECDKSFLSASYLRIHQRIHTGEKPYKCSECDKSFTTKDHLQSHQRIHTGEKPYKCGECDKSFLSASYLRIHQRIHTGEKPYKCSECDKSFTTKDHLQSHQRIHTGEKPYKCGECDKSFLSASYLRIHQRIHTGEKPYKCSECDKSFTTKDHLQSHQRIHTGEKPFKCSQCSKCFITRDHLRTHQRIHTGEKPYKCGQCDKCFTSASNLRTHLKRHTGEKPYKCSECDKSFKTSSNLRTHQRIHTGEKPYKCSQCHKSFTEKGTFRNHERIHTGEKPYKCSQCHKSFTEKGTFRNHERIHTGEKPYKCSQCHKSFTKKVTFRTHQRIHTGEKPYKCSECEKSFTGRGNLRTHQRIHTGEKPYRCSECGKSFNTKDNLRSHQRIHTGEKPYKCGECDRSFTWDSSLRIHQRMHTGEKSYKCSECDKSFTTKGNLKTHQRLHTFEKL", "length": 968, "header": "tr|A0A9J7KD41-1|A0A9J7KD41_CRIGR Isoform 1 of Zinc finger protein 420 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100763047 PE=3 SV=1 CANONICAL=A0A9J7KD41-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H8U1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8U1/entry", "sequence": { "sequence": "MDASVSNAPQGLLSFRDVSVDFSQEEWECLDCAQRALYMDVMLENYCNLLFVENHRTCGKCEEILHRGTKHFIHDHENIQEKTYKCNELGKVIHESCQCTPYNTSDTAENYNKYRFGNHRDACVETLNINRHKSSKAGEELCKYTDCVNCFNLCSIISENQRTLRVKEDYKNTEYDNSFESNTEITLKQTCCRKNLYQCRKCGKFFKTHSSLIGHQRVHSIDKSFKCTKCSKSFLHFSQLKVHYKIYCRENPYKCTECGKCFYNTWDFEKHYQIHMGEKPYKCGECDKSFLSASYLRIHQRIHTGEKPYKCSECDKSFTTKDHLQSHQRIHTGEKPYKCGECDKSFLSASYLRIHQRIHTGEKPYKCSECDKSFTTKDHLQSHQRIHTGEKPYKCGECEKSFLSASYLRIHQRIHTGEKPYKCSECDKSFTTKDHLQSHQRIHTGEKPYKCGECDKSFLSASYLRIHQRIHTGEKPYKCSECDKSFTTKDHLQSHQRIHTGEKPYKCGECDKSFLSASYLRIHQRIHTGEKPYKCSECDKSFTTKDHLQSHQRIHTGEKPYKCGECDKSFLSASYLRIHQRIHTGEKPYKCSECDKSFTTKDHLQSHQRIHTGEKPYKCGECDKSFLSASYLRIHQRIHTGEKPYKCSECDKSFTTKDHLQSHQRIHTGEKPFKCSQCSKCFITRDHLRTHQRIHTGEKPYKCGQCDKCFTSASNLRTHLKRHTGEKPYKCSECDKSFKTSSNLRTHQRIHTGEKPYKCSQCHKSFTEKGTFRNHERIHTGEKPYKCSQCHKSFTEKGTFRNHERIHTGEKPYKCSQCHKSFTKKVTFRTHQRIHTGEKPYKCSECEKSFTGRGNLRTHQRIHTGEKPYRCSECGKSFNTKDNLRSHQRIHTGEKPYKCGECDRSFTWDSSLRIHQRMHTGEKSYKCSECDKSFTTKGNLKTHQRLHTFEKL", "length": 952, "header": "tr|A0A9J7H8U1-1|A0A9J7H8U1_CRIGR Computationally mapped isoform of Zinc finger protein 420 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100763047 PE=3 SV=1 CANONICAL=A0A9J7KD41-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KD41-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD41/entry", "sequence": { "sequence": "MDASVSNAPQALEHIRKVMEERDLMNGLLSFRDVSVDFSQEEWECLDCAQRALYMDVMLENYCNLLFVENHRTCGKCEEILHRGTKHFIHDHENIQEKTYKCNELGKVIHESCQCTPYNTSDTAENYNKYRFGNHRDACVETLNINRHKSSKAGEELCKYTDCVNCFNLCSIISENQRTLRVKEDYKNTEYDNSFESNTEITLKQTCCRKNLYQCRKCGKFFKTHSSLIGHQRVHSIDKSFKCTKCSKSFLHFSQLKVHYKIYCRENPYKCTECGKCFYNTWDFEKHYQIHMGEKPYKCGECDKSFLSASYLRIHQRIHTGEKPYKCSECDKSFTTKDHLQSHQRIHTGEKPYKCGECDKSFLSASYLRIHQRIHTGEKPYKCSECDKSFTTKDHLQSHQRIHTGEKPYKCGECEKSFLSASYLRIHQRIHTGEKPYKCSECDKSFTTKDHLQSHQRIHTGEKPYKCGECDKSFLSASYLRIHQRIHTGEKPYKCSECDKSFTTKDHLQSHQRIHTGEKPYKCGECDKSFLSASYLRIHQRIHTGEKPYKCSECDKSFTTKDHLQSHQRIHTGEKPYKCGECDKSFLSASYLRIHQRIHTGEKPYKCSECDKSFTTKDHLQSHQRIHTGEKPYKCGECDKSFLSASYLRIHQRIHTGEKPYKCSECDKSFTTKDHLQSHQRIHTGEKPFKCSQCSKCFITRDHLRTHQRIHTGEKPYKCGQCDKCFTSASNLRTHLKRHTGEKPYKCSECDKSFKTSSNLRTHQRIHTGEKPYKCSQCHKSFTEKGTFRNHERIHTGEKPYKCSQCHKSFTEKGTFRNHERIHTGEKPYKCSQCHKSFTKKVTFRTHQRIHTGEKPYKCSECEKSFTGRGNLRTHQRIHTGEKPYRCSECGKSFNTKDNLRSHQRIHTGEKPYKCGECDRSFTWDSSLRIHQRMHTGEKSYKCSECDKSFTTKGNLKTHQRLHTFEKL", "length": 968, "header": "tr|A0A9J7KD41-1|A0A9J7KD41_CRIGR Isoform 1 of Zinc finger protein 420 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100763047 PE=3 SV=1 CANONICAL=A0A9J7KD41-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KD41", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD41" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KD41", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD41" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100763047", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763047", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KD41", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD41" } ], "pmid": "" }, { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KD41", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD41" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KD41", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD41" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KD41", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD41" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KD41", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD41" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KD41", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD41" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 119, "end_pos": 121, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7KD41", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD41" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 213, "end_pos": 240, "start_aa": "Tyr", "end_aa": "Ser", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7KD41", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD41" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 29, "end_pos": 100, "start_aa": "Leu", "end_aa": "Tyr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 119, "end_pos": 121 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7KE82-1", "uniprot_ac": "A0A9J7KE82", "uniprot_id": "A0A9J7KE82_CRIGR", "mass": { "chemical_mass": 228793.0, "monoisotopic_mass": 228793.0 }, "refseq": { "ac": "XP_035307024", "name": "nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307024" }, "gene_names": [ { "name": "LOC118239501", "type": "recommended", "evidence": [ { "id": "A0A9J7KE82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE82" } ] }, { "name": "LOC118239501", "type": "synonym", "evidence": [ { "id": "XP_035307024", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307024" } ] } ], "protein_names": [ { "name": "Nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7KE82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE82/entry#names_and_taxonomy" } ] }, { "name": "nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X1", "type": "synonym", "evidence": [ { "id": "XP_035307024", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307024" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035307024", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307024" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KE82", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE82" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC118239501", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE82", "locus": {} } ], "crossref": [ { "id": "118239501", "url": "https://www.ncbi.nlm.nih.gov/gene/118239501", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:118239501", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118239501", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KE82", "url": "https://www.orthodb.org/?gene=A0A9J7KE82", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "XP_035307024", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307024", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KD44", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD44", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KD44-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD44-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KE82", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE82", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KE82-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE82-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLPTWAAQTHLFPSLYLLFYFGFYFCFSPAVLPMSSALNVTAALGQPGLPPPCSLASQQSPLVTANQPSPFPSSSISSAPFEVPFPQPSSDTAVPLGAAPHTPTFLPHLIGPPISPAALALASPMIGAAQKGARSSSAPLSLVAVAPHSVQKTHPPASPSSISVASIASLEPKSSASQVPCQVFPNMKDAAPSPPGVVGIFPSSPETSLACVPPGLASCPQTLSITPTVTSPVKVIPISSALMPQNTLSPNLKRPDSSFLAQNTVAPNVLPVAPTSLCSHVPSSHRSSSDSPIQPLRQSGPGALSDPTVSDAISVDHSAVEASCPSERSVIPHLSSFQTGFLPSRHELVADSVAALSVGASASTPAPSVGKGTPALTSVLCSPPSSSAVATTLSPTASLIPKGSSNATHQPLVPPIPTSQKTDLKETPVSGVGAIQPAMDNPSTISVAPATCVSPSVSSGKDPATISLVAPAVYKQFPAPPVSPTLGLPATEGLKNLPTPVLVNVGAPVSPAQAGRPARRDPTLLPLSLTVQKEIPSPQSASPVEELAPIVKAAIASSSSPSTDASAAIVRADPVSLSPKHSVTAPTMAPGFLESCDPEELAPRAAKGTSPATSTTSPLVPLASEGCPMVPSMAFPLESVPFHAPPPAGISFSGAKKGDGVSSVASLPSSPEGHPEDLGASVSSKGTLAHPAGCPSLETGVSPQTKGPSPKKDSALPGVSPADLSLSTPEASFLPGASLSFQGPKDPLNLSPIPPSSRGASAAPTETSVSPQKTPATSFLKDAHTVPAEIPLSPQKTTDTIASKLDSVTQPHSVPPIVPDVTPLSPKKTPTTPVSKDTSAALWLESVPAVTSLPPQKVPTAPSLTGTPIVPTESSLSLKNAPATATLKETLAASPPKVATIPAVTSLSPEKTPKSISPKGAPDKPSKKAPVASRVSPPKFPTEAPCVPAVAPPSPPKPTATEAISEVLTGPYSPKGAPATLAEGPSSPKRASKTAAPKETPPEGVTAVPLEITPSPKKTSKTIAPNEHATSFSKKSPKNAAPKETPTPSDSVTTASLEIPPVPKKAPKTATPKETLATPSVGITAVPLEISPSPKKAASPNENSAPSPKKSPKITAPKETPTPPSKGVTTASLEIPPSPKKAPKTAAQKQVSVTPSPKGAPATSAESPASPKTAAPKEAPAAPSPEGSSAVPLQIAPSPKKAPKENSAKSSPKKTPKTADPKETPITSSEGVTTAPLEITPSPKKASKTAAPKKTPATPSPEGSPALPLEITPSPQKISKTAAPKETSAVLSPKKSPKTAAPKETPVTSSEEVTTAPQQISPSPPTAAPKQVSVTPSPKGAPATSAESPASPKTAAPKEAPAAPSPEGSSAVPLQIAPSPKKAPKENSAKSSPKKTPKTADPKETPITSSEGVTTAPLEITPSPKKASKTAAPKKTPATPSPEGSPALPLEITPSPQKISKTAAPKETSAVLSPKKSPKTAAPKETPVTSSEEVTTAPQQISPSPPTAAPKQVPVTPSPKGAPATLAESPASPQQAPKTVAPKETLATPHPQRTSKTAAPKETPAILTPEGVTAVTLGTPPSPQKASKIASSKETSAMSSPQRSSKTASPSSKGVVVVPPEAALSPRKAPKMSGPKETPTVPSLEGVTAGPPEISSSPKKAPKMAGPKETLVTPSSKKLPQTVGPKEIPAKPPSPKKTSKTAAAAPKETSTPSSKGVTAVPLETDSFPQKATKTAGPKEAPAVSPEGVTTAQKNPPTPLKASATPASRAIPADTQGAAVSSSRKKAPVPVALTEAPAALSPSGVPAVIPPSPSKSPKTPSSKKAPRTSAPTEFPANPFLEVVTTSLPEMAPSLQKTPATAASKEDSVTPAAPIYTKKAPAPSCPERAPNAPVTVAPREASPVPSPKKAPVTETSKEISTSPSPKVTPTISSVAPISPKEAPAVSASQKAPAPKETSESSTSKGVLSPTVNSPSAPKKALSSSRASALPAVTLPSLKEAPILSPITPSPKDSPTSPVSATCSTGTVSPQVSEKLPAKKDPTTLKEVLATPTPESALAITAPIQKGLRAKNLTSPPKCSDPSAKKDTKGPLSAVALAPLTDPVEKDSSKTTKALPDSSTKGKDCLHSPKGPVSASPGSQVATPLAAVSSNKAHPEAGSASVLPRPTPPASLTLAPSPVPPLLPKQPFLQPSPGSVLESASKLPAPADEDELPPLIPPEAVSGGVPFQPVLINMSTPKPAGIPAPAPSAKQPVLKDNKGICLGLLCAWCVAHTPLGAAHQY", "length": 2278, "header": "tr|A0A9J7KE82-1|A0A9J7KE82_CRIGR Isoform 1 of Nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC118239501 PE=4 SV=1 CANONICAL=A0A9J7KE82-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KD44-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD44/entry", "sequence": { "sequence": "MLPTWAAQTHLFPSLYLLFYFGFYFCFSPAVLPMSSALNVTAALGQPGLPPPCSLASQQSPLVTANQPSPFPSSSISSAPFEVPFPQPSSDTAVPLGAAPHTPTFLPHLIGPPISPAALALASPMIGAAQKGARSSSAPLSLVAVAPHSVQKTHPPASPSSISVASIASLEPKSSASQVPCQVFPNMKDAAPSPPGVVGIFPSSPETSLACVPPGLASCPQTLSITPTVTSPVKVIPISSALMPQNTLSPNLKRPDSSFLAQNTVAPNVLPVAPTSLCSHVPSSHRSSSDSPIQPLRQSGPGALSDPTVSDAISVDHSAVEASCPSERSVIPHLSSFQTGFLPSRHELVADSVAALSVGASASTPAPSVGKGTPALTSVLCSPPSSSAVATTLSPTASLIPKGSSNATHQPLVPPIPTSQKTDLKETPVSGVGAIQPAMDNPSTISVAPATCVSPSVSSGKDPATISLVAPAVYKQFPAPPVSPTLGLPATEGLKNLPTPVLVNVGAPVSPAQAGRPARRDPTLLPLSLTVQKEIPSPQSASPVEELAPIVKAAIASSSSPSTDASAAIVRADPVSLSPKHSVTAPTMAPGFLESCDPEELAPRAAKGTSPATSTTSPLVPLASEGCPMVPSMAFPLESVPFHAPPPAGISFSGAKKGDGVSSVASLPSSPEGHPEDLGASVSSKGTLAHPAGCPSLETGVSPQTKGPSPKKDSALPGVSPADLSLSTPEASFLPGASLSFQGPKDPLNLSPIPPSSRGASAAPTETSVSPQKTPATSFLKDAHTVPAEIPLSPQKTTDTIASKLDSVTQPHSVPPIVPDVTPLSPKKTPTTPVSKDTSAALWLESVPAVTSLPPQKVPTAPSLTGTPIVPTESSLSLKNAPATATLKETLAASPPKVATIPAVTSLSPEKTPKSISPKGAPDKPSKKAPVASRVSPPKFPTEAPCVPAVAPPSPPKPTATEAISEVLTGPYSPKGAPATLAEGPSSPKRASKTAAPKETPPEGVTAVPLEITPSPKKTSKTIAPNEHATSFSKKSPKNAAPKETPTPSDSVTTASLEIPPVPKKAPKTATPKETLATPSVGITAVPLEISPSPKKAASPNENSAPSPKKSPKITAPKETPTPPSKGVTTASLEIPPSPKKAPKTAAQKQVSVTPSPKGAPATSAESPASPKTAAPKEAPAAPSPEGSSAVPLQIAPSPKKAPKENSAKSSPKKTPKTADPKETPITSSEGVTTAPLEITPSPKKASKTAAPKKTPATPSPEGSPALPLEITPSPQKISKTAAPKETSAVLSPKKSPKTAAPKETPVTSSEEVTTAPQQISPSPPTAAPKQVPVTPSPKGAPATLAESPASPQQAPKTVAPKETLATPHPQRTSKTAAPKETPAILTPEGVTAVTLGTPPSPQKASKIASSKETSAMSSPQRSSKTASPSSKGVVVVPPEAALSPRKAPKMSGPKETPTVPSLEGVTAGPPEISSSPKKAPKMAGPKETLVTPSSKKLPQTVGPKEIPAKPPSPKKTSKTAAAAPKETSTPSSKGVTAVPLETDSFPQKATKTAGPKEAPAVSPEGVTTAQKNPPTPLKASATPASRAIPADTQGAAVSSSRKKAPVPVALTEAPAALSPSGVPAVIPPSPSKSPKTPSSKKAPRTSAPTEFPANPFLEVVTTSLPEMAPSLQKTPATAASKEDSVTPAAPIYTKKAPAPSCPERAPNAPVTVAPREASPVPSPKKAPVTETSKEISTSPSPKVTPTISSVAPISPKEAPAVSASQKAPAPKETSESSTSKGVLSPTVNSPSAPKKALSSSRASALPAVTLPSLKEAPILSPITPSPKDSPTSPVSATCSTGTVSPQVSEKLPAKKDPTTLKEVLATPTPESALAITAPIQKGLRAKNLTSPPKCSDPSAKKDTKGPLSAVALAPLTDPVEKDSSKTTKALPDSSTKGKDCLHSPKGPVSASPGSQVATPLAAVSSNKAHPEAGSASVLPRPTPPASLTLAPSPVPPLLPKQPFLQPSPGSVLESASKLPAPADEDELPPLIPPEAVSGGVPFQPVLINMSTPKPAGIPAPAPSAKQPVLKDNKGICLGLLCAWCVAHTPLGAAHQY", "length": 2097, "header": "tr|A0A9J7KD44-1|A0A9J7KE82_CRIGR Computationally mapped isoform of Nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC118239501 PE=4 SV=1 CANONICAL=A0A9J7KE82-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KE82-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE82/entry", "sequence": { "sequence": "MLPTWAAQTHLFPSLYLLFYFGFYFCFSPAVLPMSSALNVTAALGQPGLPPPCSLASQQSPLVTANQPSPFPSSSISSAPFEVPFPQPSSDTAVPLGAAPHTPTFLPHLIGPPISPAALALASPMIGAAQKGARSSSAPLSLVAVAPHSVQKTHPPASPSSISVASIASLEPKSSASQVPCQVFPNMKDAAPSPPGVVGIFPSSPETSLACVPPGLASCPQTLSITPTVTSPVKVIPISSALMPQNTLSPNLKRPDSSFLAQNTVAPNVLPVAPTSLCSHVPSSHRSSSDSPIQPLRQSGPGALSDPTVSDAISVDHSAVEASCPSERSVIPHLSSFQTGFLPSRHELVADSVAALSVGASASTPAPSVGKGTPALTSVLCSPPSSSAVATTLSPTASLIPKGSSNATHQPLVPPIPTSQKTDLKETPVSGVGAIQPAMDNPSTISVAPATCVSPSVSSGKDPATISLVAPAVYKQFPAPPVSPTLGLPATEGLKNLPTPVLVNVGAPVSPAQAGRPARRDPTLLPLSLTVQKEIPSPQSASPVEELAPIVKAAIASSSSPSTDASAAIVRADPVSLSPKHSVTAPTMAPGFLESCDPEELAPRAAKGTSPATSTTSPLVPLASEGCPMVPSMAFPLESVPFHAPPPAGISFSGAKKGDGVSSVASLPSSPEGHPEDLGASVSSKGTLAHPAGCPSLETGVSPQTKGPSPKKDSALPGVSPADLSLSTPEASFLPGASLSFQGPKDPLNLSPIPPSSRGASAAPTETSVSPQKTPATSFLKDAHTVPAEIPLSPQKTTDTIASKLDSVTQPHSVPPIVPDVTPLSPKKTPTTPVSKDTSAALWLESVPAVTSLPPQKVPTAPSLTGTPIVPTESSLSLKNAPATATLKETLAASPPKVATIPAVTSLSPEKTPKSISPKGAPDKPSKKAPVASRVSPPKFPTEAPCVPAVAPPSPPKPTATEAISEVLTGPYSPKGAPATLAEGPSSPKRASKTAAPKETPPEGVTAVPLEITPSPKKTSKTIAPNEHATSFSKKSPKNAAPKETPTPSDSVTTASLEIPPVPKKAPKTATPKETLATPSVGITAVPLEISPSPKKAASPNENSAPSPKKSPKITAPKETPTPPSKGVTTASLEIPPSPKKAPKTAAQKQVSVTPSPKGAPATSAESPASPKTAAPKEAPAAPSPEGSSAVPLQIAPSPKKAPKENSAKSSPKKTPKTADPKETPITSSEGVTTAPLEITPSPKKASKTAAPKKTPATPSPEGSPALPLEITPSPQKISKTAAPKETSAVLSPKKSPKTAAPKETPVTSSEEVTTAPQQISPSPPTAAPKQVSVTPSPKGAPATSAESPASPKTAAPKEAPAAPSPEGSSAVPLQIAPSPKKAPKENSAKSSPKKTPKTADPKETPITSSEGVTTAPLEITPSPKKASKTAAPKKTPATPSPEGSPALPLEITPSPQKISKTAAPKETSAVLSPKKSPKTAAPKETPVTSSEEVTTAPQQISPSPPTAAPKQVPVTPSPKGAPATLAESPASPQQAPKTVAPKETLATPHPQRTSKTAAPKETPAILTPEGVTAVTLGTPPSPQKASKIASSKETSAMSSPQRSSKTASPSSKGVVVVPPEAALSPRKAPKMSGPKETPTVPSLEGVTAGPPEISSSPKKAPKMAGPKETLVTPSSKKLPQTVGPKEIPAKPPSPKKTSKTAAAAPKETSTPSSKGVTAVPLETDSFPQKATKTAGPKEAPAVSPEGVTTAQKNPPTPLKASATPASRAIPADTQGAAVSSSRKKAPVPVALTEAPAALSPSGVPAVIPPSPSKSPKTPSSKKAPRTSAPTEFPANPFLEVVTTSLPEMAPSLQKTPATAASKEDSVTPAAPIYTKKAPAPSCPERAPNAPVTVAPREASPVPSPKKAPVTETSKEISTSPSPKVTPTISSVAPISPKEAPAVSASQKAPAPKETSESSTSKGVLSPTVNSPSAPKKALSSSRASALPAVTLPSLKEAPILSPITPSPKDSPTSPVSATCSTGTVSPQVSEKLPAKKDPTTLKEVLATPTPESALAITAPIQKGLRAKNLTSPPKCSDPSAKKDTKGPLSAVALAPLTDPVEKDSSKTTKALPDSSTKGKDCLHSPKGPVSASPGSQVATPLAAVSSNKAHPEAGSASVLPRPTPPASLTLAPSPVPPLLPKQPFLQPSPGSVLESASKLPAPADEDELPPLIPPEAVSGGVPFQPVLINMSTPKPAGIPAPAPSAKQPVLKDNKGICLGLLCAWCVAHTPLGAAHQY", "length": 2278, "header": "tr|A0A9J7KE82-1|A0A9J7KE82_CRIGR Isoform 1 of Nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC118239501 PE=4 SV=1 CANONICAL=A0A9J7KE82-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1047, "start_aa": "Thr", "end_pos": 1047, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1047", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1122, "start_aa": "Thr", "end_pos": 1122, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1122", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1154, "start_aa": "Thr", "end_pos": 1154, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1154", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1258, "start_aa": "Thr", "end_pos": 1258, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1258", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1335, "start_aa": "Thr", "end_pos": 1335, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1335", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1439, "start_aa": "Thr", "end_pos": 1439, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1439", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1516, "start_aa": "Thr", "end_pos": 1516, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1516", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1764, "start_aa": "Thr", "end_pos": 1764, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1764", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 2005, "start_aa": "Thr", "end_pos": 2005, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2005", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 2050, "start_aa": "Thr", "end_pos": 2050, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2050", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 2164, "start_aa": "Thr", "end_pos": 2164, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2164", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 364, "start_aa": "Thr", "end_pos": 364, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr364", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"categories": [ "Protein Classification" ] }, { "id": "PTHR22731:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22731:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06978", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06978", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08170", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08170", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22770", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22770", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035305510", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305510", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GMK7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GMK7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GMK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GMK7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KD65", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD65", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KD65-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD65-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPAPVLVQTSPLQSVTYVVVGKCTQKCELFHPSDLSGLHEMSNAKERKHAKKMRNQPTNVTLASGFGADRGGRHHFGGGRPSQSQKQELHSGTSQQWQVKTGTHVLPESDVIEQSSSKTMFKKKGGWKAGPEGASQEIPKYITAATFAQARAAEISAMLKAVAQKSSNSLVFQTLPRHMRRRAMSHNVKRLPRRLQEMAKKEAEKAAHQKKEQSKNKCHKARRCHLNRTLEFNRRQKRNIWLETHIWHAKRFHMVKKWGYCLGERPTTKSHRACYRAMTNLCLLQDLSYYCCLELKGKEEEILKALSQMCSTDTGLTFAAVHCLSGKRQGSVMLYQANKYPRDMLGPVTFVWKSKTTPGDSSEDRQLWIWLHPTLKLAVLEEMKTTCQCSEPVTSSVCVPDPLLTPAQEESQPELTDDKIGKKRKRKDNEKSAQRTKKTIGDGTRDPCQPRSWVSPTTGIVISDLTMEMNRFRLIGPLSHCILTSALRAAPLHTGEEDAEETPHHWWTDTSKSSDGVFLHQRQEAVFQLLGGISSPAEIPAGSILGLTVRDPRVNLPPQRSRALPHLERYQDDEQVRQLLQEGVPLECTHSFIWNQEICSSVTENKIPDQDLNRMRSELLVPGSQLVLGPRESKIPILLIQQPGKVTGKDRLGWGSGWDVLLPKGWGMAFWIPFIFRGARVGGLKEATVHSQYRRSPNIPGDFPDCLAGVRFAEDQAKDLLEKYKRRPPAKRPNYVKLGTLAPFCCPWEQLTGDWESRVRASMPGAQDDPRRLEVPGVPGETCQPSNEAGISENQPTKPEVTGCEAQTGTEVVLGQGASENHAAATGSQLCVLRNRKLLRQLSAWCGPGSEARRAPCRGQQEELTRKACLSILDEFPRALVWVSLSLLRKGSPEPQTMICVPSEEDLLQLSQDQGYHGPRESKHSDPFKSLILKQKEKKKMEKRRNRELTAPEGLAAGAPTAGQKALTKGLWSGPLPGLTSHCSRLLLGFVTQGDFSMSVGCGEALGFVSVTGLLEMLSSQSAATRGLVLLRPPASLQYRFARLAIEV", "length": 1048, "header": "tr|A0A9J7KD65-1|A0A9J7KD65_CRIGR Isoform 1 of Ribonucleases P/MRP protein subunit POP1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Pop1 PE=4 SV=1 CANONICAL=A0A9J7KD65-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GMK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GMK7/entry", "sequence": { "sequence": "MSNAKERKHAKKMRNQPTNVTLASGFGADRGGRHHFGGGRPSQSQKQELHSGTSQQWQVKTGTHVLPESDVIEQSSSKTMFKKKGGWKAGPEGASQEIPKYITAATFAQARAAEISAMLKAVAQKSSNSLVFQTLPRHMRRRAMSHNVKRLPRRLQEMAKKEAEKAAHQKKEQSKNKCHKARRCHLNRTLEFNRRQKRNIWLETHIWHAKRFHMVKKWGYCLGERPTTKSHRACYRAMTNLCLLQDLSYYCCLELKGKEEEILKALSQMCSTDTGLTFAAVHCLSGKRQGSVMLYQANKYPRDMLGPVTFVWKSKTTPGDSSEDRQLWIWLHPTLKLAVLEEMKTTCQCSEPVTSSVCVPDPLLTPAQEESQPELTDDKIGKKRKRKDNEKSAQRTKKTIGDGTRDPCQPRSWVSPTTGIVISDLTMEMNRFRLIGPLSHCILTSALRAAPLHTGEEDAEETPHHWWTDTSKSSDGVFLHQRQEAVFQLLGGISSPAEIPAGSILGLTVRDPRVNLPPQRSRALPHLERYQDDEQVRQLLQEGVPLECTHSFIWNQEICSSVTENKIPDQDLNRMRSELLVPGSQLVLGPRESKIPILLIQQPGKVTGKDRLGWGSGWDVLLPKGWGMAFWIPFIFRGARVGGLKEATVHSQYRRSPNIPGDFPDCLAGVRFAEDQAKDLLEKYKRRPPAKRPNYVKLGTLAPFCCPWEQLTGDWESRVRASMPGAQDDPRRLEVPGVPGETCQPSNEAGISENQPTKPEVTGCEAQTGTEVVLGQGASENHAAATGSQLCVLRNRKLLRQLSAWCGPGSEARRAPCRGQQEELTRKACLSILDEFPRALVWVSLSLLRKGSPEPQTMICVPSEEDLLQLSQDQGYHGPRESKHSDPFKSLILKQKEKKKMEKRRNRELTAPEGLAAGAPTAGQKALTKGLWSGPLPGLTSHCSRLLLGFVTQGDFSMSVGCGEALGFVSVTGLLEMLSSQSAATRGLVLLRPPASLQYRFARLAIEV", "length": 1008, "header": "tr|A0A9J7GMK7-1|A0A9J7GMK7_CRIGR Computationally mapped isoform of Ribonucleases P/MRP protein subunit POP1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Pop1 PE=4 SV=1 CANONICAL=A0A9J7KD65-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KD65-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD65/entry", "sequence": { "sequence": "MPAPVLVQTSPLQSVTYVVVGKCTQKCELFHPSDLSGLHEMSNAKERKHAKKMRNQPTNVTLASGFGADRGGRHHFGGGRPSQSQKQELHSGTSQQWQVKTGTHVLPESDVIEQSSSKTMFKKKGGWKAGPEGASQEIPKYITAATFAQARAAEISAMLKAVAQKSSNSLVFQTLPRHMRRRAMSHNVKRLPRRLQEMAKKEAEKAAHQKKEQSKNKCHKARRCHLNRTLEFNRRQKRNIWLETHIWHAKRFHMVKKWGYCLGERPTTKSHRACYRAMTNLCLLQDLSYYCCLELKGKEEEILKALSQMCSTDTGLTFAAVHCLSGKRQGSVMLYQANKYPRDMLGPVTFVWKSKTTPGDSSEDRQLWIWLHPTLKLAVLEEMKTTCQCSEPVTSSVCVPDPLLTPAQEESQPELTDDKIGKKRKRKDNEKSAQRTKKTIGDGTRDPCQPRSWVSPTTGIVISDLTMEMNRFRLIGPLSHCILTSALRAAPLHTGEEDAEETPHHWWTDTSKSSDGVFLHQRQEAVFQLLGGISSPAEIPAGSILGLTVRDPRVNLPPQRSRALPHLERYQDDEQVRQLLQEGVPLECTHSFIWNQEICSSVTENKIPDQDLNRMRSELLVPGSQLVLGPRESKIPILLIQQPGKVTGKDRLGWGSGWDVLLPKGWGMAFWIPFIFRGARVGGLKEATVHSQYRRSPNIPGDFPDCLAGVRFAEDQAKDLLEKYKRRPPAKRPNYVKLGTLAPFCCPWEQLTGDWESRVRASMPGAQDDPRRLEVPGVPGETCQPSNEAGISENQPTKPEVTGCEAQTGTEVVLGQGASENHAAATGSQLCVLRNRKLLRQLSAWCGPGSEARRAPCRGQQEELTRKACLSILDEFPRALVWVSLSLLRKGSPEPQTMICVPSEEDLLQLSQDQGYHGPRESKHSDPFKSLILKQKEKKKMEKRRNRELTAPEGLAAGAPTAGQKALTKGLWSGPLPGLTSHCSRLLLGFVTQGDFSMSVGCGEALGFVSVTGLLEMLSSQSAATRGLVLLRPPASLQYRFARLAIEV", "length": 1048, "header": "tr|A0A9J7KD65-1|A0A9J7KD65_CRIGR Isoform 1 of Ribonucleases P/MRP protein subunit POP1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Pop1 PE=4 SV=1 CANONICAL=A0A9J7KD65-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 457, "start_aa": "Thr", "end_pos": 457, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr457", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 961, "start_aa": "Thr", "end_pos": 961, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr961", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KD65", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD65" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KD65", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD65" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754990", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754990", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleolar ribonuclease P complex", "id": "GO:0005655", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005655", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KD65", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD65" } ], "pmid": "" }, { "name": "ribonuclease MRP complex", "id": "GO:0000172", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000172", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KD65", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD65" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "tRNA 5'-leader removal", "id": "GO:0001682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001682", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KD65", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD65" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 227, "end_pos": 229, "annotation": "n_glycosylation_sequon" }, { "start_pos": 59, "end_pos": 61, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7KD65", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD65" }, { "id": "PF22770", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22770" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "POP1 C-terminal", "eco_id": "ECO_0000259", "start_pos": 879, "end_pos": 1048, "start_aa": "Ala", "end_aa": "Val", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7KD65", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD65" }, { "id": "PF08170", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08170" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "POPLD", "eco_id": "ECO_0000259", "start_pos": 657, "end_pos": 748, "start_aa": "Gly", "end_aa": "Trp", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7KD65", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD65" }, { "id": "PF06978", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06978" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Pop1 N-terminal", "eco_id": "ECO_0000259", "start_pos": 210, "end_pos": 297, "start_aa": "Lys", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 457, 961 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 227, "end_pos": 229 }, { "start_pos": 59, "end_pos": 61 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7KD66-1", "uniprot_ac": "A0A9J7KD66", "uniprot_id": "A0A9J7KD66_CRIGR", "mass": { "chemical_mass": 56825.0, "monoisotopic_mass": 56825.0 }, "refseq": { "ac": "XP_035305552", "name": "dihydropyrimidinase isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305552" }, "gene_names": [ { "name": "Dpys", "type": "recommended", "evidence": [ { "id": "A0A9J7KD66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD66" } ] }, { "name": "Dpys", "type": "synonym", "evidence": [ { "id": "XP_035305552", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305552" } ] } ], "protein_names": [ { "name": "Dihydropyrimidinase isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7KD66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD66/entry#names_and_taxonomy" } ] }, { "name": "dihydropyrimidinase isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035305552", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305552" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048603.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035305552", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305552" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KD66", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD66" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Dpys", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD66", "locus": {} } ], "crossref": [ { "id": "A0A9J7KD66", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KD66", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd01314", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01314", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100752636", "url": "https://www.ncbi.nlm.nih.gov/gene/100752636", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011059", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011059", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011778", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011778", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032466", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032466", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050378", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050378", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752636", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752636", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KD66", "url": "https://www.orthodb.org/?gene=A0A9J7KD66", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11647", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11647", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11647:SF50", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11647:SF50", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01979", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01979", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035305552", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305552", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KD66", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD66", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KD66-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD66-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPQGRLLIRGGRVVNDDFSQVADVLVEDGVVVAVGRDLLPLGDAPRGLRILDATGKLVLPGGIDTHTHMQFPFMGSQSVDDFYQGTKAALAGGTTMIIDFAIPKKGSSLIEAFETWRSWADPKVCCDYSLHVAVTWWSDKVKEEMKTLAQDKGVNSFKMFMAYKDLYMVHDEQMYSAFSQCKEIGAVAQVHAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRAITIASVVNCPLYVVHVMSKSAAKVVADARREGKVVYGEPIAAGLGTDGTHHWSKDWHHAAHHVMGPPLRPDPSTPGFLMNLLANGDLTTTGSDNCTFNTCQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVYSGKMDENRFVAVTSTNAAKIFNLYPRKGRIAIGSDADIVIWDPEATRRISAKTHHQAVNFNIFEGMVCHGVPLVTISRGRVVYEAGVYNVAAGDGKFIPRKPFAEYIYNRIKQRDQTCTPTPVQRAPYKGEVFKLKSRETEEDDRAGTRVQGHS", "length": 519, "header": "tr|A0A9J7KD66-1|A0A9J7KD66_CRIGR Isoform 1 of Dihydropyrimidinase isoform X2 OS=Cricetulus griseus OX=10029 GN=Dpys PE=3 SV=1 CANONICAL=A0A9J7KD66-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KD66-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD66/entry", "sequence": { "sequence": "MAPQGRLLIRGGRVVNDDFSQVADVLVEDGVVVAVGRDLLPLGDAPRGLRILDATGKLVLPGGIDTHTHMQFPFMGSQSVDDFYQGTKAALAGGTTMIIDFAIPKKGSSLIEAFETWRSWADPKVCCDYSLHVAVTWWSDKVKEEMKTLAQDKGVNSFKMFMAYKDLYMVHDEQMYSAFSQCKEIGAVAQVHAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRAITIASVVNCPLYVVHVMSKSAAKVVADARREGKVVYGEPIAAGLGTDGTHHWSKDWHHAAHHVMGPPLRPDPSTPGFLMNLLANGDLTTTGSDNCTFNTCQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVYSGKMDENRFVAVTSTNAAKIFNLYPRKGRIAIGSDADIVIWDPEATRRISAKTHHQAVNFNIFEGMVCHGVPLVTISRGRVVYEAGVYNVAAGDGKFIPRKPFAEYIYNRIKQRDQTCTPTPVQRAPYKGEVFKLKSRETEEDDRAGTRVQGHS", "length": 519, "header": "tr|A0A9J7KD66-1|A0A9J7KD66_CRIGR Isoform 1 of Dihydropyrimidinase isoform X2 OS=Cricetulus griseus OX=10029 GN=Dpys PE=3 SV=1 CANONICAL=A0A9J7KD66-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 307, "start_aa": "Thr", "end_pos": 307, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr307", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KD66", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD66" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KD66", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD66" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100752636", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752636", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "dihydropyrimidinase activity", "id": "GO:0004157", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004157", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KD66", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD66" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "pyrimidine nucleobase catabolic process", "id": "GO:0006208", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006208", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KD66", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD66" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KD66", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD66" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 327, "end_pos": 329, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7KD66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD66" }, { "id": "PF01979", "database": "Pfam", "url": 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"name": "LOC113832823", "type": "synonym", "evidence": [ { "id": "XP_035307133", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307133" } ] } ], "protein_names": [ { "name": "MLV-related proviral Env polyprotein-like", "type": "synonym", "evidence": [ { "id": "XP_035307133", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307133" }, { "id": "A0A9J7KD73", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD73/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: incomplete on the amino end.", "evidence": [ { "database": "RefSeq", "id": "XP_035307133", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307133" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KD73", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD73" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113832823", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD73", "locus": {} } ], "crossref": [ { "id": "A0A9J7KD73", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KD73", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd09851", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09851", "database": "CDD", "categories": [ 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035293886", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035293886" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KD95", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD95" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100761040", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD95", "locus": {} } ], "crossref": [ { "id": "cd05793", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05793", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100761040", "url": "https://www.ncbi.nlm.nih.gov/gene/100761040", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001253", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001253", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006196", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006196", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012340", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012340", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100761040", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761040", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KD95", "url": "https://www.orthodb.org/?gene=A0A9J7KD95", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21668", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21668", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01176", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01176", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035293886", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035293886", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KD95", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD95", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KD95-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD95-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDVSSSPDAICHCRAWAQAALGSARDQLLLRKLLVLWHSSYPLPLCVAFWCRRHSCCHPEDSLTLFQLAVVPKNKGKXSKNRLSGKKENESEKQELVFKEDGQEYTQVIKMLGNGQSEAVCFDGVKRLCRIRGKLRKKDNKAIVILKYNADEARSLKEYGELPEHAKINETDTFGPGDDDEIQFDDIGDDDKDIGDI", "length": 197, "header": "tr|A0A9J7KD95-1|A0A9J7KD95_CRIGR Isoform 1 of LOW QUALITY PROTEIN: eukaryotic translation initiation factor 1A, Y-chromosomal OS=Cricetulus griseus OX=10029 GN=LOC100761040 PE=4 SV=1 CANONICAL=A0A9J7KD95-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KD95-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD95/entry", "sequence": { "sequence": "MDVSSSPDAICHCRAWAQAALGSARDQLLLRKLLVLWHSSYPLPLCVAFWCRRHSCCHPEDSLTLFQLAVVPKNKGKXSKNRLSGKKENESEKQELVFKEDGQEYTQVIKMLGNGQSEAVCFDGVKRLCRIRGKLRKKDNKAIVILKYNADEARSLKEYGELPEHAKINETDTFGPGDDDEIQFDDIGDDDKDIGDI", "length": 197, "header": "tr|A0A9J7KD95-1|A0A9J7KD95_CRIGR Isoform 1 of LOW QUALITY PROTEIN: eukaryotic translation initiation factor 1A, Y-chromosomal OS=Cricetulus griseus OX=10029 GN=LOC100761040 PE=4 SV=1 CANONICAL=A0A9J7KD95-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"A0A9J7KD95", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD95" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 169, "end_pos": 171, "annotation": "n_glycosylation_sequon" }, { "start_pos": 89, "end_pos": 91, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7KD95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD95" }, { "id": "PS50832", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50832" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "S1-like", "eco_id": "ECO_0000259", "start_pos": 92, "end_pos": 146, "start_aa": "Glu", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 169, "end_pos": 171 }, { "start_pos": 89, "end_pos": 91 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7KD97-1", "uniprot_ac": "A0A9J7KD97", "uniprot_id": "A0A9J7KD97_CRIGR", "mass": { "chemical_mass": 92675.0, "monoisotopic_mass": 92675.0 }, "refseq": { "ac": "XP_035307230", "name": "zinc finger B-box domain-containing protein 1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307230" }, "gene_names": [ { "name": "Zbbx", "type": "recommended", "evidence": [ { "id": "A0A9J7KD97", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD97" } ] }, { "name": "Zbbx", "type": "synonym", "evidence": [ { "id": "XP_035307230", 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##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035307230", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307230" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KD97", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD97" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Zbbx", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD97", "locus": {} } ], "crossref": [ { "id": "A0A9J7KD97", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KD97", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd19818", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19818", "database": "CDD", "categories": [ "Protein Classification" ] }, 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"MNTKDFVVIPWGKPGNSIKLKYKHAQELQMEKIQLELENQKMEQTLREFQSTWNKGKEEIKSGGYHWKSGSVGKFGNKSHITSQRKANATKFPAGNVKLKLLKEQIKEPAKQIVNYKMAQSSESEKPKTKKKFCGQCEIKAALLVCLECGEDYCSGCFAKMHQKGALKFHRTTLLQAKSQILSNVLDVAHRFIKEPIPPSEGNSSVETSTKSQQKPKARLLQEKSSEVETTEAEGGKGTNPLYEMPFDEEASAQSFREALTQWRAGQQKENKQQDSHAKKPDSVEECEVQTNLKIWSEPINIEFTEDSLSYMEKLWLKKHRRTPQEQLRNILPNTSHEATMEKQCSQNESNDDSDVEEIKVQYPPLFMPVEKENIERPPPSLTIVELDGTHEAEFEEPGNAVPYRVQLADSESQFSSTFPDYQNCFPRENGIHQHLVFNKGKTDLLSLCLRTDSTYHRDELKDFGNTVDTDTYSHESKQIGEISSLEQNVIEKNIDPGNNQNSGDSSCMLFWRRASFPTADLDTSFLEENSSQDTSTSLGCSNPKEKPNLEDSKTTKSHLLLQDIALRKKPVNEPYQGLEKFFTPGKNERLHSSPSPNLRGSHSCSTITFTADKVWIPDSSLSEHAGSTVALCDLQSDGNPLPNMQQQKTGQKTRRPSTVNLPVSNSARKGSSCCLSSCPRSRSAAAHSLSRAASEISEIEYIDVTDQNEPLLDYTEDQQTLDSLEKELKVLRNLSEPSEKLQSQPSDELQTFTHYSRKASQMPEDLQMSSDSDPCDIEITSSGRNTEMQSLLSLGDYSTDEEEEEFLDKQHVSALPWAKNV", "length": 822, "header": "tr|A0A9J7KD97-1|A0A9J7KD97_CRIGR Isoform 1 of Zinc finger B-box domain-containing protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Zbbx PE=4 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822, "header": "tr|A0A9J7KD97-1|A0A9J7KD97_CRIGR Isoform 1 of Zinc finger B-box domain-containing protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Zbbx PE=4 SV=1 CANONICAL=A0A9J7KD97-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: incomplete on the amino end.", "evidence": [ { "database": "RefSeq", "id": "XP_035307268", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307268" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KDB5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDB5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113833329", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDB5", "locus": {} } ], "crossref": [ { "id": "113833329", "url": "https://www.ncbi.nlm.nih.gov/gene/113833329", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR025714", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025714", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029063", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029063", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052220", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052220", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113833329", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113833329", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KDB5", "url": "https://www.orthodb.org/?gene=A0A9J7KDB5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12496", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12496", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12496:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12496:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13679", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13679", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035307268", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307268", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KDB5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDB5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KDB5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDB5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "ARSSTASACGASRREVPRGPVGATCRPGGRASVKAALCSLPRPPDLPTLHASLQDLLGCLRGALRISSAHTVDVYTQSVWQEXLDLPAQAVMAHSFSPSTQEAEAGRSLALGGSEPGHCFIDLPRVFCERSQKLLSTEAFVVAARHYYVQXGLCTPIEQLLTAVQLHKEXRTGEIVKAIEFMNTKKSHEVQEMSELICFIADYCGLKQIIDVGSGKGYLSSFLSLKYGLNVYGINSSNTNTHGAKERNRKLKKHWNLNHCQTIVDVNRLALKMPKEIGAQKEIKCKGEFESVPKSSLGNQDVSSNVLPEFSESAVSAIRKQLGDLHALPLEEEKLYFENTFSLMDFLPIDAIEPTSFSQVHNSEMSEVRKQRRNMATKPSDSSIYSPLTSFITADSELHDIIQDLELSLLLNPLDCLMVGLHTCGDLAPNTLQIFASNSEVKGVCSVGCCYHLLSEEFEKQPKEYVQENWGFPMCCYLKEERLCCGHNARTSACLALEWVAVGQELPTKSLFCHAVLQNIIKDYYGNTKCDRHVGKIYSKCSSFLDYVRMSLKKLGLDEAKLNVVLAPCIETLILLDRLCYLKEQEDVVWSALVKLFDPVNCPRCYAVVALKKQW", "length": 615, "header": "tr|A0A9J7KDB5-1|A0A9J7KDB5_CRIGR Isoform 1 of LOW QUALITY PROTEIN: methyltransferase-like protein 25 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC113833329 PE=4 SV=1 CANONICAL=A0A9J7KDB5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KDB5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDB5/entry", "sequence": { "sequence": "ARSSTASACGASRREVPRGPVGATCRPGGRASVKAALCSLPRPPDLPTLHASLQDLLGCLRGALRISSAHTVDVYTQSVWQEXLDLPAQAVMAHSFSPSTQEAEAGRSLALGGSEPGHCFIDLPRVFCERSQKLLSTEAFVVAARHYYVQXGLCTPIEQLLTAVQLHKEXRTGEIVKAIEFMNTKKSHEVQEMSELICFIADYCGLKQIIDVGSGKGYLSSFLSLKYGLNVYGINSSNTNTHGAKERNRKLKKHWNLNHCQTIVDVNRLALKMPKEIGAQKEIKCKGEFESVPKSSLGNQDVSSNVLPEFSESAVSAIRKQLGDLHALPLEEEKLYFENTFSLMDFLPIDAIEPTSFSQVHNSEMSEVRKQRRNMATKPSDSSIYSPLTSFITADSELHDIIQDLELSLLLNPLDCLMVGLHTCGDLAPNTLQIFASNSEVKGVCSVGCCYHLLSEEFEKQPKEYVQENWGFPMCCYLKEERLCCGHNARTSACLALEWVAVGQELPTKSLFCHAVLQNIIKDYYGNTKCDRHVGKIYSKCSSFLDYVRMSLKKLGLDEAKLNVVLAPCIETLILLDRLCYLKEQEDVVWSALVKLFDPVNCPRCYAVVALKKQW", "length": 615, "header": "tr|A0A9J7KDB5-1|A0A9J7KDB5_CRIGR Isoform 1 of LOW QUALITY PROTEIN: methyltransferase-like protein 25 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC113833329 PE=4 SV=1 CANONICAL=A0A9J7KDB5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"https://www.ebi.ac.uk/interpro/entry/pfam/PF13679" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Methyltransferase", "eco_id": "ECO_0000259", "start_pos": 185, "end_pos": 456, "start_aa": "Lys", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 235, "end_pos": 237 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7KDC7-1", "uniprot_ac": "A0A9J7KDC7", "uniprot_id": "A0A9J7KDC7_CRIGR", "mass": { "chemical_mass": 22675.0, "monoisotopic_mass": 22675.0 }, "refseq": { "ac": "XP_035307311", "name": "translation initiation factor IF-2-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307311" }, "gene_names": [ { "name": "LOC113832465", "type": "recommended", "evidence": [ { "id": "A0A9J7KDC7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDC7" } ] }, { "name": "LOC113832465", "type": "synonym", "evidence": [ { "id": "XP_035307311", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307311" } ] } ], "protein_names": [ { "name": "Translation initiation factor IF-2-like", "type": "synonym", "evidence": [ { "id": "A0A9J7KDC7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDC7/entry#names_and_taxonomy" } ] }, { "name": "translation initiation factor IF-2-like", "type": "synonym", "evidence": [ { "id": "XP_035307311", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307311" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035307311", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307311" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KDC7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDC7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113832465", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDC7", "locus": {} } ], "crossref": [ { "id": "A0A9J7KDC7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KDC7", "database": "AlphaFoldDB", "categories": [] }, { "id": "113832465", "url": "https://www.ncbi.nlm.nih.gov/gene/113832465", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:113832465", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113832465", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_035307311", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307311", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KDC7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDC7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KDC7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDC7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSVAAAQHLTFPAPGPGVPGAEPPEHCLPPSSSPRPRPAARHTILTGSGSGAAARGTRALGAPAPRVAGRAGPGRAAGGGRGPEVRACAARNGRERSGRVRWLRGRRPGDPSSPRETDGRACASRDAGAHGPLSGSPWLSPCRPGWAQGAAPRCGASRRGLGDHGLMGFGRRFPGLWVRLGERVAVCKAVADYVAELRGSAENVTSDRLRLPSTNYKHSS", "length": 220, "header": "tr|A0A9J7KDC7-1|A0A9J7KDC7_CRIGR Isoform 1 of Translation initiation factor IF-2-like OS=Cricetulus griseus OX=10029 GN=LOC113832465 PE=4 SV=1 CANONICAL=A0A9J7KDC7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KDC7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDC7/entry", "sequence": { "sequence": "MSVAAAQHLTFPAPGPGVPGAEPPEHCLPPSSSPRPRPAARHTILTGSGSGAAARGTRALGAPAPRVAGRAGPGRAAGGGRGPEVRACAARNGRERSGRVRWLRGRRPGDPSSPRETDGRACASRDAGAHGPLSGSPWLSPCRPGWAQGAAPRCGASRRGLGDHGLMGFGRRFPGLWVRLGERVAVCKAVADYVAELRGSAENVTSDRLRLPSTNYKHSS", "length": 220, "header": "tr|A0A9J7KDC7-1|A0A9J7KDC7_CRIGR Isoform 1 of Translation initiation factor IF-2-like OS=Cricetulus griseus OX=10029 GN=LOC113832465 PE=4 SV=1 CANONICAL=A0A9J7KDC7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KDC7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDC7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113832465", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113832465", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 203, "end_pos": 205, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 203, "end_pos": 205 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"name": "Translation initiation factor IF-2-like", "type": "synonym", "evidence": [ { "id": "A0A9J7KDD3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDD3/entry#names_and_taxonomy" } ] }, { "name": "translation initiation factor IF-2-like", "type": "synonym", "evidence": [ { "id": "XP_035307329", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307329" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 47% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated 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Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614227.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003506344", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003506344" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KDJ2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDJ2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Grm4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDJ2", "locus": {} } ], "crossref": [ { "id": "A0A9J7KDJ2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KDJ2", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd06376", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06376", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd15452", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15452", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100757229", "url": "https://www.ncbi.nlm.nih.gov/gene/100757229", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000162", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000162", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000337", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000337", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001786", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001786", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001828", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001828", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011500", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011500", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017978", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017978", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028082", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028082", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038550", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038550", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050726", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050726", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100757229", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757229", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AFMQKSR", "url": "https://omabrowser.org/oma/group/AFMQKSR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7KDJ2", "url": "https://www.orthodb.org/?gene=A0A9J7KDJ2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24060", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24060", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00003", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00003", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01094", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01094", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07562", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07562", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003506344", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003506344", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H905", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H905", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H905-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H905-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KDJ2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDJ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KDJ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDJ2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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glutamate receptor 4 isoform X1 OS=Cricetulus griseus OX=10029 GN=Grm4 PE=3 SV=1 CANONICAL=A0A9J7KDJ2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H905-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H905/entry", "sequence": { "sequence": 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isoform X2 OS=Cricetulus griseus OX=10029 GN=Grm4 PE=3 SV=1 CANONICAL=A0A9J7KDJ2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KDJ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDJ2/entry", "sequence": { "sequence": 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glutamate receptor 4 isoform X1 OS=Cricetulus griseus OX=10029 GN=Grm4 PE=3 SV=1 CANONICAL=A0A9J7KDJ2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KDJ2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDJ2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KDJ2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDJ2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100757229", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757229", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZXL9-1", "protein_name": "Glutamate metabotropic receptor 4", "gene_name": "GRM4", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSGASFCMERLSFCLLLSAWSWGWAPGGAAKPKGQGYPHMNSIRIDGDITLGGLFPVHGRGAEGKACGELKKEKGIHRLEAMLFALDRINNDPDLLPNITLGARILDTCSRDTHALEQSLTFVQALIEKDSTEVRCVNGGPPIITKPERVVGVIGASGSSVSIMVANILRLFKIPQISYASTAPDLSDNSRYDFFSRVVPSDTYQAQAMVDIVKALKWNYVSTLASEGSYGESGVEAFIQKSREDGGVCVAQSVKIPREPKPGEFDKIIRRLLETSHARAVIIFANEDDIRRVLEAAKRANQTGHFIWMGSDSWGSKISPVLHLEEVAEGSVTILPKRVSVKGFDRYFSSRTLDNNRRNIWFAEFWEENFHCKLSRHALKKGSSIKKCTNRERIGQDSSYEQEGKVQFVIDAVYAMGHALHNMHKNLCPGKVGLCPRMDPVDGVELLKYIRNVNFSGIAGTPVTFNENGDAPGRYDIYQYQIRNSTPEYKVIGQWTDHLHLKVENMLWPGGGSQLPSSICSLPCKPGERKKLVKGIPCCWHCERCDGYQYQLDEFHCKRCHFNERPNENHTSCTPIPIIKLEWSSPWAVVPVFIAIVGIIATLFVVVTFVRYNDTPIVKASGRELSYVLLTGIFLCYATTFLMIAEPDLSTCSLRRIFLGLGMSISYAALLTKTNRIYRIFEQGKKSVSAPRFISPASQLVITFSLISLQLVGVCIWFIVDPSHSVIDYEDQRTTNPHFARGILKCDISDLSLICLLGYSMLLMVTCTVYAIKTRGVPETFNEAKPIGFTMYTTCIVWLAFIPIFFGTSQSAEKMYIQTTTLTISVSLSASVSLGMLYMPKVYIILFHPEQNVPKRKRSLKAVVTAATMSNKFSQKGGFRPNGEAKSELCENLETQALSTKQTYVSYSNHAI", "length": 912 }, "evidence": [ { "id": "A0A9J7KDJ2", "url": "https://omabrowser.org/oma/group/A0A9J7KDJ2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1RZ33-1", "protein_name": "Glutamate metabotropic receptor 4", "gene_name": "GRM4", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPGKRGWGWWWARLPLCLVLSLYGPWVPSSLGKPKGHPHMNSIRIDGDITLGGLFPVHGRGSEGKACGELKKEKGIHRLEAMLFALDRINNDPDLLPNITLGARILDTCSRDTHALEQSLTFVQALIEKDGTEVRCGSGSPPIITKPERVVGVIGASASSVSIMVANILRLFKIPQISYASTAPDLSDNSRYDFFSRVVPSDTYQAQAMVDIVRALKWNYVSTLASEGSYGESGVEAFIQKSREDGGVCIAQSVKIPREPKPGEFDKIIRRLLETSNARAVIIFANEDDIRRVLEAARKANQTGHFFWMGSDSWGSKIAPVLHLEEVAEGAVTILPKRMSVRGFDRYFSSRTLDNNRRNIWFAEFWEDNFHCKLSRHALKKGSHVKKCTNRERIGQDSAYEQEGKVQFVIDAVYAMGHALHAMHRDLCPGRVGLCPRMDPVDGTQLLKYIRSVNFSGIAGNPVTFNENGDAPGRYDIYQYQLHNGSAEYKVIGSWTDHLHLRVERMHWPGSVQQLPRSICSLPCQPGERKKTVKGMPCCWHCEPCTGYQYQVDRYTCKTCPYDMRPTENRTGCRPIPIIKLEWNSPWAVLPLFLAVVGIAATLFVVVTFVRYNDTPIVKASGRELSYVLLAGIFLCYATTFLMIAEPDLGTCSLRRIFLGLGMSISYAALLTKTNRIYRIFEQGKRSVSAPRFISPTSQLAITFSLISLQLLGICVWFVVDPSHSVVDFQDQRTLDPRFARGVLKCDISDLSLICLLGYSMLLMVTCTVYAIKTRGVPETFNEAKPIGFTMYTTCIVWLAFIPIFFGTSQSADKLYIQTTTLTVSVSLSASVSLGMLYMPKVYVILFHPEQNVPKRKRSLKAVVTAATMSNKFTQKGSFPNGEAKSELCENLEAPALATKQTYVTYTNHAI", "length": 911 }, "evidence": [ { "id": "A0A9J7KDJ2", "url": "https://omabrowser.org/oma/group/A0A9J7KDJ2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "P31423-1", "protein_name": "Metabotropic glutamate receptor 4", "gene_name": "Grm4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSGKGGWAWWWARLPLCLLLSLYAPWVPSSLGKPKGHPHMNSIRIDGDITLGGLFPVHGRGSEGKACGELKKEKGIHRLEAMLFALDRINNDPDLLPNITLGARILDTCSRDTHALEQSLTFVQALIEKDGTEVRCGSGGPPIITKPERVVGVIGASGSSVSIMVANILRLFKIPQISYASTAPDLSDNSRYDFFSRVVPSDTYQAQAMVDIVRALKWNYVSTLASEGSYGESGVEAFIQKSRENGGVCIAQSVKIPREPKTGEFDKIIKRLLETSNARGIIIFANEDDIRRVLEAARRANQTGHFFWMGSDSWGSKSAPVLRLEEVAEGAVTILPKRMSVRGFDRYFSSRTLDNNRRNIWFAEFWEDNFHCKLSRHALKKGSHIKKCTNRERIGQDSAYEQEGKVQFVIDAVYAMGHALHAMHRDLCPGRVGLCPRMDPVDGTQLLKYIRNVNFSGIAGNPVTFNENGDAPGRYDIYQYQLRNGSAEYKVIGSWTDHLHLRIERMQWPGSGQQLPRSICSLPCQPGERKKTVKGMACCWHCEPCTGYQYQVDRYTCKTCPYDMRPTENRTSCQPIPIVKLEWDSPWAVLPLFLAVVGIAATLFVVVTFVRYNDTPIVKASGRELSYVLLAGIFLCYATTFLMIAEPDLGTCSLRRIFLGLGMSISYAALLTKTNRIYRIFEQGKRSVSAPRFISPASQLAITFILISLQLLGICVWFVVDPSHSVVDFQDQRTLDPRFARGVLKCDISDLSLICLLGYSMLLMVTCTVYAIKTRGVPETFNEAKPIGFTMYTTCIVWLAFIPIFFGTSQSADKLYIQTTTLTVSVSLSASVSLGMLYMPKVYIILFHPEQNVPKRKRSLKAVVTAATMSNKFTQKGNFRPNGEAKSELCENLETPALATKQTYVTYTNHAI", "length": 912 }, "evidence": [ { "id": "A0A9J7KDJ2", "url": "https://omabrowser.org/oma/group/A0A9J7KDJ2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q14833-1", "protein_name": "Metabotropic glutamate receptor 4", "gene_name": "GRM4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPGKRGLGWWWARLPLCLLLSLYGPWMPSSLGKPKGHPHMNSIRIDGDITLGGLFPVHGRGSEGKPCGELKKEKGIHRLEAMLFALDRINNDPDLLPNITLGARILDTCSRDTHALEQSLTFVQALIEKDGTEVRCGSGGPPIITKPERVVGVIGASGSSVSIMVANILRLFKIPQISYASTAPDLSDNSRYDFFSRVVPSDTYQAQAMVDIVRALKWNYVSTVASEGSYGESGVEAFIQKSREDGGVCIAQSVKIPREPKAGEFDKIIRRLLETSNARAVIIFANEDDIRRVLEAARRANQTGHFFWMGSDSWGSKIAPVLHLEEVAEGAVTILPKRMSVRGFDRYFSSRTLDNNRRNIWFAEFWEDNFHCKLSRHALKKGSHVKKCTNRERIGQDSAYEQEGKVQFVIDAVYAMGHALHAMHRDLCPGRVGLCPRMDPVDGTQLLKYIRNVNFSGIAGNPVTFNENGDAPGRYDIYQYQLRNDSAEYKVIGSWTDHLHLRIERMHWPGSGQQLPRSICSLPCQPGERKKTVKGMPCCWHCEPCTGYQYQVDRYTCKTCPYDMRPTENRTGCRPIPIIKLEWGSPWAVLPLFLAVVGIAATLFVVITFVRYNDTPIVKASGRELSYVLLAGIFLCYATTFLMIAEPDLGTCSLRRIFLGLGMSISYAALLTKTNRIYRIFEQGKRSVSAPRFISPASQLAITFSLISLQLLGICVWFVVDPSHSVVDFQDQRTLDPRFARGVLKCDISDLSLICLLGYSMLLMVTCTVYAIKTRGVPETFNEAKPIGFTMYTTCIVWLAFIPIFFGTSQSADKLYIQTTTLTVSVSLSASVSLGMLYMPKVYIILFHPEQNVPKRKRSLKAVVTAATMSNKFTQKGNFRPNGEAKSELCENLEAPALATKQTYVTYTNHAI", "length": 912 }, "evidence": [ { "id": "A0A9J7KDJ2", "url": "https://omabrowser.org/oma/group/A0A9J7KDJ2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q68EF4-1", "protein_name": "Metabotropic glutamate receptor 4", "gene_name": "Grm4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSGKGGWAWWWARLPLCLLLSLYGSWVPSSLGKPKGHPHMNSIRIDGDITLGGLFPVHGRGSEGKACGELKKEKGIHRLEAMLFALDRINNDPDLLPNITLGARILDTCSRDTHALEQSLTFVQALIEKDGTEVRCGSGGPPIITKPERVVGVIGASGSSVSIMVANILRLFKIPQISYASTAPDLSDNSRYDFFSRVVPSDTYQAQAMVDIVRALKWNYVSTLASEGSYGESGVEAFIQKSRENGGVCIAQSVKIPREPKTGEFDKIIKRLLETSNARAIIIFANEDDIRRVLEAARRANQTGHFFWMGSDSWGSKSAPVLRLEEVAEGAVTILPKRTSVRGFDRYFSSRTLDNNRRNIWFAEFWEDNFHCKLSRHALKKGSHIKKCTNRERIGQDSAYEQEGKVQFVIDAVYAMGHALHAMHRDLCPGRVGLCPRMDPVDGTQLLKYIRNVNFSGIAGNPVTFNENGDAPGRYDIYQYQRRNGSAEYKVIGSWTDHLHLRIERMQWPGSGQQLPRSICSLPCQPGERKKTVKGMACCWHCEPCTGYQYQVDRYTCKTCPYDMRPTENRTSCQPIPIVKLEWDSPWAVLPLFLAVVGIAATLFVVVTFVRYNDTPIVKASGRELSYVLLAGIFLCYATTFLMIAEPDLGTCSLRRIFLGLGMSISYAALLTKTNRIYRIFEQGKRSVSAPRFISPASQLAITFVLISLQLLCICVWFVVDPSHSVVDFQDQRTLDPRFARGVLKCDISDLSLICLLGYSMLLMVTCTVYAIKTRGVPETFNEAKPIGFTMYTTCIVWLAFIPIFFGTSQSADKLYIQTTTLTVSVSLSASVSLGMLYMPKVYIILFHPEQNVPKRKRSLKAVVTAATMSNKFTQKGNFRPNGEAKSELCENLEAPALATKQTYVTYTNHAI", "length": 912 }, "evidence": [ { "id": "A0A9J7KDJ2", "url": "https://omabrowser.org/oma/group/A0A9J7KDJ2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KDJ2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDJ2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KDJ2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDJ2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 301, "end_pos": 303, "annotation": "n_glycosylation_sequon" }, { "start_pos": 454, "end_pos": 456, "annotation": "n_glycosylation_sequon" }, { "start_pos": 484, "end_pos": 486, "annotation": "n_glycosylation_sequon" }, { "start_pos": 569, "end_pos": 571, "annotation": "n_glycosylation_sequon" }, { "start_pos": 613, "end_pos": 615, "annotation": "n_glycosylation_sequon" }, { "start_pos": 98, "end_pos": 100, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7KDJ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDJ2" }, { "id": "PS50259", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50259" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 3 profile", "eco_id": "ECO_0000259", "start_pos": 587, "end_pos": 861, "start_aa": "Trp", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 301, "end_pos": 303 }, { "start_pos": 454, "end_pos": 456 }, { "start_pos": 484, "end_pos": 486 }, { "start_pos": 569, "end_pos": 571 }, { "start_pos": 613, "end_pos": 615 }, { "start_pos": 98, "end_pos": 100 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"https://www.ncbi.nlm.nih.gov/protein/XP_035307617" }, "gene_names": [ { "name": "LOC113832931", "type": "recommended", "evidence": [ { "id": "A0A9J7KDL5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDL5" } ] }, { "name": "LOC113832931", "type": "synonym", "evidence": [ { "id": "XP_035307617", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307617" } ] } ], "protein_names": [ { "name": "IgE-binding protein-like", "type": "synonym", "evidence": [ { "id": "A0A9J7KDL5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDL5/entry#names_and_taxonomy" } ] }, { "name": "igE-binding protein-like", "type": "synonym", "evidence": [ { "id": "XP_035307617", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307617" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035307617", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307617" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KDL5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDL5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113832931", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDL5", "locus": {} } ], "crossref": [ { "id": "A0A9J7KDL5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KDL5", "database": "AlphaFoldDB", "categories": [] }, { "id": "113832931", "url": "https://www.ncbi.nlm.nih.gov/gene/113832931", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001878", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001878", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008916", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008916", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008919", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008919", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036875", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036875", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045345", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045345", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050195", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050195", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113832931", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113832931", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KDL5", "url": "https://www.orthodb.org/?gene=A0A9J7KDL5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR40389", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR40389", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR40389:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR40389:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00098", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00098", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00607", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00607", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14787", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14787", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF19317", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19317", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035307617", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307617", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KDL5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDL5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KDL5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDL5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGSSKQRDLIKNCLEIEACRPMVAESQKVLKEVQDNISETERDERIGARKRKDMSKEKGPPQDIKKGGEKIGNNRTHSSKFKRNKDSKPSLCPTTKLEALELSSSDSEILDSSKEAELEEEAARYHPDRYRLPKVKANMRPSPVNPAGVLPSAPPLFGTDSFLPLEERRKLQMAFPVFENEGARVHAPVDYNQIKELAESVRKYGVNANFTTIQVERLANYAMTPTDWETTVKAVLPNMGQYMEWKALFYDAAQAQAKANVTAENENQRQWTFEMLTGQGPHALNQTNYIWGVYAQISAAAIKAWKALTKRDESGGHLTKIVQGPQEPFSDFVARMTEAASRIFGDAEQAMPLIEQLVFEQATQECRAAIAPRKSKGLQDWLKICRELGGPLTNAGLAAAILQTQRRRNMSACFNCGKTGHLKKDCRAPERIREVELCRRCGKGYHRASECKSVRDIKGRLLPPREEPKASQPKNGPRGPWSQGPQKYGNQFRKSNSEKEGTPEDTPEWTCVPPPTSY", "length": 518, "header": "tr|A0A9J7KDL5-1|A0A9J7KDL5_CRIGR Isoform 1 of IgE-binding protein-like OS=Cricetulus griseus OX=10029 GN=LOC113832931 PE=4 SV=1 CANONICAL=A0A9J7KDL5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KDL5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDL5/entry", "sequence": { "sequence": 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This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035306171", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306171" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KDM9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDM9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100757726", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDM9", "locus": {} } ], "crossref": [ { "id": "A0A9J7KDM9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KDM9", "database": "AlphaFoldDB", "categories": [] }, { "id": "100757726", "url": "https://www.ncbi.nlm.nih.gov/gene/100757726", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001806", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001806", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100757726", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757726", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KDM9", "url": "https://www.orthodb.org/?gene=A0A9J7KDM9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47978", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47978", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00071", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00071", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035306171", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306171", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KDM9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDM9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KDM9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDM9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYYRGAQAAIVVYDITNQETFVRANTWVKELQQQASPSIVIAFAGNKADLANKSMVEYEEAQAYADDNSLLLMETSAKTAMTVNDLFLAIAKKLPKSEPQNLGGTAGRNRGVDLHEQS", "length": 118, "header": "tr|A0A9J7KDM9-1|A0A9J7KDM9_CRIGR Isoform 1 of Ras-related protein Rab-5B-like OS=Cricetulus griseus OX=10029 GN=LOC100757726 PE=3 SV=1 CANONICAL=A0A9J7KDM9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KDM9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDM9/entry", "sequence": { "sequence": "MYYRGAQAAIVVYDITNQETFVRANTWVKELQQQASPSIVIAFAGNKADLANKSMVEYEEAQAYADDNSLLLMETSAKTAMTVNDLFLAIAKKLPKSEPQNLGGTAGRNRGVDLHEQS", "length": 118, "header": "tr|A0A9J7KDM9-1|A0A9J7KDM9_CRIGR Isoform 1 of Ras-related protein Rab-5B-like OS=Cricetulus griseus OX=10029 GN=LOC100757726 PE=3 SV=1 CANONICAL=A0A9J7KDM9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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:: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035306430", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306430" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KDU1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDU1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH22orf15", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDU1", "locus": {} } ], "crossref": [ { "id": "A0A9J7KDU1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KDU1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100769698", "url": "https://www.ncbi.nlm.nih.gov/gene/100769698", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR039471", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039471", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769698", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769698", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KDU1", "url": "https://www.orthodb.org/?gene=A0A9J7KDU1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR33887", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33887", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33887:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33887:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15874", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15874", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035306430", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306430", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KDU1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDU1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KDU1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDU1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFITVMFGAGCQVLVNPWCSLVTFIMHLKQKAQVPPEVTIALLAEDGQLVRLEEGIAQAPSMACSLLQEHGTYVLVQVIKGKDGTPTRYESLLDNLDDHCPELAEELCWLSGLPGTSNSQRRRTGIRRGHHREQGPPSRSRRVASLPYRNR", "length": 151, "header": "tr|A0A9J7KDU1-1|A0A9J7KDU1_CRIGR Isoform 1 of Uncharacterized protein C22orf15 homolog OS=Cricetulus griseus OX=10029 GN=CUNH22orf15 PE=4 SV=1 CANONICAL=A0A9J7KDU1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KDU1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDU1/entry", "sequence": { "sequence": "MFITVMFGAGCQVLVNPWCSLVTFIMHLKQKAQVPPEVTIALLAEDGQLVRLEEGIAQAPSMACSLLQEHGTYVLVQVIKGKDGTPTRYESLLDNLDDHCPELAEELCWLSGLPGTSNSQRRRTGIRRGHHREQGPPSRSRRVASLPYRNR", "length": 151, "header": "tr|A0A9J7KDU1-1|A0A9J7KDU1_CRIGR Isoform 1 of Uncharacterized protein C22orf15 homolog OS=Cricetulus griseus OX=10029 GN=CUNH22orf15 PE=4 SV=1 CANONICAL=A0A9J7KDU1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7KDV2-1", "uniprot_ac": "A0A9J7KDV2", "uniprot_id": "A0A9J7KDV2_CRIGR", "mass": { "chemical_mass": 36239.0, "monoisotopic_mass": 36239.0 }, "refseq": { "ac": "XP_035306478", "name": "LOW QUALITY PROTEIN: serine protease 48 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306478" }, "gene_names": [ { "name": "Prss48", "type": "recommended", "evidence": [ { "id": "A0A9J7KDV2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDV2" } ] }, { "name": "Prss48", "type": "synonym", "evidence": [ { "id": "XP_035306478", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306478" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: serine protease 48 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035306478", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306478" }, { "id": "A0A9J7KDV2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDV2/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 8% of CDS bases frameshifts :: corrected 2 indels internal stop codons :: corrected 1 genomic stop codons ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035306478", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306478" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KDV2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDV2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Prss48", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDV2", "locus": {} } ], "crossref": [ { "id": "cd00190", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00190", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100764364", "url": "https://www.ncbi.nlm.nih.gov/gene/100764364", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001254", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001254", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009003", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009003", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018114", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018114", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100764364", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764364", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KDV2", "url": "https://www.orthodb.org/?gene=A0A9J7KDV2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24253", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24253", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24253:SF162", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24253:SF162", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00089", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00089", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035306478", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306478", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KDV2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDV2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KDV2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDV2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGPAFSVSMVLLLLMLVCGRPVYSGRIVGGQAAALGRWPWQVSLQFGRAHICGGSLISKNWVLTAAHCLKGHWIFIPYSIWLGSIDVRQSSKGKEYYVSKIVIHPKKSDTNGDIALLKLSTPVTFTSVIMPICLPNISKHHKLPASCWVTGWGQILSSSAGQYPAFLQEVEVPLIDDVECEQQYNPLSMFIPGLEPVIKKDEFCASDIKMKKDSCKGDSGGPLTCQIDGVWTQIGIVSWGLECGKIAPGVYTNVTYYQKWISAIISRAQGGWXLYLRDFLFPTVLLSLALLGSSXSLGPNTIPRQNRDAAAGELMRWNGWRIKPWAENS", "length": 329, "header": "tr|A0A9J7KDV2-1|A0A9J7KDV2_CRIGR Isoform 1 of LOW QUALITY PROTEIN: serine protease 48 isoform X2 OS=Cricetulus griseus OX=10029 GN=Prss48 PE=4 SV=1 CANONICAL=A0A9J7KDV2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KDV2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDV2/entry", "sequence": { "sequence": "MGPAFSVSMVLLLLMLVCGRPVYSGRIVGGQAAALGRWPWQVSLQFGRAHICGGSLISKNWVLTAAHCLKGHWIFIPYSIWLGSIDVRQSSKGKEYYVSKIVIHPKKSDTNGDIALLKLSTPVTFTSVIMPICLPNISKHHKLPASCWVTGWGQILSSSAGQYPAFLQEVEVPLIDDVECEQQYNPLSMFIPGLEPVIKKDEFCASDIKMKKDSCKGDSGGPLTCQIDGVWTQIGIVSWGLECGKIAPGVYTNVTYYQKWISAIISRAQGGWXLYLRDFLFPTVLLSLALLGSSXSLGPNTIPRQNRDAAAGELMRWNGWRIKPWAENS", "length": 329, "header": "tr|A0A9J7KDV2-1|A0A9J7KDV2_CRIGR Isoform 1 of LOW QUALITY PROTEIN: serine protease 48 isoform X2 OS=Cricetulus griseus OX=10029 GN=Prss48 PE=4 SV=1 CANONICAL=A0A9J7KDV2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"length": 1144, "header": "tr|A0A9J7KE52-1|A0A9J7KF60_CRIGR Computationally mapped isoform of Enamelin isoform X1 OS=Cricetulus griseus OX=10029 GN=Enam PE=4 SV=1 CANONICAL=A0A9J7KF60-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KF60-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KF60/entry", "sequence": { "sequence": "MLLLQCRNPTALPKPCNLVPNVKMEIFLVLLGLLGNSAAMPFQMPMPRMPGFSSKSEEMMRYNQFNFMNAPPMMHMGPYGNGLQMPPHMPPPYPPYQMPMWPQPVPNGWNQPPMPNFPSKTDQTQETAKPNQTNPQEPQPQKQPSKEPPNEAARAKEEAQPPQPFPPFGNGLYPYQQPPWPIPQRGPPPAFGRPQFSNEEGNPYYAYYGYHGFGGRPYYSEEMFEDYEKPKEKDPPKPEDPPPDEPPPEAATNSTVPEANSTQSIPGGSQGGNDTSPVGNRGPGPNAGNNPTVQNGVFPLPKVNVSGQGVSRNQIPWRPSKPNIYENYPYPNMRNSPSGRQWQTTGTMEPRQNGPGYQNPQRGPQWNSFAWEGKQTTRPGNPTYRKPSPPTSRVNYPNSAGNPVNFGRKSSGPNKPFVGTNPASNKPFAGTNPASNKPFEGTNPAPNKPFVGTNPAPNKPFVGTNQALNKPFVGSNPALNKPFMGTNPASIKPFMGTNAASNKPFVGNNPAPNKPFVGTNQASNKPFMGTNPAASKPSIGTNAASNKPFVRTNVASNKPSVRNNAASNKYPGGTNMASVGPKQVTDSHNVKTQNPKEKSLGQKERTVTPTKDRASPWRSSQQYGINKPNYNLPHPEGSRVNPNFNSFDQQENSYFPQDSRRVPSPKIQIQNQNRPKGIALEPRRTPFESETKKTELKHSTHQPTYPKEIPSPKREHFPAERNTWNHQEISPPLKEDRGRQEEILPYPSYGSRGNIFYHDYNNPYYPNENSPYITSNTWNEKVHSPSTMRQPENPQYPMNSLDQKETEQYNEEDPIDPNEDETFPGQSKWGDEELSFKGSPTVRQYEGDKYASTLPKDYLPYSLGNPPKELFPYSDFYAWNPPENFPIYTPGPTIAPPVDPINYYINNAIGQEESTLFPSWTSWDYGNQAQGQKESEPYFNRNVWGQSANLHKSNTPNQKRDHPYSTNSPAELPKDPTWLEGENLNYDLQITSLSPPDREQLAFPDFIPQSYPSGQNEAHLFHQSQRGSCCIGGSTGHKDNALALQDYTSSYGLAPRENKETSPVYTESSYTKYARPNVSPTSILPSQRNISENKLTAESPNPSPFGDAVPALRRNTPYSGENQLETGIMAFPEASSPQPKNKPCLKSDLGGDRRDVLKQFFEGSQLNERTAELTPEKLIIGVPDKGSGPDSIQSEVQGNEGEMQQQRPPTILKLPCFSSKLAKFHSSSTGPPTNNGRQSLLNGALSIPTENPNTSVGLATREHSKSINIDQLNADEHTTFEAFQGTSQEDQVQGCLLLQA", "length": 1300, "header": "tr|A0A9J7KF60-1|A0A9J7KF60_CRIGR Isoform 1 of Enamelin isoform X1 OS=Cricetulus griseus OX=10029 GN=Enam PE=4 SV=1 CANONICAL=A0A9J7KF60-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 893, "start_aa": "Thr", "end_pos": 893, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr893", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KE52", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE52" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KE52", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE52" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100773739", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773739", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular matrix", "id": "GO:0031012", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031012", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KF60", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KF60" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural constituent of tooth enamel", "id": "GO:0030345", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030345", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KF60", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KF60" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "positive regulation of enamel mineralization", "id": "GO:0070175", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070175", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KF60", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KF60" } ], "pmid": "" }, { "name": "amelogenesis", "id": "GO:0097186", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097186", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KF60", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KF60" } ], "pmid": "" }, { "name": "ameloblast differentiation", "id": "GO:0036305", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036305", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KF60", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KF60" } ], "pmid": "" } ] 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035306907", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306907" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KE54", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE54" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Col11a1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE54", "locus": {} } ], "crossref": [ { "id": "cd00110", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00110", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100768858", "url": "https://www.ncbi.nlm.nih.gov/gene/100768858", "database": "GeneID", "categories": [ "Genome 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"database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KE54", "url": "https://www.orthodb.org/?gene=A0A9J7KE54", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24023", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24023", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24023:SF1082", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24023:SF1082", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24023:SF1095", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24023:SF1095", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01391", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01391", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01410", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01410", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02210", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02210", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035306907", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306907", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MFS4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFS4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MFS4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFS4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HBA9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBA9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HBA9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBA9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KE54", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE54", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KE54-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE54-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPWSRWKMKRWVWNLTISTIALTFLFQAREVRGAAPVDILKALDFHNSPVGISKTTGFCTNRKNSKDSDIAYRVTEEAQISAPTKQLFPGGTFPVDFSILFTIKPKKGTQAFLLSIYNEHGIQQLGVEVGRSPVFLFEDHNGKPSPEDYPLFSTVNIADGKWHRVAISVEKKTVTMIVDCKKKITKPLDRSERSIVDTNGIMVFGTRILETDVFQGDIQQFLITGDPKAAYDYCDHYSPDCDSTSKAAQAQEPQIDEKKKSNYTKKKRTLATHSKKKSKKLTSPKPEKYASKKKKRYQATAKAKLGVQANIVDDFQDYNYGTMETYQTESPRRLSGSNEPNPVEEGFTEEYLTGEDYDVQRNISEDILYGNKGVDGRDSDLPVDGDLGEYDFYEYKEYEERTTISPNEEFGPGVPAETDFTETSINGHGTYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGLMGPPGQQGPSGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDSSKGPVVSAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSAGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGSKGDRGFDGLPGLPGDKGHRGERGPQGPPGLPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGPPGQPGIAGIDGPQGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQVGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPAGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKSGPAGIRGFPGERGLPGAQGAPGLKGGEGPQGPQGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGIQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEAGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVGGVGEKGEPGEAGNPGPPGEAGSGGPKGERGEKGEAGPPGAAGPAGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAPGSEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPSGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPLGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPIGPPGPPGLPGPAGPKGNKGSSGPTGQKGDSGLPGPPGPPGPPGEVIQPLPILSPKKTRRHTESIQSDAGDNIIDYADGMEEIFGSLNSLKQDIEHMKFPMGTQSNPARTCKDLQLSHPDFPDGEYWIDPNQGCSGDSFKVYCNFTAGGETCIYPDKKSEGVRISSWPKEKPGSWYSEFKRGKLLSYLDVEGNSINMVQMTFLRLLTASARQNFTYHCHQSTAWFDMSSASYDKALRFLGSNDEEMSYENNPHIKALYDGCASRKGYEKTVIEINTPKIDQVPIIDVMINDFGDQNQKFGFEVGSVCFLG", "length": 1816, "header": "tr|A0A9J7KE54-1|A0A9J7KE54_CRIGR Isoform 1 of Collagen alpha-1(XI) chain isoform X2 OS=Cricetulus griseus OX=10029 GN=Col11a1 PE=4 SV=1 CANONICAL=A0A9J7KE54-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MFS4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFS4/entry", "sequence": { "sequence": "MEPWSRWKMKRWVWNLTISTIALTFLFQAREVRGAAPVDILKALDFHNSPVGISKTTGFCTNRKNSKDSDIAYRVTEEAQISAPTKQLFPGGTFPVDFSILFTIKPKKGTQAFLLSIYNEHGIQQLGVEVGRSPVFLFEDHNGKPSPEDYPLFSTVNIADGKWHRVAISVEKKTVTMIVDCKKKITKPLDRSERSIVDTNGIMVFGTRILETDVFQGDIQQFLITGDPKAAYDYCDHYSPDCDSTSKAAQAQEPQIDEYAPEDIIEYDYEYGETDYKEIESITEIPTVIEETVAQTEANIVDDFQDYNYGTMETYQTESPRRLSGSNEPNPVEEGFTEEYLTGEDYDVQRNISEDILYGNKGVDGRDSDLPVDGDLGEYDFYEYKEYEERTTISPNEEFGPGVPAETDFTETSINGHGTYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGLMGPPGQQGPSGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDSSKGPVVSAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSAGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGSKGDRGFDGLPGLPGDKGHRGERGPQGPPGLPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGPPGQPGIAGIDGPQGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQVGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPAGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKSGPAGIRGFPGERGLPGAQGAPGLKGGEGPQGPQGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGIQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEAGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVGGVGEKGEPGEAGNPGPPGEAGSGGPKGERGEKGEAGPPGAAGPAGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAPGSEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPSGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPLGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPIGPPGPPGLPGPAGPKGNKGSSGPTGQKGDSGLPGPPGPPGPPGEVIQPLPILSPKKTRRHTESIQSDAGDNIIDYADGMEEIFGSLNSLKQDIEHMKFPMGTQSNPARTCKDLQLSHPDFPDGEYWIDPNQGCSGDSFKVYCNFTAGGETCIYPDKKSEGVRISSWPKEKPGSWYSEFKRGKLLSYLDVEGNSINMVQMTFLRLLTASARQNFTYHCHQSTAWFDMSSASYDKALRFLGSNDEEMSYENNPHIKALYDGCASRKGYEKTVIEINTPKIDQVPIIDVMINDFGDQNQKFGFEVGSVCFLG", "length": 1804, "header": "tr|A0A8C2MFS4-1|A0A8C2MFS4_CRIGR Computationally mapped isoform of Collagen alpha-1(XI) chain isoform X3 OS=Cricetulus griseus OX=10029 GN=Col11a1 PE=4 SV=1 CANONICAL=A0A9J7KE54-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HBA9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBA9/entry", "sequence": { "sequence": "MEPWSRWKMKRWVWNLTISTIALTFLFQAREVRGAAPVDILKALDFHNSPVGISKTTGFCTNRKNSKDSDIAYRVTEEAQISAPTKQLFPGGTFPVDFSILFTIKPKKGTQAFLLSIYNEHGIQQLGVEVGRSPVFLFEDHNGKPSPEDYPLFSTVNIADGKWHRVAISVEKKTVTMIVDCKKKITKPLDRSERSIVDTNGIMVFGTRILETDVFQGDIQQFLITGDPKAAYDYCDHYSPDCDSTSKAAQAQEPQIDEANIVDDFQDYNYGTMETYQTESPRRLSGSNEPNPVEEGFTEEYLTGEDYDVQRNISEDILYGNKGVDGRDSDLPVDGDLGEYDFYEYKEYEERTTISPNEEFGPGVPAETDFTETSINGHGTYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGLMGPPGQQGPSGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDSSKGPVVSAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSAGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGSKGDRGFDGLPGLPGDKGHRGERGPQGPPGLPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGPPGQPGIAGIDGPQGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQVGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPAGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKSGPAGIRGFPGERGLPGAQGAPGLKGGEGPQGPQGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGIQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEAGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVGGVGEKGEPGEAGNPGPPGEAGSGGPKGERGEKGEAGPPGAAGPAGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAPGSEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPSGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPLGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPIGPPGPPGLPGPAGPKGNKGSSGPTGQKGDSGLPGPPGPPGPPGEVIQPLPILSPKKTRRHTESIQSDAGDNIIDYADGMEEIFGSLNSLKQDIEHMKFPMGTQSNPARTCKDLQLSHPDFPDGEYWIDPNQGCSGDSFKVYCNFTAGGETCIYPDKKSEGVRISSWPKEKPGSWYSEFKRGKLLSYLDVEGNSINMVQMTFLRLLTASARQNFTYHCHQSTAWFDMSSASYDKALRFLGSNDEEMSYENNPHIKALYDGCASRKGYEKTVIEINTPKIDQVPIIDVMINDFGDQNQKFGFEVGSVCFLG", "length": 1765, "header": "tr|A0A9J7HBA9-1|A0A9J7HBA9_CRIGR Computationally mapped isoform of Collagen alpha-1(XI) chain isoform X4 OS=Cricetulus griseus OX=10029 GN=Col11a1 PE=4 SV=1 CANONICAL=A0A9J7KE54-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KE54-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE54/entry", "sequence": { "sequence": "MEPWSRWKMKRWVWNLTISTIALTFLFQAREVRGAAPVDILKALDFHNSPVGISKTTGFCTNRKNSKDSDIAYRVTEEAQISAPTKQLFPGGTFPVDFSILFTIKPKKGTQAFLLSIYNEHGIQQLGVEVGRSPVFLFEDHNGKPSPEDYPLFSTVNIADGKWHRVAISVEKKTVTMIVDCKKKITKPLDRSERSIVDTNGIMVFGTRILETDVFQGDIQQFLITGDPKAAYDYCDHYSPDCDSTSKAAQAQEPQIDEKKKSNYTKKKRTLATHSKKKSKKLTSPKPEKYASKKKKRYQATAKAKLGVQANIVDDFQDYNYGTMETYQTESPRRLSGSNEPNPVEEGFTEEYLTGEDYDVQRNISEDILYGNKGVDGRDSDLPVDGDLGEYDFYEYKEYEERTTISPNEEFGPGVPAETDFTETSINGHGTYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGLMGPPGQQGPSGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDSSKGPVVSAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSAGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGSKGDRGFDGLPGLPGDKGHRGERGPQGPPGLPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGPPGQPGIAGIDGPQGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQVGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPAGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKSGPAGIRGFPGERGLPGAQGAPGLKGGEGPQGPQGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGIQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEAGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVGGVGEKGEPGEAGNPGPPGEAGSGGPKGERGEKGEAGPPGAAGPAGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAPGSEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPSGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPLGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPIGPPGPPGLPGPAGPKGNKGSSGPTGQKGDSGLPGPPGPPGPPGEVIQPLPILSPKKTRRHTESIQSDAGDNIIDYADGMEEIFGSLNSLKQDIEHMKFPMGTQSNPARTCKDLQLSHPDFPDGEYWIDPNQGCSGDSFKVYCNFTAGGETCIYPDKKSEGVRISSWPKEKPGSWYSEFKRGKLLSYLDVEGNSINMVQMTFLRLLTASARQNFTYHCHQSTAWFDMSSASYDKALRFLGSNDEEMSYENNPHIKALYDGCASRKGYEKTVIEINTPKIDQVPIIDVMINDFGDQNQKFGFEVGSVCFLG", "length": 1816, "header": "tr|A0A9J7KE54-1|A0A9J7KE54_CRIGR Isoform 1 of Collagen alpha-1(XI) chain isoform X2 OS=Cricetulus griseus OX=10029 GN=Col11a1 PE=4 SV=1 CANONICAL=A0A9J7KE54-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 669, "start_aa": "Thr", "end_pos": 669, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr669", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 832, "start_aa": "Thr", "end_pos": 832, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr832", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KE54", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE54" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"url": "https://www.uniprot.org/uniprotkb/A0A9J7KE54" } ], "pmid": "" }, { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KE54", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE54" } ], "pmid": "" }, { "name": "collagen type XI trimer", "id": "GO:0005592", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005592", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KE54", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE54" } ], "pmid": "" }, { "name": "collagen type II trimer", "id": "GO:0005585", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005585", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KE54", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE54" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "extracellular matrix structural constituent", "id": "GO:0005201", "url": 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"database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEC5" } ] }, { "name": "LOC113833092", "type": "synonym", "evidence": [ { "id": "XP_035307217", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307217" } ] } ], "protein_names": [ { "name": "Late cornified envelope protein 1D-like", "type": "synonym", "evidence": [ { "id": "A0A9J7KEC5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEC5/entry#names_and_taxonomy" } ] }, { "name": "late cornified envelope protein 1D-like", "type": "synonym", "evidence": [ { "id": "XP_035307217", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307217" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035307217", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307217" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KEC5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEC5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113833092", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEC5", "locus": {} } ], "crossref": [ { "id": "A0A9J7KEC5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KEC5", "database": "AlphaFoldDB", "categories": [] }, { "id": "113833092", "url": "https://www.ncbi.nlm.nih.gov/gene/113833092", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR028205", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028205", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113833092", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113833092", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PF14672", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14672", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035307217", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307217", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KEC5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEC5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KEC5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEC5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSCQQSQQQCQPPPKCCPPKCPPVSSCCSLGSGGCCGSSSGGCCGSSSGGCCSSGGGGCCLSHHRPRRSLRRHRHSSGSCSSGGSSGCCGSSGGSSGCCGSSGGSSGCCGSSGGSSGCCGSSGGSSQQSGGCC", "length": 133, "header": "tr|A0A9J7KEC5-1|A0A9J7KEC5_CRIGR Isoform 1 of Late cornified envelope protein 1D-like OS=Cricetulus griseus OX=10029 GN=LOC113833092 PE=3 SV=1 CANONICAL=A0A9J7KEC5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KEC5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEC5/entry", "sequence": { "sequence": "MSCQQSQQQCQPPPKCCPPKCPPVSSCCSLGSGGCCGSSSGGCCGSSSGGCCSSGGGGCCLSHHRPRRSLRRHRHSSGSCSSGGSSGCCGSSGGSSGCCGSSGGSSGCCGSSGGSSGCCGSSGGSSQQSGGCC", "length": 133, "header": "tr|A0A9J7KEC5-1|A0A9J7KEC5_CRIGR Isoform 1 of Late cornified envelope protein 1D-like OS=Cricetulus griseus OX=10029 GN=LOC113833092 PE=3 SV=1 CANONICAL=A0A9J7KEC5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KEC5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEC5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035307229", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307229" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KEC8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEC8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Wdr49", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEC8", "locus": {} } ], "crossref": [ { "id": "A0A9J7KEC8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KEC8", "database": "AlphaFoldDB", "categories": [] }, { "id": "100760310", "url": "https://www.ncbi.nlm.nih.gov/gene/100760310", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035307347", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307347" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KEF2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEF2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Plvap", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEF2", "locus": {} } ], "crossref": [ { "id": "A0A9J7KEF2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KEF2", "database": "AlphaFoldDB", "categories": [] }, { "id": "100751056", "url": "https://www.ncbi.nlm.nih.gov/gene/100751056", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR009538", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009538", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751056", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751056", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KEF2", "url": "https://www.orthodb.org/?gene=A0A9J7KEF2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21687", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21687", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21687:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21687:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06637", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06637", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035307347", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307347", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KEF2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEF2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KEF2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEF2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGLAMDRSPYSRTGDAARGCWYYLRYFFLFVSLIQFLIILGLVLFMIYGNVHVTTEASLKATEIRADNLYSQVMGLSASQANLTKQLNISTHAKEAVMQLLLSARRELERINASFRQCQSDLITYINYHRFMVAIILSEKQCWEQVKENNKTCEALLFKLGEKAKTLEMEVAKEKAVCAKDKESLLAGKRQSEEQLAACDKARERQQQEQQVAEEQLRKVQALCLPLDQDKFQADALSAWRDSLTYRSLDNLGFHFPAMVPEITAIRRTCEHMPLVMSSKVEEMARGLRMGIERVTRENAELRRQKLEVERGAQGTQEARTRAEAEAQARESQLRAECARQTQLALEEKAALRAQRDGLARDLEARKRELEQLRTEVDVRISALDACLKAKSQPALPPRISSGPAPPPPIDPATLEEFKKRILESQRPPLVNPAVPPRSPAQSSAGDTTCVHVRHGEVAEEAAAAGPWARDLPTCGRWQPDAQHTGYLLCPLPSCPLLPTVSQTEEVAAPPALAGVGAGDESRGQQYHTLPLLLWDKAAIFPGSGNTGESLSLQETLGWGLANRATRGQLGRPPGQPDWRPQGTGDVPGPEPEPWDEADLVTTESLLKI", "length": 609, "header": "tr|A0A9J7KEF2-1|A0A9J7KEF2_CRIGR Isoform 1 of Plasmalemma vesicle-associated protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Plvap PE=4 SV=1 CANONICAL=A0A9J7KEF2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KEF2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEF2/entry", "sequence": { "sequence": "MGLAMDRSPYSRTGDAARGCWYYLRYFFLFVSLIQFLIILGLVLFMIYGNVHVTTEASLKATEIRADNLYSQVMGLSASQANLTKQLNISTHAKEAVMQLLLSARRELERINASFRQCQSDLITYINYHRFMVAIILSEKQCWEQVKENNKTCEALLFKLGEKAKTLEMEVAKEKAVCAKDKESLLAGKRQSEEQLAACDKARERQQQEQQVAEEQLRKVQALCLPLDQDKFQADALSAWRDSLTYRSLDNLGFHFPAMVPEITAIRRTCEHMPLVMSSKVEEMARGLRMGIERVTRENAELRRQKLEVERGAQGTQEARTRAEAEAQARESQLRAECARQTQLALEEKAALRAQRDGLARDLEARKRELEQLRTEVDVRISALDACLKAKSQPALPPRISSGPAPPPPIDPATLEEFKKRILESQRPPLVNPAVPPRSPAQSSAGDTTCVHVRHGEVAEEAAAAGPWARDLPTCGRWQPDAQHTGYLLCPLPSCPLLPTVSQTEEVAAPPALAGVGAGDESRGQQYHTLPLLLWDKAAIFPGSGNTGESLSLQETLGWGLANRATRGQLGRPPGQPDWRPQGTGDVPGPEPEPWDEADLVTTESLLKI", "length": 609, "header": "tr|A0A9J7KEF2-1|A0A9J7KEF2_CRIGR Isoform 1 of Plasmalemma vesicle-associated protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Plvap PE=4 SV=1 CANONICAL=A0A9J7KEF2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"database": "UniProtKB", "id": "A0A9J7KEF2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEF2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 112, "end_pos": 114, "annotation": "n_glycosylation_sequon" }, { "start_pos": 150, "end_pos": 152, "annotation": "n_glycosylation_sequon" }, { "start_pos": 82, "end_pos": 84, "annotation": "n_glycosylation_sequon" }, { "start_pos": 88, "end_pos": 90, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 112, "end_pos": 114 }, { "start_pos": 150, "end_pos": 152 }, { "start_pos": 82, "end_pos": 84 }, { "start_pos": 88, "end_pos": 90 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7KEF3-1", "uniprot_ac": "A0A9J7KEF3", "uniprot_id": "A0A9J7KEF3_CRIGR", "mass": { "chemical_mass": 72865.0, "monoisotopic_mass": 72865.0 }, "refseq": { "ac": "XP_035308762", "name": "MLV-related proviral Env polyprotein-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308762" }, "gene_names": [ { "name": "LOC118239666", "type": "recommended", "evidence": [ { "id": "A0A9J7KEF3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEF3" } ] }, { "name": "LOC118239666", "type": "synonym", "evidence": [ { "id": "XP_035308762", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308762" } ] } ], "protein_names": [ { "name": "MLV-related proviral Env polyprotein-like", "type": "synonym", "evidence": [ { "id": "XP_035308762", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308762" }, { "id": "A0A9J7KEF3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEF3/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308762", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308762" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KEF3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEF3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC118239666", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEF3", "locus": {} } ], "crossref": [ { "id": "A0A9J7KEF3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KEF3", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd09851", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09851", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "118239666", "url": "https://www.ncbi.nlm.nih.gov/gene/118239666", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008981", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008981", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018154", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018154", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:118239666", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118239666", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KEF3", "url": "https://www.orthodb.org/?gene=A0A9J7KEF3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10424", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10424", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10424:SF72", "url": 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"MDRTPHSKSFKDKTLSYTLLLIVCLFTPHVATNPHRVYNITWKIVNLGTGEIANLSTYIGTLHDGFPPLYVDLCDLVGSDWDPSDQEPFPGYGCHHPGGRIGTRSKDFYVCPGHKPTHDCGGPQEGYCASWGCETTGEAYWKPSSSWDFITLKWREIPGYAGKGPWRCGQRACGPCYDSARGGGFQGATPGGKCNPLILRFTDAGKRTTWDSPKVWGLRLYRAGKDPVTLFSLYRQITPLSQQSVGPNTVIADQRAPTQFQVPEPPTVPKAITPTPGAVIFSPTPDALNIEITRDPPGTGDRLLQLIQGVYQALNFSDPNKTQECWLCLVSRPPYYEGVAILGNYSNQTSAPTSCGAAMQHKLTISEVSGKGLCIGRIPPSHQELCNQVEPLSQDSRYLVAPYGTYWACSTGLTPCVSTTVLNTTIDFCILIELWPKVTYHQPEYVYSVLGKSTRYKREPISFTVALLLGGITVGGIAAGIGTGTVALQGINHFKLLQQAMHTDIQVLEESVSALEKSLTSLSEVVLQNRRGLDLLFLQEGGLCAALKEECCFYADHTGIVRDSMAKLRERLKQRQQLFESQQGWFEGWFAKSPWLTTLISTLMGPLVILFLILIFGPCILNKLTQFIRERLSVVQALVLTQQYHQLKQIDPEYPETSE", "length": 659, "header": "tr|A0A9J7KEF3-1|A0A9J7KEF3_CRIGR Isoform 1 of MLV-related proviral Env polyprotein-like OS=Cricetulus griseus OX=10029 GN=LOC118239666 PE=4 SV=1 CANONICAL=A0A9J7KEF3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KEF3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEF3/entry", "sequence": { "sequence": 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"000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"categories": [ "Protein Classification" ] }, { "id": "IPR043128", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043128", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113832329", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113832329", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KEG5", "url": "https://www.orthodb.org/?gene=A0A9J7KEG5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR33064", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33064", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33064:SF38", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33064:SF38", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00075", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00075", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16721", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16721", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17919", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17919", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18697", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18697", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035308811", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308811", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KEG5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEG5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KEG5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEG5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MANEARMRAILDIPTPQNPRQLREFLGTAGFCRLWIPGFAEMAAPLYPLTRPGVAFKWEEPQKKAFTDIKKALLESPALGLPDLAKPFELFIDEKEGYAKGVLTQKLGPWRRPTAYLSKKLDPVASGWPPCLRMIAAIALLVKDSHKLTLGQPLTIHAPHAVEAVIRQPPDRWLTNARMTHYQTMMLDKDRVHFGPLVTLNPATLLPLPGEPEAHDCLQVLAEAHGPRPNLTDQPLPSPDHIWFTDGSSFLHQGEQRAGAAVTTENQVVWAQALPPGTSSQRAELIALTQALKLAEGKKLTVYTDSRYAFATAHIHGEIYRRRGLLTSEGKDIKNKEEILALLRALHLPAALSIIHCPGHQKGDSFEARGNRRADLAAREVALTTDTTNLLALEPTNDHPSPSWDYEQRDIQTLEKLGATKEPNGDWTYEGKTVIPYRVTKYLVTFLHKMTHLSSKKMRELLEREEEFNFLLGKNDILKQVTEQCDACARVNASRLKLPPGNRVRGYWPGTHWEIDFTEIKPAHLQALQLVQREVWKPLAQAYKDQRDHPAIPHSYQIGDTVWVWRHQTKNLEPRWKGPYIVLLTTPTALKVDGIAAWIHASHVKPARPTDSATASEWTVHRTQNPLKIRLSRTPSY", "length": 637, "header": "tr|A0A9J7KEG5-1|A0A9J7KEG5_CRIGR Isoform 1 of Uncharacterized protein LOC113832329 OS=Cricetulus griseus OX=10029 GN=LOC113832329 PE=4 SV=1 CANONICAL=A0A9J7KEG5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KEG5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEG5/entry", "sequence": { "sequence": "MANEARMRAILDIPTPQNPRQLREFLGTAGFCRLWIPGFAEMAAPLYPLTRPGVAFKWEEPQKKAFTDIKKALLESPALGLPDLAKPFELFIDEKEGYAKGVLTQKLGPWRRPTAYLSKKLDPVASGWPPCLRMIAAIALLVKDSHKLTLGQPLTIHAPHAVEAVIRQPPDRWLTNARMTHYQTMMLDKDRVHFGPLVTLNPATLLPLPGEPEAHDCLQVLAEAHGPRPNLTDQPLPSPDHIWFTDGSSFLHQGEQRAGAAVTTENQVVWAQALPPGTSSQRAELIALTQALKLAEGKKLTVYTDSRYAFATAHIHGEIYRRRGLLTSEGKDIKNKEEILALLRALHLPAALSIIHCPGHQKGDSFEARGNRRADLAAREVALTTDTTNLLALEPTNDHPSPSWDYEQRDIQTLEKLGATKEPNGDWTYEGKTVIPYRVTKYLVTFLHKMTHLSSKKMRELLEREEEFNFLLGKNDILKQVTEQCDACARVNASRLKLPPGNRVRGYWPGTHWEIDFTEIKPAHLQALQLVQREVWKPLAQAYKDQRDHPAIPHSYQIGDTVWVWRHQTKNLEPRWKGPYIVLLTTPTALKVDGIAAWIHASHVKPARPTDSATASEWTVHRTQNPLKIRLSRTPSY", "length": 637, "header": "tr|A0A9J7KEG5-1|A0A9J7KEG5_CRIGR Isoform 1 of Uncharacterized protein LOC113832329 OS=Cricetulus griseus OX=10029 GN=LOC113832329 PE=4 SV=1 CANONICAL=A0A9J7KEG5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KEG5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEG5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KEG5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEG5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113832329", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113832329", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KEG5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEG5" } ], "pmid": "" }, { "name": "RNA-DNA hybrid ribonuclease activity", "id": "GO:0004523", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004523", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KEG5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEG5" } ], "pmid": "" }, { "name": "nucleotidyltransferase activity", "id": "GO:0016779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016779", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KEG5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEG5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "DNA metabolic process", "id": "GO:0006259", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006259", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KEG5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEG5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 230, "end_pos": 232, "annotation": "n_glycosylation_sequon" }, { "start_pos": 492, "end_pos": 494, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7KEG5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEG5" }, { "id": "PS50879", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50879" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RNase H type-1", "eco_id": "ECO_0000259", "start_pos": 237, "end_pos": 383, "start_aa": "Pro", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 230, "end_pos": 232 }, { "start_pos": 492, "end_pos": 494 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7KEI4-1", "uniprot_ac": "A0A9J7KEI4", "uniprot_id": "A0A9J7KEI4_CRIGR", "mass": { "chemical_mass": 101999.0, "monoisotopic_mass": 101999.0 }, "refseq": { "ac": "XP_035308892", "name": "LOW QUALITY PROTEIN: coiled-coil domain-containing protein 110", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308892" }, "gene_names": [ { "name": "Ccdc110", "type": "recommended", "evidence": [ { "id": "A0A9J7KEI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEI4" } ] }, { "name": "Ccdc110", "type": "synonym", "evidence": [ { "id": "XP_035308892", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308892" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: coiled-coil domain-containing protein 110", "type": "synonym", "evidence": [ { "id": "XP_035308892", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308892" }, { "id": "A0A9J7KEI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEI4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 4% of CDS bases frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308892", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308892" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KEI4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEI4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ccdc110", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEI4", "locus": {} } ], "crossref": [ { "id": "A0A9J7KEI4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KEI4", "database": "AlphaFoldDB", "categories": [] }, { "id": "100771325", "url": "https://www.ncbi.nlm.nih.gov/gene/100771325", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:100771325", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771325", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KEI4", "url": "https://www.orthodb.org/?gene=A0A9J7KEI4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR32083", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32083", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32083:SF32", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32083:SF32", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_035308892", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308892", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KEI4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEI4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KEI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEI4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTQLEARESHLCSDPRPKITLCQVRTCDDVHLGVVSATGYLPPSPKAVLGSVPEKHLEEEDEVDSVLLSASKFLNSSEGVKENGVSEPEYGCISQPENQIQPQSALKVLQHQLQSFQALRMQTLQNVSMVQSEISEILNKSIVEVENPQFNSEKNLVFNMHPEKDLPNEKQEEILSIKKSLHFEDPKTLHSMEENFSSNNGSSLSQSTNIPPQIQVEDMLALESLRTAAVNSPPNKAVGAWDQPSTMKGTSLHWFLPLIPQSAASQAAPVTQDKSTITMPLPKHEFHENLDDICHSIKHMKEELQKSNDRELALANELHTFQADTKMQSHGKYKLFPIQSSKLNFIQEANMEGNLSEDIKSKRISELEALVSKLLPLRETVTKLHVNFCRKCKKLSKSEICRGKRNEKNKDIPITSKNIMDLKFHSRAPRHTLSLLDPVKHDTKDKEQQPFVVHQGSITFENEKTPKANCVTEQCVAKIHYLQNYLKESMENQNKVTELENENLALRTKMKPLIFTTQSLIQKIEIYEKQLKSLVEEKNALQSKLTTAEEESNDCLRQLKKIVSTYNVLQGQYKTLEEKNCQLSLEKQQMIETLDHLKGRDYKSQNDMAVLKNENNRMNIEIEAMKTNILLLQDEREMLEKNMYQLLKDKDSLESDLKESKLETLQLKEKERLAEAEQQSLLHFLEAAKTEKLNLEATLQELASARQTLETELEAIQTYQSAAEEDFRKEIKSAKSEASIYKNNLADISKECEMLSKMVMEIKTDNQILKEELKKNSQENTKFENSISRLTEDKVLLENYVRSIENERDTLEFEMRNLQREYMSLSDKVSSHNNSQPKSAYISRREKFYFDNYDAYEDASSPRSSHLPRDLKGIPHKLYQRLPSKIYK", "length": 888, "header": "tr|A0A9J7KEI4-1|A0A9J7KEI4_CRIGR Isoform 1 of LOW QUALITY PROTEIN: coiled-coil domain-containing protein 110 OS=Cricetulus griseus OX=10029 GN=Ccdc110 PE=4 SV=1 CANONICAL=A0A9J7KEI4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KEI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEI4/entry", "sequence": { "sequence": "MTQLEARESHLCSDPRPKITLCQVRTCDDVHLGVVSATGYLPPSPKAVLGSVPEKHLEEEDEVDSVLLSASKFLNSSEGVKENGVSEPEYGCISQPENQIQPQSALKVLQHQLQSFQALRMQTLQNVSMVQSEISEILNKSIVEVENPQFNSEKNLVFNMHPEKDLPNEKQEEILSIKKSLHFEDPKTLHSMEENFSSNNGSSLSQSTNIPPQIQVEDMLALESLRTAAVNSPPNKAVGAWDQPSTMKGTSLHWFLPLIPQSAASQAAPVTQDKSTITMPLPKHEFHENLDDICHSIKHMKEELQKSNDRELALANELHTFQADTKMQSHGKYKLFPIQSSKLNFIQEANMEGNLSEDIKSKRISELEALVSKLLPLRETVTKLHVNFCRKCKKLSKSEICRGKRNEKNKDIPITSKNIMDLKFHSRAPRHTLSLLDPVKHDTKDKEQQPFVVHQGSITFENEKTPKANCVTEQCVAKIHYLQNYLKESMENQNKVTELENENLALRTKMKPLIFTTQSLIQKIEIYEKQLKSLVEEKNALQSKLTTAEEESNDCLRQLKKIVSTYNVLQGQYKTLEEKNCQLSLEKQQMIETLDHLKGRDYKSQNDMAVLKNENNRMNIEIEAMKTNILLLQDEREMLEKNMYQLLKDKDSLESDLKESKLETLQLKEKERLAEAEQQSLLHFLEAAKTEKLNLEATLQELASARQTLETELEAIQTYQSAAEEDFRKEIKSAKSEASIYKNNLADISKECEMLSKMVMEIKTDNQILKEELKKNSQENTKFENSISRLTEDKVLLENYVRSIENERDTLEFEMRNLQREYMSLSDKVSSHNNSQPKSAYISRREKFYFDNYDAYEDASSPRSSHLPRDLKGIPHKLYQRLPSKIYK", "length": 888, "header": "tr|A0A9J7KEI4-1|A0A9J7KEI4_CRIGR Isoform 1 of LOW QUALITY PROTEIN: coiled-coil domain-containing protein 110 OS=Cricetulus griseus OX=10029 GN=Ccdc110 PE=4 SV=1 CANONICAL=A0A9J7KEI4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"annotation": "n_glycosylation_sequon" }, { "start_pos": 195, "end_pos": 197, "annotation": "n_glycosylation_sequon" }, { "start_pos": 200, "end_pos": 202, "annotation": "n_glycosylation_sequon" }, { "start_pos": 354, "end_pos": 356, "annotation": "n_glycosylation_sequon" }, { "start_pos": 75, "end_pos": 77, "annotation": "n_glycosylation_sequon" }, { "start_pos": 833, "end_pos": 835, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 126, "end_pos": 128 }, { "start_pos": 139, "end_pos": 141 }, { "start_pos": 195, "end_pos": 197 }, { "start_pos": 200, "end_pos": 202 }, { "start_pos": 354, "end_pos": 356 }, { "start_pos": 75, "end_pos": 77 }, { "start_pos": 833, "end_pos": 835 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7KEL2-1", "uniprot_ac": "A0A9J7KEL2", "uniprot_id": "A0A9J7KEL2_CRIGR", "mass": { "chemical_mass": 31501.0, "monoisotopic_mass": 31501.0 }, "refseq": { "ac": "XP_035308986", "name": "uncharacterized protein LOC113832189", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308986" }, "gene_names": [ { "name": "LOC113832189", "type": "recommended", "evidence": [ { "id": "A0A9J7KEL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEL2" } ] }, { "name": "LOC113832189", "type": "synonym", "evidence": [ { "id": "XP_035308986", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308986" } ] } ], "protein_names": [ { "name": "Uncharacterized protein LOC113832189", "type": "synonym", "evidence": [ { "id": "A0A9J7KEL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEL2/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein LOC113832189", "type": "synonym", "evidence": [ { "id": "XP_035308986", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308986" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 49% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308986", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308986" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KEL2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEL2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113832189", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEL2", "locus": {} } ], "crossref": [ { "id": "A0A9J7KEL2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KEL2", "database": "AlphaFoldDB", "categories": [] }, { "id": "113832189", "url": "https://www.ncbi.nlm.nih.gov/gene/113832189", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051006", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051006", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113832189", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113832189", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KEL2", "url": "https://www.orthodb.org/?gene=A0A9J7KEL2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19343", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19343", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19343:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19343:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035308986", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308986", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KEL2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEL2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KEL2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEL2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDKILKASFVVLALHPAWVSGQQGRRDQQQVRQSPQSLTVWGGGTSVLNCTYENSAFDYFPWYRQFPGEGPALLIAILSVSNKMEDGRFTVFLSKRDKQLSLHITDSQPGDSATYFCAAGTQCSPGTCSPHPNLQLSLQQNPAVGLSLAEVQSSFHLQEQVTGDTVNVRIRLIQPQTDQGSILGQKVTQVQSTASSQEGEEVNLDCSYETSQNLYHVLWYKQLLSGEMVFLIRQISFSTQSERSGRYSIIFQKSAKSVSLVISASQIEDSVTYFCALWEQTHSA", "length": 284, "header": "tr|A0A9J7KEL2-1|A0A9J7KEL2_CRIGR Isoform 1 of Uncharacterized protein LOC113832189 OS=Cricetulus griseus OX=10029 GN=LOC113832189 PE=4 SV=1 CANONICAL=A0A9J7KEL2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KEL2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEL2/entry", "sequence": { "sequence": "MDKILKASFVVLALHPAWVSGQQGRRDQQQVRQSPQSLTVWGGGTSVLNCTYENSAFDYFPWYRQFPGEGPALLIAILSVSNKMEDGRFTVFLSKRDKQLSLHITDSQPGDSATYFCAAGTQCSPGTCSPHPNLQLSLQQNPAVGLSLAEVQSSFHLQEQVTGDTVNVRIRLIQPQTDQGSILGQKVTQVQSTASSQEGEEVNLDCSYETSQNLYHVLWYKQLLSGEMVFLIRQISFSTQSERSGRYSIIFQKSAKSVSLVISASQIEDSVTYFCALWEQTHSA", "length": 284, "header": "tr|A0A9J7KEL2-1|A0A9J7KEL2_CRIGR Isoform 1 of Uncharacterized protein LOC113832189 OS=Cricetulus griseus OX=10029 GN=LOC113832189 PE=4 SV=1 CANONICAL=A0A9J7KEL2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"IPR019179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100765586", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765586", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KEU8", "url": "https://www.orthodb.org/?gene=A0A9J7KEU8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21682", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21682", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21682:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21682:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09789", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09789", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027240509", "url": 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"MANQLRERHQSLKKKYRELIDGDPSLPPEKRKQANLAQLLRDSQDRNKHLGEEIKELRQRLGEVQGDNKLLRMTIAKQRLGDEEIGMRHFAAHEREDLVEQLERAKEQIESLEHDLQASVDELQDVKEERASYQDKVDRLNQELNHILGGHENRIIDVDALCMENRYLQERLKQLHEEVSLLKSNIAKYKNALERRKNSKGQGKSSSSALTGVLSAKQVQDLLSEDHGCSLPATPQSIADLKSLATALLETIHEKNMVIQHQRQTNRILGNRVAELEKKLRTLEVSGLWSLPGGKDTILFSDQTLTTIQRSRSPLLKFVEQPTENKESTKDGEIQKQERDESCAAAEALTVPEDAEKPAVSSPTQPSNRNQCSHFHHPPLPQLPSEELNTVGKGTVQLTDGQEAAHLVTREAPLEEQRCEPGLSPPSLASQGECTTTLQDHLSSMQPEAKASSVEGDRGISEGGDMRSTVQT", "length": 472, "header": "tr|A0A9J7HD57-1|A0A9J7HD57_CRIGR Computationally mapped isoform of Coiled-coil domain-containing protein 149 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ccdc149 PE=3 SV=1 CANONICAL=A0A9J7KEU8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KEU8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEU8/entry", "sequence": { "sequence": 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##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276808.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309428", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309428" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KEW9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEW9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113838309", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEW9", "locus": {} } ], "crossref": [ { "id": "A0A9J7KEW9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KEW9", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein 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{ "id": "A0A9J7KEW9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEW9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KEW9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEW9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPLHIANRGSEIQPPPVYRHLKPGRKANPEPLDLRNDTVINELPFKSPVTKSWSMVNNTFNRSSSQYCRSISITDSGDYEEIYNAMKYEDVHIDFTWEEWTMLDTSQKNLYKDVMLETYENLNDIGYSWEDNIIEEHCASSKSHDSHETKHTGEKSYECNQCGKAFAYHSSFLIHQRRHRGEKTYKYNQCGKAFSHHSTLQMHKNMHTREKPYECSQCGKLFSQHSTLQMHKRTHTAEKPYECNQCGKAFSRHSTLQMHKRTHTGEKPYDCNQCGKAFSHHSNLQMHKRTHTGEKPYECNQCGKAFARHSHLQMHKNLHTGEKPYECNQCGKAFSYHTVLQRHKRSHTGEKPYECNQCGKAFARHSHLQMHKRTHTGEKPYECNQCGKAFARHSHLQRHKRTHTGGKP", "length": 408, "header": "tr|A0A9J7KEW9-1|A0A9J7KEW9_CRIGR Isoform 1 of Zinc finger protein 431-like OS=Cricetulus griseus OX=10029 GN=LOC113838309 PE=3 SV=1 CANONICAL=A0A9J7KEW9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KEW9-1", "url": 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eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 46% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023277086.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309724", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309724" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KF32", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KF32" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC118239815", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KF32", "locus": {} } ], "crossref": [ { "id": "A0A9J7KF32", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KF32", "database": "AlphaFoldDB", "categories": [] }, { "id": "118239815", "url": "https://www.ncbi.nlm.nih.gov/gene/118239815", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": 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predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023277127.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: incomplete on the amino end.", "evidence": [ { "database": "RefSeq", "id": "XP_035309739", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309739" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KF37", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KF37" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113837947", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KF37", "locus": {} } ], "crossref": [ { "id": "A0A9J7KF37", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KF37", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309778", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309778" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KF48", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KF48" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113838120", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KF48", "locus": {} } ], "crossref": [ { "id": "113838120", "url": "https://www.ncbi.nlm.nih.gov/gene/113838120", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006757", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006757", "database": "InterPro", "categories": [ "Protein 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"MVAESQKMLKEVQDNISETERDERIGARKRKDMSKEKGPPQDIKKGGEKIGNNRSHPGEFKRNKDLKPSLCPTTKLEVLEQSSSDSEILDSNKETELEEELPKIKANMRPPPVNPAGVLPSAPPLFGTDSFLPLEERRKLQMAFPVFENEGARIHAPVDYNQIKELAESVRKYGVNANFTTIQVERLANYAMTPTDWETTVKAVLPNMGQYMEWKALFYDAAQAQAKANVTAENENQRQWTFEMLTGQGPHALNQTNYIWGVYAQISAAAIKAWKALTKRDESGGHLTKIVQGPQEPFSRAGQFSDFVARMTEAASRIFGDAEQAMPLIEQLVFEQATQECRAAIAPRKSKGLQDWLKICRELGGPLTNAGLAAAILQTQRRRNTSACFNCGKTGHLKKDCRAPERIREVELCRRCGKGYHRASECKSVRDIKGRLLPPREEPKVSQPKNGLRGPWSQGPQKYGNQFRKSNSEKEGTPEDTPEWTCVPPPTSY", "length": 493, "header": "tr|A0A9J7KF63-1|A0A9J7KF63_CRIGR Isoform 1 of IgE-binding protein-like OS=Cricetulus griseus OX=10029 GN=LOC118239639 PE=4 SV=1 CANONICAL=A0A9J7KF63-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KF63", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KF63" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KF63", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KF63" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:118239639", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118239639", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KF63", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KF63" } ], "pmid": "" }, { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KF63", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KF63" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "viral process", "id": "GO:0016032", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016032", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KF63", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KF63" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 15, "end_pos": 17, "annotation": "n_glycosylation_sequon" }, { "start_pos": 178, "end_pos": 180, "annotation": "n_glycosylation_sequon" }, { "start_pos": 229, "end_pos": 231, "annotation": "n_glycosylation_sequon" }, { "start_pos": 254, "end_pos": 256, "annotation": "n_glycosylation_sequon" }, { "start_pos": 384, "end_pos": 386, "annotation": "n_glycosylation_sequon" }, { "start_pos": 53, "end_pos": 55, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], 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"total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7KF65-1", "uniprot_ac": "A0A9J7KF65", "uniprot_id": "A0A9J7KF65_CRIGR", "mass": { "chemical_mass": 165533.0, "monoisotopic_mass": 165533.0 }, "refseq": { "ac": "XP_035308499", "name": "LIM domain only protein 7 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308499" }, "gene_names": [ { "name": "Lmo7", "type": "recommended", "evidence": [ { "id": "A0A9J7KF65", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KF65" } ] }, { "name": "Lmo7", "type": "synonym", "evidence": [ { "id": "XP_035308499", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308499" } ] } ], "protein_names": [ { "name": "LIM domain only protein 7 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_035308499", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308499" }, { "id": "A0A9J7KF65", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KF65/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308499", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308499" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KF65", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KF65" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Lmo7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KF65", "locus": {} } ], "crossref": [ { "id": "cd00136", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00136", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd08368", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08368", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100755679", "url": "https://www.ncbi.nlm.nih.gov/gene/100755679", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001478", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001478", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001781", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001781", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029978", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029978", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031865", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031865", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036034", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036034", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755679", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755679", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KF65", "url": "https://www.orthodb.org/?gene=A0A9J7KF65", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46767", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46767", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46767:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46767:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00412", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00412", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00595", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00595", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15949", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15949", 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"MQEYNKDDMSYRRISAIEPKSALPFNRFLPNKSKQPSYVPAPLRKKRPDKNEDNRRSWASPVYTETDGTFSSNQRRTWGPKMERWHTVQETSTSSCYLEEEEEKITHTPHPVKDDLYVRKLSPVMPNPGGSFHHFLPKCWTPEDMNWKKIKRETYKPWYKEFQGFSQFLLLQALQTYSDDILSSETSVKIDPTSGPRLITRRKNLSHTPGYGADDLELPALDPDLENDDFFVRKTGAFHANPCVLRAFEDFRRFSEPDDAVERDIILQCREGELVLPDLEKDDMIVRRIPAQKKEVPLSGAPDRYQPVPFPEPWTLPPEIQAKFLCALERTRPPQETSSSCRVLVPSYRQKRDDMLTRKIQSWKLGTAVPPVSFKPGPCSQADLRKWEAIREASRLRHRKRLMVERLFQKIYGENGSKSMSDVSAEDIQNLRQVRYEEMQKIKSQLKEQDQKWQDDLAKWKSRRKSYTSDLQKKKEEREEIEKQALEKSDRSSKTFREMLQDRESRNQNSTRRMYSSDDALDDDVLLPTVTLSETSYRSETMEDKATAYSTETPKEDCTTFSNSQDSVAAEVQFPSHIPEEQRPAPVAAVEPQQAPSSAVEAQPQAPLSATEPPQVSVSLSSVAQRPVSLSFQQSLSTRGESTRISASLPRSYQRSDTARLTSVVTARPFGTQSRGISSLPRSYTMDDGWKYNGDIEIVKRPPQNLVKATAPKLDSTQFVLGSSSEKEATTGEDVASMSSPTPSSSLSQDQAATSKATLSPMSGLDSVSDSGEGRSSPQREVSRSQDQFSDMRISINQTPGNKPDFGFTIKWDFSGISVASVEKGSPAEFSQLQVDDEILAINNTKFSYKDTKKWEETMANAQETGNLVMDVRRYGKSGSPETKWTDTTTSGIYNSDKSSSLSVTTDFSESLQSPYTESKEINGIHEESNTFDSKASESISLRNLKRRSQFFEQGSSDSVVPDLPVPTLNAPSRWAWDQEEERKRQERWQKEQDRLLQEKYQREQEKLREEWQKAQQEAERENSKYLDEELMVLNSNSISLTTREPAAATWEHTWSEGSKSSDREGTRAGEEERGQLEEDAVSEDLSRKLQEQLLLEQEKKRKEQESQEEELRKQREAEAEAQAQAQAQAQAEAEAKARAEAQAKAQEQKRAETQKHQAERERETSVKIYQYRRPIDSYDILKKEEESSGLFASDRSKSRSTTELNDAATEKNGSSKYSDRIGTTSFSQRISKKDQGPSEAELERQQILQEMRKRTSLHNDNSWIRQRSASVNKEPICLPGIMRRGESLDNLDSQRPSSWRQSPWHSQPAGVYASSSVQDFSRPPPQLLSTSNRAYMRNPSSAVPPPAGPVKSINPGPAPGSPTPHSYSSSMSQSGSQLRNRSVSGKRVCSYCNNILGKGAAMIIETLGLCYHLQCFKCVSCECDLGGSSSGAEVRIRNNQLYCNDCYLRFKSGRPTAM", 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"length": 1152, "header": "tr|A0A9J7HDT4-1|A0A9J7HDT4_CRIGR Computationally mapped isoform of LIM domain only protein 7 isoform X2 OS=Cricetulus griseus OX=10029 GN=Lmo7 PE=4 SV=1 CANONICAL=A0A9J7KF65-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HDY4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDY4/entry", "sequence": { "sequence": 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308962", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308962" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KFK6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFK6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Msmb", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFK6", "locus": {} } ], "crossref": [ { "id": "A0A9J7KFK6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KFK6", "database": "AlphaFoldDB", "categories": [] }, { "id": "100756196", "url": "https://www.ncbi.nlm.nih.gov/gene/100756196", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008735", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008735", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100756196", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756196", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KFK6", "url": "https://www.orthodb.org/?gene=A0A9J7KFK6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10500", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10500", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10500:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10500:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05825", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05825", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035308962", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308962", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KFK6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFK6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KFK6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFK6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRLLDYKKALLGSLLFLATLVTTCNAVCSLELREGHPNQPPGDCVDSDGDKHPINSYWVKDCKRCFCGEDTISCCTQTAIPSRYDKEKCQQNFHPENCTYTVVEKKNPGKPCLVEDWVL", "length": 119, "header": "tr|A0A9J7KFK6-1|A0A9J7KFK6_CRIGR Isoform 1 of Beta-microseminoprotein OS=Cricetulus griseus OX=10029 GN=Msmb PE=3 SV=1 CANONICAL=A0A9J7KFK6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KFK6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFK6/entry", "sequence": { "sequence": "MRLLDYKKALLGSLLFLATLVTTCNAVCSLELREGHPNQPPGDCVDSDGDKHPINSYWVKDCKRCFCGEDTISCCTQTAIPSRYDKEKCQQNFHPENCTYTVVEKKNPGKPCLVEDWVL", "length": 119, "header": "tr|A0A9J7KFK6-1|A0A9J7KFK6_CRIGR Isoform 1 of Beta-microseminoprotein OS=Cricetulus griseus OX=10029 GN=Msmb PE=3 SV=1 CANONICAL=A0A9J7KFK6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KFK6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFK6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KFK6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFK6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100756196", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756196", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KFK6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFK6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 97, "end_pos": 99, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": 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"count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7KFK8-1", "uniprot_ac": "A0A9J7KFK8", "uniprot_id": "A0A9J7KFK8_CRIGR", "mass": { "chemical_mass": 37184.0, "monoisotopic_mass": 37184.0 }, "refseq": { "ac": "XP_035306004", "name": "zinc finger protein 488", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306004" }, "gene_names": [ { "name": "Znf488", "type": "recommended", "evidence": [ { "id": "A0A9J7KFK8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFK8" } ] }, { "name": "Znf488", "type": "synonym", "evidence": [ { "id": "XP_035306004", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306004" } ] } ], "protein_names": [ { "name": "Zinc finger protein 488", "type": "synonym", "evidence": [ { "id": "A0A9J7KFK8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFK8/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 488", "type": "synonym", "evidence": [ { "id": "XP_035306004", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306004" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613589.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035306004", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306004" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KFK8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFK8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Znf488", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFK8", "locus": {} } ], "crossref": [ { "id": "A0A9J7KFK8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KFK8", "database": "AlphaFoldDB", "categories": [] }, { "id": "100772785", "url": "https://www.ncbi.nlm.nih.gov/gene/100772785", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052296", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052296", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772785", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772785", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DFWNLQM", "url": "https://omabrowser.org/oma/group/DFWNLQM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7KFK8", "url": "https://www.orthodb.org/?gene=A0A9J7KFK8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16516", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16516", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16516:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16516:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_035306004", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306004", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KFK8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFK8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KFK8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFK8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAGTSTLLSLSGPADHMAEGKGSSLSASVEKRWRLMEPKQIQPGLLKKITLLDSGTTAGKSSQDVTSSEPSLSTALNEPRVDRHLACKACTEQRQGTFTELSCLQKRPGDIQAQKRKPEDPEGWLGSEQRPLDHPRASVDGTVCSVWPGATRNEQRSAFSKPAKRPAEKPRRSPLLLDSGNAEGPWELSGLITTVDIPGWAQLSTFKLMGDFWRLHTLSQNILLCNAFQGAPASWLDHTQVQVPTSSMPSATASQALLPPTLSSPGLSTQNWCAKCNLAFRLTSDLVFHMRSHHKREHVGPDPHSKKRREEVLTCPICHEYFRERHHLSRHMTSHS", "length": 337, "header": "tr|A0A9J7KFK8-1|A0A9J7KFK8_CRIGR Isoform 1 of Zinc finger protein 488 OS=Cricetulus griseus OX=10029 GN=Znf488 PE=4 SV=1 CANONICAL=A0A9J7KFK8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KFK8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFK8/entry", "sequence": { "sequence": "MAAGTSTLLSLSGPADHMAEGKGSSLSASVEKRWRLMEPKQIQPGLLKKITLLDSGTTAGKSSQDVTSSEPSLSTALNEPRVDRHLACKACTEQRQGTFTELSCLQKRPGDIQAQKRKPEDPEGWLGSEQRPLDHPRASVDGTVCSVWPGATRNEQRSAFSKPAKRPAEKPRRSPLLLDSGNAEGPWELSGLITTVDIPGWAQLSTFKLMGDFWRLHTLSQNILLCNAFQGAPASWLDHTQVQVPTSSMPSATASQALLPPTLSSPGLSTQNWCAKCNLAFRLTSDLVFHMRSHHKREHVGPDPHSKKRREEVLTCPICHEYFRERHHLSRHMTSHS", "length": 337, "header": "tr|A0A9J7KFK8-1|A0A9J7KFK8_CRIGR Isoform 1 of Zinc finger protein 488 OS=Cricetulus griseus OX=10029 GN=Znf488 PE=4 SV=1 CANONICAL=A0A9J7KFK8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KFK8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFK8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KFK8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFK8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100772785", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772785", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A287ARG5-1", "protein_name": "Zinc finger protein 488", "gene_name": "ZNF488", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MASGKGALRSPSAENRWQLSEPEQGWGRKPVLLEKANHLGSEAAPDSGGQDEACAEMVLSAAPGKPRLGKLMPRKACWEQGQSAFTEVPQLKKRLGGGQAREKEHSGPAGQPDPQQMTQDVPRDPAGSTFSLWPSGARGEQRSAFSKPARCPTGRQGPASVFRAGGTADTLGELLGLINTVDVTCWGRLSNSKLLVGDFWNLQTVPQNAPLCGTFLGAPTLWLKHTTAQMPTPSSSSSTASWALLPPTFTSLGLSTQNWCAKCNLSFRLTSDLVFHMRSHHKKEQAGPDLHSKKLREEALTCPICHEYFRERHHLSRHMTSHS", "length": 323 }, "evidence": [ { "id": "A0A9J7KFK8", "url": "https://omabrowser.org/oma/group/A0A9J7KFK8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "D4AAF0-1", "protein_name": "Zinc finger protein 488", "gene_name": "Zfp488", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAGTSTLLSLSGPTDHMAEGKRASLRPSVEKRWKLMEPKQTQPGMLEKMTLVDSDAAAAGKEGQDAAYTDLSLSAAPDKLQPDRPLACKACTEQRQNTFTELSCLQERPGDIRAQTRKSENPEGQLGTQQLPVSLLRASGDGTVCPVWPGAARSEQKSAFRKPAKRPAEKSKCSPMLLAVGSADDSWELSGLITTVDIPYWAHLSTFKFMGDFWKLHTLSQNILLCNAFQGAPTPWLEHTQVQALTSSASSATASRALLPPTLSSLGLSTQNWCAKCNLAFRLTADLVFHMRSHHKREHVGPDPHSKKRREEVLTCPVCHEDFRERHHLSRHMTSHS", "length": 338 }, "evidence": [ { "id": "A0A9J7KFK8", "url": "https://omabrowser.org/oma/group/A0A9J7KFK8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5HZG9-1", "protein_name": "Zinc finger protein 488", "gene_name": "Znf488", "tax_id": 10090, 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} ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 11% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308985", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308985" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KFL0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFL0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC118239701", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFL0", "locus": {} } ], "crossref": [ { "id": "A0A9J7KFL0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KFL0", "database": "AlphaFoldDB", "categories": [] }, { "id": "118239701", "url": "https://www.ncbi.nlm.nih.gov/gene/118239701", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000463", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000463", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012674", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012674", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:118239701", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118239701", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KFL0", "url": "https://www.orthodb.org/?gene=A0A9J7KFL0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11955", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11955", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00061", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00061", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035308985", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308985", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KFL0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFL0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KFL0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFL0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKIDGAPSPPRLLTAAFVLACIKDLEGKWRLTESQGFEEYIKELGVGLALRKMGAMAKPDCIITCDSNNNITIKTESSLKTTQFSCTLEEKFDETTADGRKTQTVCTFTDGALVQLQNWDGKESTITRRVKDEKLVVDCVMNNVTCTRVSEKVE", "length": 154, "header": "tr|A0A9J7KFL0-1|A0A9J7KFL0_CRIGR Isoform 1 of Fatty acid-binding protein 5-like OS=Cricetulus griseus OX=10029 GN=LOC118239701 PE=3 SV=1 CANONICAL=A0A9J7KFL0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KFL0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFL0/entry", "sequence": { "sequence": "MKIDGAPSPPRLLTAAFVLACIKDLEGKWRLTESQGFEEYIKELGVGLALRKMGAMAKPDCIITCDSNNNITIKTESSLKTTQFSCTLEEKFDETTADGRKTQTVCTFTDGALVQLQNWDGKESTITRRVKDEKLVVDCVMNNVTCTRVSEKVE", "length": 154, "header": "tr|A0A9J7KFL0-1|A0A9J7KFL0_CRIGR Isoform 1 of Fatty acid-binding protein 5-like OS=Cricetulus griseus OX=10029 GN=LOC118239701 PE=3 SV=1 CANONICAL=A0A9J7KFL0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309000", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309000" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KFL3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFL3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Adamdec1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFL3", "locus": {} } ], "crossref": [ { "id": "A0A9J7KFL3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KFL3", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd04269", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04269", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100752574", "url": "https://www.ncbi.nlm.nih.gov/gene/100752574", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001590", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001590", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001762", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001762", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002870", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002870", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024079", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024079", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034027", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034027", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036436", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036436", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752574", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752574", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KFL3", "url": "https://www.orthodb.org/?gene=A0A9J7KFL3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11905", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11905", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11905:SF125", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11905:SF125", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01421", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01421", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01562", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01562", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035309000", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309000", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KFL3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFL3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KFL3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFL3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGFHTISSSGGRRCTRTDRFKYDNTGELEGDKTGHCLLPGTSQLPTEASMSWVLLSVLWLIIQTQVTDTKSTLELKPHEIVHPKKLPISHRRGTENNQTERYGKEERYEPEVQYQIILNGEEIIFHLRRSKHLLGPDYTETSDSPKGEATRRSQDVKPCYYEGHILNARESLASISTCDGLRGYFTHHDQRYHIKPLQSTDEGEHAVLPYSQGEPDIANNNLGDKHASRKRSHLRISRSLKSPNKVFQGQKFVNLFLVLDNAFYKMYNGNVTRIKSFVFEVMDLLNVIYKTIDIQVSLVDMEIWSDSDKIKVEPRIGTTFQNFVTWHHSNLRKRKIHNHAQLLSGSDFLHGRVGMAASNSLCTSSSVSVIEAKRKNNVSLVAVMSHELGHALGMKDVIYSTKCPSGSCVMNQYLSSKFPKDFSTASRSLFQGFFSSRNARCMLLAPSPKNIIKPTCGNQVLETGEGCDCGSPEECTNLCCEPLTCRLKSQPDCQEEASNHIM", "length": 502, "header": "tr|A0A9J7KFL3-1|A0A9J7KFL3_CRIGR Isoform 1 of ADAM DEC1 OS=Cricetulus griseus OX=10029 GN=Adamdec1 PE=4 SV=1 CANONICAL=A0A9J7KFL3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KFL3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFL3/entry", "sequence": { "sequence": "MGFHTISSSGGRRCTRTDRFKYDNTGELEGDKTGHCLLPGTSQLPTEASMSWVLLSVLWLIIQTQVTDTKSTLELKPHEIVHPKKLPISHRRGTENNQTERYGKEERYEPEVQYQIILNGEEIIFHLRRSKHLLGPDYTETSDSPKGEATRRSQDVKPCYYEGHILNARESLASISTCDGLRGYFTHHDQRYHIKPLQSTDEGEHAVLPYSQGEPDIANNNLGDKHASRKRSHLRISRSLKSPNKVFQGQKFVNLFLVLDNAFYKMYNGNVTRIKSFVFEVMDLLNVIYKTIDIQVSLVDMEIWSDSDKIKVEPRIGTTFQNFVTWHHSNLRKRKIHNHAQLLSGSDFLHGRVGMAASNSLCTSSSVSVIEAKRKNNVSLVAVMSHELGHALGMKDVIYSTKCPSGSCVMNQYLSSKFPKDFSTASRSLFQGFFSSRNARCMLLAPSPKNIIKPTCGNQVLETGEGCDCGSPEECTNLCCEPLTCRLKSQPDCQEEASNHIM", "length": 502, "header": "tr|A0A9J7KFL3-1|A0A9J7KFL3_CRIGR Isoform 1 of ADAM DEC1 OS=Cricetulus griseus OX=10029 GN=Adamdec1 PE=4 SV=1 CANONICAL=A0A9J7KFL3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KFL3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFL3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KFL3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFL3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100752574", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752574", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "metalloendopeptidase activity", "id": "GO:0004222", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004222", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KFL3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFL3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KFL3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFL3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 270, "end_pos": 272, "annotation": "n_glycosylation_sequon" }, { "start_pos": 377, "end_pos": 379, "annotation": "n_glycosylation_sequon" }, { "start_pos": 97, "end_pos": 99, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7KFL3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFL3" }, { "id": "PS50214", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50214" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Disintegrin", "eco_id": "ECO_0000259", "start_pos": 453, "end_pos": 495, "start_aa": "Lys", "end_aa": "Glu", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7KFL3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFL3" }, { "id": "PS50215", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50215" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Peptidase M12B", "eco_id": "ECO_0000259", "start_pos": 251, "end_pos": 446, "start_aa": "Lys", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 270, "end_pos": 272 }, { "start_pos": 377, "end_pos": 379 }, { "start_pos": 97, "end_pos": 99 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { 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"uniprot_canonical_ac": "A0A9J7KFP9-1", "uniprot_ac": "A0A9J7KFP9", "uniprot_id": "A0A9J7KFP9_CRIGR", "mass": { "chemical_mass": 98269.0, "monoisotopic_mass": 98269.0 }, "refseq": { "ac": "XP_035309147", "name": "LOW QUALITY PROTEIN: leucine-rich repeat-containing protein 66 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309147" }, "gene_names": [ { "name": "Lrrc66", "type": "recommended", "evidence": [ { "id": "A0A9J7KFP9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFP9" } ] }, { "name": "Lrrc66", "type": "synonym", "evidence": [ { "id": "XP_035309147", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309147" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: leucine-rich repeat-containing protein 66 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035309147", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309147" }, { "id": "A0A9J7KFP9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFP9/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel internal stop codons :: corrected 1 genomic stop codon ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309147", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309147" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KFP9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFP9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Lrrc66", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFP9", "locus": {} } ], "crossref": [ { "id": "100756871", "url": "https://www.ncbi.nlm.nih.gov/gene/100756871", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050541", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050541", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100756871", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756871", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7KFP9", "url": "https://www.orthodb.org/?gene=A0A9J7KFP9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24369", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24369", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24369:SF213", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24369:SF213", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00560", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00560", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035309147", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309147", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KFP9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFP9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KFP9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFP9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKDFYVRVTITVIGLCFPGTATNPPRKSGVFRTPEFQWDEHLLANWSSRRHTSQIAYTIDVSSVSFQVFFQSHTRKEWQIKHLDLSNHSISKMTFSPLVPLHTLEVLNLSNNALSSLSLDLPPARPAQQKQHRNSSHRGLLRLKVLILQRNQLSDTPKGLWKLKSLQNLDLSFNRIVHIGLSDFHSCLQLESIYLKSNKICTIHPEAFKGLNKLQVVDLRSNALTTLAPIVTIALELPHLELDLADNQWRCGESNANFQNVTSASWREKWDAICNMSVGNEKPYLETPQIRISREAHLPPTPSDEKSFMQSKAERPQEGMDTHLSTLEKQAQETWMGYDDLEEIQPRPPTELRDSQNRHDTDRKDNDSPDLVLAICLSVFITFVVAFCLGAFARPYIDRLWQQSCLSKRPGSENAYANEGFYDEVEASRRVQCQGTELHQAPHHLNLYESQNPSWVTEPVLYDAVMSERELESSRMEFSGQQNPMQLEDSTGVRSGVCNVLPYAQVAHSALPGLPNVDTQEPISTEQDHYDVPEELHYHTVAQEYSLHEGVMDASSIASPLGTVPSSIDGRWDELHLSQSRDVVAPVSKTVVHTSTQGSGESKERGCPEPLGAMGSPMESSQVTNSIKGLATQLPSFQEADAEEEVSGVYDEVLYNDPEDVDSPSLMPRWDSGPHVTPASKEPVLRGDPFDSHYDLVTNYESDSDEGSLFTLSSEDYDDARSLPEEQVSVENGGASQPFPSRNLGEYEDQQNSHYWAVDMTGXIMGLPKMPPALGLIASIHVYSFGNLISSPDSXLCEMDLESDPNSIDHENIATWPQPPGHKLSHHETPGTFVCVGDVRPQSEAVDGHYYLSDLEFPNVDIHHDQGACHQKQVNIGK", "length": 878, "header": "tr|A0A9J7KFP9-1|A0A9J7KFP9_CRIGR Isoform 1 of LOW QUALITY PROTEIN: leucine-rich repeat-containing protein 66 isoform X2 OS=Cricetulus griseus OX=10029 GN=Lrrc66 PE=4 SV=1 CANONICAL=A0A9J7KFP9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KFP9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFP9/entry", "sequence": { "sequence": 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Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 9% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276808.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309433", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309433" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KFT6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFT6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113838698", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFT6", "locus": {} } ], "crossref": [ { "id": "A0A9J7KFT6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KFT6", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein 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"OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24394", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24394", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24394:SF48", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24394:SF48", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13465", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13465", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035309433", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309433", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7KFT6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFT6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KFT6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFT6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPQALDPRLLLSPPCLRADMKALLDEDPITYDDVHIDFTCKEWTLLDTSQKNLYKDVMLETYKNLTDIGYSWEDNTTEEHCTNSKIHERHEVSQTGEKPSAYTQCLKTFAHNSHLQRHKTTHSGGKHYECNQCDKVFASHSKLQTHRKTHTGEKPYECKQCGKAFSQYSHLQTHKRTHTGEKPYECNQCGKAFSQQNTLQIHKRTHTGEKPYKCNQCGKAFTQHSHLQMHKRRHTEVKPYECNRCGKGFTDNSALLVHKNTHTGEKPYECNQCGKAFARNSHLQIHKRTHTGEKPYECNQCCKAFSQYSHLQTHKRTHTGEKPYECNQCGKAFSHHSTLQTHKRTHTGEKPYECNQCGKAFARNSHLQIHKRTHTGEKPYECHQCEADVAFL", "length": 392, "header": "tr|A0A9J7KFT6-1|A0A9J7KFT6_CRIGR Isoform 1 of Zinc finger protein 431-like OS=Cricetulus griseus OX=10029 GN=LOC113838698 PE=4 SV=1 CANONICAL=A0A9J7KFT6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7KFT6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFT6/entry", "sequence": { "sequence": "MPQALDPRLLLSPPCLRADMKALLDEDPITYDDVHIDFTCKEWTLLDTSQKNLYKDVMLETYKNLTDIGYSWEDNTTEEHCTNSKIHERHEVSQTGEKPSAYTQCLKTFAHNSHLQRHKTTHSGGKHYECNQCDKVFASHSKLQTHRKTHTGEKPYECKQCGKAFSQYSHLQTHKRTHTGEKPYECNQCGKAFSQQNTLQIHKRTHTGEKPYKCNQCGKAFTQHSHLQMHKRRHTEVKPYECNRCGKGFTDNSALLVHKNTHTGEKPYECNQCGKAFARNSHLQIHKRTHTGEKPYECNQCCKAFSQYSHLQTHKRTHTGEKPYECNQCGKAFSHHSTLQTHKRTHTGEKPYECNQCGKAFARNSHLQIHKRTHTGEKPYECHQCEADVAFL", "length": 392, "header": "tr|A0A9J7KFT6-1|A0A9J7KFT6_CRIGR Isoform 1 of Zinc finger protein 431-like OS=Cricetulus griseus OX=10029 GN=LOC113838698 PE=4 SV=1 CANONICAL=A0A9J7KFT6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [], "pathway": [ { "id": "cge:113838698", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113838698", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KFT6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFT6" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KFT6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFT6" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KFT6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFT6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KFT6", "url": 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"Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 103, "end_pos": 127, "start_aa": "Thr", "end_aa": "His", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A9J7KFT6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFT6" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 29, "end_pos": 97, "start_aa": "Ile", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 64, "end_pos": 66 }, { "start_pos": 75, "end_pos": 77 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", 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"tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A9J7KFU0-1", "uniprot_ac": "A0A9J7KFU0", "uniprot_id": "A0A9J7KFU0_CRIGR", "mass": { "chemical_mass": 39435.0, "monoisotopic_mass": 39435.0 }, "refseq": { "ac": "XP_035309449", "name": "zinc finger protein 431-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309449" }, "gene_names": [ { "name": "LOC113838031", "type": "recommended", "evidence": [ { "id": "A0A9J7KFU0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFU0" } ] }, { "name": "LOC113838031", "type": "synonym", "evidence": [ { "id": "XP_035309449", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309449" } ] } ], "protein_names": [ { "name": "Zinc finger protein 431-like", "type": "synonym", "evidence": [ { "id": "A0A9J7KFU0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFU0/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 431-like", "type": "synonym", "evidence": [ { "id": "XP_035309449", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309449" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 3% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276808.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309449", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309449" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KFU0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFU0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113838031", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFU0", "locus": {} } ], "crossref": [ { "id": "A0A9J7KFU0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7KFU0", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein 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"isoforms": [ { "isoform_ac": "A0A9J7KFU0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFU0/entry", "sequence": { "sequence": "MAWIPAALKTKNALTYNDVRIDFTWEEWSLLDTSQKNLYKDVMLETYKNLADIECSKEDHTTEECTSFKRHERYKRTHTGEKLHKCDQCVKAFASHSKLQMHKRKHTGEKPYRCNQCSKAFSWQSNLQRHKRTHTGEKPYVCNQCGKAFSQQSSLQEHKRTHTGEKPYECHHCGKAFSQHCNLHMHWKTHSGDKPYRCIQCNKAFSHRSTLQLHNRTHTGEKPYECNQCGKAFAYSSHLQTHKRTHTGEKPYECNQCGKAFSQQSSLQKHKRTHTGEKPYECNQCGKAFSDQSTLKKHKRIHTGEKPYECNQCGKAFARHISLQRHEGTHRGQKPNE", "length": 337, "header": "tr|A0A9J7KFU0-1|A0A9J7KFU0_CRIGR Isoform 1 of Zinc finger protein 431-like OS=Cricetulus griseus OX=10029 GN=LOC113838031 PE=3 SV=1 CANONICAL=A0A9J7KFU0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [], "pathway": [ { "id": "cge:113838031", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113838031", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular 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